Query 029579
Match_columns 191
No_of_seqs 186 out of 1500
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 15:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029579.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029579hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 5.3E-41 1.2E-45 270.2 21.1 188 2-191 1-188 (224)
2 PLN02549 asparagine synthase ( 100.0 5.4E-41 1.2E-45 304.8 19.9 172 1-191 1-179 (578)
3 PRK09431 asnB asparagine synth 100.0 6.5E-41 1.4E-45 303.4 20.1 172 1-191 1-180 (554)
4 PTZ00077 asparagine synthetase 100.0 8.4E-41 1.8E-45 304.1 19.7 172 1-191 1-187 (586)
5 COG0367 AsnB Asparagine syntha 100.0 3.6E-40 7.7E-45 297.8 17.2 170 1-191 1-184 (542)
6 TIGR03104 trio_amidotrans aspa 100.0 3.9E-38 8.5E-43 287.5 19.6 158 1-178 1-168 (589)
7 cd00712 AsnB Glutamine amidotr 100.0 3.8E-37 8.2E-42 249.8 20.6 170 2-191 1-205 (220)
8 TIGR03108 eps_aminotran_1 exos 100.0 4.4E-37 9.5E-42 282.6 19.6 173 1-191 1-208 (628)
9 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 5.8E-37 1.3E-41 242.2 16.1 170 1-189 1-178 (181)
10 TIGR01536 asn_synth_AEB aspara 100.0 9.4E-36 2E-40 265.4 20.7 143 27-179 15-167 (467)
11 PRK08525 amidophosphoribosyltr 100.0 6.9E-35 1.5E-39 258.1 19.6 174 1-191 1-215 (445)
12 PRK07631 amidophosphoribosyltr 100.0 1.9E-34 4.2E-39 256.1 18.9 173 1-191 11-224 (475)
13 PF12481 DUF3700: Aluminium in 100.0 8.2E-34 1.8E-38 225.2 17.6 190 2-191 1-192 (228)
14 cd00714 GFAT Glutamine amidotr 100.0 2.6E-33 5.6E-38 226.9 18.5 170 2-191 1-212 (215)
15 PRK07272 amidophosphoribosyltr 100.0 2.3E-33 4.9E-38 249.7 19.6 174 1-191 11-226 (484)
16 PRK06781 amidophosphoribosyltr 100.0 4.5E-33 9.7E-38 247.4 19.7 173 1-191 11-224 (471)
17 KOG0571 Asparagine synthase (g 100.0 2.5E-34 5.3E-39 246.4 11.1 172 1-191 1-179 (543)
18 PRK06388 amidophosphoribosyltr 100.0 4.2E-33 9E-38 247.6 18.7 173 1-191 19-232 (474)
19 PRK09123 amidophosphoribosyltr 100.0 8.1E-33 1.8E-37 246.4 19.3 173 1-191 21-235 (479)
20 PRK07349 amidophosphoribosyltr 100.0 1.8E-32 3.9E-37 244.6 19.5 175 1-191 33-253 (500)
21 PLN02440 amidophosphoribosyltr 100.0 2.8E-32 6.1E-37 243.3 20.2 174 1-191 1-215 (479)
22 PRK09246 amidophosphoribosyltr 100.0 1.3E-32 2.9E-37 246.6 18.1 175 1-191 1-228 (501)
23 PRK07847 amidophosphoribosyltr 100.0 2E-32 4.4E-37 244.8 18.7 174 1-191 23-244 (510)
24 PRK08341 amidophosphoribosyltr 100.0 9E-32 2E-36 237.5 19.5 169 1-191 4-213 (442)
25 PRK00331 glucosamine--fructose 100.0 6.6E-32 1.4E-36 247.4 19.2 171 1-191 1-213 (604)
26 PRK05793 amidophosphoribosyltr 100.0 8.3E-32 1.8E-36 239.7 19.3 175 1-191 14-229 (469)
27 cd00715 GPATase_N Glutamine am 100.0 2.1E-31 4.6E-36 220.4 19.9 173 2-191 1-215 (252)
28 cd01907 GlxB Glutamine amidotr 100.0 1.3E-30 2.8E-35 215.4 18.1 173 2-191 1-246 (249)
29 TIGR01135 glmS glucosamine--fr 100.0 9.6E-31 2.1E-35 239.8 17.6 170 2-191 1-212 (607)
30 cd00352 Gn_AT_II Glutamine ami 100.0 8.2E-30 1.8E-34 204.8 19.7 179 2-191 1-219 (220)
31 TIGR01134 purF amidophosphorib 100.0 8.4E-30 1.8E-34 225.6 19.6 173 2-191 1-215 (442)
32 PTZ00295 glucosamine-fructose- 100.0 2.9E-29 6.2E-34 231.4 18.0 171 1-191 24-243 (640)
33 cd01909 betaLS_CarA_N Glutamin 100.0 3.1E-29 6.7E-34 200.3 14.3 106 74-191 50-178 (199)
34 PF13537 GATase_7: Glutamine a 100.0 7.4E-29 1.6E-33 184.9 11.3 106 63-177 10-125 (125)
35 COG0034 PurF Glutamine phospho 99.9 1.1E-26 2.3E-31 201.5 16.2 175 1-190 4-221 (470)
36 PTZ00394 glucosamine-fructose- 99.9 4.5E-26 9.8E-31 210.7 17.0 180 1-191 1-268 (670)
37 PLN02981 glucosamine:fructose- 99.9 9.5E-26 2.1E-30 209.0 16.9 178 1-191 1-265 (680)
38 PF13522 GATase_6: Glutamine a 99.9 1.3E-25 2.8E-30 169.2 14.3 120 42-171 1-133 (133)
39 KOG0572 Glutamine phosphoribos 99.9 1E-24 2.2E-29 185.1 14.9 177 1-190 1-228 (474)
40 COG0449 GlmS Glucosamine 6-pho 99.9 8.4E-23 1.8E-27 183.8 14.1 169 1-190 1-209 (597)
41 KOG0573 Asparagine synthase [A 99.8 5.4E-18 1.2E-22 146.8 12.8 165 1-189 1-171 (520)
42 cd00713 GltS Glutamine amidotr 99.7 1.8E-16 4E-21 138.5 12.8 129 51-190 201-388 (413)
43 cd01908 YafJ Glutamine amidotr 99.6 4E-15 8.6E-20 123.5 11.8 129 51-190 80-250 (257)
44 TIGR03442 conserved hypothetic 99.6 2.8E-14 6E-19 118.2 11.7 125 52-190 83-237 (251)
45 PF00310 GATase_2: Glutamine a 99.5 1.3E-13 2.7E-18 119.5 10.5 114 49-172 193-361 (361)
46 KOG1268 Glucosamine 6-phosphat 99.5 1.4E-13 3E-18 121.5 10.0 145 1-160 1-202 (670)
47 PRK11750 gltB glutamate syntha 99.1 4.8E-10 1E-14 109.8 10.9 65 124-190 332-398 (1485)
48 PF13230 GATase_4: Glutamine a 98.4 2.6E-06 5.7E-11 71.4 9.4 128 52-190 72-244 (271)
49 COG0067 GltB Glutamate synthas 98.0 7E-05 1.5E-09 65.1 10.4 119 50-178 201-347 (371)
50 PF09147 DUF1933: Domain of un 97.9 0.00025 5.5E-09 55.4 11.4 90 74-175 47-142 (201)
51 COG0121 Predicted glutamine am 95.9 0.056 1.2E-06 45.0 8.5 39 52-90 71-116 (252)
52 KOG0399 Glutamate synthase [Am 92.0 0.69 1.5E-05 46.2 7.8 49 125-175 407-455 (2142)
53 COG0067 GltB Glutamate synthas 87.3 0.47 1E-05 41.6 2.6 40 1-48 12-52 (371)
54 PF10736 DUF2527: Protein of u 70.3 1.4 3E-05 25.2 -0.1 9 1-9 1-9 (38)
55 PF00310 GATase_2: Glutamine a 56.8 7.6 0.00016 34.0 2.0 23 26-48 17-45 (361)
56 PF04566 RNA_pol_Rpb2_4: RNA p 55.6 19 0.00041 23.3 3.3 26 132-158 33-60 (63)
57 TIGR03823 FliZ flagellar regul 46.2 13 0.00029 28.7 1.6 19 74-92 33-51 (168)
58 PRK11582 flagella biosynthesis 45.3 14 0.00031 28.5 1.6 19 74-92 33-51 (169)
59 PF08973 TM1506: Domain of unk 41.2 12 0.00025 28.2 0.6 26 129-157 10-35 (134)
60 COG4911 Uncharacterized conser 28.9 69 0.0015 23.2 2.9 25 120-144 73-97 (123)
61 PF12594 DUF3764: Protein of u 25.4 32 0.0007 23.9 0.7 20 145-164 27-46 (86)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=5.3e-41 Score=270.19 Aligned_cols=188 Identities=64% Similarity=1.088 Sum_probs=162.2
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCCCCCCCCCeEeeCCcEEEEEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~~~~~lv~n 81 (191)
++||.+.++++|+|+++|.+.+. +..-.++++.+....|++..+.+++...++++..+...-.|.+++.++++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 57999999999999987766544 2233568888899999988888988899998765555667778888889999999
Q ss_pred EEEechhhhHHHhCCCCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 029579 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (191)
Q Consensus 82 G~I~N~~eL~~~l~~~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~ 161 (191)
|+|||+.+|+++|+...+.+|+++++++|++|+++|+.+..+++++|+|+|||+|||..++++++|||++|++||||+..
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 99999999999998745556666678999999777765667899999999999999999999999999999999999987
Q ss_pred CCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 162 ADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 162 ~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
.+|.++||||+++|...|.+.+++||||||
T Consensus 159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~ 188 (224)
T cd01910 159 ADGSVVFSDDVELVKASCGKSFAPFPKGCF 188 (224)
T ss_pred CCCEEEEEeCHHHhhhhhccEEEEECCCCE
Confidence 678999999999999999888999999997
No 2
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=5.4e-41 Score=304.80 Aligned_cols=172 Identities=24% Similarity=0.379 Sum_probs=148.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeC---CCCCCCCCeEeeCCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~ 77 (191)
||||+|..-.+.. .......+.+|.+.|+|||||+.+++..++++|||+|. +...+.||+++.+++++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~ 71 (578)
T PLN02549 1 MCGILAVLGCSDD---------SQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIV 71 (578)
T ss_pred CCcEEEEEeCCCC---------cchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEE
Confidence 9999998632111 01124567899999999999999999988899999993 33568999999888999
Q ss_pred EEEEEEEechhhhHHHhC-C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 78 lv~nG~I~N~~eL~~~l~-~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
+++||+|||+.+|+++|. + +.+|+|++ +++|++|| .++++.|+|+|||++||..+++++++||++|+
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~Gi 142 (578)
T PLN02549 72 VTANGEIYNHKELREKLKLHKFRTGSDCEVI--AHLYEEHG-------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGI 142 (578)
T ss_pred EEEEEEEEcHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEECCCCC
Confidence 999999999999999985 3 66777764 89999999 89999999999999999988999999999999
Q ss_pred ccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 154 ~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
|||||+...++.++||||+++|...+. .++.||||||
T Consensus 143 kPLyyg~~~~g~~~fASE~KaL~~~~~-~I~~lpPGh~ 179 (578)
T PLN02549 143 TPLYIGWGLDGSVWFASEMKALCDDCE-RFEEFPPGHY 179 (578)
T ss_pred CCeEEEEecCCeEEEEecHHHHHHHhC-CEEEeCCCeE
Confidence 999999865578999999999999875 5999999996
No 3
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=6.5e-41 Score=303.44 Aligned_cols=172 Identities=22% Similarity=0.414 Sum_probs=148.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeC---CCCCCCCCeEeeCCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~ 77 (191)
||||+|..-.... .......+.+|+++|+|||||+.+++..++++|||+|. +...+.||+.+.++.++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~ 71 (554)
T PRK09431 1 MCGIFGILDIKTD---------ADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHV 71 (554)
T ss_pred CceEEEEEcCCCc---------chhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEE
Confidence 9999998632111 01124677899999999999999999989999999993 33468999998889999
Q ss_pred EEEEEEEechhhhHHHhC--C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCC
Q 029579 78 CLFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (191)
Q Consensus 78 lv~nG~I~N~~eL~~~l~--~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (191)
+++||||||+.+|+++|. + +.+|+|+ ++++|++|| .+++++|+|+|||++||..++++++|||++|
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Ev--il~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~G 142 (554)
T PRK09431 72 LAVNGEIYNHQELRAELGDKYAFQTGSDCEV--ILALYQEKG-------PDFLDDLDGMFAFALYDSEKDAYLIARDPIG 142 (554)
T ss_pred EEEEEEEecHHHHHHHHhccCCcCCCCHHHH--HHHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999884 2 5667776 489999999 8999999999999999998999999999999
Q ss_pred CccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 153 ~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+|||||+...++.++||||+++|+..|. .++.||||||
T Consensus 143 ikPLyy~~~~~~~~~faSE~kaL~~~~~-~I~~lpPGh~ 180 (554)
T PRK09431 143 IIPLYYGYDEHGNLYFASEMKALVPVCK-TIKEFPPGHY 180 (554)
T ss_pred CcceEEEEeCCCeEEEecchHHHHHhcC-CEEEECCCeE
Confidence 9999999874478999999999999875 5999999996
No 4
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=8.4e-41 Score=304.10 Aligned_cols=172 Identities=24% Similarity=0.391 Sum_probs=146.3
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC-----CcEEEEEEeC---CCCCCCCCeEee
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG-----DNVTLAYTHQ---NESPLRQRSFAV 72 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~-----~~~~lg~~r~---~~~~~~QP~~~~ 72 (191)
||||+|..-.... ..........|+++|+|||||+.+++.. +.++|||+|+ +...+.||+.+.
T Consensus 1 MCGI~gi~~~~~~---------~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~ 71 (586)
T PTZ00077 1 MCGILAIFNSKGE---------RHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDD 71 (586)
T ss_pred CceEEEEEecCCc---------hhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCC
Confidence 9999998632111 0112356778999999999999999874 5789999993 334689999998
Q ss_pred CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCCCChH-HHhhccccceeEEEEECCCCEEE
Q 029579 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN-HVVGHLSGYFAFIVYDKSTSTLF 145 (191)
Q Consensus 73 ~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~~~~~-~~~~~L~G~fa~vi~d~~~~~l~ 145 (191)
+++++++|||||||+.+|+++| |+ +.+|+|+ ++++|++|| . ++++.|+|+|||++||..+++++
T Consensus 72 d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Ev--il~ly~~~G-------~~~~l~~L~G~FAf~i~D~~~~~l~ 142 (586)
T PTZ00077 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEI--IGHLYKEYG-------PKDFWNHLDGMFATVIYDMKTNTFF 142 (586)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHH--HHHHHHHhC-------HHHHHHhcCCCEEEEEEECCCCEEE
Confidence 8899999999999999999998 34 5667776 489999998 7 89999999999999999999999
Q ss_pred EEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 146 ~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++||++|+|||||+...++.++||||+++|...+. .++.||||||
T Consensus 143 ~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~-~I~~lpPGh~ 187 (586)
T PTZ00077 143 AARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCV-EVKQFPPGHY 187 (586)
T ss_pred EEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcC-CEEEeCCCcE
Confidence 99999999999999854578999999999998875 5999999997
No 5
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=297.83 Aligned_cols=170 Identities=25% Similarity=0.399 Sum_probs=149.0
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (191)
||||+|....+.. . .......+|++.|+|||||..++|...++++||+| .+...++||+...+++++
T Consensus 1 MCGI~g~~~~~~~--~--------~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~ 70 (542)
T COG0367 1 MCGIAGILNFKNL--I--------DAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYA 70 (542)
T ss_pred CCceeeeeccccc--c--------cchHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEE
Confidence 9999999754411 0 01667889999999999999999999999999999 333457999988667799
Q ss_pred EEEEEEEechhhhHHHhC---C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCC
Q 029579 78 CLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (191)
Q Consensus 78 lv~nG~I~N~~eL~~~l~---~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (191)
++|||||||+.+|+++|. + +.+|||++ +++|++|| .++++.|+|+|||++||..+++|+++||++
T Consensus 71 l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvi--l~~y~~~g-------~~~~~~l~G~fAfai~d~~~~~l~laRD~~ 141 (542)
T COG0367 71 IVYNGEIYNVEELRKELREAGYEFRTYSDTEVI--LTLYEEWG-------EDCVEHLNGMFAFAIYDETRQKLFLARDPF 141 (542)
T ss_pred EEECCEeeeHHHHHHHHHhcCceeccccchHHH--HHHHHHHH-------HHHHHHhccceEEEEEECCCCEEEEEecCC
Confidence 999999999999999984 4 67777775 89999999 899999999999999999999999999999
Q ss_pred CCccEEEEEeCCCeEEEEechhhHhhh-----ccCcceecCCCCC
Q 029579 152 GKVPLYWGITADGHVAFADDADLLKGA-----CGKSLASFPQGGF 191 (191)
Q Consensus 152 G~~pL~y~~~~~~~~~faSe~~aL~~~-----~~~~~~~~ppG~~ 191 (191)
|+|||||+.. ++.++||||.|+|+.+ +. .++++||||+
T Consensus 142 GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~-~i~~l~pg~~ 184 (542)
T COG0367 142 GVKPLYYTSK-NENLAFASEIKALLAHPVVRFLR-DIKELPPGHL 184 (542)
T ss_pred CccccEEEec-CCceEEEechhhhhhCCcccccC-CeEEcCCCcE
Confidence 9999999998 4679999999999998 64 5999999995
No 6
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=3.9e-38 Score=287.52 Aligned_cols=158 Identities=22% Similarity=0.386 Sum_probs=136.0
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCC---C-CCCCCCeEeeCCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN---E-SPLRQRSFAVKDEI 76 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~---~-~~~~QP~~~~~~~~ 76 (191)
||||+|..-.... ......+..|+++|+|||||+.++|..++++|||+|.. . ..+.||+.++++++
T Consensus 1 McGI~G~~~~~~~----------~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~ 70 (589)
T TIGR03104 1 MCGICGEIRFDGQ----------APDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGL 70 (589)
T ss_pred CcEEEEEEecCCC----------cchHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCE
Confidence 9999998632111 01245678999999999999999999999999999932 2 35799999888899
Q ss_pred EEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcC
Q 029579 77 FCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (191)
Q Consensus 77 ~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~ 150 (191)
+++|||+|||+.+|+++| |+ +.+|+|+ ++++|++|| .+++++|+|+|||++||..+++++++||+
T Consensus 71 ~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Ev--il~~y~~~G-------~~~~~~l~G~fa~~i~d~~~~~l~laRD~ 141 (589)
T TIGR03104 71 ALVFNGCIYNYRELRAELEALGYRFFSDGDTEV--ILKAYHAWG-------RDCVSRFNGMFAFAIWERDSGRLLLARDR 141 (589)
T ss_pred EEEECCEecCHHHHHHHHHhcCCcccCCCHHHH--HHHHHHHHH-------HHHHHHhhcceEEEEEeCCCCEEEEEecC
Confidence 999999999999999998 44 5666666 489999999 99999999999999999999999999999
Q ss_pred CCCccEEEEEeCCCeEEEEechhhHhhh
Q 029579 151 FGKVPLYWGITADGHVAFADDADLLKGA 178 (191)
Q Consensus 151 ~G~~pL~y~~~~~~~~~faSe~~aL~~~ 178 (191)
+|+|||||+.. ++.++||||+++|++.
T Consensus 142 ~G~kPLyy~~~-~~~~~faSe~kaLl~~ 168 (589)
T TIGR03104 142 LGIKPLYYAED-AGRLRFASSLPALLAA 168 (589)
T ss_pred CCCCCeEEEEe-CCEEEEEeCHHHHHhC
Confidence 99999999987 5789999999999753
No 7
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=3.8e-37 Score=249.76 Aligned_cols=170 Identities=25% Similarity=0.439 Sum_probs=144.6
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCCC---CCCCCCeEeeCCcEEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNE---SPLRQRSFAVKDEIFC 78 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~~---~~~~QP~~~~~~~~~l 78 (191)
|||+|..-.+.. ......+..|+.+|+|||||+.+++..++++|||+|... ..+.||+...++++++
T Consensus 1 cGI~g~~~~~~~----------~~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~ 70 (220)
T cd00712 1 CGIAGIIGLDGA----------SVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVL 70 (220)
T ss_pred CeEEEEEeCCCC----------cchHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEE
Confidence 899988632211 113567889999999999999999999999999999332 2589999988889999
Q ss_pred EEEEEEechhhhHHHhC---C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCC
Q 029579 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (191)
Q Consensus 79 v~nG~I~N~~eL~~~l~---~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (191)
++||+|||+.+|+++|+ . +.+|+|+ ++++|++|| .++++.|+|+||+++||..+++++++||++|
T Consensus 71 ~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~--l~~~~~~~g-------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G 141 (220)
T cd00712 71 VFNGEIYNYRELRAELEALGHRFRTHSDTEV--ILHLYEEWG-------EDCLERLNGMFAFALWDKRKRRLFLARDRFG 141 (220)
T ss_pred EEEEEEeCHHHHHHHHHhcCCcCCCCChHHH--HHHHHHHHh-------HHHHHHhhheEEEEEEECCCCEEEEEECCCC
Confidence 99999999999999883 2 4555555 589999998 8999999999999999998899999999999
Q ss_pred CccEEEEEeCCCeEEEEechhhHhhhcc--------------------------CcceecCCCCC
Q 029579 153 KVPLYWGITADGHVAFADDADLLKGACG--------------------------KSLASFPQGGF 191 (191)
Q Consensus 153 ~~pL~y~~~~~~~~~faSe~~aL~~~~~--------------------------~~~~~~ppG~~ 191 (191)
.|||||+.. ++.++||||.++|+..+. +.++.+|||||
T Consensus 142 ~~pLy~~~~-~~~~~~aSe~~~l~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~~V~~l~pG~~ 205 (220)
T cd00712 142 IKPLYYGRD-GGGLAFASELKALLALPGVPRELDEAALAEYLAFQYVPAPRTIFKGIRKLPPGHY 205 (220)
T ss_pred CEeeEEEEE-CCEEEEEcchHHHHhcCCCCCCcCHHHHHHHHhcCCCCCCCchhcCceEECCceE
Confidence 999999998 578999999999987643 36899999986
No 8
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=4.4e-37 Score=282.63 Aligned_cols=173 Identities=24% Similarity=0.387 Sum_probs=145.5
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeC---CCCCCCCCeEeeCCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~ 77 (191)
||||+|..-.+.. .+.....+..|+++|.|||||..++|..++++|||+|. +...+.||+.+.+++++
T Consensus 1 McGI~G~~~~~~~---------~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~ 71 (628)
T TIGR03108 1 MCGITGIFDLTGQ---------RPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVV 71 (628)
T ss_pred CCEEEEEEECCCC---------ccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEE
Confidence 9999998632211 01123567899999999999999999999999999993 33457999999888999
Q ss_pred EEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCC
Q 029579 78 CLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (191)
Q Consensus 78 lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (191)
++|||+|||+.||+++| |+ +.+|+|+ ++++|++|| .++++.|+|+|||++||..+++++++||++
T Consensus 72 lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Ev--i~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~ 142 (628)
T TIGR03108 72 VVFNGEIYNFQELVAELQALGHVFRTRSDTEV--IVHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARDRL 142 (628)
T ss_pred EEECCeECCHHHHHHHHHhcCCccCCCChHHH--HHHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEECCC
Confidence 99999999999999987 44 5667766 489999999 899999999999999999999999999999
Q ss_pred CCccEEEEEeCCCeEEEEechhhHhhhc--------------------------cCcceecCCCCC
Q 029579 152 GKVPLYWGITADGHVAFADDADLLKGAC--------------------------GKSLASFPQGGF 191 (191)
Q Consensus 152 G~~pL~y~~~~~~~~~faSe~~aL~~~~--------------------------~~~~~~~ppG~~ 191 (191)
|++||||+...++.++||||+++|++.. .+.|+.+||||+
T Consensus 143 G~~PLyy~~~~~~~~~faSe~~al~~~~~~~~~~d~~~l~~~l~~~~~~~~~T~~~gI~~l~pG~~ 208 (628)
T TIGR03108 143 GIKPLYYALLADGWFIFGSELKALTAHPSLPRELDPLAVEDYFAYGYVPDPRTIFKGVKKLEPGHT 208 (628)
T ss_pred CCcceEEEEeCCCEEEEEecHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCCCchhcCcEEECCCeE
Confidence 9999999975456799999999987642 146888999985
No 9
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=5.8e-37 Score=242.23 Aligned_cols=170 Identities=19% Similarity=0.259 Sum_probs=134.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC----CcEEEEEEeC---CCCCCCCCeEeeC
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----DNVTLAYTHQ---NESPLRQRSFAVK 73 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~----~~~~lg~~r~---~~~~~~QP~~~~~ 73 (191)
||||++..-.+.. .......+.+|++.|+|||||+.+++.. ..+.++|+|. +...+.||+.+.+
T Consensus 1 MCGI~~~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~ 71 (181)
T cd03766 1 MCGILCSVSPSGP---------HINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS 71 (181)
T ss_pred CCcEEEEEeCCCC---------cccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC
Confidence 9999998632111 0012356789999999999999988764 4589999993 2246799999877
Q ss_pred CcEEEEEEEEEechhhhHHHhCCCCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~l~~~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
++++++|||+|||+.+|++ +.+|+|++ +++|++|+.. .+++.++++.|+|+|||++||..+++++++||++|+
T Consensus 72 ~~~~lv~NGeIyN~~~l~~----s~sDtEvi--~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~ 144 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED----EENDTEVI--FELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGR 144 (181)
T ss_pred CCEEEEECCEEECcccccC----CCCHHHHH--HHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCC
Confidence 7899999999999999975 56777764 7999988731 123468999999999999999988999999999999
Q ss_pred ccEEEEEeC-CCeEEEEechhhHhhhccCcceecCCC
Q 029579 154 VPLYWGITA-DGHVAFADDADLLKGACGKSLASFPQG 189 (191)
Q Consensus 154 ~pL~y~~~~-~~~~~faSe~~aL~~~~~~~~~~~ppG 189 (191)
|||||+... ++.|+|||+....- ...+.++||+
T Consensus 145 rPL~y~~~~~~~~l~~aS~~~~~~---~~~~~e~~~~ 178 (181)
T cd03766 145 RSLLYKLDPNGFELSISSVSGSSS---GSGFQEVLAG 178 (181)
T ss_pred cCcEEEeeCCCCcEEEEEccCCCC---CCceEECCCC
Confidence 999999874 56899999975331 2258999995
No 10
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=9.4e-36 Score=265.37 Aligned_cols=143 Identities=25% Similarity=0.414 Sum_probs=127.5
Q ss_pred hhhHHHHHHHhHccCCCCCceE-eCCcEEEEEEeC---CCCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---
Q 029579 27 KTTSTALVDRFLQTNSSAVSVQ-VGDNVTLAYTHQ---NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (191)
Q Consensus 27 ~~~~~~m~~~l~~Rgpd~~~~~-~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~--- 96 (191)
+..+..|+++|+|||||+.++| ..++++|||+|. +...+.||+.+.+++++++|||+|||+.+|+++| |+
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 4578899999999999999999 888999999993 3334589999888899999999999999999988 33
Q ss_pred CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHh
Q 029579 97 AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLK 176 (191)
Q Consensus 97 ~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~ 176 (191)
+.+|+|+ ++++|++|| .++++.|+|+|||++||..+++++++||++|+|||||+.. ++.++||||+++|+
T Consensus 95 ~~~D~e~--il~~y~~~g-------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~ 164 (467)
T TIGR01536 95 TDSDTEV--ILHLYEEWG-------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALL 164 (467)
T ss_pred CCCHHHH--HHHHHHHHH-------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHH
Confidence 5666666 489999999 9999999999999999999999999999999999999997 57899999999997
Q ss_pred hhc
Q 029579 177 GAC 179 (191)
Q Consensus 177 ~~~ 179 (191)
+.+
T Consensus 165 ~~~ 167 (467)
T TIGR01536 165 AHP 167 (467)
T ss_pred hcc
Confidence 654
No 11
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.9e-35 Score=258.05 Aligned_cols=174 Identities=16% Similarity=0.186 Sum_probs=140.2
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-... ....+..|+.+|.|||+|+.++.. .+++
T Consensus 1 MCGI~G~~~~~~-------------~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~ 67 (445)
T PRK08525 1 MCAVVGVINSKN-------------AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEI 67 (445)
T ss_pred CceEEEEEcCcc-------------HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcE
Confidence 999999863221 245566899999999999999754 1358
Q ss_pred EEEEEeCCC-----CCCCCCeEe--eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 54 TLAYTHQNE-----SPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
+|||+|..+ ..+.||+.+ .+++++++|||+|||+.+|+++| |+ +.+|+|++ +++|..++.... +
T Consensus 68 ~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi--~~l~~~~~~~~~~e 145 (445)
T PRK08525 68 AIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENL--IHLIARSKKESLKD 145 (445)
T ss_pred EEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 999999332 257999987 46789999999999999999998 44 56777764 788887652111 3
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+|||+++++ ++|+++||++|+|||||+...++.++||||.+||.....+.+++++||++
T Consensus 146 a~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~ 215 (445)
T PRK08525 146 RIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEM 215 (445)
T ss_pred HHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeE
Confidence 45789999999999999995 78999999999999999985446799999999997776677999999974
No 12
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-34 Score=256.05 Aligned_cols=173 Identities=17% Similarity=0.157 Sum_probs=140.4
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-... .....-.++.+|.|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~ 77 (475)
T PRK07631 11 ECGVFGIWGHEE-------------AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKA 77 (475)
T ss_pred CCcEEEEECCch-------------hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCE
Confidence 999999874211 134556789999999999998652 2468
Q ss_pred EEEEEeCCC-----CCCCCCeE--eeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 54 TLAYTHQNE-----SPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~--~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
+|||+|..+ ..+.||+. +.+++++++|||+|+|+++|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 78 gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~Li~~~~~~~~~e 155 (475)
T PRK07631 78 AIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVL--AHLIKRSGAPTLKE 155 (475)
T ss_pred EEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 999999432 35799996 345789999999999999999998 44 56677764 789988763221 3
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.+||...+.+.+++|+||++
T Consensus 156 ai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGei 224 (475)
T PRK07631 156 QIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGEL 224 (475)
T ss_pred HHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeE
Confidence 56789999999999999995 68999999999999999997 56799999999998887778999999984
No 13
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=8.2e-34 Score=225.23 Aligned_cols=190 Identities=53% Similarity=0.945 Sum_probs=176.0
Q ss_pred eeeecccccCCchhhhccCCCCC-C-chhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCCCCCCCCCeEeeCCcEEEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTP-S-PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~~~~~lv 79 (191)
++||...++++|+|+++|.+..+ . +++...++++.+....|++..+.+++...|+++..++...+|..+..-+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 58999999999999999986543 3 788999999999999999999999999999999876666666666666789999
Q ss_pred EEEEEechhhhHHHhCCCCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEE
Q 029579 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (191)
Q Consensus 80 ~nG~I~N~~eL~~~l~~~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~ 159 (191)
|-|.|.|...|++++|++++.+|+.+++++|+...|+|+.+..++++.|+|.||||+||..++++++|||.-|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 160 ITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 160 ~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
.+.||.++||++...|...|++...+||+||+
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~ 192 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCF 192 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceE
Confidence 99889999999999999999999999999985
No 14
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=100.00 E-value=2.6e-33 Score=226.90 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=138.3
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC---------------------------CcEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~---------------------------~~~~ 54 (191)
|||+|...... ....+..|+.+|+|||||+.+++.. +.++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (215)
T cd00714 1 CGIVGYIGKRE-------------AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVG 67 (215)
T ss_pred CEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEE
Confidence 99999874211 1356678999999999999998753 4589
Q ss_pred EEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---CC
Q 029579 55 LAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (191)
Q Consensus 55 lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~~ 120 (191)
|||+|..+ ..+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.+++..+. ++
T Consensus 68 igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi--~~l~~~~~~~~~~~~~a 145 (215)
T cd00714 68 IGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI--AHLIEYYYDGGLDLLEA 145 (215)
T ss_pred EEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 99999332 34789998777789999999999999999998 44 57777764 788888874332 35
Q ss_pred hHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 121 ~~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+.++++.|+|+|||++||... ++|+++|| .|||||+.. ++.++||||.++|...+.+ +..+.+|.+
T Consensus 146 i~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~~~~~~ 212 (215)
T cd00714 146 VKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYLEDGDI 212 (215)
T ss_pred HHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCCE
Confidence 568999999999999999876 49999999 499999997 5689999999999999865 888888864
No 15
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.3e-33 Score=249.71 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=140.3
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe----------------------------CCc
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~----------------------------~~~ 52 (191)
||||||...... .....-.++.+|.|||+|+.++.. .++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~ 77 (484)
T PRK07272 11 ECGVFGIWGHPD-------------AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQ 77 (484)
T ss_pred cCeEEEEECCcc-------------HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCc
Confidence 999999864221 245566899999999999998644 135
Q ss_pred EEEEEEeCCC-----CCCCCCeEe--eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-
Q 029579 53 VTLAYTHQNE-----SPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (191)
Q Consensus 53 ~~lg~~r~~~-----~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~- 118 (191)
++|||+|..+ ..+.||+.. .+++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI--~~Li~~~~~~~~~ 155 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEIL--MHLIRRSHNPTFM 155 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHcCCCHH
Confidence 8999999432 257999986 35789999999999999999998 44 66777765 788877642111
Q ss_pred CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 119 ~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+++.++++.|+|+|||++++. ++|+++|||+|+|||||+..+++.++||||.+||.....+.+++++||++
T Consensus 156 eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEi 226 (484)
T PRK07272 156 GKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEI 226 (484)
T ss_pred HHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeE
Confidence 356889999999999999985 78999999999999999986445799999999998877778999999974
No 16
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.5e-33 Score=247.45 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=139.8
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-... .....-.++.+|.|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~ 77 (471)
T PRK06781 11 ECGVFGIWGHEN-------------AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKS 77 (471)
T ss_pred cCeEEEEEcCcc-------------HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCE
Confidence 999999864221 134556799999999999998652 2457
Q ss_pred EEEEEeCCC-----CCCCCCeEe--eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 54 TLAYTHQNE-----SPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
+|||+|..+ ..+.||+.. .+++++++|||+|+|+++|+++| |+ +.+|||++ ++++.+++.... +
T Consensus 78 ~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI--~~Li~~~~~~~~~e 155 (471)
T PRK06781 78 AIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVL--LHLIKRSTKDSLIE 155 (471)
T ss_pred EEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 999999432 356899964 35789999999999999999998 43 56777764 788887653222 4
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.+||.....+.+++++||++
T Consensus 156 ai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGei 224 (471)
T PRK06781 156 SVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGEL 224 (471)
T ss_pred HHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEE
Confidence 66889999999999999994 78999999999999999997 56799999999998877778999999984
No 17
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-34 Score=246.40 Aligned_cols=172 Identities=25% Similarity=0.408 Sum_probs=149.8
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEe---CCCCCCCCCeEeeCCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (191)
||||+...-...++. ......++.+.++|||||.++..+.....++|.| .+...+.||++..++.++
T Consensus 1 MCGI~Av~~~~~~~~----------~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~ 70 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEA----------KKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYV 70 (543)
T ss_pred CCceeeeecccchhh----------cChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEE
Confidence 999998865333321 3445557888999999999998877777999999 445678999999989999
Q ss_pred EEEEEEEechhhhHHHhC-C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 78 lv~nG~I~N~~eL~~~l~-~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
+..||||||+.+|++.+. + +.+|+|++ +++|.+.|. +++...|+|.|||+++|...++++++||++|+
T Consensus 71 ~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvI--i~lY~khg~------~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv 142 (543)
T KOG0571|consen 71 VTVNGEIYNHKKLREHCKDFEFQTGSDCEVI--IHLYEKHGG------EQAICMLDGVFAFVLLDTKDDKVVAARDPIGV 142 (543)
T ss_pred EEECceeccHHHHHHHhhhcccccCCCceee--eehHhhcCc------hhHHHHhhhheEEEEecCCCCeEEeccCCcCc
Confidence 999999999999999884 3 78999996 799998852 89999999999999999999999999999999
Q ss_pred ccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 154 ~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+||||+++.++.++||||.+.|...|.+ ++.||||||
T Consensus 143 ~~lY~g~~~~gs~~~aSe~k~l~d~C~~-i~~fpPgh~ 179 (543)
T KOG0571|consen 143 TPLYYGWDSDGSVYFASEMKCLEDDCEK-IESFPPGHY 179 (543)
T ss_pred eeeEEEecCCCcEEEeeehhhhhhhhhc-eeecCCcce
Confidence 9999999878899999999999999976 999999997
No 18
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.2e-33 Score=247.64 Aligned_cols=173 Identities=14% Similarity=0.112 Sum_probs=138.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe--------------------------CCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~--------------------------~~~~~ 54 (191)
||||||..-... ....+-.++.+|.|||+|+.++.. .++++
T Consensus 19 mCGI~G~~~~~~-------------~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~g 85 (474)
T PRK06388 19 DCAVVGFKGGIN-------------AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVG 85 (474)
T ss_pred CCeEEEEECCcc-------------hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEE
Confidence 999999863221 245677899999999999999654 23579
Q ss_pred EEEEeCC-----CCCCCCCeEe--eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhh-ccCC-C
Q 029579 55 LAYTHQN-----ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALR-DRAP-Y 119 (191)
Q Consensus 55 lg~~r~~-----~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g-~~~~-~ 119 (191)
|||+|.. ...+.||+.. .++.++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+.- ..+. +
T Consensus 86 IGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi--~~li~~~~~~~~~~e 163 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVM--LAELSRNISKYGLKE 163 (474)
T ss_pred EeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHHHhcCCHHH
Confidence 9999932 2357999873 35789999999999999999998 44 67777775 67774321 1121 3
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++++||++
T Consensus 164 ai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGei 232 (474)
T PRK06388 164 GFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEV 232 (474)
T ss_pred HHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEE
Confidence 56789999999999999974 78999999999999999997 56799999999999987778999999974
No 19
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.1e-33 Score=246.36 Aligned_cols=173 Identities=18% Similarity=0.195 Sum_probs=138.8
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe----------------------------CCc
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~----------------------------~~~ 52 (191)
||||||..-... ....+..++.+|.|||+|+.++.. .++
T Consensus 21 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~ 87 (479)
T PRK09123 21 ECGVFGILGHPD-------------AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGN 87 (479)
T ss_pred cCeEEEEEcCcc-------------hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCC
Confidence 999999874211 244566799999999999998653 134
Q ss_pred EEEEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-
Q 029579 53 VTLAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (191)
Q Consensus 53 ~~lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~- 118 (191)
++|||+|..+ ..+.||+... +++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi--~~Li~~~~~~~~~ 165 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVI--LHLIARSRKASFL 165 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHccCCHH
Confidence 7999999332 3678999864 5789999999999999999998 43 56777765 678876542111
Q ss_pred CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 119 ~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+++.++++.|+|+||+++|+. ++|+++||++|+|||||+.. ++.++||||.+||.......+++++||++
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGei 235 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGEL 235 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeE
Confidence 345789999999999999995 69999999999999999997 56899999999998765667999999984
No 20
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.8e-32 Score=244.58 Aligned_cols=175 Identities=16% Similarity=0.157 Sum_probs=138.1
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-... ......-.++.+|.|||+|+.++.. .+++
T Consensus 33 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i 100 (500)
T PRK07349 33 ACGVFGVYAPGE------------EVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDL 100 (500)
T ss_pred CCeEEEEECCCc------------CHHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCE
Confidence 999999874211 1245556899999999999998633 2357
Q ss_pred EEEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC--
Q 029579 54 TLAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-- 118 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-- 118 (191)
+|||+|..+ ..+.||+... .++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.++...+.
T Consensus 101 ~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~li~~~~~~~~~~ 178 (500)
T PRK07349 101 AVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMI--AFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHHhcCCCH
Confidence 999999432 3579999864 4789999999999999999998 43 67777765 677765322221
Q ss_pred -CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeC---CCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 119 -~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~---~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+++.++++.|+|+|||++++. ++|+++||++|+|||||+... ++.++||||.+||.....+.+++|+||++
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGei 253 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGEL 253 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeE
Confidence 356789999999999999874 789999999999999999852 24799999999998876677999999974
No 21
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=2.8e-32 Score=243.29 Aligned_cols=174 Identities=17% Similarity=0.158 Sum_probs=139.0
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-.+. ....+-.|+.+|.|||+|+.++.. .+++
T Consensus 1 MCGI~Gi~~~~~-------------~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (479)
T PLN02440 1 ECGVVGIFGDPE-------------ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDI 67 (479)
T ss_pred CceEEEEECCcc-------------HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcE
Confidence 999999873211 135677899999999999998754 4568
Q ss_pred EEEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 54 TLAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
+|||+|..+ ..+.||+... +++++++|||+|+|+++|+++| |. +.+|+|++ +++|.++..... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi--~~li~~~~~~~~~~ 145 (479)
T PLN02440 68 AIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVL--LHLIAISKARPFFS 145 (479)
T ss_pred EEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhhhhHHH
Confidence 999999332 3679999863 4679999999999999999988 33 56677765 677766531111 2
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+||+++||. ++|+++||++|+|||||+..+++.++||||.+||.....+.+++++||++
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGei 215 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEV 215 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeE
Confidence 34889999999999999995 57999999999999999976456799999999999876678999999984
No 22
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.3e-32 Score=246.64 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=138.7
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||....+. ....+..|+.+|.|||||+.+++. .+++
T Consensus 1 MCGI~Gi~~~~~-------------~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (501)
T PRK09246 1 MCGIVGIVGHSP-------------VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNM 67 (501)
T ss_pred CceEEEEEcCcC-------------HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCE
Confidence 999999874211 134566899999999999999765 4578
Q ss_pred EEEEEeCCC-----CCCCCCeEe-eCCcEEEEEEEEEechhhhHHHh----CC---CCCCchHHHHHHHHHHhhcc--C-
Q 029579 54 TLAYTHQNE-----SPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR--A- 117 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l----~~---~~~d~e~~~~~~~~~~~g~~--~- 117 (191)
+|||+|..+ ..+.||+.. ..++++++|||+|+|+++|+++| +. +.+|+|++ ++++.++... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi--~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVL--LNVFAHELQKFRGL 145 (501)
T ss_pred EEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHH--HHHHHHHHHhcccc
Confidence 999999432 357999974 34569999999999999999987 22 67777775 6777765321 1
Q ss_pred -------CCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeC---CCeEEEEechhhHhhhccCcceecC
Q 029579 118 -------PYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFP 187 (191)
Q Consensus 118 -------~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~---~~~~~faSe~~aL~~~~~~~~~~~p 187 (191)
.+++.++++.|+|+||++++.. .++|+++||++|+|||||+..+ ++.++||||.+||.....+.+++++
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~ 224 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVA 224 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeC
Confidence 1345689999999999998853 4679999999999999999862 3479999999999987777899999
Q ss_pred CCCC
Q 029579 188 QGGF 191 (191)
Q Consensus 188 pG~~ 191 (191)
||+.
T Consensus 225 PGei 228 (501)
T PRK09246 225 PGEA 228 (501)
T ss_pred CCeE
Confidence 9973
No 23
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2e-32 Score=244.77 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=138.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-+..+ .....-.++.+|.|||+|+.++.. .+++
T Consensus 23 mCGI~Gi~~~~~~------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i 90 (510)
T PRK07847 23 ECGVFGVWAPGEE------------VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHV 90 (510)
T ss_pred cCeEEEEECCCcC------------HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcE
Confidence 9999998642211 244556799999999999998643 2357
Q ss_pred EEEEEeCCC-----CCCCCCeEee---CCcEEEEEEEEEechhhhHHHh---C-------C-CCCCchHHHHHHHHHHhh
Q 029579 54 TLAYTHQNE-----SPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---G-------L-AKSANEVILVIEAYKALR 114 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~---~~~~~lv~nG~I~N~~eL~~~l---~-------~-~~~d~e~~~~~~~~~~~g 114 (191)
+|||+|..+ ..+.||+... .++++++|||+|+|+.+|+++| | . +.+|+|++ ++++..++
T Consensus 91 ~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI--~~Li~~~~ 168 (510)
T PRK07847 91 AIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLV--TALLAHGA 168 (510)
T ss_pred EEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHH--HHHHHHhc
Confidence 999999432 2579999753 5789999999999999999988 4 2 56666664 78887765
Q ss_pred ccCC--CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 115 DRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 115 ~~~~--~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
..+. +++.++++.|+|+|||+++|. ++|+++||++|+|||||+.. ++.++||||.+||.....+.|+++|||++
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGei 244 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGEL 244 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEE
Confidence 3221 355789999999999999995 78999999999999999997 56799999999998875567999999984
No 24
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9e-32 Score=237.48 Aligned_cols=169 Identities=18% Similarity=0.228 Sum_probs=135.6
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe--------------------------CCcEE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~--------------------------~~~~~ 54 (191)
||||||..-++ ....+-.++.+|.|||+|+.++.. .++++
T Consensus 4 ~CGI~G~~~~~--------------~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~ 69 (442)
T PRK08341 4 KCGIFAAYSEN--------------APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLA 69 (442)
T ss_pred ccEEEEEECCC--------------cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEE
Confidence 89999986321 245677899999999999999733 35689
Q ss_pred EEEEeCC---CCCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHH----HHhhccCCC
Q 029579 55 LAYTHQN---ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY----KALRDRAPY 119 (191)
Q Consensus 55 lg~~r~~---~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~----~~~g~~~~~ 119 (191)
|||+|.. ...+.||+... ++.++++|||+|+|+.+|+++| |+ +.+|||++ ++++ .++++ -.+
T Consensus 70 IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI--~~li~~~~~~~~~-~~~ 146 (442)
T PRK08341 70 IGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI--GISFLWHYSETGD-EFE 146 (442)
T ss_pred EEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHH--HHHHHHHHHhcCC-HHH
Confidence 9999943 24679999765 4789999999999999999998 44 67888876 3433 23221 013
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. + .++||||.+||...+. .+++++||++
T Consensus 147 ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~-~~~~ASE~~Al~~~~~-~v~~l~PGei 213 (442)
T PRK08341 147 AMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-D-GHYFASEDSALRMFVN-EIRDVFPGEV 213 (442)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-C-EEEEEeCcHHHHhhCC-eEEEeCCCEE
Confidence 56789999999999999984 78999999999999999984 4 4899999999998874 6999999984
No 25
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=100.00 E-value=6.6e-32 Score=247.40 Aligned_cols=171 Identities=18% Similarity=0.225 Sum_probs=140.4
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-... ....+..|+.+|.|||||+.+++. .+++
T Consensus 1 MCGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~ 67 (604)
T PRK00331 1 MCGIVGYVGQRN-------------AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTT 67 (604)
T ss_pred CcEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcE
Confidence 999999863211 135667899999999999999865 3468
Q ss_pred EEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---C
Q 029579 54 TLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~ 119 (191)
+|||+|..+ ..+.||+.+.+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++...+. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi--~~l~~~~~~~g~~~~~ 145 (604)
T PRK00331 68 GIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVI--AHLIEEELKEGGDLLE 145 (604)
T ss_pred EEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHH--HHHHHHHHhhCCCHHH
Confidence 999999332 35799998777899999999999999999998 44 56777764 788887743332 4
Q ss_pred ChHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+.+ +.+|+||++
T Consensus 146 a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~ 213 (604)
T PRK00331 146 AVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRR-VIYLEDGEI 213 (604)
T ss_pred HHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCeE
Confidence 5688999999999999999886 899999996 99999997 5679999999999998754 899999974
No 26
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.3e-32 Score=239.72 Aligned_cols=175 Identities=15% Similarity=0.161 Sum_probs=140.9
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||||..-.+.. .....+-.++.+|+|||+|+.++.. .+++
T Consensus 14 mCGI~Gi~~~~~~-----------~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~ 82 (469)
T PRK05793 14 ECGVFGVFSKNNI-----------DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNS 82 (469)
T ss_pred CCeEEEEEcCCCc-----------cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcE
Confidence 9999998742210 0234555789999999999998742 2458
Q ss_pred EEEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 54 TLAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
+|||+|..+ ..+.||+... +++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++..+. +
T Consensus 83 ~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi--~~li~~~~~~~~~~ 160 (469)
T PRK05793 83 AIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVI--LNLIARSAKKGLEK 160 (469)
T ss_pred EEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHccCCHHH
Confidence 999999432 3579999864 5789999999999999999998 43 67777765 688877653222 4
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.....+.+++++||++
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGei 229 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEI 229 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeE
Confidence 56789999999999999985 78999999999999999997 56799999999999877778999999984
No 27
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=2.1e-31 Score=220.37 Aligned_cols=173 Identities=15% Similarity=0.155 Sum_probs=138.4
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~~ 54 (191)
|||+|...... ....+..|++.|+|||||+.++.. .+.++
T Consensus 1 Cgi~g~~~~~~-------------~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (252)
T cd00715 1 CGVFGIYGAED-------------AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIA 67 (252)
T ss_pred CEEEEEECCcc-------------hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEE
Confidence 99999875321 245567899999999999998753 13479
Q ss_pred EEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC--C
Q 029579 55 LAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP--Y 119 (191)
Q Consensus 55 lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~--~ 119 (191)
|||+|..+ ..+.||+... +++++++|||+|+|+++|+++| +. +.+|+|++ ++++.++++++. +
T Consensus 68 lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi--~~l~~~~~~~~~~~~ 145 (252)
T cd00715 68 IGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVI--LHLIARSLAKDDLFE 145 (252)
T ss_pred EEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHhhccCCHHH
Confidence 99999322 3579999863 4789999999999999999987 23 56666764 788888874311 3
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|.||+++||. ++|+++||++|.|||||+...++.++||||.++|.....+.|++|||||+
T Consensus 146 al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~ 215 (252)
T cd00715 146 AIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEI 215 (252)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeE
Confidence 45689999999999999997 89999999999999999997437899999999998864456999999985
No 28
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.97 E-value=1.3e-30 Score=215.40 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=134.6
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCC-CCCceEeC------------------------------
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNS-SAVSVQVG------------------------------ 50 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgp-d~~~~~~~------------------------------ 50 (191)
|||+|..-+..+ ......+..|+.+|+|||+ |+.++...
T Consensus 1 CGI~G~~~~~~~----------~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~ 70 (249)
T cd01907 1 CGIFGIMSKDGE----------PFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRY 70 (249)
T ss_pred CcEEEEEecCCc----------cccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhc
Confidence 999998743211 1135677799999999999 99997652
Q ss_pred ------CcEEEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHh
Q 029579 51 ------DNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKAL 113 (191)
Q Consensus 51 ------~~~~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~ 113 (191)
++++|||+|..+ ..+.||+.. ++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++...
T Consensus 71 ~~~~~~~~~~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi--~~ll~~~ 146 (249)
T cd01907 71 DLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVI--AYYLDLL 146 (249)
T ss_pred CchheEEEEEEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHH
Confidence 458999999432 247999976 489999999999999999987 43 67777775 5666532
Q ss_pred hcc-CC--C-------------------ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEec
Q 029579 114 RDR-AP--Y-------------------PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (191)
Q Consensus 114 g~~-~~--~-------------------~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe 171 (191)
... +. + ++..+++.|+|+|||++++. +.++++||++|.|||||+.. ++.++||||
T Consensus 147 ~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE 223 (249)
T cd01907 147 LRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASE 223 (249)
T ss_pred HHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEc
Confidence 111 11 0 22468899999999999985 67999999999999999998 568999999
Q ss_pred hhhHhhhc---cCcceecCCCCC
Q 029579 172 ADLLKGAC---GKSLASFPQGGF 191 (191)
Q Consensus 172 ~~aL~~~~---~~~~~~~ppG~~ 191 (191)
.++|...+ .+.+.+++||++
T Consensus 224 ~~al~~~~~~~~~~~~~l~pGe~ 246 (249)
T cd01907 224 ECAIREIPDRDNAKVWEPRPGEY 246 (249)
T ss_pred HHHHhccCccchheEecCCCCce
Confidence 99999874 456899999975
No 29
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.97 E-value=9.6e-31 Score=239.83 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=139.0
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~~ 54 (191)
|||+|..-... ....+..|+.+|.|||||+.+++. .++++
T Consensus 1 CGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (607)
T TIGR01135 1 CGIVGYIGQRD-------------AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVG 67 (607)
T ss_pred CeEEEEECCcc-------------HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEE
Confidence 99999873111 135677899999999999999765 34679
Q ss_pred EEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---CC
Q 029579 55 LAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (191)
Q Consensus 55 lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~~ 120 (191)
|||+|..+ ..+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++++.+. ++
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi--~~l~~~~~~~~~~~~~a 145 (607)
T TIGR01135 68 IGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVI--AHLIEEYLREGGDLLEA 145 (607)
T ss_pred EEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 99999322 35789998777889999999999999999998 44 56777764 789988875332 35
Q ss_pred hHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 121 ~~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+.++++.|+|+|||++||+.. ++++++||+ |||||+.. ++.++||||.++|...+.+ +.++|||++
T Consensus 146 i~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~ 212 (607)
T TIGR01135 146 VQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRR-VIYLEDGDI 212 (607)
T ss_pred HHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCE-EEEeCCCeE
Confidence 678999999999999999875 569999996 99999996 5689999999999998854 889999984
No 30
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.97 E-value=8.2e-30 Score=204.82 Aligned_cols=179 Identities=24% Similarity=0.346 Sum_probs=141.8
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCC---------------------------cEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGD---------------------------NVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~---------------------------~~~ 54 (191)
|||+|....++.... .......|+..+.+||||+.++.... .++
T Consensus 1 Cgi~g~~~~~~~~~~---------~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (220)
T cd00352 1 CGIFGIVGADGAASL---------LLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVA 71 (220)
T ss_pred CEEEEEECCCCcchh---------hHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEE
Confidence 899988744332100 00111579999999999999976532 689
Q ss_pred EEEEeCC-----CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHhC---C---CCCCchHHHHHHHHHHhhccCC--CCh
Q 029579 55 LAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAP--YPP 121 (191)
Q Consensus 55 lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l~---~---~~~d~e~~~~~~~~~~~g~~~~--~~~ 121 (191)
|+|+|.. ...+.||+....++++++|||+|+|+.+|++++. . ..+|+|+ ++.+|.+|+..+. +++
T Consensus 72 i~H~R~at~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~--i~~~~~~~~~~~~~~~~~ 149 (220)
T cd00352 72 LGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEV--ILHLLERLGREGGLFEAV 149 (220)
T ss_pred EEEeEeeecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHH--HHHHHHHHhccCCHHHHH
Confidence 9999932 2467999987666899999999999999998873 2 5666666 4788988874332 345
Q ss_pred HHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 122 NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 122 ~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
.++++.++|.|+|+++|..+++++++||++|.+||||+...++.++||||..++...+.+.|.++|||++
T Consensus 150 ~~~~~~~~G~~~~~~~d~~~~~l~~~rd~~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g~~ 219 (220)
T cd00352 150 EDALKRLDGPFAFALWDGKPDRLFAARDRFGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPGEL 219 (220)
T ss_pred HHHHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCCCC
Confidence 7899999999999999988899999999999999999997346899999999999877566999999985
No 31
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=8.4e-30 Score=225.61 Aligned_cols=173 Identities=17% Similarity=0.163 Sum_probs=137.3
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~~ 54 (191)
|||||..-... ........|+.+|.|||+|+.++.. .++++
T Consensus 1 CGI~Gi~~~~~------------~~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~ 68 (442)
T TIGR01134 1 CGVVGIYSQEE------------DAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVG 68 (442)
T ss_pred CEEEEEEcCCc------------cHHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEE
Confidence 99999863211 1245666899999999999998753 34689
Q ss_pred EEEEeCCC-----CCCCCCeEe-eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---C
Q 029579 55 LAYTHQNE-----SPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (191)
Q Consensus 55 lg~~r~~~-----~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~ 119 (191)
|||+|..+ ..+.||+.. ..++++++|||+|+|+++|+++| |. +.+|+|++ +++|.+++..+. +
T Consensus 69 IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi--~~li~~~~~~~~~~~~ 146 (442)
T TIGR01134 69 IGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL--LHLLARERLEEDDLFE 146 (442)
T ss_pred EEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhcccCCHHH
Confidence 99999332 357999984 33469999999999999999988 33 56677764 788887652111 3
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.+++++|+|.||++++| .++|+++||++|.|||||+.. ++.++||||.++|.....+.++++|||+.
T Consensus 147 ai~~~~~~l~G~falvi~~--~~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGei 215 (442)
T TIGR01134 147 AIARVLKRVRGAYALVIMI--GDGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEA 215 (442)
T ss_pred HHHHHHHHhCccceEEEEE--CCEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeE
Confidence 5678999999999999997 479999999999999999997 56899999999998765567999999974
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.97 E-value=2.9e-29 Score=231.36 Aligned_cols=171 Identities=16% Similarity=0.240 Sum_probs=135.5
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe--C----------------------------
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~--~---------------------------- 50 (191)
||||||..-... ....+-.++.+|.|||+|+.|+.. .
T Consensus 24 MCGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~ 90 (640)
T PTZ00295 24 CCGIVGYLGNED-------------ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLD 90 (640)
T ss_pred CCeEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhc
Confidence 999999863211 245667899999999999998654 1
Q ss_pred ----CcEEEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhc
Q 029579 51 ----DNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD 115 (191)
Q Consensus 51 ----~~~~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~ 115 (191)
++++|||+|..+ ..+.||+.+.+++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++...-.
T Consensus 91 ~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi--~~li~~~~~ 168 (640)
T PTZ00295 91 SHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVI--ANLIGLELD 168 (640)
T ss_pred CCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHH--HHHHHHHHh
Confidence 236999999332 35799998767899999999999999999988 44 67777775 566653322
Q ss_pred cCC---CChHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 116 RAP---YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 116 ~~~---~~~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
.+. +++.++++.|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.++|...+.+ +..++||++
T Consensus 169 ~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei 243 (640)
T PTZ00295 169 QGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEI 243 (640)
T ss_pred cCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeE
Confidence 221 3567899999999999999976 4899999997 99999997 5679999999999998876 557999974
No 33
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.96 E-value=3.1e-29 Score=200.31 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=93.2
Q ss_pred CcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEE
Q 029579 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (191)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~a 147 (191)
+++++++||||||+.+|+++| +. +.+|+|+ ++++|++|| .+++++|+|+|||+|||+. ++|+++
T Consensus 50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEv--ll~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAEL--LLLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHH--HHHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 579999999999999999998 32 4566666 589999999 8999999999999999998 999999
Q ss_pred EcCCCCccEEEEEeCCCeEEEEechhhHhhhc-----------------cCcceecCCCCC
Q 029579 148 SDQFGKVPLYWGITADGHVAFADDADLLKGAC-----------------GKSLASFPQGGF 191 (191)
Q Consensus 148 RD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~-----------------~~~~~~~ppG~~ 191 (191)
||++|+|||||... +.++||||+++|++.. .+.|+.+|||||
T Consensus 120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~~~~~~d~~~~~~~~T~~~gI~rL~PG~~ 178 (199)
T cd01909 120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEGPKAFPFKSAGADTVSGLTGVQRVPPGTV 178 (199)
T ss_pred ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCCCcccCcccCCCCCChhcCceEECCCcE
Confidence 99999999999886 5799999999997642 245888999986
No 34
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.96 E-value=7.4e-29 Score=184.85 Aligned_cols=106 Identities=30% Similarity=0.538 Sum_probs=70.4
Q ss_pred CCCCCCeE-eeCCcEEEEEEEEEechhhhHHHhC---C---CCCCchHHHHHHHHHH---hhccCCCChHHHhhccccce
Q 029579 63 SPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKA---LRDRAPYPPNHVVGHLSGYF 132 (191)
Q Consensus 63 ~~~~QP~~-~~~~~~~lv~nG~I~N~~eL~~~l~---~---~~~d~e~~~~~~~~~~---~g~~~~~~~~~~~~~L~G~f 132 (191)
..+.||+. +.++++++++||+|||+++|+++|. . +.+|+|+ ++++|++ |+ .++++.|+|.|
T Consensus 10 ~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~--i~~~~~~~~~~~-------~~~~~~l~G~f 80 (125)
T PF13537_consen 10 DEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSEL--ILHLYEEYREWG-------EDFLKRLDGPF 80 (125)
T ss_dssp ---------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHH--HHHHHHH---HG-------GGGGGT--EEE
T ss_pred cccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHH--HHHHHHHHHHHH-------HHHHHhCCceE
Confidence 46799999 5778899999999999999999983 2 4555555 5788886 77 99999999999
Q ss_pred eEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhh
Q 029579 133 AFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (191)
Q Consensus 133 a~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~ 177 (191)
||++||+.+++++++||++|+|||||+..+++.++||||+++|++
T Consensus 81 a~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 81 AFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 999999988899999999999999999984358999999999975
No 35
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=201.54 Aligned_cols=175 Identities=20% Similarity=0.204 Sum_probs=140.1
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe-CC---------------------------c
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GD---------------------------N 52 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~-~~---------------------------~ 52 (191)
||||||....+. . + ..+..-..+-+|.|||.++.++-. ++ +
T Consensus 4 ~CGV~Gi~~~~~-~---~-------a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~ 72 (470)
T COG0034 4 MCGVFGIWGHKD-N---N-------AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGN 72 (470)
T ss_pred cceEEEEecCCc-c---c-------hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCc
Confidence 999999875322 1 0 245666789999999999988632 22 4
Q ss_pred EEEEEEeCCC-----CCCCCCeEeeC--CcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhc-cCC
Q 029579 53 VTLAYTHQNE-----SPLRQRSFAVK--DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD-RAP 118 (191)
Q Consensus 53 ~~lg~~r~~~-----~~~~QP~~~~~--~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~-~~~ 118 (191)
++|||+|.++ ..+.||++.+. +.++++|||.|.|..+|+++| |. +.+|||++ ++++.+... .+.
T Consensus 73 ~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvl--l~l~a~~~~~~~~ 150 (470)
T COG0034 73 VGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVL--LHLLARELDEDDI 150 (470)
T ss_pred ceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHH--HHHHHhhcccccH
Confidence 5899999443 35689998653 469999999999999999998 43 67888885 677765432 111
Q ss_pred -CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCC
Q 029579 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGG 190 (191)
Q Consensus 119 -~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~ 190 (191)
+++.++++.+.|.||+++... +.|+++|||.|+|||.++...||.++||||.+||.....+.+++++||.
T Consensus 151 ~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE 221 (470)
T COG0034 151 FEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGE 221 (470)
T ss_pred HHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCce
Confidence 456889999999999999985 5999999999999999999755669999999999999889999999996
No 36
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.94 E-value=4.5e-26 Score=210.68 Aligned_cols=180 Identities=17% Similarity=0.187 Sum_probs=135.0
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC------------------------------
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG------------------------------ 50 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~------------------------------ 50 (191)
||||||..-.+.+.. .......+-.-+.+|.|||-|+.|+...
T Consensus 1 mCGI~g~~~~~~~~~-------~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~ 73 (670)
T PTZ00394 1 MCGIFGYANHNVPRT-------VEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNIS 73 (670)
T ss_pred CceEEEEECCCCccc-------cccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHH
Confidence 999999864321110 0013456677889999999888764321
Q ss_pred -----------------------CcEEEEEEeCC-----CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---
Q 029579 51 -----------------------DNVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (191)
Q Consensus 51 -----------------------~~~~lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~--- 96 (191)
++++|||+|.. +..+.||+.+.+++++++|||+|||+.+|+++| |+
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~ 153 (670)
T PTZ00394 74 QLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFS 153 (670)
T ss_pred HHHHHHhcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEec
Confidence 24799999932 235789998878899999999999999999998 44
Q ss_pred CCCCchHHHHH--HHHHHhhccCC-CChHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCC---------
Q 029579 97 AKSANEVILVI--EAYKALRDRAP-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITAD--------- 163 (191)
Q Consensus 97 ~~~d~e~~~~~--~~~~~~g~~~~-~~~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~~pL~y~~~~~--------- 163 (191)
+.+|||+++.+ ++|..||.... +++.+++++|+|+|||++.+.. .++|+++||+ +||++|...+
T Consensus 154 s~tDtEvi~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~ 230 (670)
T PTZ00394 154 SDTDTEVISVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKL 230 (670)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEecccccccccccc
Confidence 77888876322 33444442111 3567999999999999999644 4899999999 9999999631
Q ss_pred -----------CeEEEEechhhHhhhccCcceecCCCCC
Q 029579 164 -----------GHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 164 -----------~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+.++||||..||..++.+ +-.+++|++
T Consensus 231 ~~~~~~~~~~~~~~~~aSd~~a~~~~t~~-~~~l~dg~~ 268 (670)
T PTZ00394 231 QTYDLTDLSGPLEVFFSSDVNSFAEYTRE-VVFLEDGDI 268 (670)
T ss_pred ccccccccCCCCcEEEEeChHHHHHhhce-EEEecCCeE
Confidence 479999999999999865 888999874
No 37
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.94 E-value=9.5e-26 Score=208.98 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=135.3
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe--C----------------------------
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~--~---------------------------- 50 (191)
||||||..-...+. . .......+-.-+.+|.|||.|+.|+.+ +
T Consensus 1 mCGI~g~~~~~~~~---~----~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~ 73 (680)
T PLN02981 1 MCGIFAYLNYNVPR---E----RRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEV 73 (680)
T ss_pred CceEEEEEccCCcc---c----cccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhc
Confidence 99999976321010 0 001356777889999999999988654 1
Q ss_pred ------------CcEEEEEEeCCC-----CCCCCCeEee-CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHH
Q 029579 51 ------------DNVTLAYTHQNE-----SPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILV 106 (191)
Q Consensus 51 ------------~~~~lg~~r~~~-----~~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~ 106 (191)
++++|||+|..+ ..+.||+... .+.++++|||+|+|+.+|+++| |+ +.+|+|++
T Consensus 74 ~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi-- 151 (680)
T PLN02981 74 AETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVI-- 151 (680)
T ss_pred cccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHH--
Confidence 247999999332 3578999864 3679999999999999999998 44 67777775
Q ss_pred HHH----HHHhhcc-C--C--CChHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeC--C-----------
Q 029579 107 IEA----YKALRDR-A--P--YPPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITA--D----------- 163 (191)
Q Consensus 107 ~~~----~~~~g~~-~--~--~~~~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~--~----------- 163 (191)
+++ |+.||.. + . +++.+++++|+|+|||+++++.. ++++++||+ +||++|... +
T Consensus 152 ~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~ 228 (680)
T PLN02981 152 PKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSE 228 (680)
T ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccc
Confidence 565 4455422 1 1 35678999999999999999764 899999996 999999862 1
Q ss_pred ----------CeEEEEechhhHhhhccCcceecCCCCC
Q 029579 164 ----------GHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 164 ----------~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
+.++||||.+||..++ +.+..++||++
T Consensus 229 ~~~~~~~~~~~~~~~aSe~~al~~~~-~~~~~l~~gei 265 (680)
T PLN02981 229 GFLTKNRDKPKEFFLASDASAVVEHT-KRVLVIEDNEV 265 (680)
T ss_pred cccccccccCCcEEEEeCHHHHHHhc-CEEEEECCCeE
Confidence 3699999999999985 56999999974
No 38
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.94 E-value=1.3e-25 Score=169.22 Aligned_cols=120 Identities=26% Similarity=0.413 Sum_probs=102.7
Q ss_pred CCCCce--EeCCcEEEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHhC---C---CCCCchHHHHHH
Q 029579 42 SSAVSV--QVGDNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIE 108 (191)
Q Consensus 42 pd~~~~--~~~~~~~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l~---~---~~~d~e~~~~~~ 108 (191)
||..++ +..+.++|||+|..+ ..+.||+.+.+++++++|||+|+|+.+|+++++ + +.+|+|++ ++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii--~~ 78 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEII--AA 78 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHH--HH
Confidence 677766 778889999999321 234599966678899999999999999999883 3 56777775 67
Q ss_pred HHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEec
Q 029579 109 AYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (191)
Q Consensus 109 ~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe 171 (191)
+++++| +++++.|+|.|++++|+...++++++||++|.+||||+.. ++.++||||
T Consensus 79 li~~~g-------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 79 LIHRWG-------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHH-------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 888888 8899999999999999998899999999999999999998 678999998
No 39
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1e-24 Score=185.08 Aligned_cols=177 Identities=19% Similarity=0.258 Sum_probs=135.0
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC----------------------------Cc
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~----------------------------~~ 52 (191)
||||||......-.. .+. +....-+|.|||.++.++-.. ++
T Consensus 1 eCGv~Gi~~a~~~~~----------l~~-l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~ 69 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASR----------LPE-LALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGS 69 (474)
T ss_pred CCcEEEEEecCcccc----------CcH-HHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccc
Confidence 999999986433211 111 222236899999998875321 35
Q ss_pred EEEEEEeCCC-----CCCCCCeEee--CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHH---hhcc
Q 029579 53 VTLAYTHQNE-----SPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKA---LRDR 116 (191)
Q Consensus 53 ~~lg~~r~~~-----~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~---~g~~ 116 (191)
++|||+|.++ ..+.||++.. .+.+++.|||++.|+++||+++ |+ +.+|+|.++.+-++.- ++.+
T Consensus 70 ~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~ 149 (474)
T KOG0572|consen 70 IGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVD 149 (474)
T ss_pred eeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhccc
Confidence 7999999443 3679999865 4679999999999999999998 33 7888888754444431 1112
Q ss_pred CC---CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCC--C--eEEEEechhhHhhhccCcceecCCC
Q 029579 117 AP---YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITAD--G--HVAFADDADLLKGACGKSLASFPQG 189 (191)
Q Consensus 117 ~~---~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~--~--~~~faSe~~aL~~~~~~~~~~~ppG 189 (191)
++ ..+..+++.++|.||+++... +.|+++||++|.|||+.+...+ + .+++|||++++.++..+..+++.||
T Consensus 150 ~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PG 227 (474)
T KOG0572|consen 150 APDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPG 227 (474)
T ss_pred CccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCc
Confidence 22 256899999999999999985 6799999999999999998533 2 7999999999999988999999999
Q ss_pred C
Q 029579 190 G 190 (191)
Q Consensus 190 ~ 190 (191)
.
T Consensus 228 E 228 (474)
T KOG0572|consen 228 E 228 (474)
T ss_pred e
Confidence 6
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=8.4e-23 Score=183.83 Aligned_cols=169 Identities=18% Similarity=0.248 Sum_probs=135.5
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe---------------------------CCcE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~---------------------------~~~~ 53 (191)
||||+|-.....+ ....+.+-+++|.-||=|+.|+-. .+.+
T Consensus 1 MCGIvG~i~~~~~------------~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~ 68 (597)
T COG0449 1 MCGIVGYIGFLRE------------AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGV 68 (597)
T ss_pred CCcEEEEEcCCcc------------HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCce
Confidence 9999997743332 255677889999999999988532 1357
Q ss_pred EEEEEe-----CCCCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-CCh
Q 029579 54 TLAYTH-----QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-YPP 121 (191)
Q Consensus 54 ~lg~~r-----~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~~~ 121 (191)
+||||| .++..+++|+.+ +++++||||.|.||.+|+++| |+ +++|||++ .+++.++-+++. +++
T Consensus 69 gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi--~hLi~~~~~~~~~~a~ 144 (597)
T COG0449 69 GIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVI--AHLLEEIYDTSLLEAV 144 (597)
T ss_pred eeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHH--HHHHHHHHHhHHHHHH
Confidence 999999 234578899866 789999999999999999999 56 67777775 677765433222 466
Q ss_pred HHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCC
Q 029579 122 NHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGG 190 (191)
Q Consensus 122 ~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~ 190 (191)
..++++|+|+||+++.|... ++|++||.. .||+.|.. ++..++||+..|++..+.+ +..+.+|.
T Consensus 145 ~~~l~~l~Gsyal~~~~~~~p~~i~~ar~~---sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~dgd 209 (597)
T COG0449 145 KKVLKRLEGSYALLCTHSDFPDELVAARKG---SPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEEGD 209 (597)
T ss_pred HHHHHHhcceeEEEEEecCCCCeEEEEcCC---CCeEEEec-CCcceEecChhhhhhhhce-EEEeCCCC
Confidence 88999999999999999886 799999997 99999997 6789999999999999865 77777664
No 41
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.77 E-value=5.4e-18 Score=146.83 Aligned_cols=165 Identities=18% Similarity=0.205 Sum_probs=109.9
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEe-CCc----EEEEEEe-CCCCCCCCCeEeeCC
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GDN----VTLAYTH-QNESPLRQRSFAVKD 74 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~-~~~----~~lg~~r-~~~~~~~QP~~~~~~ 74 (191)
|||||-+..++-+ .. .....++|...++.||||..+... ... ...+++- ..-....||++. ++
T Consensus 1 MCGI~~s~~~~~~-l~---------~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpvv~-d~ 69 (520)
T KOG0573|consen 1 MCGIFLSVDKDLA-LN---------SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPVVE-DD 69 (520)
T ss_pred CceEEEeecCCcc-cc---------ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCceec-cc
Confidence 9999998765544 11 134567899999999999876332 221 1111221 111257899875 45
Q ss_pred cEEEEEEEEEechhhhHHHhCCCCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCCc
Q 029579 75 EIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (191)
Q Consensus 75 ~~~lv~nG~I~N~~eL~~~l~~~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~ 154 (191)
++++.|||+|||... ++.+.+...++..+...++ + ..|.+.++.++|+|+|++||.+.++||++||.+|+|
T Consensus 70 ~~vfl~NGeIyn~~~-------s~~~~d~~~l~~~l~~~~e-~-~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRr 140 (520)
T KOG0573|consen 70 RYVFLFNGEIYNGEK-------SDTLFDTDILAEELSNLKE-S-GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRR 140 (520)
T ss_pred ceEEEecceeccCCC-------ccccchHHHHHHHHhcCCc-c-ccHHHHHHhccCCceEEEEEccCcEEEEecccccce
Confidence 589999999999653 2233333333555554331 1 357899999999999999999999999999999999
Q ss_pred cEEEEEeCCCeEEEEechhhHhhhccCcceecCCC
Q 029579 155 PLYWGITADGHVAFADDADLLKGACGKSLASFPQG 189 (191)
Q Consensus 155 pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG 189 (191)
+|.|..+..+..++.|.... ..+.+.+|||+
T Consensus 141 SLly~~~~~~f~~~~st~g~----~~~~i~e~~~~ 171 (520)
T KOG0573|consen 141 SLLYSLDPFNFSLVLSTVGT----SGKLIYEVPPV 171 (520)
T ss_pred eeeEEeccCceeEEeecccc----CCccccccCch
Confidence 99999985553333333221 12345677776
No 42
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.70 E-value=1.8e-16 Score=138.49 Aligned_cols=129 Identities=15% Similarity=0.180 Sum_probs=95.2
Q ss_pred CcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEechhhhHHHhC--------------------C---CCCCch
Q 029579 51 DNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--------------------L---AKSANE 102 (191)
Q Consensus 51 ~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l~--------------------~---~~~d~e 102 (191)
+.++|+|+|.+++ ..+||+. +++|||||+|+..+++.+. + ..||++
T Consensus 201 s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~ 274 (413)
T cd00713 201 SAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSA 274 (413)
T ss_pred EEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHH
Confidence 4689999995543 3689974 4899999999988876551 1 367777
Q ss_pred HHHHHHHHHHhhccCC---CCh-------------------------HHHhhccccceeEEEEECCCCEEEEEEcCCCCc
Q 029579 103 VILVIEAYKALRDRAP---YPP-------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (191)
Q Consensus 103 ~~~~~~~~~~~g~~~~---~~~-------------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~ 154 (191)
++ ..+++-+-..+. +++ ..+++.++|+|++++.| .+.++++||++|.|
T Consensus 275 ~l--d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~d--g~~i~a~rDrnGlR 350 (413)
T cd00713 275 SL--DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTD--GRQVGASLDRNGLR 350 (413)
T ss_pred HH--HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEe--CCEEEEEeCCCCCc
Confidence 64 444432211121 111 15668899999999988 47899999999999
Q ss_pred cEEEEEeCCCeEEEEechhhHhhhccCcce---ecCCCC
Q 029579 155 PLYWGITADGHVAFADDADLLKGACGKSLA---SFPQGG 190 (191)
Q Consensus 155 pL~y~~~~~~~~~faSe~~aL~~~~~~~~~---~~ppG~ 190 (191)
||+|+.++++.++||||..++.. ....+. ++.||.
T Consensus 351 Pl~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe 388 (413)
T cd00713 351 PARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGE 388 (413)
T ss_pred ceEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCe
Confidence 99999886667999999999965 334465 789985
No 43
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.62 E-value=4e-15 Score=123.49 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=99.2
Q ss_pred CcEEEEEEeCC-----CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---C---C-CCCCchHHHHHHHHHHhhcc-C
Q 029579 51 DNVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G---L-AKSANEVILVIEAYKALRDR-A 117 (191)
Q Consensus 51 ~~~~lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~---~-~~~d~e~~~~~~~~~~~g~~-~ 117 (191)
++++|+|+|.. ...+.||+.. ++++++|||.|.|+++|+..+ + . +.+|+|++ ++++.+.... +
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~--~~li~~~l~~~~ 155 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELA--FALLLSRLLERD 155 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHH--HHHHHHHHHhcC
Confidence 45799999932 2367999976 489999999999999999886 2 2 57777775 4555433221 1
Q ss_pred -------CCChHHHhhccc-----cceeEEEEECCCCEEEEEEcCCCCccEEEEEeC-----------------CCeEEE
Q 029579 118 -------PYPPNHVVGHLS-----GYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA-----------------DGHVAF 168 (191)
Q Consensus 118 -------~~~~~~~~~~L~-----G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~-----------------~~~~~f 168 (191)
.+++.++++.|+ |.|++++.|. ++|+++||+. .+||||.... ++.++|
T Consensus 156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 232 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV 232 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence 135678889999 6888888874 7899999998 8999999863 368999
Q ss_pred EechhhHhhhccCcceecCCCC
Q 029579 169 ADDADLLKGACGKSLASFPQGG 190 (191)
Q Consensus 169 aSe~~aL~~~~~~~~~~~ppG~ 190 (191)
|||.-+... .|+++|||+
T Consensus 233 aSE~l~~~~----~w~~v~~ge 250 (257)
T cd01908 233 ASEPLTDDE----GWTEVPPGE 250 (257)
T ss_pred EeCCCCCCC----CceEeCCCE
Confidence 999988754 599999997
No 44
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.57 E-value=2.8e-14 Score=118.19 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=91.9
Q ss_pred cEEEEEEeCC-----C-CCCCCCeEeeCCcEEEEEEEEEechh-----hhHHHh---C--C--CCCCchHHHHHHHHHHh
Q 029579 52 NVTLAYTHQN-----E-SPLRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---G--L--AKSANEVILVIEAYKAL 113 (191)
Q Consensus 52 ~~~lg~~r~~-----~-~~~~QP~~~~~~~~~lv~nG~I~N~~-----eL~~~l---~--~--~~~d~e~~~~~~~~~~~ 113 (191)
.++|+|+|.. . ..+.||+.. ++++++|||.|.|++ +|+++| + . ..+|+|++ ++++.+.
T Consensus 83 ~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i--~~li~~~ 158 (251)
T TIGR03442 83 GCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHL--FALLLNR 158 (251)
T ss_pred ceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHH--HHHHHHH
Confidence 4699999922 2 258999974 689999999999997 565555 2 1 57777765 3444433
Q ss_pred hcc-CC----CChHHHhhccccc-------eeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccC
Q 029579 114 RDR-AP----YPPNHVVGHLSGY-------FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (191)
Q Consensus 114 g~~-~~----~~~~~~~~~L~G~-------fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~ 181 (191)
... .+ +++.++++.|.|. |++++.| .++|++.||+. ||||+.. ++.++||||. |-.. .
T Consensus 159 ~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sd--g~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l~~~--~ 228 (251)
T TIGR03442 159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTD--GSRLVATRWAD---TLYWLKD-PEGVIVASEP--YDDD--P 228 (251)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEc--CCEEEEEEeCC---eEEEEEc-CCEEEEEeCC--cCCC--C
Confidence 222 11 2456788888888 9999998 48999999985 9999997 4579999999 2211 2
Q ss_pred cceecCCCC
Q 029579 182 SLASFPQGG 190 (191)
Q Consensus 182 ~~~~~ppG~ 190 (191)
.|+++|||+
T Consensus 229 ~W~~v~pge 237 (251)
T TIGR03442 229 GWQDVPDRH 237 (251)
T ss_pred CceEeCCCe
Confidence 799999997
No 45
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.50 E-value=1.3e-13 Score=119.54 Aligned_cols=114 Identities=22% Similarity=0.228 Sum_probs=77.9
Q ss_pred eCCcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---C----------------CCCc
Q 029579 49 VGDNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---A----------------KSAN 101 (191)
Q Consensus 49 ~~~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~----------------~~d~ 101 (191)
+.++++|+|+|.++. ..+||+. +++|||+|.|+..+++.+ +. + .||+
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 445799999994432 4689986 899999999999998886 22 3 6777
Q ss_pred hHHHHHHHHHHhhccCC----------------------------CChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 102 EVILVIEAYKALRDRAP----------------------------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 102 e~~~~~~~~~~~g~~~~----------------------------~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
+++ ..+++..-..+. +.+..+++.++|+|++++.|. +.++++||+.|.
T Consensus 267 ~~l--~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GL 342 (361)
T PF00310_consen 267 EVL--DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGL 342 (361)
T ss_dssp HHH--HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--
T ss_pred HHH--HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCC
Confidence 764 344432222220 012466788999999999874 679999999999
Q ss_pred ccEEEEEeCCCeEEEEech
Q 029579 154 VPLYWGITADGHVAFADDA 172 (191)
Q Consensus 154 ~pL~y~~~~~~~~~faSe~ 172 (191)
||+.|+.++|+.+++|||.
T Consensus 343 RP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 343 RPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp S--EEEEETTCEEEEESST
T ss_pred cceEEEEECCCEEEEEeCC
Confidence 9999999867889999984
No 46
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.49 E-value=1.4e-13 Score=121.51 Aligned_cols=145 Identities=18% Similarity=0.276 Sum_probs=101.7
Q ss_pred Ceeeeccc--c-cCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC---------------------------
Q 029579 1 MLGVFSSA--I-VSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG--------------------------- 50 (191)
Q Consensus 1 m~gi~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~--------------------------- 50 (191)
|||||+-. + +++- .+.-.++.+=++.|..||=|+.|+-.+
T Consensus 1 MCGIF~Y~N~l~~R~R----------~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~ 70 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTR----------GEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQN 70 (670)
T ss_pred CcceeeeeccccCCcH----------HHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcC
Confidence 99999874 2 1221 113344555567788898888775321
Q ss_pred --------CcEEEEEEe-----CCCCCCCCCeEee-CCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHH
Q 029579 51 --------DNVTLAYTH-----QNESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY 110 (191)
Q Consensus 51 --------~~~~lg~~r-----~~~~~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~ 110 (191)
.+++|+|+| .....+.+|+.+. ...++++|||.|.||++|++.| |+ +++|||.+ +.++
T Consensus 71 ~~l~~~f~sH~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEci--aKL~ 148 (670)
T KOG1268|consen 71 LNLDEKFISHCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECI--AKLY 148 (670)
T ss_pred cccceeeeeeeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHH--HHHH
Confidence 257999999 3345678888754 4679999999999999999888 54 67777765 4555
Q ss_pred HHhhccCCC------ChHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEE
Q 029579 111 KALRDRAPY------PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGI 160 (191)
Q Consensus 111 ~~~g~~~~~------~~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~~pL~y~~ 160 (191)
...-++.++ -++.++++++|+|++++.... .+++.+.|+. .||..+.
T Consensus 149 ~~~~D~~~~~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rrg---SPlliGv 202 (670)
T KOG1268|consen 149 KHIYDTSPEDLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARKG---SPLLIGV 202 (670)
T ss_pred HHHHhhCCCcccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeeccC---Ccceeee
Confidence 432233221 147789999999999997755 4899999996 7777765
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.10 E-value=4.8e-10 Score=109.81 Aligned_cols=65 Identities=15% Similarity=0.157 Sum_probs=56.7
Q ss_pred HhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcce--ecCCCC
Q 029579 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQGG 190 (191)
Q Consensus 124 ~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~--~~ppG~ 190 (191)
.++-++|+|++++.| .+.+++.|||.|.|||.|+..+|+.+++|||..++.....+.++ ++.||.
T Consensus 332 lmEpwdGpaaiv~~~--g~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~PGe 398 (1485)
T PRK11750 332 HMEPWDGPAGIVMTD--GRYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGPGE 398 (1485)
T ss_pred hcccCCCCEEEEEEe--CCEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCCCe
Confidence 345579999999998 48999999999999999988766779999999999877777787 899996
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.37 E-value=2.6e-06 Score=71.41 Aligned_cols=128 Identities=17% Similarity=0.241 Sum_probs=64.9
Q ss_pred cEEEEEEeCC-----CCCCCCCeEee--CCcEEEEEEEEEechhhhHHH-hCC-CCCCchHHHHHHHHHHhhccC---C-
Q 029579 52 NVTLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQ-YGL-AKSANEVILVIEAYKALRDRA---P- 118 (191)
Q Consensus 52 ~~~lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~-l~~-~~~d~e~~~~~~~~~~~g~~~---~- 118 (191)
.+.|+|+|.. ...+.||+... .++.+++|||.|.+++.++.. +.. ..+|+|.+++ .++....+.+ .
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~-lll~~l~~~~~~~~~ 150 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFC-LLLDQLRDRGPDAPP 150 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHH-HHHHTTTTT-HH--H
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccccCCCcHHHHHHH-HHHHHHHHhCCcccc
Confidence 3589999922 23679999753 357999999999998766522 222 5778888643 2333221111 1
Q ss_pred ------CChHHHhhccc--cceeEEEEECCCCEEEEEEcCCCCccEEEE------------------------EeCCCeE
Q 029579 119 ------YPPNHVVGHLS--GYFAFIVYDKSTSTLFVASDQFGKVPLYWG------------------------ITADGHV 166 (191)
Q Consensus 119 ------~~~~~~~~~L~--G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~------------------------~~~~~~~ 166 (191)
+.+.+..+.+. |.++|++.|. +.|++.|+ ++|||. ...+..+
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~----~~l~~~~r~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 224 (271)
T PF13230_consen 151 ALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRY----TSLYYLTRRPPFGKARLFDEDYEVDFSEVTDPDDRAV 224 (271)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEE----ESSS----------------------EEEEETTTTEE
T ss_pred cHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEc----CCeeEEeccccccccccccchhhhhhhhccCCCCCEE
Confidence 12244455554 6788888884 79999998 233332 1123478
Q ss_pred EEEechhhHhhhccCcceecCCCC
Q 029579 167 AFADDADLLKGACGKSLASFPQGG 190 (191)
Q Consensus 167 ~faSe~~aL~~~~~~~~~~~ppG~ 190 (191)
+||||.-. . ...|.++|||+
T Consensus 225 vVaSePLt---~-~e~W~~vp~g~ 244 (271)
T PF13230_consen 225 VVASEPLT---D-DEDWEPVPPGS 244 (271)
T ss_dssp EEESS--------SS--EE--SSE
T ss_pred EEEeccCC---C-CCCeEEcCCCc
Confidence 89998654 1 23599999996
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.98 E-value=7e-05 Score=65.09 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred CCcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC
Q 029579 50 GDNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP 118 (191)
Q Consensus 50 ~~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~ 118 (191)
.+.++|+|+|.+++ ..+||+. .++|||||.++...++.+ +. +.+|+|.+ ..++-.....+.
T Consensus 201 ~s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~--a~l~p~~~~~~s 272 (371)
T COG0067 201 KSAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVL--AKLLPILMRGGS 272 (371)
T ss_pred ceeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHH--HHHHHHhcccCC
Confidence 35689999995432 4588873 469999999988776665 22 67777664 233311100000
Q ss_pred ----------------CChHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhh
Q 029579 119 ----------------YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGA 178 (191)
Q Consensus 119 ----------------~~~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~ 178 (191)
.+ ..-...+.|+||+++-... .....+.+|+.+.+|.+-+-. +..|.++|+..|++..
T Consensus 273 Ds~~~dn~lE~l~~~G~~-l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldr 347 (371)
T COG0067 273 DSASLDNALELLLLGGRD-LYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDR 347 (371)
T ss_pred cchhhhHHHHHHHhcCcC-chhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeecc
Confidence 01 1223455666665553311 234445555555555555544 3445555555555443
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.92 E-value=0.00025 Score=55.39 Aligned_cols=90 Identities=21% Similarity=0.318 Sum_probs=61.1
Q ss_pred CcEEEEEEEEEechhhhHHHhCC------CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEE
Q 029579 74 DEIFCLFEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (191)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~l~~------~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~a 147 (191)
.+-..-.-|.|||+.-|+.-.++ .-+|.|+ ++..+.+.| ..++.--+|+|+|.|=|+ +++|.+.
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~El--L~~~~~~lG-------~~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAEL--LYTIFTRLG-------NSALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHH--HHHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEE
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHH--HHHHHHHhh-------hhhhhhhcCceEEEEecC-CCcEEEE
Confidence 34455667999999888766664 3455555 467788888 899999999999999776 6899999
Q ss_pred EcCCCCccEEEEEeCCCeEEEEechhhH
Q 029579 148 SDQFGKVPLYWGITADGHVAFADDADLL 175 (191)
Q Consensus 148 RD~~G~~pL~y~~~~~~~~~faSe~~aL 175 (191)
.|+-|..|.|.-.. +..++...+|-.
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V 142 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLV 142 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHH
T ss_pred ecCCCCceEEEEec--CceEEecceEEE
Confidence 99999999998775 357777776654
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.90 E-value=0.056 Score=44.99 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=29.8
Q ss_pred cEEEEEEeCC-----CCCCCCCeEee--CCcEEEEEEEEEechhhh
Q 029579 52 NVTLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSL 90 (191)
Q Consensus 52 ~~~lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL 90 (191)
.+.|+|+|.. ...+.||++.+ ....+++|||.|.+++.+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 4799999922 23678999865 345799999999999874
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=91.97 E-value=0.69 Score=46.22 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=38.2
Q ss_pred hhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhH
Q 029579 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLL 175 (191)
Q Consensus 125 ~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL 175 (191)
++-.+|+--+.+-| .+.+-+.=||.|.||-=|+.+.|+.+++|||.-.+
T Consensus 407 MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv 455 (2142)
T KOG0399|consen 407 MEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVV 455 (2142)
T ss_pred CCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeeccccc
Confidence 45667776655555 46778888999999998888778899999997654
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=87.35 E-value=0.47 Score=41.59 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=28.7
Q ss_pred CeeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccC-CCCCceE
Q 029579 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTN-SSAVSVQ 48 (191)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rg-pd~~~~~ 48 (191)
||||.+....++. ++...-+...+|+..|.||| +++.+..
T Consensus 12 aCGig~i~~~~g~--------~sh~iv~~~~~~L~~m~hRG~~~adg~~ 52 (371)
T COG0067 12 ACGIGGIAHKDGR--------PSHKIVEDALEALVNLTHRGAPGADGYA 52 (371)
T ss_pred cCcEEEEEecCCC--------cchhHHHHHHHHHHhhhccCCCCCCccc
Confidence 8999998754332 01226788999999999999 6666543
No 54
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=70.26 E-value=1.4 Score=25.22 Aligned_cols=9 Identities=44% Similarity=0.866 Sum_probs=7.4
Q ss_pred Ceeeecccc
Q 029579 1 MLGVFSSAI 9 (191)
Q Consensus 1 m~gi~~~~~ 9 (191)
|||||+..+
T Consensus 1 M~GIFSKE~ 9 (38)
T PF10736_consen 1 MNGIFSKEV 9 (38)
T ss_pred CcccccHhh
Confidence 899998763
No 55
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=56.78 E-value=7.6 Score=34.03 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=18.7
Q ss_pred chhhHHHHHHHhHccCC------CCCceE
Q 029579 26 PKTTSTALVDRFLQTNS------SAVSVQ 48 (191)
Q Consensus 26 ~~~~~~~m~~~l~~Rgp------d~~~~~ 48 (191)
.-+...+++..|.|||. |+.|+-
T Consensus 17 iv~~~l~~L~~m~HRG~~d~~tGDGAGi~ 45 (361)
T PF00310_consen 17 IVDDALEALKRMEHRGGVDGNTGDGAGIL 45 (361)
T ss_dssp HHHHHHHHHHHHGGGSTBTSSCESEEEEE
T ss_pred HHHHHHHHHhcccccCCCCCCCCcceEEE
Confidence 56778899999999999 776653
No 56
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=55.62 E-value=19 Score=23.34 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=19.9
Q ss_pred eeEEEEECCCCEEEEEEcCCCC--ccEEE
Q 029579 132 FAFIVYDKSTSTLFVASDQFGK--VPLYW 158 (191)
Q Consensus 132 fa~vi~d~~~~~l~~aRD~~G~--~pL~y 158 (191)
+.-+++|...+++++..|. |+ |||+.
T Consensus 33 ~vsi~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 33 EVSIVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp TSEEEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred eeEEEEeccCCEEEEEccC-CcccceeEE
Confidence 4446789889999999996 76 88876
No 57
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=46.19 E-value=13 Score=28.66 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.4
Q ss_pred CcEEEEEEEEEechhhhHH
Q 029579 74 DEIFCLFEGALDNLGSLRQ 92 (191)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (191)
+++.+|+||+|.|.+.+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987754
No 58
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=45.34 E-value=14 Score=28.54 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.4
Q ss_pred CcEEEEEEEEEechhhhHH
Q 029579 74 DEIFCLFEGALDNLGSLRQ 92 (191)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (191)
+++.+|+||+|.|.+.+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987754
No 59
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=41.16 E-value=12 Score=28.25 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=17.7
Q ss_pred ccceeEEEEECCCCEEEEEEcCCCCccEE
Q 029579 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLY 157 (191)
Q Consensus 129 ~G~fa~vi~d~~~~~l~~aRD~~G~~pL~ 157 (191)
+|.|+++++.. ++++-..+ -|++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~-rGv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDG-RGVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE---STTHHHH
T ss_pred hCCceEEEEeC--CEEEEeCC-CChHHHH
Confidence 46799999874 56666555 5999998
No 60
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=28.85 E-value=69 Score=23.24 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.4
Q ss_pred ChHHHhhccccceeEEEEECCCCEE
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l 144 (191)
++.+++...+|.|++..|--.+..+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 4578999999999999998766554
No 61
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=25.43 E-value=32 Score=23.86 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=15.7
Q ss_pred EEEEcCCCCccEEEEEeCCC
Q 029579 145 FVASDQFGKVPLYWGITADG 164 (191)
Q Consensus 145 ~~aRD~~G~~pL~y~~~~~~ 164 (191)
-..++.+|++|||-|...|+
T Consensus 27 ~~~~~e~gIk~lyrGvskdD 46 (86)
T PF12594_consen 27 QAMHKEFGIKSLYRGVSKDD 46 (86)
T ss_pred HHHHHhcCCeEEEEecccCC
Confidence 34568899999999997653
Done!