Query 029577
Match_columns 191
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 29240
Date Tue Mar 26 01:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029577.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029577hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_N PSAN, PSI-N, photosyste 100.0 2.3E-67 8E-72 428.3 -4.5 139 1-143 1-142 (170)
2 3lw5_N Photosystem I-N subunit 100.0 9.7E-35 3.3E-39 216.5 -4.1 57 87-143 1-57 (85)
3 3ux2_A MIP18 family protein FA 87.8 0.11 3.7E-06 40.4 0.2 15 97-111 101-115 (130)
4 2dii_A TFIIH basal transcripti 28.2 5 0.00017 28.1 -2.0 27 95-121 9-35 (61)
5 2j6v_A UV endonuclease, UVDE; 19.0 25 0.00087 28.8 0.2 34 136-169 53-91 (301)
6 3drq_C GP41 peptide epitope; H 15.5 76 0.0026 19.3 1.7 22 87-108 4-25 (35)
7 4g9e_A AHL-lactonase, alpha/be 15.3 55 0.0019 22.5 1.1 24 83-106 256-279 (279)
8 2be6_D Voltage-dependent L-typ 12.7 98 0.0034 20.0 1.7 15 88-102 16-30 (37)
9 4i1l_A Scurfin, forkhead box p 12.5 79 0.0027 23.7 1.4 24 122-145 11-34 (93)
10 3fy6_A Integron cassette prote 12.0 50 0.0017 25.9 0.1 23 163-187 54-76 (126)
No 1
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=100.00 E-value=2.3e-67 Score=428.31 Aligned_cols=139 Identities=68% Similarity=1.047 Sum_probs=56.3
Q ss_pred CccccccceecceeeccCCCCcccccceeeccC---CcccccCccceeeeeccccccccCCchhHHHHHHHHHHHHHhhh
Q 029577 1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT 77 (191)
Q Consensus 1 maamnssvlacnyaisg~~g~sel~~k~~sv~s---p~~~~~klPvira~~~~~~~~~~~~~gRRaaL~~LAa~l~~tAa 77 (191)
||+|||||||||||||| ++|||+|++|||| |+++|+|||+||+||+.+++ ....++||++|++||++|+++|+
T Consensus 1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~~~-~~~~~~rRaAl~~LaA~l~~~aa 76 (170)
T 2wsc_N 1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTE-SKSDQGRRSALVYLAATLFTAAA 76 (170)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeeccc-ccccchhHHHHHHHHHHHHHHhh
Confidence 89999999999999999 7999999999999 88999999999999987554 55567999999999999999998
Q ss_pred hccccccchhhHHHHHHHhhhhhhhhhhhhhcccccccccceeeeecceecCCCccchhhHHhhhh
Q 029577 78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKC 143 (191)
Q Consensus 78 ~a~a~~A~Agvi~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~ 143 (191)
++++++|||||++|||+|||+|||||||||||||++||+|+|||+||+|+||+||||||||||||+
T Consensus 77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~ 142 (170)
T 2wsc_N 77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKK 142 (170)
T ss_dssp ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTC
T ss_pred cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCC
Confidence 889999999999999999999999999999999999999999999999999999999999999986
No 2
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=99.97 E-value=9.7e-35 Score=216.54 Aligned_cols=57 Identities=86% Similarity=1.352 Sum_probs=55.4
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhcccccccccceeeeecceecCCCccchhhHHhhhh
Q 029577 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKC 143 (191)
Q Consensus 87 gvi~dyL~KSkaNKELNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLAk~k~ 143 (191)
||++|||+||++|||||||||||||+|||+|+|||+||+|+||+|||||||||+||.
T Consensus 1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~ 57 (85)
T 3lw5_N 1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKK 57 (85)
T ss_dssp CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTB
T ss_pred CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCC
Confidence 689999999999999999999999999999999999999999999999999999875
No 3
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=87.84 E-value=0.11 Score=40.41 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhccc
Q 029577 97 KANKELNDQKRLATS 111 (191)
Q Consensus 97 kaNKELNDKkRlaTs 111 (191)
.-||.||||+|.|..
T Consensus 101 ~vnKQl~DKERvaAA 115 (130)
T 3ux2_A 101 DINKQINDKERVAAA 115 (130)
T ss_dssp CHHHHHHCHHHHHHH
T ss_pred HHHHhhhhHHHHHHH
Confidence 469999999999653
No 4
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=28.22 E-value=5 Score=28.08 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.5
Q ss_pred Hhhhhhhhhhhhhhcccccccccceee
Q 029577 95 RSKANKELNDQKRLATSGANFARAYTV 121 (191)
Q Consensus 95 KSkaNKELNDKkRlaTs~aNfaRaytv 121 (191)
|-|+||||..|+||..++.+..+-|+.
T Consensus 9 k~k~n~ELe~k~rlL~eN~~L~qLyk~ 35 (61)
T 2dii_A 9 KRKANKELEEKNRMLQEDPVLFQLYKD 35 (61)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHhccHhHHHHHHHHHhCHHHHHHHHH
Confidence 568899999999999999998887764
No 5
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=19.00 E-value=25 Score=28.78 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=26.7
Q ss_pred hhHHhhhhccchhhhhhhcccc-----cccceeeeeecC
Q 029577 136 QDLAKQKCHSSRMIWNWSAKGK-----INTSVVPMFSGN 169 (191)
Q Consensus 136 qdLAk~k~~s~~~il~w~~K~~-----~~ts~v~mfsgn 169 (191)
++++.+-.+....++.|+.+-. ++...+|+|++|
T Consensus 53 ~~~~~~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~ 91 (301)
T 2j6v_A 53 REKAAENLRDLERILRFNADHGFALFRIGQHLIPFASHP 91 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEeccCcccccCCC
Confidence 4566677788889999998764 566778999987
No 6
>3drq_C GP41 peptide epitope; HIV-1, 2F5, NMAB, immune system; 2.00A {Homo sapiens} PDB: 3d0l_C 3drt_C 3egs_C
Probab=15.47 E-value=76 Score=19.29 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.5
Q ss_pred hhHHHHHHHhhhhhhhhhhhhh
Q 029577 87 GVIDEYLERSKANKELNDQKRL 108 (191)
Q Consensus 87 gvi~dyL~KSkaNKELNDKkRl 108 (191)
+.|-.+|++|..-.|.|.|+=|
T Consensus 4 ~~Iy~lLe~sq~qqekNek~Ll 25 (35)
T 3drq_C 4 ALFLGFLGAAGSKKXKNEQELL 25 (35)
T ss_pred hHHHHHHHHHHhhHHhhHHHHH
Confidence 5678899999999999988754
No 7
>4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A
Probab=15.27 E-value=55 Score=22.46 Aligned_cols=24 Identities=0% Similarity=0.115 Sum_probs=16.3
Q ss_pred ccchhhHHHHHHHhhhhhhhhhhh
Q 029577 83 SANAGVIDEYLERSKANKELNDQK 106 (191)
Q Consensus 83 ~A~Agvi~dyL~KSkaNKELNDKk 106 (191)
..-+..|.++|++.+.+++-|+|+
T Consensus 256 ~~~~~~i~~fl~~~~~~~~~~~~~ 279 (279)
T 4g9e_A 256 AEFDAYLARFIRDCTQLEHHHHHH 279 (279)
T ss_dssp HHHHHHHHHHHHHHHSSCCCC---
T ss_pred HHHHHHHHHHHHHhhhhhhhhccC
Confidence 344567889999988888877664
No 8
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=12.72 E-value=98 Score=19.98 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.2
Q ss_pred hHHHHHHHhhhhhhh
Q 029577 88 VIDEYLERSKANKEL 102 (191)
Q Consensus 88 vi~dyL~KSkaNKEL 102 (191)
|||||..|-|.-||.
T Consensus 16 LIQdyFRkfkkrke~ 30 (37)
T 2be6_D 16 LIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999999888876
No 9
>4i1l_A Scurfin, forkhead box protein P3; FOXP3, dimerization, complex ensemble, stability, regulatory activity, acetyation, DNA-binding, metal-binding; 2.10A {Mus musculus}
Probab=12.54 E-value=79 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=14.0
Q ss_pred eecceecCCCccchhhHHhhhhcc
Q 029577 122 QFGTCKFPENFTGCQDLAKQKCHS 145 (191)
Q Consensus 122 ~fG~ckfP~nf~gcqdLAk~k~~s 145 (191)
+-|.|++|.=.+-|+|...--+|.
T Consensus 11 ~~g~CkWPGCe~~~ed~~~FlkHL 34 (93)
T 4i1l_A 11 ANGVCKWPGCEKVFEEPEEFLKHC 34 (93)
T ss_dssp -------CCSTTTTHHHHHHHHHH
T ss_pred hCCcccCCCCCCcccCHHHHHHHh
Confidence 359999999999999988666654
No 10
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=11.95 E-value=50 Score=25.91 Aligned_cols=23 Identities=39% Similarity=0.342 Sum_probs=19.2
Q ss_pred eeeeecCCccccccccceeecCCcc
Q 029577 163 VPMFSGNGEVGQLISLNILFYPPMY 187 (191)
Q Consensus 163 v~mfsgnge~~q~~~~n~~~~~~~~ 187 (191)
=|..|| |.+|.||-|=-.|||-.
T Consensus 54 DP~Ws~--~~L~~IM~ND~iYPP~i 76 (126)
T 3fy6_A 54 DPEWSE--ETLQDIMNNDSVYPPEI 76 (126)
T ss_dssp EEEECS--SCHHHHHHTTTCCCBTT
T ss_pred Cccccc--chHHHHhhCCCcCChHH
Confidence 477776 78999999999999953
Done!