BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029577
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic
OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2
Length = 171
Score = 194 bits (494), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/146 (70%), Positives = 119/146 (81%), Gaps = 8/146 (5%)
Query: 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
MAAMNSSVL C+YAI+GS GS ELN K+ V++ G K MPVI+AQ+V V +
Sbjct: 1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58
Query: 57 GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
G++GRR+AM LA TLF+TA A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59 GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116
Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQK 142
RA+TVQFG+CKFPENFTGCQDLAKQK
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQK 142
>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment)
OS=Zea mays GN=PSAN PE=3 SV=1
Length = 112
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 57/62 (91%)
Query: 81 SSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAK 140
+ SA A + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAK
Sbjct: 22 TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81
Query: 141 QK 142
QK
Sbjct: 82 QK 83
>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum
vulgare GN=PSAN PE=2 SV=1
Length = 145
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 64/77 (83%)
Query: 66 ALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
ALL + ATAA++ SA A V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+
Sbjct: 40 ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99
Query: 126 CKFPENFTGCQDLAKQK 142
CKFP NFTGCQDLAKQK
Sbjct: 100 CKFPYNFTGCQDLAKQK 116
>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox
carteri GN=PSAN PE=2 SV=1
Length = 139
Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 88 VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLA 139
V+++ L +S ANK LN++KRLATS AN AR+ TV GTC+FPENF GC++LA
Sbjct: 55 VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELA 106
>sp|Q6BIV1|ISN1_DEBHA IMP-specific 5'-nucleotidase 1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ISN1 PE=3 SV=2
Length = 485
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 65 MALLAVTLFTTATAAASSSANAGVIDEY------LERSKANKELNDQKR---LATSG-AN 114
+ LL++ LF AA +GV Y ++R + ELND +R L G +N
Sbjct: 203 IKLLSMNLFIGVVTAAGYPGQSGVPQYYERLKGLIDRIRTTPELNDHQRENLLVMGGESN 262
Query: 115 FARAYTVQFGTCKFPE 130
+ Y +FG KF E
Sbjct: 263 YLFRYDNEFGNLKFIE 278
>sp|C1CNA5|ILVD_STRZP Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
P1031) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CU32|ILVD_STRZT Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
Taiwan19F-14) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CH59|ILVD_STRZJ Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain JJA)
GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|P65160|ILVD_STRR6 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|P65159|ILVD_STRPN Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 4
(strain ATCC BAA-334 / TIGR4) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B8ZPQ2|ILVD_STRPJ Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain ATCC
700669 / Spain 23F-1) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B1I9U2|ILVD_STRPI Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|C1CAX1|ILVD_STRP7 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
70585) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B5E3D3|ILVD_STRP4 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 19F
(strain G54) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|Q04I44|ILVD_STRP2 Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae serotype 2
(strain D39 / NCTC 7466) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|B2IN52|ILVD_STRPS Dihydroxy-acid dehydratase OS=Streptococcus pneumoniae (strain
CGSP14) GN=ilvD PE=3 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 41 GVISTWAENTPCNIHLHDFGKLAKEGVKSAGAWPVQFGTI 80
>sp|Q8DRT7|ILVD_STRMU Dihydroxy-acid dehydratase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=ilvD PE=3 SV=1
Length = 571
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQFGT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKVGVKEAGAWPVQFGTI 84
>sp|P42053|PSAN_CUCSA Photosystem I reaction center subunit N (Fragment) OS=Cucumis
sativus GN=PSAN PE=1 SV=1
Length = 24
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 88 VIDEYLERSKANKELNDQKRLAT 110
V ++YLE+SKAN ELND+K T
Sbjct: 2 VXEDYLEKSKANLELNDKKXXXT 24
>sp|A4VXL9|ILVD_STRSY Dihydroxy-acid dehydratase OS=Streptococcus suis (strain 05ZYH33)
GN=ilvD PE=3 SV=1
Length = 571
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQ+GT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKEGVKEAGAWPVQYGTI 84
>sp|A4W3W3|ILVD_STRS2 Dihydroxy-acid dehydratase OS=Streptococcus suis (strain 98HAH33)
GN=ilvD PE=3 SV=1
Length = 571
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A A+ VQ+GT
Sbjct: 45 GVISTWAENTPCNIHLHDFGKLAKEGVKEAGAWPVQYGTI 84
>sp|A2BID7|PRD10_DANRE PR domain zinc finger protein 10 OS=Danio rerio GN=prdm10 PE=3 SV=2
Length = 1121
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 2 AAMNSS-VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPV 43
AA+NSS V +Y IS G +EL+ K VSV + A GH P+
Sbjct: 1049 AAVNSSQVKTTHYVISD--GQTELDGKQVSVPSTATQGHPDPL 1089
>sp|A3CR42|ILVD_STRSV Dihydroxy-acid dehydratase OS=Streptococcus sanguinis (strain SK36)
GN=ilvD PE=3 SV=1
Length = 572
Score = 30.4 bits (67), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTC 126
GVI + E + N L+D +LA G A+ VQ+GT
Sbjct: 46 GVISTWAENTPCNIHLHDLGKLAKEGIKAEGAWPVQYGTI 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.126 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,689,472
Number of Sequences: 539616
Number of extensions: 2197636
Number of successful extensions: 5069
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5040
Number of HSP's gapped (non-prelim): 32
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)