Query 029577
Match_columns 191
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 15:08:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00054 photosystem I reactio 100.0 5.8E-50 1.3E-54 320.0 8.5 130 34-177 1-132 (139)
2 PF05479 PsaN: Photosystem I r 100.0 1.1E-46 2.3E-51 301.1 -2.8 103 38-143 8-110 (138)
3 PLN00078 photosystem I reactio 99.9 1.2E-25 2.5E-30 177.2 1.9 95 52-157 27-122 (122)
4 KOG3381 Uncharacterized conser 79.2 0.59 1.3E-05 39.4 -0.1 17 97-113 129-145 (161)
5 COG5133 Uncharacterized conser 70.0 1.5 3.3E-05 37.4 0.1 19 95-113 147-165 (181)
6 PF07172 GRP: Glycine rich pro 56.6 6.9 0.00015 29.6 1.5 14 94-107 32-45 (95)
7 PF08384 NPP: Pro-opiomelanoco 46.7 7.2 0.00016 27.0 0.2 35 133-172 6-41 (45)
8 PLN00064 photosystem II protei 41.8 36 0.00078 29.0 3.7 88 52-162 27-114 (166)
9 PF05757 PsbQ: Oxygen evolving 37.8 8.7 0.00019 32.8 -0.6 25 42-70 16-40 (202)
10 PF09551 Spore_II_R: Stage II 35.6 40 0.00086 27.2 2.9 53 116-188 71-123 (130)
11 TIGR02811 formate_TAT formate 33.8 56 0.0012 23.3 3.1 15 56-70 6-20 (66)
12 PLN00042 photosystem II oxygen 31.3 61 0.0013 29.1 3.6 42 58-102 49-92 (260)
13 TIGR02837 spore_II_R stage II 30.5 58 0.0013 27.5 3.2 53 115-187 105-157 (168)
14 PF14285 DUF4367: Domain of un 26.5 81 0.0018 23.3 3.1 30 61-90 3-32 (168)
15 TIGR03044 PS_II_psb27 photosys 26.4 80 0.0017 26.0 3.2 75 63-162 11-85 (135)
16 PF10399 UCR_Fe-S_N: Ubiquitin 26.0 65 0.0014 21.4 2.2 19 57-75 7-25 (41)
17 PF12650 DUF3784: Domain of un 25.5 22 0.00047 25.6 -0.1 25 85-109 19-43 (97)
18 PF13350 Y_phosphatase3: Tyros 24.9 79 0.0017 24.1 2.8 32 55-94 131-162 (164)
19 PF11022 DUF2611: Protein of u 24.1 1.4E+02 0.0029 22.1 3.7 16 86-101 54-69 (71)
20 KOG3537 Adaptor protein NUMB [ 23.4 62 0.0013 31.8 2.4 50 121-172 32-85 (543)
21 PF15240 Pro-rich: Proline-ric 22.3 54 0.0012 28.0 1.6 25 64-91 2-26 (179)
22 PRK09133 hypothetical protein; 21.6 65 0.0014 28.4 2.0 27 65-91 12-38 (472)
23 PRK14139 heat shock protein Gr 21.3 28 0.00061 29.2 -0.3 24 94-117 43-67 (185)
24 PRK07474 sulfur oxidation prot 21.0 1.4E+02 0.0031 24.5 3.7 21 146-166 86-106 (154)
25 PF12318 FAD-SLDH: Membrane bo 20.0 1.5E+02 0.0031 24.1 3.6 15 84-98 34-48 (168)
No 1
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=100.00 E-value=5.8e-50 Score=320.01 Aligned_cols=130 Identities=59% Similarity=0.752 Sum_probs=114.3
Q ss_pred CcccccCccceeeeeccc--cccccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhccc
Q 029577 34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATS 111 (191)
Q Consensus 34 p~~~~~klPvira~~~~~--~~~~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs 111 (191)
+++++.++|+|++|++.. +...++++|||++|++||++|+++| +.+++||||||+|||+|||+|||||||||||||
T Consensus 1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS 78 (139)
T PLN00054 1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS 78 (139)
T ss_pred CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence 457889999999999884 7778999999999999999999987 889999999999999999999999999999999
Q ss_pred ccccccceeeeecceecCCCccchhhHHhhhhccchhhhhhhcccccccceeeeeecCCccccccc
Q 029577 112 GANFARAYTVQFGTCKFPENFTGCQDLAKQKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLIS 177 (191)
Q Consensus 112 ~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~~s~~~il~w~~K~~~~ts~v~mfsgnge~~q~~~ 177 (191)
++||+|+||||||+|+||+|||||||||||| |-+.-+..++|.....+...-.+
T Consensus 79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k------------~V~flsdDl~iECEGkd~~~CgS 132 (139)
T PLN00054 79 GANFARSRTVQDGTCKFPENFTGCEDLAKQK------------KVPFISEDLALECEGKDKKKCGS 132 (139)
T ss_pred chhhhhheeeecccccCCcccccHHHHHhcC------------CCCccccccceeecCCccceecc
Confidence 9999999999999999999999999999998 34445556666666655544333
No 2
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=100.00 E-value=1.1e-46 Score=301.10 Aligned_cols=103 Identities=68% Similarity=0.937 Sum_probs=47.7
Q ss_pred ccCccceeeeeccccccccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccc
Q 029577 38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117 (191)
Q Consensus 38 ~~klPvira~~~~~~~~~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs~aNfaR 117 (191)
..++|+|++++... ...+.+++||+++++|+++|++|| +.+++||+|||+|||+|||+||||||||||+||++||+|
T Consensus 8 sa~~qai~~~ka~~-~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR 84 (138)
T PF05479_consen 8 SAKVQAIRAAKAKR-VVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR 84 (138)
T ss_dssp ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred hcccchhhhccCCC-cccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence 45889999998774 456778899999999999999887 678999999999999999999999999999999999999
Q ss_pred ceeeeecceecCCCccchhhHHhhhh
Q 029577 118 AYTVQFGTCKFPENFTGCQDLAKQKC 143 (191)
Q Consensus 118 aytv~fG~ckfP~nf~gcqdLAk~k~ 143 (191)
+||||||+|+||+|||||||||+||+
T Consensus 85 ~~tv~fg~c~fP~n~~gc~~la~~~~ 110 (138)
T PF05479_consen 85 AYTVQFGTCKFPENFTGCQDLAKQKK 110 (138)
T ss_dssp GTT--TSTSSSSS-SSSSSSS-STT-
T ss_pred heeeecccccCCccchhhHHHHHcCC
Confidence 99999999999999999999999986
No 3
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=99.91 E-value=1.2e-25 Score=177.19 Aligned_cols=95 Identities=32% Similarity=0.472 Sum_probs=90.5
Q ss_pred cccccCCchhHHHHHHHHHHHHHhhhhc-cccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccceeeeecceecCC
Q 029577 52 SKESRGTDGRRAAMALLAVTLFTTATAA-ASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPE 130 (191)
Q Consensus 52 ~~~~~~~~gRRaaL~~LAa~l~~tAa~a-~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~ 130 (191)
..++|||.+||++|++|.+ ||||+ .++.++..+||+||+||++|||.|||+|| |++|+|+|++||++.+++.
T Consensus 27 ~~a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERL---DdYYKRNykDYF~fveG~~ 99 (122)
T PLN00078 27 MLAQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERL---DDYYKRNYKDYFGLIEGPA 99 (122)
T ss_pred HHHHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHH---HHHHHHhHHHHHHHhcccc
Confidence 4579999999999999999 88888 78899999999999999999999999999 9999999999999999999
Q ss_pred CccchhhHHhhhhccchhhhhhhcccc
Q 029577 131 NFTGCQDLAKQKCHSSRMIWNWSAKGK 157 (191)
Q Consensus 131 nf~gcqdLAk~k~~s~~~il~w~~K~~ 157 (191)
..+..++|. |++|+|++|++|.+
T Consensus 100 r~kke~eLs----EsEK~IleWL~KNK 122 (122)
T PLN00078 100 REKKEDELT----ESEKGILEWLDKNK 122 (122)
T ss_pred ccCChhhcC----HHHHHHHHHHHccC
Confidence 999999999 99999999999864
No 4
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.18 E-value=0.59 Score=39.37 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhhccccc
Q 029577 97 KANKELNDQKRLATSGA 113 (191)
Q Consensus 97 kaNKELNDKkRlaTs~a 113 (191)
.-||.||||+|.|..-.
T Consensus 129 ~vNKQLnDKERVaAA~E 145 (161)
T KOG3381|consen 129 AVNKQLNDKERVAAALE 145 (161)
T ss_pred HHHhhhccHHHHHHHhc
Confidence 46999999999976433
No 5
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=70.01 E-value=1.5 Score=37.37 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=14.8
Q ss_pred Hhhhhhhhhhhhhhccccc
Q 029577 95 RSKANKELNDQKRLATSGA 113 (191)
Q Consensus 95 KSkaNKELNDKkRlaTs~a 113 (191)
.+.-||.||||+|.|..-.
T Consensus 147 e~qvNKQLnDKeRVaAAcE 165 (181)
T COG5133 147 ERQVNKQLNDKERVAAACE 165 (181)
T ss_pred HHHHhhhhchHHHHHHhhc
Confidence 3567999999999975433
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=56.57 E-value=6.9 Score=29.57 Aligned_cols=14 Identities=29% Similarity=0.537 Sum_probs=8.0
Q ss_pred HHhhhhhhhhhhhh
Q 029577 94 ERSKANKELNDQKR 107 (191)
Q Consensus 94 ~KSkaNKELNDKkR 107 (191)
+|..+.++.+|.|.
T Consensus 32 ~~~~~~~~v~~~~~ 45 (95)
T PF07172_consen 32 EKEEEENEVQDDKY 45 (95)
T ss_pred cccccCCCCCcccc
Confidence 55555566666553
No 7
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=46.67 E-value=7.2 Score=27.01 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=25.8
Q ss_pred cchhhHHhhhhccchhhhhhhcccccc-cceeeeeecCCcc
Q 029577 133 TGCQDLAKQKCHSSRMIWNWSAKGKIN-TSVVPMFSGNGEV 172 (191)
Q Consensus 133 ~gcqdLAk~k~~s~~~il~w~~K~~~~-ts~v~mfsgnge~ 172 (191)
..|+||. +|..|++=..-=|.. |.-.|+|-|||..
T Consensus 6 s~C~dl~-----sE~~lleCi~~Ck~dlsaEsPv~PGn~hl 41 (45)
T PF08384_consen 6 SSCQDLS-----SESNLLECIQACKSDLSAESPVFPGNGHL 41 (45)
T ss_pred chhhccc-----ccHHHHHHHHHccccccCCCCccCCCccc
Confidence 3688887 888888877654444 4457999999953
No 8
>PLN00064 photosystem II protein Psb27; Provisional
Probab=41.81 E-value=36 Score=29.01 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=50.1
Q ss_pred cccccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccceeeeecceecCCC
Q 029577 52 SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPEN 131 (191)
Q Consensus 52 ~~~~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~n 131 (191)
+...++..+||.+|.+.++++.+ +..-+..+|.++-..||.+...+ +=++=|- +|..|..
T Consensus 27 ~~~~~~~~~rr~~~~~~~~~~~~-~~~~~~~~a~a~~~g~Y~~DT~a---Vi~~lr~----------------tI~L~~d 86 (166)
T PLN00064 27 PPPRRNHLLRREFLSLATTILTS-AALLPVAPAFAASDEEYVKETKD---VIGKVRS----------------TINMDKT 86 (166)
T ss_pred CchhhhhhHHHHHHHHHHHHHHH-HHhccCcchhhccCCChHHHHHH---HHHHHHH----------------HHcCCCC
Confidence 44456666899999876554443 23344555767777777765543 3333333 2333332
Q ss_pred ccchhhHHhhhhccchhhhhhhcccccccce
Q 029577 132 FTGCQDLAKQKCHSSRMIWNWSAKGKINTSV 162 (191)
Q Consensus 132 f~gcqdLAk~k~~s~~~il~w~~K~~~~ts~ 162 (191)
- .+.++...+.-+.|-.|..|-|-..+|
T Consensus 87 d---p~~a~a~aeaR~~iNdyvSrYRr~~~v 114 (166)
T PLN00064 87 D---PNVADAVAELRETSNSWVAKYRREKAL 114 (166)
T ss_pred C---ccHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 2 233444456667788888887766554
No 9
>PF05757 PsbQ: Oxygen evolving enhancer protein 3 (PsbQ); InterPro: IPR008797 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbQ. Both PsbQ and PsbP (IPR002683 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. The crystal structure of PsbQ from spinach revealed a 4-helical bundle polypeptide. The distribution of positive and negative charges on the protein surface might explain the ability of PsbQ to increase the binding of chloride and calcium ions and make them available to PSII [].; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 1VYK_A 1NZE_A 3LS1_A 3LS0_A.
Probab=37.81 E-value=8.7 Score=32.76 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=0.0
Q ss_pred cceeeeeccccccccCCchhHHHHHHHHH
Q 029577 42 PVIRAQQVDVSKESRGTDGRRAAMALLAV 70 (191)
Q Consensus 42 Pvira~~~~~~~~~~~~~gRRaaL~~LAa 70 (191)
+++|+++ .......+||++|.+|++
T Consensus 16 ~~vra~~----~~~~~~~~RRa~l~~l~a 40 (202)
T PF05757_consen 16 VVVRASQ----SPAQQQTSRRAVLGSLLA 40 (202)
T ss_dssp -----------------------------
T ss_pred ceecccc----CcccccccHHHHHHHHHH
Confidence 5678876 223445789999884443
No 10
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=35.64 E-value=40 Score=27.24 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=35.2
Q ss_pred ccceeeeecceecCCCccchhhHHhhhhccchhhhhhhcccccccceeeeeecCCccccccccceeecCCccc
Q 029577 116 ARAYTVQFGTCKFPENFTGCQDLAKQKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMYL 188 (191)
Q Consensus 116 aRaytv~fG~ckfP~nf~gcqdLAk~k~~s~~~il~w~~K~~~~ts~v~mfsgnge~~q~~~~n~~~~~~~~~ 188 (191)
.=..+|.+|.+.||.+..|-.=+- -| .--+|-+.-|+|+-.-.. |..|||+-+
T Consensus 71 ~y~v~v~~~~~~FPtK~YG~~~~P---------------aG--~YeAlrI~IG~g~G~NWW---CVLfPpLCf 123 (130)
T PF09551_consen 71 DYPVKVELGRFYFPTKTYGDIVLP---------------AG--EYEALRITIGEGKGHNWW---CVLFPPLCF 123 (130)
T ss_pred CCcEEEEEEeeeCCCceECCEecc---------------CC--ceEEEEEEecCccCcceE---EEecCCcee
Confidence 335789999999999988833222 11 223566677888654333 999999743
No 11
>TIGR02811 formate_TAT formate dehydrogenase region TAT target. Members of this uncharacterized protein family are all small, extending 70 or fewer residues from their respective likely start codons. All have the twin-arginine-dependent tranport (TAT) signal sequence at the N-terminus and a conserved 20-residue C-terminal region that includes the motif Y-[HRK]-X-[TS]-X-H-[IV]-X-X-[YF]-Y. The TAT signal sequence suggests a bound cofactor. All members are encoded near genes for subunits of formate dehydrogenase, and may themselves be a subunit or accessory protein.
Probab=33.81 E-value=56 Score=23.31 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=10.7
Q ss_pred cCCchhHHHHHHHHH
Q 029577 56 RGTDGRRAAMALLAV 70 (191)
Q Consensus 56 ~~~~gRRaaL~~LAa 70 (191)
..+.+||-+|-+|+.
T Consensus 6 ~~~~sRR~Flk~lg~ 20 (66)
T TIGR02811 6 KADPSRRDLLKGLGV 20 (66)
T ss_pred cCCccHHHHHHHHHH
Confidence 445689998876655
No 12
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=31.27 E-value=61 Score=29.07 Aligned_cols=42 Identities=36% Similarity=0.345 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHHHHhhhhccccccchhhHHH--HHHHhhhhhhh
Q 029577 58 TDGRRAAMALLAVTLFTTATAAASSSANAGVIDE--YLERSKANKEL 102 (191)
Q Consensus 58 ~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~d--yL~KSkaNKEL 102 (191)
..+||.+|++++.++... +...+|++..=|+ -.-|.|.++.-
T Consensus 49 ~~srr~~l~~~~ga~a~~---~~~~pa~aay~~~anvfg~~k~~~gF 92 (260)
T PLN00042 49 AVSRRAALALLAGAAAAG---AKVSPANAAYGESANVFGKPKTNTGF 92 (260)
T ss_pred cccHHHHHHHHHHHHHhh---cccCchhhhhcchhhccCCCCCCCCC
Confidence 368999988888753322 5566666655433 23345544443
No 13
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=30.45 E-value=58 Score=27.52 Aligned_cols=53 Identities=19% Similarity=0.365 Sum_probs=35.6
Q ss_pred cccceeeeecceecCCCccchhhHHhhhhccchhhhhhhcccccccceeeeeecCCccccccccceeecCCcc
Q 029577 115 FARAYTVQFGTCKFPENFTGCQDLAKQKCHSSRMIWNWSAKGKINTSVVPMFSGNGEVGQLISLNILFYPPMY 187 (191)
Q Consensus 115 faRaytv~fG~ckfP~nf~gcqdLAk~k~~s~~~il~w~~K~~~~ts~v~mfsgnge~~q~~~~n~~~~~~~~ 187 (191)
+.-..++++|.|.||.+-.|---+- --+--+|-+.-|+|+-.-.. |..|||+-
T Consensus 105 ~~y~v~v~~~~~~FPtK~YG~~~~P-----------------aG~YeAlrI~IG~g~G~NWW---CVlfPpLC 157 (168)
T TIGR02837 105 ADYKVRVELGKYSFPTKLYGNIVLP-----------------AGEYEALRILIGEGAGANWW---CVVFPPLC 157 (168)
T ss_pred CCCCeEEEEEEEeCCCcccCCEecc-----------------CCceEEEEEEecCcCCcceE---EEecCcce
Confidence 3446889999999999887743222 11234566777887744332 99999974
No 14
>PF14285 DUF4367: Domain of unknown function (DUF4367)
Probab=26.48 E-value=81 Score=23.31 Aligned_cols=30 Identities=27% Similarity=0.336 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHhhhhccccccchhhHH
Q 029577 61 RRAAMALLAVTLFTTATAAASSSANAGVID 90 (191)
Q Consensus 61 RRaaL~~LAa~l~~tAa~a~a~~A~Agvi~ 90 (191)
||.|++++|+.++..++...+...+..+++
T Consensus 3 ~r~a~~~~a~~i~~~~~~~t~~a~~~~~~~ 32 (168)
T PF14285_consen 3 KRAAVAAAAVIILVFAASMTVQAVREKVYN 32 (168)
T ss_pred HHHHHHHHHHHHHHHhHhEEehHHhHHHHh
Confidence 566666666555544444444444455554
No 15
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=26.38 E-value=80 Score=26.01 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccceeeeecceecCCCccchhhHHhhh
Q 029577 63 AAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQK 142 (191)
Q Consensus 63 aaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k 142 (191)
++.++|..+|+.++ .++++..+|..+|.+.+.+ .-++=|- ++.-|..--+ .++..
T Consensus 11 ~lal~L~~~l~l~~---c~~~~~~~Ltg~Y~~DT~~---Vi~tlr~----------------~i~lpkd~p~---~~~a~ 65 (135)
T TIGR03044 11 ALALVLGLCLLLTA---CSGAAKTRLTGDYVEDTLA---VIQTLRE----------------AIDLPDDDPN---KSEAQ 65 (135)
T ss_pred HHHHHHHHHHHHhc---ccCCCcccccchHHHHHHH---HHHHHHH----------------HHcCCCCCcc---HHHHH
Confidence 35566666677663 4446789999999987654 2222232 1222332222 22222
Q ss_pred hccchhhhhhhcccccccce
Q 029577 143 CHSSRMIWNWSAKGKINTSV 162 (191)
Q Consensus 143 ~~s~~~il~w~~K~~~~ts~ 162 (191)
.+.-+.|-+|..+-|-...|
T Consensus 66 ~~ar~~indyvsrYRr~~~v 85 (135)
T TIGR03044 66 AEARQLINDYISRYRRRPRV 85 (135)
T ss_pred HHHHHHHHHHHHHhcCCCCc
Confidence 34456678888887766544
No 16
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=26.05 E-value=65 Score=21.39 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=10.3
Q ss_pred CCchhHHHHHHHHHHHHHh
Q 029577 57 GTDGRRAAMALLAVTLFTT 75 (191)
Q Consensus 57 ~~~gRRaaL~~LAa~l~~t 75 (191)
...+||-.|.+.++++++.
T Consensus 7 ~~~~RRdFL~~at~~~gav 25 (41)
T PF10399_consen 7 VDPTRRDFLTIATSAVGAV 25 (41)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3467888776666555443
No 17
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=25.51 E-value=22 Score=25.56 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.8
Q ss_pred chhhHHHHHHHhhhhhhhhhhhhhc
Q 029577 85 NAGVIDEYLERSKANKELNDQKRLA 109 (191)
Q Consensus 85 ~Agvi~dyL~KSkaNKELNDKkRla 109 (191)
..-++..|=-.||+.||+=|||+|+
T Consensus 19 ~~~LIaGyntms~eEk~~~D~~~l~ 43 (97)
T PF12650_consen 19 GYFLIAGYNTMSKEEKEKYDKKKLC 43 (97)
T ss_pred cccchhhcccCCHHHHHHhhHHHHH
Confidence 3468889999999999999999994
No 18
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=24.89 E-value=79 Score=24.13 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=19.0
Q ss_pred ccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHH
Q 029577 55 SRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLE 94 (191)
Q Consensus 55 ~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~ 94 (191)
+.+|..|-..++.| ...+ .+.....+++||+.
T Consensus 131 C~aGKDRTG~~~al----ll~~----lGV~~~~I~~DY~l 162 (164)
T PF13350_consen 131 CTAGKDRTGVVAAL----LLSL----LGVPDEDIIADYLL 162 (164)
T ss_dssp -SSSSSHHHHHHHH----HHHH----TT--HHHHHHHHHG
T ss_pred CCCCCccHHHHHHH----HHHH----cCCCHHHHHHHHHh
Confidence 45666775544443 3344 67778999999974
No 19
>PF11022 DUF2611: Protein of unknown function (DUF2611); InterPro: IPR021278 This family is conserved in the Dikarya of Fungi. The function is not known.
Probab=24.06 E-value=1.4e+02 Score=22.11 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.5
Q ss_pred hhhHHHHHHHhhhhhh
Q 029577 86 AGVIDEYLERSKANKE 101 (191)
Q Consensus 86 Agvi~dyL~KSkaNKE 101 (191)
...|+|||++-.+-++
T Consensus 54 E~fIk~fl~~~~~e~~ 69 (71)
T PF11022_consen 54 EKFIKEFLKEHEKEEK 69 (71)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4689999988765433
No 20
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=23.42 E-value=62 Score=31.84 Aligned_cols=50 Identities=28% Similarity=0.506 Sum_probs=32.5
Q ss_pred eeecceecCCCccchhhHHh----hhhccchhhhhhhcccccccceeeeeecCCcc
Q 029577 121 VQFGTCKFPENFTGCQDLAK----QKCHSSRMIWNWSAKGKINTSVVPMFSGNGEV 172 (191)
Q Consensus 121 v~fG~ckfP~nf~gcqdLAk----~k~~s~~~il~w~~K~~~~ts~v~mfsgnge~ 172 (191)
|.-|+|-||+.+.||-|.-+ |-||--.+. .-+-+|...-.|+-.||+|-+
T Consensus 32 VRtgtCsF~VkYLG~VEV~ESRGM~vCE~AlK~--Lkas~rk~VkavL~VS~DGLR 85 (543)
T KOG3537|consen 32 VRTGTCSFPVKYLGHVEVFESRGMQVCEDALKV--LKASRRKPVKAVLWVSGDGLR 85 (543)
T ss_pred hccceeeeeeeeeeeEEEecccCcHHHHHHHHH--HHHhccCcceeEEEEccCceE
Confidence 44699999999999655431 222222222 223566777789999999964
No 21
>PF15240 Pro-rich: Proline-rich
Probab=22.35 E-value=54 Score=27.99 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhccccccchhhHHH
Q 029577 64 AMALLAVTLFTTATAAASSSANAGVIDE 91 (191)
Q Consensus 64 aL~~LAa~l~~tAa~a~a~~A~Agvi~d 91 (191)
||+||.+||++- .+|-..+-+|..|
T Consensus 2 LlVLLSvALLAL---SSAQ~~dEdv~~e 26 (179)
T PF15240_consen 2 LLVLLSVALLAL---SSAQSTDEDVSQE 26 (179)
T ss_pred hhHHHHHHHHHh---hhccccccccccc
Confidence 677777777654 4555566666543
No 22
>PRK09133 hypothetical protein; Provisional
Probab=21.60 E-value=65 Score=28.43 Aligned_cols=27 Identities=37% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhccccccchhhHHH
Q 029577 65 MALLAVTLFTTATAAASSSANAGVIDE 91 (191)
Q Consensus 65 L~~LAa~l~~tAa~a~a~~A~Agvi~d 91 (191)
|.+||++..+.|+++.++.+.+.--++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (472)
T PRK09133 12 LALLAAAAATGAAAAAAPAAPTADQQA 38 (472)
T ss_pred HHHhhccchhhhhhhcCCCCcchhHHH
Confidence 344444444444444444444433333
No 23
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.26 E-value=28 Score=29.20 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=10.7
Q ss_pred HHhhhhhhhhhh-hhhccccccccc
Q 029577 94 ERSKANKELNDQ-KRLATSGANFAR 117 (191)
Q Consensus 94 ~KSkaNKELNDK-kRlaTs~aNfaR 117 (191)
+.-++.+|+.|+ .|+...-.||.|
T Consensus 43 ~le~e~~elkd~~lR~~AefeN~rK 67 (185)
T PRK14139 43 EAEAKAAELQDSFLRAKAETENVRR 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555443 344444444433
No 24
>PRK07474 sulfur oxidation protein SoxY; Provisional
Probab=21.00 E-value=1.4e+02 Score=24.54 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=13.6
Q ss_pred chhhhhhhcccccccceeeee
Q 029577 146 SRMIWNWSAKGKINTSVVPMF 166 (191)
Q Consensus 146 ~~~il~w~~K~~~~ts~v~mf 166 (191)
-+.|+-+.|+..+.-...-.|
T Consensus 86 V~~I~l~vd~NP~Pl~a~f~l 106 (154)
T PRK07474 86 VKAIHVFADGNPQPGVATFHF 106 (154)
T ss_pred eeEEEEEECCCCCCEEEEEEe
Confidence 346777777776666665555
No 25
>PF12318 FAD-SLDH: Membrane bound FAD containing D-sorbitol dehydrogenase ; InterPro: IPR024651 There are two types of membrane-bound D-sorbitol dehydrogenase: PQQ-SLDH (pyrroloquinoline quinone sorbitol dehydrogenase) and FAD-SLDH (FAD-containing sorbitol dehydrogenase). FAD-SLDH is involved in oxidation of D-sorbitol to L-sorbose and consists of a large, small and cytochrome c subunits []. This entry represents the small subunit of the FAD-containing D-sorbitol dehydrogenase. This family of proteins is found in bacteria and contains a conserved ALM sequence motif. The role of the small subunit is unknown. Gluconate dehydrogenases and fructose dehydrogenases are also included in this entry.
Probab=20.05 E-value=1.5e+02 Score=24.14 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=10.7
Q ss_pred cchhhHHHHHHHhhh
Q 029577 84 ANAGVIDEYLERSKA 98 (191)
Q Consensus 84 A~Agvi~dyL~KSka 98 (191)
+...-+++++.=|..
T Consensus 34 ~~~~~~~~Fm~lS~~ 48 (168)
T PF12318_consen 34 ASSADLDDFMALSQL 48 (168)
T ss_pred CCcccHHHHHHHHHH
Confidence 344557899988875
Done!