Query 029577
Match_columns 191
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 13730
Date Tue Mar 26 01:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029577.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029577hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2diia1 a.240.1.1 (A:8-55) TFI 58.9 0.32 2.4E-05 31.6 -2.3 25 95-119 2-26 (48)
2 d1eiwa_ c.23.3.1 (A:) Hypothet 57.4 2 0.00015 31.3 1.6 36 134-169 13-48 (111)
3 d1ywfa1 c.45.1.5 (A:4-275) Pho 35.3 15 0.0011 27.4 3.4 44 55-106 157-200 (272)
4 d1xo1a2 c.120.1.2 (A:19-185) T 13.8 49 0.0036 23.0 2.4 26 162-187 128-153 (167)
5 d1guqa2 d.13.1.2 (A:178-348) G 13.2 34 0.0024 23.3 1.3 95 87-187 19-127 (171)
6 d1xria_ c.45.1.1 (A:) Putative 10.0 1.4E+02 0.01 19.3 3.8 42 55-104 99-140 (151)
7 d1tfra2 c.120.1.2 (A:12-180) T 8.8 76 0.0056 22.4 2.0 26 162-187 137-163 (169)
8 d1ve4a1 c.94.1.1 (A:1-206) ATP 8.6 16 0.0012 27.4 -2.0 38 102-139 105-142 (206)
9 d1mlwa_ d.178.1.1 (A:) Tryptop 7.9 32 0.0023 27.8 -0.5 13 119-131 211-223 (290)
10 d1h3da1 c.94.1.1 (A:5-224) ATP 7.2 39 0.0028 25.5 -0.4 19 106-124 121-139 (220)
No 1
>d2diia1 a.240.1.1 (A:8-55) TFIIH basal transcription factor complex p62 subunit, BTF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.86 E-value=0.32 Score=31.55 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=19.8
Q ss_pred Hhhhhhhhhhhhhhcccccccccce
Q 029577 95 RSKANKELNDQKRLATSGANFARAY 119 (191)
Q Consensus 95 KSkaNKELNDKkRlaTs~aNfaRay 119 (191)
|.|+||||.+|-||...+...---|
T Consensus 2 k~k~~keLeEKnr~L~enp~L~qLY 26 (48)
T d2diia1 2 KRKANKELEEKNRMLQEDPVLFQLY 26 (48)
T ss_dssp CCCSCHHHHHHHHHHHHCHHHHHHH
T ss_pred chhHHHHHHHHhhccccCHHHHHHH
Confidence 5789999999999988776654444
No 2
>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=57.36 E-value=2 Score=31.28 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=33.7
Q ss_pred chhhHHhhhhccchhhhhhhcccccccceeeeeecC
Q 029577 134 GCQDLAKQKCHSSRMIWNWSAKGKINTSVVPMFSGN 169 (191)
Q Consensus 134 gcqdLAk~k~~s~~~il~w~~K~~~~ts~v~mfsgn 169 (191)
.|||-++-++.+|+++..|.|...-+.|+|-+..|-
T Consensus 13 ~~~d~~~~~er~e~~~~~Wid~~~~~~~vvIVL~G~ 48 (111)
T d1eiwa_ 13 EVEDYRVFLERLEQSGLEWRPATPEDADAVIVLAGL 48 (111)
T ss_dssp CSHHHHHHHHHHHHHCSCEEECCSSSCSEEEEEGGG
T ss_pred chhhHHHHHHHHHHhhhcchhccccCCCEEEEEeec
Confidence 799999999999999999999999999999998884
No 3
>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=35.31 E-value=15 Score=27.39 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=28.9
Q ss_pred ccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhh
Q 029577 55 SRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQK 106 (191)
Q Consensus 55 ~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELNDKk 106 (191)
+.+|..|- +++++|+..+ .+..+..+++||+.-....++.+++.
T Consensus 157 CtaGKDRT----G~~aallL~l----lGV~~e~I~~DYllSn~~~~~~~~~~ 200 (272)
T d1ywfa1 157 CFAGKDRT----GFVVALVLEA----VGLDRDVIVADYLRSNDSVPQLRARI 200 (272)
T ss_dssp CSSSSSHH----HHHHHHHHHH----TTCCHHHHHHHHHGGGGGHHHHHHHH
T ss_pred cCCCCcch----HHHHHHHHHH----cCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 44455554 3445555554 77889999999998776666655543
No 4
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=13.83 E-value=49 Score=23.00 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.5
Q ss_pred eeeeeecCCccccccccceeecCCcc
Q 029577 162 VVPMFSGNGEVGQLISLNILFYPPMY 187 (191)
Q Consensus 162 ~v~mfsgnge~~q~~~~n~~~~~~~~ 187 (191)
-|-+.||+..-.|++..|+..|.|+.
T Consensus 128 ~v~IvS~DkD~~QLv~~~v~~~~~~~ 153 (167)
T d1xo1a2 128 HVWLISTDGDWDTLLTDKVSRFSFTT 153 (167)
T ss_dssp CEEEECSCGGGGGGCBTTEEEECTTT
T ss_pred EEEEEeCCccHHHheeCCEEEEeCCC
Confidence 36789999999999999999999874
No 5
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=13.18 E-value=34 Score=23.27 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhccccccccccee----eee-cceecCCCccc-hhhHHhhh----hccchhhhhhhccc
Q 029577 87 GVIDEYLERSKANKELNDQKRLATSGANFARAYT----VQF-GTCKFPENFTG-CQDLAKQK----CHSSRMIWNWSAKG 156 (191)
Q Consensus 87 gvi~dyL~KSkaNKELNDKkRlaTs~aNfaRayt----v~f-G~ckfP~nf~g-cqdLAk~k----~~s~~~il~w~~K~ 156 (191)
.|+.|++ ++|+.+++|++-.+++|- ++. .+. -+.-.|.+-.. -.||..+- ....+.+...+++.
T Consensus 19 clfcdii-----~~E~~~~~RiV~e~e~~~-af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~L~~~~~~v~~~l~~~ 92 (171)
T d1guqa2 19 PMLVDYV-----QRELADGSRTVVETEHWL-AVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNL 92 (171)
T ss_dssp CHHHHHH-----HHHHHHCTTEEEECSSEE-EECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHH-----HhhccCCCeEEEECCeEE-EEEcCCCCCcceEEEecchhcCChhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3555555 478999999987777652 111 111 22333433211 11222111 13445555666554
Q ss_pred cccc-ceeeeee-c--CCccccccccceeecCCcc
Q 029577 157 KINT-SVVPMFS-G--NGEVGQLISLNILFYPPMY 187 (191)
Q Consensus 157 ~~~t-s~v~mfs-g--nge~~q~~~~n~~~~~~~~ 187 (191)
-.+. ..+-++. + +|....++-..+-++||++
T Consensus 93 ~~~~~~y~~~~~~~p~~~~~~~~~H~Hihi~Pr~~ 127 (171)
T d1guqa2 93 FQCSFPYSMGWHGAPFNGEENQHWQLHAHFYPPLL 127 (171)
T ss_dssp HTSCCCEEEEEECCCSSSSCCTTCCCEEEEECCEE
T ss_pred ccCCcchhhhhhcCccccCCCceeEEEEEEccCcc
Confidence 4332 2344433 2 3444555666788899864
No 6
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=9.99 E-value=1.4e+02 Score=19.34 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=25.7
Q ss_pred ccCCchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhh
Q 029577 55 SRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELND 104 (191)
Q Consensus 55 ~~~~~gRRaaL~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKELND 104 (191)
+..|.+|-+.+.++.- .+ .+-....+++||+.-.-......|
T Consensus 99 C~~GkdRTG~v~a~~l----~~----~g~~~~~i~~dy~~~~~~~~~~~~ 140 (151)
T d1xria_ 99 CKRGKHRTGCLVGCLR----KL----QKWCLTSIFDEYQRFAAAKARVSD 140 (151)
T ss_dssp CSSSSSHHHHHHHHHH----HH----TTBCHHHHHHHHHHHHGGGCCHHH
T ss_pred cCCCchHHHHHHHHHH----HH----cCCCHHHHHHHHHHhccCcccHHH
Confidence 5567777665443332 22 677889999999875544333333
No 7
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]}
Probab=8.81 E-value=76 Score=22.38 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.2
Q ss_pred eeeeeecCCccccccc-cceeecCCcc
Q 029577 162 VVPMFSGNGEVGQLIS-LNILFYPPMY 187 (191)
Q Consensus 162 ~v~mfsgnge~~q~~~-~n~~~~~~~~ 187 (191)
-|-++|++..-.|++. +|+-.|-|+-
T Consensus 137 ~vvIvS~DkD~~QLv~~~~V~~~~p~~ 163 (169)
T d1tfra2 137 KILIISSDGDFTQLHKYPNVKQWSPMH 163 (169)
T ss_dssp CEEEECCCGGGGGGTTSTTEEEEETTT
T ss_pred cEEEEeCCCCHHHhCcCCCeEEeeCCC
Confidence 4778999999999998 9988887763
No 8
>d1ve4a1 c.94.1.1 (A:1-206) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermus thermophilus [TaxId: 274]}
Probab=8.55 E-value=16 Score=27.44 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=21.8
Q ss_pred hhhhhhhcccccccccceeeeecceecCCCccchhhHH
Q 029577 102 LNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLA 139 (191)
Q Consensus 102 LNDKkRlaTs~aNfaRaytv~fG~ckfP~nf~gcqdLA 139 (191)
..+-+|.||.+.|..|.|-..-|.=-.-....|+-|+|
T Consensus 105 ~~~~~rIATkYpnit~~~~~~~gi~~~ii~~~Gs~E~a 142 (206)
T d1ve4a1 105 TGPIRRVATKYPNFTARLLKERGWAADVVELSGNIELA 142 (206)
T ss_dssp CSCCCEEEESCHHHHHHHHHHTTCCCEEEECSSCTHHH
T ss_pred cCCccEeeHHHHHHHHHHHHhcCCcceEEEEEcccccc
Confidence 34445777777777777765555422223344555555
No 9
>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.92 E-value=32 Score=27.78 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=10.9
Q ss_pred eeeeecceecCCC
Q 029577 119 YTVQFGTCKFPEN 131 (191)
Q Consensus 119 ytv~fG~ckfP~n 131 (191)
|||+||.|+=+.+
T Consensus 211 fTVEFGLi~e~g~ 223 (290)
T d1mlwa_ 211 FTVEFGLCKQDGQ 223 (290)
T ss_dssp TTTTTCEEEETTE
T ss_pred eeEeeeEEecCCc
Confidence 6999999997654
No 10
>d1h3da1 c.94.1.1 (A:5-224) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=7.17 E-value=39 Score=25.48 Aligned_cols=19 Identities=42% Similarity=0.489 Sum_probs=16.2
Q ss_pred hhhcccccccccceeeeec
Q 029577 106 KRLATSGANFARAYTVQFG 124 (191)
Q Consensus 106 kRlaTs~aNfaRaytv~fG 124 (191)
+|.||.+.|..|.|-..-|
T Consensus 121 ~RIATkYp~it~~y~~~~g 139 (220)
T d1h3da1 121 KRIATSYPHLLKRYLDQKG 139 (220)
T ss_dssp CEEEESCHHHHHHHHHHHT
T ss_pred CEEhhhhhHHHHHHHHhcc
Confidence 5999999999999866665
Done!