Query 029579
Match_columns 191
No_of_seqs 186 out of 1500
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 01:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029579.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029579hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 4.9E-37 1.7E-41 277.4 18.0 171 2-191 1-179 (553)
2 1xff_A D-fructose-6-, glucosam 100.0 4E-34 1.4E-38 233.7 18.4 168 2-191 1-211 (240)
3 1ao0_A Glutamine phosphoribosy 100.0 4.9E-34 1.7E-38 252.7 15.7 172 2-191 1-214 (459)
4 1ecf_A Glutamine phosphoribosy 100.0 6.8E-31 2.3E-35 235.0 19.4 174 2-191 1-229 (504)
5 2bpl_A Glucosamine--fructose-6 100.0 1.1E-30 3.6E-35 238.3 14.9 168 2-191 1-211 (608)
6 1jgt_A Beta-lactam synthetase; 100.0 4.3E-28 1.5E-32 217.3 13.1 115 65-191 56-192 (513)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 1E-26 3.5E-31 207.9 4.6 128 51-191 26-185 (503)
8 3mdn_A Glutamine aminotransfer 99.9 4.6E-23 1.6E-27 171.4 10.3 131 52-191 82-244 (274)
9 1te5_A Conserved hypothetical 99.8 1.5E-21 5.1E-26 160.9 0.1 131 52-191 72-243 (257)
10 1ea0_A Glutamate synthase [NAD 99.6 3.8E-15 1.3E-19 144.7 9.9 132 51-190 202-389 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.5 2.4E-14 8.3E-19 139.3 11.0 132 51-190 198-388 (1520)
12 1vk9_A Conserved hypothetical 44.4 5.7 0.00019 29.4 0.4 26 129-157 27-52 (151)
13 4afx_B Protein Z dependent pro 26.9 80 0.0027 16.9 3.5 21 128-148 8-29 (36)
14 2riv_B Thyroxine-binding globu 25.8 90 0.0031 17.2 3.7 21 128-148 12-33 (40)
15 2xn6_B Thyroxine-binding globu 24.2 90 0.0031 16.6 3.7 21 128-148 7-28 (35)
16 1m40_A TEM-1, beta-lactamase T 24.0 80 0.0027 24.1 4.1 44 122-177 9-52 (263)
17 3ndd_B Alpha-1-antitrypsin; se 23.9 86 0.003 16.8 3.1 21 128-148 8-29 (36)
18 1n9b_A Penicillinase, beta-lac 21.8 93 0.0032 23.8 4.1 44 122-177 9-52 (265)
19 2wk0_A Beta-lactamase; hydrola 21.4 97 0.0033 23.7 4.1 44 121-177 8-51 (265)
20 2h4p_B MENT, heterochromatin-a 21.3 1E+02 0.0035 16.2 3.7 16 128-143 7-22 (34)
21 2p74_A Beta-lactamase CTX-M-9A 20.9 1.2E+02 0.004 23.0 4.5 43 122-177 10-52 (263)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=4.9e-37 Score=277.37 Aligned_cols=171 Identities=22% Similarity=0.410 Sum_probs=145.6
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeCCcEEEEEEeCC---CCCCCCCeEeeCCcEEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQN---ESPLRQRSFAVKDEIFC 78 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~~~~~lg~~r~~---~~~~~QP~~~~~~~~~l 78 (191)
|||+|..-.+... ......+.+|++.|.|||||+.+++..++++|||+|.. ...+.||+.+.++++++
T Consensus 1 CGI~G~~~~~~~~---------~~~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~l 71 (553)
T 1ct9_A 1 ASIFGVFDIKTDA---------VELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVL 71 (553)
T ss_dssp CEEEEEESCCSCH---------HHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEE
T ss_pred CEEEEEEcCCCcc---------hhHHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEE
Confidence 9999976322110 00245677899999999999999999989999999933 22689999987788999
Q ss_pred EEEEEEechhhhHHHhC--C---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 79 LFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 79 v~nG~I~N~~eL~~~l~--~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
+|||+|||+.+|+++|. + +.+|||++ +++|++|| .++++.|+|+|||++||..+++|+++||++|+
T Consensus 72 v~NGeIyN~~eLr~~L~~~~~f~s~sDtEvi--l~l~~~~g-------~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~ 142 (553)
T 1ct9_A 72 AVNGEIYNHQALRAEYGDRYQFQTGSDCEVI--LALYQEKG-------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLGI 142 (553)
T ss_dssp EEEEEETTHHHHHHHHTTTSCCCSCCTTHHH--HHHHHHHT-------TTTGGGCCEEEEEEEEETTTTEEEEEECTTCC
T ss_pred EEEEEEECHHHHHHHHhccCccCCCCcHHHH--HHHHHHHH-------HHHHHhCCccEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999999984 2 67888875 79999998 88999999999999999988999999999999
Q ss_pred ccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 154 ~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
|||||+...++.++||||+++|...+ +.++.|||||+
T Consensus 143 ~PLy~~~~~~~~~~faSe~~al~~~~-~~i~~l~pG~~ 179 (553)
T 1ct9_A 143 IPLYMGYDEHGQLYVASEMKALVPVC-RTIKEFPAGSY 179 (553)
T ss_dssp SCCEEEECTTCCEEEESSGGGTTTTC-SEEEECCTTEE
T ss_pred CCeEEEEecCCEEEEeechHHHHhhc-CCEEEECCCeE
Confidence 99999995356899999999998876 46999999985
No 2
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=4e-34 Score=233.72 Aligned_cols=168 Identities=17% Similarity=0.215 Sum_probs=137.8
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceE-e---------------------------CCcE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQ-V---------------------------GDNV 53 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~-~---------------------------~~~~ 53 (191)
|||+|..-.+. ....+..|++.|.|||||+.+++ . .+++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~ 67 (240)
T 1xff_A 1 CGIVGAIAQRD-------------VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (240)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSE
T ss_pred CcEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccE
Confidence 99999863221 13567789999999999999987 5 3579
Q ss_pred EEEEEeCC-----CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---C
Q 029579 54 TLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (191)
Q Consensus 54 ~lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~ 119 (191)
+|||+|.. ...+.||+.+ ++++++|||+|||+.+|+++| |+ +.+|||++ +++|+.++..+. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~g~~~~~ 143 (240)
T 1xff_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (240)
T ss_dssp EEEEEECCSSSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHH--HHHHHHHHHTSSCHHH
T ss_pred EEEEEeccCCCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 99999932 2357999987 789999999999999999988 44 67777775 788988864232 2
Q ss_pred ChHHHhhccccceeEEEEECC-CCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~-~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.++++.|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.+||...+.+ +.+||||++
T Consensus 144 ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pG~~ 211 (240)
T 1xff_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEEGDI 211 (240)
T ss_dssp HHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSE-EEECCTTCE
T ss_pred HHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCe-EEEECCCEE
Confidence 445899999999999999985 6899999998 99999997 5679999999999888765 999999984
No 3
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=4.9e-34 Score=252.71 Aligned_cols=172 Identities=17% Similarity=0.159 Sum_probs=140.0
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC---------------------------CcEE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~---------------------------~~~~ 54 (191)
|||||..-.+. ....+..|+.+|.|||||+.+++.. ++++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~ 67 (459)
T 1ao0_A 1 CGVFGIWGHEE-------------APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGA 67 (459)
T ss_dssp CEEEEEESCTB-------------HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEE
T ss_pred CEEEEEECCcc-------------hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEE
Confidence 99999863211 1345668999999999999987653 4689
Q ss_pred EEEEeCCC-----CCCCCCeEe---eCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC-C
Q 029579 55 LAYTHQNE-----SPLRQRSFA---VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (191)
Q Consensus 55 lg~~r~~~-----~~~~QP~~~---~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~-~ 119 (191)
|||+|..+ ..+.||+.. .+++++++|||+|+|+.+|+++| |+ +.+|||++ +++|.+|++... +
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~~~~~ 145 (459)
T 1ao0_A 68 IGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVL--AHLIKRSGHFTLKD 145 (459)
T ss_dssp EEEEECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHH--HHHHHTCCCSSHHH
T ss_pred EEEEecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhccCCHHH
Confidence 99999432 257999986 45789999999999999999988 44 56666664 789988752211 2
Q ss_pred ChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.+++++|+|+|||++|| .++|+++||++|+|||||+.. ++.++||||.++|.....+.|+++||||+
T Consensus 146 a~~~~~~~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~ 214 (459)
T 1ao0_A 146 QIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEM 214 (459)
T ss_dssp HHHHHHTTCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEE
T ss_pred HHHHHHHhhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEE
Confidence 4578999999999999999 479999999999999999998 57899999999998876567999999984
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=6.8e-31 Score=234.97 Aligned_cols=174 Identities=16% Similarity=0.138 Sum_probs=137.3
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC----------------------------CcE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~----------------------------~~~ 53 (191)
|||||...... ....+..|+.+|.|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~ 67 (504)
T 1ecf_A 1 CGIVGIAGVMP-------------VNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNM 67 (504)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSE
T ss_pred CEEEEEEcChh-------------HHHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCE
Confidence 99999863211 2346778999999999999997753 368
Q ss_pred EEEEEeCCC-----CCCCCCeEeeC-CcEEEEEEEEEechhhhHHHh----CC---CCCCchHHHHHHHHHHhhcc-CC-
Q 029579 54 TLAYTHQNE-----SPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR-AP- 118 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~~-~~~~lv~nG~I~N~~eL~~~l----~~---~~~d~e~~~~~~~~~~~g~~-~~- 118 (191)
+|||+|..+ ..+.||+.... .+++++|||+|+|+.+|+++| +. +.+|||++ +++|.++... +.
T Consensus 68 ~igH~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi--~~l~~~~~~~~g~~ 145 (504)
T 1ecf_A 68 GIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEIL--LNIFASELDNFRHY 145 (504)
T ss_dssp EEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHH--HHHHHHHHTTCCSS
T ss_pred EEEEEccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHH--HHHHHHHHHhcccc
Confidence 999999432 36899998643 469999999999999999987 22 56777765 7888765321 11
Q ss_pred --------CChHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeC--C--CeEEEEechhhHhhhccCcceec
Q 029579 119 --------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA--D--GHVAFADDADLLKGACGKSLASF 186 (191)
Q Consensus 119 --------~~~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~--~--~~~~faSe~~aL~~~~~~~~~~~ 186 (191)
+++.+++++|+|+|||++|+. .++|+++||++|+|||||+... + +.++||||.+||.....+.++++
T Consensus 146 ~~~~~~~~~a~~~~~~~l~G~fa~v~~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l 224 (504)
T 1ecf_A 146 PLEADNIFAAIAATNRLIRGAYACVAMII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDV 224 (504)
T ss_dssp SCCHHHHHHHHHHHHHHCCEEEEEEEEET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEEC
T ss_pred ccccccHHHHHHHhhhhcCccceEEEEEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEEC
Confidence 234578999999999999985 4589999999999999999862 3 37999999999998877779999
Q ss_pred CCCCC
Q 029579 187 PQGGF 191 (191)
Q Consensus 187 ppG~~ 191 (191)
+||++
T Consensus 225 ~PGe~ 229 (504)
T 1ecf_A 225 APGEA 229 (504)
T ss_dssp CTTEE
T ss_pred CCCeE
Confidence 99974
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.97 E-value=1.1e-30 Score=238.31 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=137.0
Q ss_pred eeeecccccCCchhhhccCCCCCCchhhHHHHHHHhHccCCCCCceEeC----------------------------CcE
Q 029579 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (191)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~Rgpd~~~~~~~----------------------------~~~ 53 (191)
|||+|..-.+. ....+..|++.|.|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~ 67 (608)
T 2bpl_A 1 CGIVGAIAQRD-------------VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (608)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSE
T ss_pred CeEEEEEcCCc-------------hHHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCE
Confidence 99999863221 2456788999999999999997743 468
Q ss_pred EEEEEeCCC-----CCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---CC---CCCCchHHHHHHHHHHhhccCC---C
Q 029579 54 TLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (191)
Q Consensus 54 ~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~~---~~~d~e~~~~~~~~~~~g~~~~---~ 119 (191)
+|||+|..+ ..+.||+.+ ++++++|||+|+|+.+|+++| |+ +.+|||++ +++|.+|-..|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi--~~l~~~~~~~g~~~~~ 143 (608)
T 2bpl_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (608)
T ss_dssp EEEEEECCCSSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHH--HHHHHHHHTTCCCHHH
T ss_pred EEEEEccCCCCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 999999432 357899987 789999999999999999988 54 56666664 788887732232 3
Q ss_pred ChHHHhhccccceeEEEEECCC-CEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhccCcceecCCCCC
Q 029579 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 120 ~~~~~~~~L~G~fa~vi~d~~~-~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~~~ppG~~ 191 (191)
++.+++++|+|+|||++||..+ ++|+++||+ |||||+.. ++.++||||.++|...+. .+.+++||++
T Consensus 144 av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~-~~~~l~~G~i 211 (608)
T 2bpl_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDI 211 (608)
T ss_dssp HHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCC-EEEECCTTCE
T ss_pred HHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCC-eEEEECCCeE
Confidence 4568999999999999999887 899999997 99999997 567999999999998875 5999999974
No 6
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.95 E-value=4.3e-28 Score=217.26 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=101.1
Q ss_pred CCCCeEeeC----CcEEEEEEEEEechhhhHHHhCC---CCCCchHHHHHHHHHHhhccCCCChHHHhhccccceeEEEE
Q 029579 65 LRQRSFAVK----DEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVY 137 (191)
Q Consensus 65 ~~QP~~~~~----~~~~lv~nG~I~N~~eL~~~l~~---~~~d~e~~~~~~~~~~~g~~~~~~~~~~~~~L~G~fa~vi~ 137 (191)
..||++..+ ++++++|||+|||+.+|+++|++ +.+|||++ +++|++|| .+++++|+|+|||++|
T Consensus 56 ~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvi--l~l~~~~g-------~~~~~~l~G~fA~~i~ 126 (513)
T 1jgt_A 56 VAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELV--LRLLERYD-------LHAFRLVNGRFATVVR 126 (513)
T ss_dssp SCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHH--HHHHHHHG-------GGGGGTCCEEEEEEEE
T ss_pred cCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHH--HHHHHHHh-------HHhHhhcCeeEEEEEE
Confidence 479987654 78999999999999999999864 56777764 89999999 8999999999999999
Q ss_pred ECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhhhc---------------cCcceecCCCCC
Q 029579 138 DKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGAC---------------GKSLASFPQGGF 191 (191)
Q Consensus 138 d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~~~---------------~~~~~~~ppG~~ 191 (191)
|.. +|+++||++|+|||||+.. ++.++||||+++|...+ .+.++.+||||+
T Consensus 127 d~~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~~~t~~~~i~~l~pG~~ 192 (513)
T 1jgt_A 127 TGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADARRVAGLTGVYQVPAGAV 192 (513)
T ss_dssp ETT--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSEECSSCSSCEECCTTEE
T ss_pred ECC--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCCccccccceEEcCCCcE
Confidence 974 4999999999999999987 67899999999998876 267999999985
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.93 E-value=1e-26 Score=207.88 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=109.8
Q ss_pred CcEEEEEEeC--CCCCCCCCeEeeCCcEEEEEEEEEechh---hhHHHhC-C--CCCCchHHHHHHHHHHhhccCCCChH
Q 029579 51 DNVTLAYTHQ--NESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQYG-L--AKSANEVILVIEAYKALRDRAPYPPN 122 (191)
Q Consensus 51 ~~~~lg~~r~--~~~~~~QP~~~~~~~~~lv~nG~I~N~~---eL~~~l~-~--~~~d~e~~~~~~~~~~~g~~~~~~~~ 122 (191)
++++|||+|. ....+.||+.+.++.++++ |+|||+. +|+++|. . +.+|+|++ +++|++|| .
T Consensus 26 ~~~~igh~R~~t~~~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvi--l~l~~~~g-------~ 94 (503)
T 1q15_A 26 KGEALSNGYLFIEQNGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELL--ALLFTRLG-------A 94 (503)
T ss_dssp EEEEETTEEEEEETTCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHH--HHHHHHHC-------G
T ss_pred CceeEeeeeEEEcCCCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHH--HHHHHHHH-------H
Confidence 4799999993 3357899998877777777 9999999 9999883 2 66777775 79999998 8
Q ss_pred HHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCe-----------------EEEEechhhHhhh-------
Q 029579 123 HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGH-----------------VAFADDADLLKGA------- 178 (191)
Q Consensus 123 ~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~-----------------~~faSe~~aL~~~------- 178 (191)
++++.|+|+|||++||..++ |+++||++|+|||||+.. ++. ++||||+++|...
T Consensus 95 ~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T 172 (503)
T 1q15_A 95 NALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYT 172 (503)
T ss_dssp GGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCC
T ss_pred HHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCc
Confidence 89999999999999998877 999999999999999986 566 9999999999875
Q ss_pred ccCcceecCCCCC
Q 029579 179 CGKSLASFPQGGF 191 (191)
Q Consensus 179 ~~~~~~~~ppG~~ 191 (191)
..+.++.+||||+
T Consensus 173 ~~~~v~~l~pG~~ 185 (503)
T 1q15_A 173 PVKNAQRLKPGAV 185 (503)
T ss_dssp SBTTEEECCSSEE
T ss_pred ccCCeEEECCCeE
Confidence 1457999999985
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.89 E-value=4.6e-23 Score=171.40 Aligned_cols=131 Identities=13% Similarity=0.083 Sum_probs=96.7
Q ss_pred cEEEEEEeCC-----CCCCCCCeEeeCCcEEEEEEEEEechhhhHHHh---C--C------CCCCchHHHHHHHHHHhhc
Q 029579 52 NVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G--L------AKSANEVILVIEAYKALRD 115 (191)
Q Consensus 52 ~~~lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---~--~------~~~d~e~~~~~~~~~~~g~ 115 (191)
+++|||+|.. ...+.||+.. ++++++|||+|+|+.+|+++| + . +.+|||++ +++|..++.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi--~~l~~~~~~ 157 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVL--FLLALSEGL 157 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHH--HHHHHHTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHH--HHHHHHhhh
Confidence 4689999932 2367999986 689999999999999999887 3 1 45666664 678866653
Q ss_pred cCC--CChHHHhhccccc-----------eeEEEEECCCCEEEEEEcC-CCCccEEEEEeCC--CeEEEEechhhHhhhc
Q 029579 116 RAP--YPPNHVVGHLSGY-----------FAFIVYDKSTSTLFVASDQ-FGKVPLYWGITAD--GHVAFADDADLLKGAC 179 (191)
Q Consensus 116 ~~~--~~~~~~~~~L~G~-----------fa~vi~d~~~~~l~~aRD~-~G~~pL~y~~~~~--~~~~faSe~~aL~~~~ 179 (191)
... +++.++++.|+|. |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |...+
T Consensus 158 ~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~ 233 (274)
T 3mdn_A 158 EHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE 233 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC
T ss_pred cCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC
Confidence 221 3567899999998 99999984 789999998 9999977776533 689999999 43333
Q ss_pred cCcceecCCCCC
Q 029579 180 GKSLASFPQGGF 191 (191)
Q Consensus 180 ~~~~~~~ppG~~ 191 (191)
..|++||||++
T Consensus 234 -~~~~~v~pGei 244 (274)
T 3mdn_A 234 -GDWTELRPGRM 244 (274)
T ss_dssp -SCCEECCSSEE
T ss_pred -ceEEEECcCEE
Confidence 45999999973
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.81 E-value=1.5e-21 Score=160.89 Aligned_cols=131 Identities=14% Similarity=0.094 Sum_probs=94.1
Q ss_pred cEEEEEEeCC-----CCCCCCCeEee--CCcEEEEEEEEEechhhhHHHhCC--CCCCchHHHHHHHHHHhhcc----CC
Q 029579 52 NVTLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQYGL--AKSANEVILVIEAYKALRDR----AP 118 (191)
Q Consensus 52 ~~~lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l~~--~~~d~e~~~~~~~~~~~g~~----~~ 118 (191)
+++|||+|.. ...+.||+... .++++++|||.|.|+.+ ++++.. +.+|||++ ++++.+.... .+
T Consensus 72 ~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi--~~li~~~~~~~~~~~~ 148 (257)
T 1te5_A 72 ETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAA--FCDLLNRVRRAFPEPV 148 (257)
T ss_dssp EEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHH--HHHHHHHHHHHCSSCC
T ss_pred cEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHH--HHHHHHHHHHhcCCCc
Confidence 4799999932 23579999865 45799999999999998 666543 67777775 4555432211 11
Q ss_pred --CChHHHhhccc------cceeEEEEECCCCEEEEEEc----------CCCCccEEE-------EE---eCCCeEEEEe
Q 029579 119 --YPPNHVVGHLS------GYFAFIVYDKSTSTLFVASD----------QFGKVPLYW-------GI---TADGHVAFAD 170 (191)
Q Consensus 119 --~~~~~~~~~L~------G~fa~vi~d~~~~~l~~aRD----------~~G~~pL~y-------~~---~~~~~~~faS 170 (191)
+++.++++.+. |.|++++.| .++|+++|| ++|.|||+. +. ..++.++|||
T Consensus 149 ~~~a~~~al~~l~~~~~~~G~~n~~l~~--g~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvAS 226 (257)
T 1te5_A 149 PVEVLLPVLISACDEYRKKGVFNALISD--GDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIAT 226 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTTBCCEEEEES--SSCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEEc--CCEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEe
Confidence 34456666665 999999988 478999999 999999975 31 1123699999
Q ss_pred chhhHhhhccCcceecCCCCC
Q 029579 171 DADLLKGACGKSLASFPQGGF 191 (191)
Q Consensus 171 e~~aL~~~~~~~~~~~ppG~~ 191 (191)
|. |.. .+.|+++|||+.
T Consensus 227 E~--l~~--~~~wr~v~pGe~ 243 (257)
T 1te5_A 227 EP--LTD--NENWTLQQSGEW 243 (257)
T ss_dssp SC--SSS--SSSCEEECTTCE
T ss_pred Cc--cCC--CCCeeEeCCCEE
Confidence 95 442 457999999973
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.58 E-value=3.8e-15 Score=144.67 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=97.9
Q ss_pred CcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEechhhhHHHh-------------------C-C---CCCCch
Q 029579 51 DNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQY-------------------G-L---AKSANE 102 (191)
Q Consensus 51 ~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l-------------------~-~---~~~d~e 102 (191)
++++|+|+|.++. .++||+. +++|||+|.|+..+++++ + . +.+|||
T Consensus 202 g~~aigH~RySTnt~p~w~~AQPf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSe 275 (1479)
T 1ea0_A 202 SDFAIYHQRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSG 275 (1479)
T ss_dssp BSEEEEEECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHH
T ss_pred eeEEEeeecccCCCCCCcccCCccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHH
Confidence 4589999995442 4689984 389999999999988552 1 1 567777
Q ss_pred HHHH-HHHHHHhhccCCCCh-------------------------HHHhhccccceeEEEEECCCCEEEEEEcCCCCccE
Q 029579 103 VILV-IEAYKALRDRAPYPP-------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPL 156 (191)
Q Consensus 103 ~~~~-~~~~~~~g~~~~~~~-------------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL 156 (191)
++.. ++++.+.|..=++++ ..+++.++|+|++++.| .+.++++|||+|.|||
T Consensus 276 vld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~d--g~~l~a~~DrnGlRPl 353 (1479)
T 1ea0_A 276 SLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTD--GRWVVGGMDRNGLRPM 353 (1479)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECS--SSEEEEECCTTCCSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEe--CCEEEEEecCCCCcce
Confidence 7521 333322221000011 24468999999999977 4899999999999999
Q ss_pred EEEEeCCCeEEEEechhhHhhhccCcce--ecCCCC
Q 029579 157 YWGITADGHVAFADDADLLKGACGKSLA--SFPQGG 190 (191)
Q Consensus 157 ~y~~~~~~~~~faSe~~aL~~~~~~~~~--~~ppG~ 190 (191)
.|+.++|+.+++|||..+|...+.+.++ ++.||.
T Consensus 354 ~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGe 389 (1479)
T 1ea0_A 354 RYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGE 389 (1479)
T ss_dssp EEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTC
T ss_pred EEEEECCCEEEEEcccccccCcchheeeccCCCCCe
Confidence 9999866789999999999777667777 999996
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.53 E-value=2.4e-14 Score=139.34 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=96.6
Q ss_pred CcEEEEEEeCCCC-----CCCCCeEeeCCcEEEEEEEEEechhhhH------HH-----------h---C-C---CCCCc
Q 029579 51 DNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLR------QQ-----------Y---G-L---AKSAN 101 (191)
Q Consensus 51 ~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~------~~-----------l---~-~---~~~d~ 101 (191)
+.++|+|+|.++. .++||+. +++|||+|.|...++ +. + + . +.+||
T Consensus 198 g~~aigH~RySTnt~p~w~~AQPf~------~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDS 271 (1520)
T 1ofd_A 198 SNFAVYHRRFSTNTMPKWPLAQPMR------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDS 271 (1520)
T ss_dssp BSEEEEEECCCSSSCCCGGGSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHH
T ss_pred eeEEEEEccccCCCCCCcccCCchh------eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcH
Confidence 3689999995543 3589984 389999998887776 21 1 3 2 67888
Q ss_pred hHHHH-HHHHHHhhccCCCCh---------------------------HHHhhccccceeEEEEECCCCEEEEEEcCCCC
Q 029579 102 EVILV-IEAYKALRDRAPYPP---------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (191)
Q Consensus 102 e~~~~-~~~~~~~g~~~~~~~---------------------------~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (191)
|++.. ++++.+.|..=++++ ..+++.++|+|++++.|. +.++++|||.|.
T Consensus 272 e~ld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGl 349 (1520)
T 1ofd_A 272 YNLDSALELLVRTGRSPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGL 349 (1520)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCC
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCC
Confidence 87521 233333221000011 223689999999999884 899999999999
Q ss_pred ccEEEEEeCCCeEEEEechhhHhhhccCcce--ecCCCC
Q 029579 154 VPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQGG 190 (191)
Q Consensus 154 ~pL~y~~~~~~~~~faSe~~aL~~~~~~~~~--~~ppG~ 190 (191)
|||.|+..+|+.+++|||..+|.....+.++ ++.||.
T Consensus 350 RPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGe 388 (1520)
T 1ofd_A 350 RPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLAPGQ 388 (1520)
T ss_dssp SCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECCTTC
T ss_pred CceEEEEeCCCEEEEEcccccccCcchheeeccCCCCCe
Confidence 9999999866679999999999777777788 999996
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=44.36 E-value=5.7 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=20.1
Q ss_pred ccceeEEEEECCCCEEEEEEcCCCCccEE
Q 029579 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLY 157 (191)
Q Consensus 129 ~G~fa~vi~d~~~~~l~~aRD~~G~~pL~ 157 (191)
+|.|++++.+ .+.++-..++ |++|||
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~ 52 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVV 52 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHH
Confidence 4689999944 4677777665 999998
No 13
>4afx_B Protein Z dependent protease inhibitor; hydrolase inhibitor, serpin, protein Z dependent inhibitor, coagulation; 2.09A {Homo sapiens} PDB: 4aju_B
Probab=26.94 E-value=80 Score=16.94 Aligned_cols=21 Identities=24% Similarity=0.724 Sum_probs=13.2
Q ss_pred cccceeEEEEECCCCE-EEEEE
Q 029579 128 LSGYFAFIVYDKSTST-LFVAS 148 (191)
Q Consensus 128 L~G~fa~vi~d~~~~~-l~~aR 148 (191)
++=+|-|+|+|..++. |+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 4afx_B 8 IDRPFHFMIYEETSGMLLFLGR 29 (36)
T ss_dssp CCSCEEEEEEETTTTEEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 4567888888866554 44444
No 14
>2riv_B Thyroxine-binding globulin; TBG, serpin, cleaved, mutation, glycoprotein, secreted, signaling protein; 1.50A {Homo sapiens} PDB: 2riw_B* 2xn3_B*
Probab=25.80 E-value=90 Score=17.17 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=13.6
Q ss_pred cccceeEEEEECCCCE-EEEEE
Q 029579 128 LSGYFAFIVYDKSTST-LFVAS 148 (191)
Q Consensus 128 L~G~fa~vi~d~~~~~-l~~aR 148 (191)
++=+|-|+|+|..++. |+++|
T Consensus 12 ~drPFlf~I~~~~t~~iLF~G~ 33 (40)
T 2riv_B 12 IDRSFMLLILERSTRSILFLGK 33 (40)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEeCCCCcEEEEEE
Confidence 5667888888876553 44444
No 15
>2xn6_B Thyroxine-binding globulin; transport, cleaved protein; HET: F6Y T44; 1.29A {Homo sapiens} PDB: 2xn5_B* 2xn7_B*
Probab=24.20 E-value=90 Score=16.58 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=12.5
Q ss_pred cccceeEEEEECCCCE-EEEEE
Q 029579 128 LSGYFAFIVYDKSTST-LFVAS 148 (191)
Q Consensus 128 L~G~fa~vi~d~~~~~-l~~aR 148 (191)
.+=+|-|+|+|..++. |+++|
T Consensus 7 ~drPFlf~I~~~~t~~iLF~G~ 28 (35)
T 2xn6_B 7 IDRSFMLLILERSTRSILFLGK 28 (35)
T ss_dssp CCBCEEEEEEETTTTEEEEEEE
T ss_pred ecCCEEEEEEECCCCcEEEEEE
Confidence 4557777787765553 34443
No 16
>1m40_A TEM-1, beta-lactamase TEM; acylation mechanism, ultra- high resolution, hydrolase; HET: CB4; 0.85A {Escherichia coli} SCOP: e.3.1.1 PDB: 1jwp_A* 1nxy_A* 1ny0_A* 1nym_A* 1nyy_A* 1pzo_A* 1erm_A* 1ero_A* 1erq_A* 1s0w_A 1xpb_A 1li0_A 1htz_A 1jtd_A 1esu_A 1jwz_A* 1li9_A 1jwv_A* 1jtg_A 1axb_A* ...
Probab=23.96 E-value=80 Score=24.11 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=32.9
Q ss_pred HHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhh
Q 029579 122 NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (191)
Q Consensus 122 ~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~ 177 (191)
.+.++...|..+++++|..++++++..+ .+..+-.+|-.|.+..
T Consensus 9 ~~~~~~~~~~~~~~v~d~~tG~~l~~~~------------~~~~~~~aS~~K~~ta 52 (263)
T 1m40_A 9 KDAEDQLGARVGYIELDLNSGKILESFR------------PEERFPMMSTFKVLLC 52 (263)
T ss_dssp HHHHHHHTSEEEEEEEETTTCCEEEEES------------TTSCEECGGGHHHHHH
T ss_pred HHHHHhcCCeEEEEEEECCCCCEeeeeC------------CCCccccHHHHHHHHH
Confidence 5667777899999999998887765433 2457888999887654
No 17
>3ndd_B Alpha-1-antitrypsin; serpin, hydrolase inhibitor; 1.50A {Homo sapiens} PDB: 1ezx_B 3ndf_B 7api_B* 8api_B* 9api_B* 2d26_B
Probab=23.88 E-value=86 Score=16.80 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=12.8
Q ss_pred cccceeEEEEECCCC-EEEEEE
Q 029579 128 LSGYFAFIVYDKSTS-TLFVAS 148 (191)
Q Consensus 128 L~G~fa~vi~d~~~~-~l~~aR 148 (191)
++=+|-|+|+|..++ -|+++|
T Consensus 8 ~drPFlf~I~~~~t~~iLF~G~ 29 (36)
T 3ndd_B 8 FNKPFVFLMIEQNTKSPLFMGK 29 (36)
T ss_dssp CCSCEEEEEEETTTCCEEEEEE
T ss_pred eeCCEEEEEEECCCCcEEEEEE
Confidence 455777888876554 344544
No 18
>1n9b_A Penicillinase, beta-lactamase SHV-2; beta-lactam hydrolase, detergent binding, drug design, radiation damage; HET: MA4 EPE; 0.90A {Klebsiella pneumoniae} SCOP: e.3.1.1 PDB: 3d4f_A* 2zd8_A* 1q2p_A* 1shv_A* 1vm1_A* 2g2u_A 2h5s_A* 1ong_A* 3c4o_A 3c4p_A 3mke_A* 3mkf_A* 3mxr_A* 3mxs_A* 3n4i_A 2a3u_A* 3opr_A* 3opl_A* 3oph_A* 3opp_A* ...
Probab=21.80 E-value=93 Score=23.78 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhh
Q 029579 122 NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (191)
Q Consensus 122 ~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~ 177 (191)
.+.++...|..++++.|..++++++..+ .+..+-.+|-.|.+.+
T Consensus 9 ~~~~~~~~~~~~v~v~d~~tg~~l~~~~------------~~~~~~~aS~~K~~~a 52 (265)
T 1n9b_A 9 KLSESQLSGRVGMIEMDLASGRTLTAWR------------ADERFPMMSTFKVVLC 52 (265)
T ss_dssp HHHHHHHTSEEEEEEEETTTCCEEEEES------------TTSCEECGGGHHHHHH
T ss_pred HHHHHhcCCcEEEEEEECCCCcEeeeeC------------CCCeeecHHHHHHHHH
Confidence 5677778899999999988877665432 3457889999987654
No 19
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis} PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A 4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A* 3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A
Probab=21.41 E-value=97 Score=23.68 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=33.3
Q ss_pred hHHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhh
Q 029579 121 PNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (191)
Q Consensus 121 ~~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~ 177 (191)
+.+.++...|..+++++|..+++++ +. +.+..+..||-.|.+.+
T Consensus 8 l~~~~~~~~~~~~v~v~d~~tg~~~-~~------------~~~~~~~~aS~~K~~~a 51 (265)
T 2wk0_A 8 FAKLEEQFDAKLGIFALDTGTNRTV-TY------------RPDERFAFASTIKALTV 51 (265)
T ss_dssp HHHHHHHHTCEEEEEEEETTTCCEE-EE------------STTCEEECGGGHHHHHH
T ss_pred HHHHHHhcCCeEEEEEEECCCCCEE-EE------------CCCCceecHHHHHHHHH
Confidence 3667788889999999999887765 32 23457889999987655
No 20
>2h4p_B MENT, heterochromatin-associated protein MENT; serine protease inhibitor, serpin, hydrolase inhibitor; 1.70A {Gallus gallus} PDB: 2h4q_B
Probab=21.26 E-value=1e+02 Score=16.16 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=9.8
Q ss_pred cccceeEEEEECCCCE
Q 029579 128 LSGYFAFIVYDKSTST 143 (191)
Q Consensus 128 L~G~fa~vi~d~~~~~ 143 (191)
.+=+|-|+|+|..++.
T Consensus 7 ~drPFlf~I~~~~t~~ 22 (34)
T 2h4p_B 7 VDHPFHFFIRHNKSKT 22 (34)
T ss_dssp CCSCEEEEEEETTTTE
T ss_pred ecCCEEEEEEECCCCe
Confidence 3446777777765543
No 21
>2p74_A Beta-lactamase CTX-M-9A; ultra-high resolution, acylation, ESBL, hydrolase; HET: PO4; 0.88A {Escherichia coli} PDB: 3g2y_A* 4dds_A* 4ddy_A* 4de0_A* 4de1_A* 4de2_A* 4de3_A* 1ylj_A* 1yly_A* 1ym1_A* 1yms_A* 1ymx_A* 3g2z_A* 3g30_A* 3g31_A* 3g32_A* 3g34_A* 3g35_A* 1ylt_A* 1ylz_A* ...
Probab=20.91 E-value=1.2e+02 Score=23.00 Aligned_cols=43 Identities=9% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHhhccccceeEEEEECCCCEEEEEEcCCCCccEEEEEeCCCeEEEEechhhHhh
Q 029579 122 NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (191)
Q Consensus 122 ~~~~~~L~G~fa~vi~d~~~~~l~~aRD~~G~~pL~y~~~~~~~~~faSe~~aL~~ 177 (191)
.+.++...|..+++++|..+++++ +.+ .+..+-.+|-.|.+..
T Consensus 10 ~~~~~~~~~~~~~~v~d~~tG~~l-~~~------------~~~~~~~aS~~K~~ta 52 (263)
T 2p74_A 10 AALEKSSGGRLGVALIDTADNTQV-LYR------------GDERFPMCSTSKVMAA 52 (263)
T ss_dssp HHHHHHHTSEEEEEEEETTTTEEE-EES------------TTSCEECGGGGHHHHH
T ss_pred HHHHHhcCCcEEEEEEECCCCCeE-eeC------------CCCccccHHHHHHHHH
Confidence 566777788999999999888876 332 2457889999987654
Done!