BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029582
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
          Length = 101

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 41/73 (56%)

Query: 14 TGHSTALYCLCKQGLSQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHCNYAVNSY 73
          T  +   +C+ K G+S   L   I+YAC  G DC PI   G C+ PNTV+ H  Y +N Y
Sbjct: 6  TPKAAGSWCVPKPGVSDDQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLY 65

Query: 74 FQRKGQTPGSCDF 86
          +Q  G+   +CDF
Sbjct: 66 YQHAGRNSWNCDF 78


>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
 pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
          Length = 294

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 9   LFMAMTGHSTALYCLCKQGL-SQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDHC- 66
           L++  T   TA Y     GL  Q   Q+ +D ACG G D   +++ G         D   
Sbjct: 32  LYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLVEEGFSVTSVDASDKML 91

Query: 67  NYAVNSYFQRKGQ 79
            YA+   + R+ +
Sbjct: 92  KYALKERWNRRHE 104


>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
           N-Methyltransferase
 pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
           N-Methyltransferase
          Length = 295

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 9   LFMAMTGHSTALYCLCKQGL-SQSVLQKAIDYACGAGADCTPILQNGVCWNPNTVQDH-C 66
           L++  T   TA Y     GL  Q   Q+ +D ACG G D   +++ G         D   
Sbjct: 33  LYIGDTRSRTAEYKAWLLGLLRQHGCQRVLDVACGTGVDSIMLVEEGFSVTSVDASDKML 92

Query: 67  NYAVNSYFQRKGQ 79
            YA+   + R+ +
Sbjct: 93  KYALKERWNRRHE 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,347,881
Number of Sequences: 62578
Number of extensions: 95078
Number of successful extensions: 320
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 3
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)