Citrus Sinensis ID: 029581

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-
Protein Sequence
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPR
Secondary Structure (PSIPRED)
ccEEEEEccEEcccccccccccEEEEEccccccccccEEcccccEEEEcccccccccccccHHHHcccccccccEEEEcccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHHHHHHHHcccccccccEEEcccccEEEEcccccccccEEEcccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEccccccccccccEEccccccccccHcccccccccccccEcEEEccccccHHHHEEHccccc
Coil and Loop (DISEMBL)
mllavegggffsssasgyskGLTLLFLgqkndddkpmrvspwnqyqlvdqepdpdpdlQLASAAKNRlsrgcasfvcfgrasagpdspshlkvgpaqnqdvspaslgldkrldrsidvedddgnVVKLSLKsslkkpsnsdsvpvqnVIEHEHDLLsekgndiaghterrkvqwtDTCGSELAeirefepr
Flexible Loop (DISEMBL)
mllavegggffsssasgysKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDrsidvedddgnVVKLSlksslkkpsnsdsvpvqNVIEHEHDLlsekgndiaghterrkvqwtdtcgselaeirefepr
Low Complexity Region (SEG)
MLLAVEgggffsssasgyskgLTLLFLGQKNDDDKPMRVSPWNQYqlvdqepdpdpdlqlASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNvvklslksslkkpsnsdsvPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPR
Disordered region (IsUnstruct)
*****************YSKGLTLLFLG*****************************************RGCASFVCFG**********************************************************************************************WT****************
Disordered Region (DISOPRED)
*LLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPD****************CASFVCFGRAS*****************************************************************************************VQWTDTCGSELAEIREFE**
Disordered Region (DISEMBL)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLK************PVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPR
Disordered Region (DISPRO)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASA*******************************SIDVE*DDGNVVKLSLKSS*********************************TERRKVQWTDTCGSELAEIREF***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEPR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
255566690	206	conserved hypothetical protein [Ricinus	0.958	0.888	0.731	4e-68
224085173	201	predicted protein [Populus trichocarpa]	0.963	0.915	0.722	6e-66
224062860	189	predicted protein [Populus trichocarpa]	0.958	0.968	0.696	2e-61
255632340	209	unknown [Glycine max]	0.947	0.866	0.647	6e-57
359493155	205	PREDICTED: uncharacterized protein LOC10	0.952	0.887	0.678	8e-53
357443561	206	hypothetical protein MTR_1g098260 [Medic	0.910	0.844	0.592	4e-49
2505872	196	hypothetical protein [Arabidopsis thalia	0.979	0.954	0.570	2e-47
18395162	216	uncharacterized protein [Arabidopsis tha	0.973	0.861	0.568	1e-46
297845306	214	hypothetical protein ARALYDRAFT_889791 [	0.963	0.859	0.558	3e-45
3287680	265	T22J18.4 [Arabidopsis thaliana]	0.921	0.664	0.518	1e-37

>gi|255566690|ref|XP_002524329.1| conserved hypothetical protein [Ricinus communis] gi|223536420|gb|EEF38069.1| conserved hypothetical protein [Ricinus communis]

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 139/190 (73%), Positives = 157/190 (82%), Gaps = 7/190 (3%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQ+++D KPMRV+PWNQYQLV+ EPDPD  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQRHED-KPMRVAPWNQYQLVENEPDPD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG DSPS LKVGPAQ QDV P  L  DK  D + ++E 
Sbjct: 58  ASL-KNRLSRGCASFVCFGRASAGLDSPSPLKVGPAQQQDVLPDPLVADKDKDNTTELEG 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+ NV ++ LKSSLKKP+NS  VPV+N   ++H+ L EKG++I GH ERRKVQWTD CGS
Sbjct: 117 DN-NVRRVMLKSSLKKPTNSIPVPVENA--NQHNTLGEKGSNIPGHAERRKVQWTDVCGS 173

Query: 181 ELAEIREFEP 190
           ELAEIREFEP
Sbjct: 174 ELAEIREFEP 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085173|ref|XP_002307512.1| predicted protein [Populus trichocarpa] gi|222856961|gb|EEE94508.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 138/191 (72%), Positives = 157/191 (82%), Gaps = 7/191 (3%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQK++D KPMRV+PWNQYQLVDQEPD D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHED-KPMRVTPWNQYQLVDQEPDFD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG +SPS LKVGPAQ +DV P  L  DK  D + ++E 
Sbjct: 58  ASL-KNRLSRGCASFVCFGRASAGLESPSPLKVGPAQQKDVLPDPLVADKGKDLTTELEG 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+ N +K++L+SSLKK S S  VPV++  + E   L++KG+DI GHTERRKVQWTD CGS
Sbjct: 117 DN-NAIKVTLRSSLKKTSKSIPVPVEDANQSEP--LNDKGSDIPGHTERRKVQWTDVCGS 173

Query: 181 ELAEIREFEPR 191
           ELAEIREFEPR
Sbjct: 174 ELAEIREFEPR 184

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062860|ref|XP_002300906.1| predicted protein [Populus trichocarpa] gi|222842632|gb|EEE80179.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 133/191 (69%), Positives = 152/191 (79%), Gaps = 8/191 (4%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGYSKGLTLL LGQK++D KPMRV+PWNQYQLVDQEPD D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYSKGLTLLLLGQKHED-KPMRVTPWNQYQLVDQEPDSD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLS GCASF+CFGRASA  +SPS LKVGPAQ QDV P  L  D+  D + ++E 
Sbjct: 58  ASL-KNRLSHGCASFICFGRASAH-ESPSPLKVGPAQQQDVLPDPLVADREKDLTTELEV 115

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           D+    K++LKS+LKK S    VPV++V + E   L+ +G+DI GHTERRKVQWTD CGS
Sbjct: 116 DN-YARKITLKSNLKKASKRIPVPVEDVKQSEP--LNGQGSDIPGHTERRKVQWTDVCGS 172

Query: 181 ELAEIREFEPR 191
           ELAEIREFEPR
Sbjct: 173 ELAEIREFEPR 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255632340|gb|ACU16528.1| unknown [Glycine max]

 Score =  225 bits (574), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 125/193 (64%), Positives = 144/193 (74%), Gaps = 12/193 (6%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGY+KGL+LL LGQ+N+D KPMRV+PWNQYQLVDQE DP+  LQL
Sbjct: 1   MLLAVEGGGLFSASASGYTKGLSLLLLGQRNED-KPMRVAPWNQYQLVDQESDPE--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGR SAG D+PS  KVGPAQ  DVSP +L  +K  D S  V+D
Sbjct: 58  AST-KNRLSRGCASFVCFGRTSAGLDTPSPPKVGPAQQHDVSPGTLVSNKGKDPSAHVDD 116

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDI---AGHTERRKVQWTDT 177
           +  N  K++LKSS+KKP  S  +PV+   EHE    +  G  I    G  ER+KVQWTD 
Sbjct: 117 ESDN-RKVTLKSSIKKPQISKPIPVEAANEHE----ASGGQGICTPGGQPERKKVQWTDN 171

Query: 178 CGSELAEIREFEP 190
           CGSEL EIREFEP
Sbjct: 172 CGSELVEIREFEP 184

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493155|ref|XP_003634525.1| PREDICTED: uncharacterized protein LOC100854917 [Vitis vinifera] gi|296081214|emb|CBI18240.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 129/190 (67%), Positives = 141/190 (74%), Gaps = 8/190 (4%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGGFFSSSASGY+KGLTLL LGQKN++ KPMRVSPWNQYQLVDQE D D  LQL
Sbjct: 1   MLLAVEGGGFFSSSASGYTKGLTLLLLGQKNEE-KPMRVSPWNQYQLVDQESDTD--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVED 120
           AS  KNRLSRGCASFVCFGRASAG + PS LKVGP Q QD  P     DK  D + D   
Sbjct: 58  ASG-KNRLSRGCASFVCFGRASAGLEVPSPLKVGPVQQQDGLPGPPISDKGKDHTTD-HG 115

Query: 121 DDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTCGS 180
           DD N   + LKSSLKKP N  S+PV    ++E + L E  +DI G TERRKVQWTD CG 
Sbjct: 116 DDNNERDVPLKSSLKKPFN--SIPVSGG-DNECEPLGETCSDIPGCTERRKVQWTDACGR 172

Query: 181 ELAEIREFEP 190
           EL EI+EFEP
Sbjct: 173 ELVEIKEFEP 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443561|ref|XP_003592058.1| hypothetical protein MTR_1g098260 [Medicago truncatula] gi|355481106|gb|AES62309.1| hypothetical protein MTR_1g098260 [Medicago truncatula]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 118/199 (59%), Positives = 139/199 (69%), Gaps = 25/199 (12%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           ML AVEGGGFFS+SASGYSKGL+LL LGQ+N+D KPMRV+PWN YQLV QE DP   LQL
Sbjct: 1   MLFAVEGGGFFSASASGYSKGLSLLLLGQRNED-KPMRVAPWNHYQLVVQESDPQ--LQL 57

Query: 61  ASAAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSPASLGLDKRLDRSIDVE- 119
           A   KNRLSRGCASFVCFGR SAGPD+PS LKVGP Q  DVSP       RL  S D + 
Sbjct: 58  A-PTKNRLSRGCASFVCFGRTSAGPDTPSPLKVGPTQQHDVSP-------RLPVSNDGKD 109

Query: 120 ----DDDGNVVKLSLKSSLKKPSNSDSVPVQNVIEHE----HDLLSEKGNDIAGHTERRK 171
               DD+ + +K++LKSS+++P ++ SV V+   E E    H + +          ERR+
Sbjct: 110 PSHIDDNNDGIKVTLKSSIRRPHSNKSVSVEATNEQEASGGHVVFTP-----GDQAERRR 164

Query: 172 VQWTDTCGSELAEIREFEP 190
           VQWTD CGSEL EIREFEP
Sbjct: 165 VQWTDACGSELVEIREFEP 183

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2505872|emb|CAA72910.1| hypothetical protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/198 (57%), Positives = 139/198 (70%), Gaps = 11/198 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQEP+ DP LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query: 61  ASAAKNRLSRGC-ASFVCFGRASAGPDSPSHLKVGPAQNQ--DVSPASLGLDKRLDRSID 117
            S  KNR+SRGC ASF CFG ASAG ++PS LKV P Q Q  ++S     +         
Sbjct: 60  DS-IKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query: 118 V-EDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
           + E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   LS  G+D+ G   RRKVQ
Sbjct: 119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYE--TLSVDGSDLTGDMARRKVQ 176

Query: 174 WTDTCGSELAEIREFEPR 191
           W D CGSEL ++REFEPR
Sbjct: 177 WPDACGSELTQVREFEPR 194

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395162|ref|NP_564181.1| uncharacterized protein [Arabidopsis thaliana] gi|79318389|ref|NP_001031081.1| uncharacterized protein [Arabidopsis thaliana] gi|21618018|gb|AAM67068.1| unknown [Arabidopsis thaliana] gi|27754683|gb|AAO22785.1| unknown protein [Arabidopsis thaliana] gi|28394087|gb|AAO42451.1| unknown protein [Arabidopsis thaliana] gi|332192167|gb|AEE30288.1| uncharacterized protein [Arabidopsis thaliana] gi|332192168|gb|AEE30289.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/197 (56%), Positives = 138/197 (70%), Gaps = 11/197 (5%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQEP+ DP LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query: 61  ASAAKNRLSRGC-ASFVCFGRASAGPDSPSHLKVGPAQNQ--DVSPASLGLDKRLDRSID 117
            S  KNR+SRGC ASF CFG ASAG ++PS LKV P Q Q  ++S     +         
Sbjct: 60  DS-IKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query: 118 V-EDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
           + E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   LS  G+D+ G   RRKVQ
Sbjct: 119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYE--TLSVDGSDLTGDMARRKVQ 176

Query: 174 WTDTCGSELAEIREFEP 190
           W D CGSEL ++REFEP
Sbjct: 177 WPDACGSELTQVREFEP 193

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845306|ref|XP_002890534.1| hypothetical protein ARALYDRAFT_889791 [Arabidopsis lyrata subsp. lyrata] gi|297336376|gb|EFH66793.1| hypothetical protein ARALYDRAFT_889791 [Arabidopsis lyrata subsp. lyrata]

 Score =  186 bits (473), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 110/197 (55%), Positives = 139/197 (70%), Gaps = 13/197 (6%)

Query: 1   MLLAVEGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQL 60
           MLLAVEGGG FS+SASGYSKGLTLLF G K D D+PMRV PWN YQ+VDQE   DP LQL
Sbjct: 1   MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DGDRPMRVVPWNHYQVVDQE--ADPVLQL 57

Query: 61  ASAAKNRLSRGC-ASFVCFGRASAGPDSPSHLKVGPA-QNQDVSPASLGLDKRLDRSID- 117
            S  KNR+SRGC ASF CFG ASAG ++PS LKV P  Q++++S     +    ++  D 
Sbjct: 58  DS-IKNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQHREISSPESAVVVVSEKGKDQ 116

Query: 118 -VEDDDGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQ 173
             E D+G+     KLSL+SSLK+PS ++S  ++++ E+E   L+  G+D+ G   RRKVQ
Sbjct: 117 ITEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYET--LTVDGSDLTGDMARRKVQ 174

Query: 174 WTDTCGSELAEIREFEP 190
           W D CGSEL ++REFEP
Sbjct: 175 WPDACGSELTQVREFEP 191

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3287680|gb|AAC25508.1|AAC25508 T22J18.4 [Arabidopsis thaliana]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/193 (51%), Positives = 125/193 (64%), Gaps = 17/193 (8%)

Query: 6   EGGGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVDQEPDPDPDLQLASAAK 65
           EG G  S       KGLTLLF G K D D+PMRV PWN YQ+VDQEP+ DP LQL S  K
Sbjct: 81  EGRGILSG------KGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQLDS-IK 132

Query: 66  NRLSRGC-ASFVCFGRASAGPDSPSHLKVGPAQNQ--DVSPASLGLDKRLDRSIDV-EDD 121
           NR+SRGC ASF CFG ASAG ++PS LKV P Q Q  ++S     +         + E D
Sbjct: 133 NRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQISEAD 192

Query: 122 DGN---VVKLSLKSSLKKPSNSDSVPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTDTC 178
           +G+     KLSL+SSLK+PS ++S  ++++ E+E   LS  G+D+ G   RRKVQW D C
Sbjct: 193 NGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYET--LSVDGSDLTGDMARRKVQWPDAC 250

Query: 179 GSELAEIREFEPR 191
           GSEL ++REFEPR
Sbjct: 251 GSELTQVREFEPR 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	191
TAIR|locus:2199660	216	AT1G22790 "AT1G22790" [Arabido	0.984	0.870	0.4	2.8e-27
TAIR|locus:2009081	182	AT1G34010 "AT1G34010" [Arabido	0.183	0.192	0.594	7e-18
TAIR|locus:1006230777	120	AT1G55475 "AT1G55475" [Arabido	0.120	0.191	0.739	6.3e-05

TAIR|locus:2199660 AT1G22790 "AT1G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 78/195 (40%), Positives = 99/195 (50%)

Query:     1 MLLAVEXXXXXXXXXXXXXXXLTLLFLGQKNDDDKPMRVSPWNQYXXXXXXXXXXXXXXX 60
             MLLAVE               LTLLF G K D D+PMRV PWN Y               
Sbjct:     1 MLLAVEGGGLFSASASGYSKGLTLLFSGDK-DVDRPMRVVPWNHYQVVDQEPEADPVLQL 59

Query:    61 ASAAKNRLSRGCA-SFVCFGRASAGPDSPSHLKVGPAQNQ--DVS-PASLGLDKRLDRSI 116
              S  KNR+SRGCA SF CFG ASAG ++PS LKV P Q Q  ++S P S+ +     +  
Sbjct:    60 DSI-KNRVSRGCAASFSCFGGASAGLETPSPLKVEPVQQQHREISSPESVVVVSEKGKDQ 118

Query:   117 DVEDDDGNXXXXXXXXXXXXXXXXXXXPVQNVIE-HEHDLLSEKGNDIAGHTERRKVQWT 175
               E D+G+                     +++ +  E++ LS  G+D+ G   RRKVQW 
Sbjct:   119 ISEADNGSSKEAFKLSLRSSLKRPSVAESRSLEDIKEYETLSVDGSDLTGDMARRKVQWP 178

Query:   176 DTCGSELAEIREFEP 190
             D CGSEL ++REFEP
Sbjct:   179 DACGSELTQVREFEP 193

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2009081 AT1G34010 "AT1G34010" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
 Identities = 22/37 (59%), Positives = 27/37 (72%)

Query:   154 DLLSEKGNDIAGHTERRKVQWTDTCGSELAEIREFEP 190
             D +S  G  +  H +RRKVQW DTCG E+AE+REFEP
Sbjct:   125 DDVSRDG--VVDHIDRRKVQWPDTCGIEIAEVREFEP 159

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:1006230777 AT1G55475 "AT1G55475" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 17/23 (73%), Positives = 19/23 (82%)

Query:   168 ERRKVQWTDTCGSELAEIREFEP 190
             E++KVQW D  G ELAEIREFEP
Sbjct:    79 EKKKVQWVDVIGKELAEIREFEP 101


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.133   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       142   0.00091  102 3  11 23  0.36    32
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  146 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  10.96u 0.11s 11.07t   Elapsed:  00:00:00
  Total cpu time:  10.97u 0.12s 11.09t   Elapsed:  00:00:01
  Start:  Sat May 11 03:16:50 2013   End:  Sat May 11 03:16:51 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V001134 hypothetical protein (201 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00