Query 029583
Match_columns 191
No_of_seqs 221 out of 1703
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 15:14:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 3.9E-25 8.4E-30 192.5 6.9 70 47-116 2-73 (371)
2 KOG0713 Molecular chaperone (D 99.9 7.8E-23 1.7E-27 174.6 6.8 70 45-114 12-83 (336)
3 KOG0712 Molecular chaperone (D 99.8 2.6E-21 5.7E-26 166.6 6.5 68 47-115 2-69 (337)
4 PRK14288 chaperone protein Dna 99.8 3E-20 6.4E-25 163.7 6.4 66 48-113 2-69 (369)
5 PRK14296 chaperone protein Dna 99.8 4E-20 8.6E-25 163.0 6.8 66 48-113 3-69 (372)
6 PTZ00037 DnaJ_C chaperone prot 99.8 4.5E-20 9.8E-25 164.8 5.5 66 46-113 25-90 (421)
7 PRK14286 chaperone protein Dna 99.8 1.7E-19 3.7E-24 159.0 7.9 66 48-113 3-70 (372)
8 PRK14279 chaperone protein Dna 99.8 1.9E-19 4.2E-24 159.6 7.2 66 48-113 8-75 (392)
9 PRK14282 chaperone protein Dna 99.8 5.9E-19 1.3E-23 155.5 7.0 66 48-113 3-71 (369)
10 PRK14287 chaperone protein Dna 99.8 6E-19 1.3E-23 155.5 6.7 66 48-113 3-69 (371)
11 PRK14276 chaperone protein Dna 99.8 9.7E-19 2.1E-23 154.6 6.9 66 48-113 3-69 (380)
12 PRK14291 chaperone protein Dna 99.8 1.6E-18 3.5E-23 153.3 8.1 66 48-113 2-68 (382)
13 PF00226 DnaJ: DnaJ domain; I 99.8 9E-19 1.9E-23 117.1 4.9 61 50-110 1-64 (64)
14 PRK14299 chaperone protein Dna 99.8 1.1E-18 2.4E-23 149.3 6.7 67 48-114 3-70 (291)
15 PRK14283 chaperone protein Dna 99.8 1.2E-18 2.5E-23 154.0 6.9 67 47-113 3-70 (378)
16 PRK14298 chaperone protein Dna 99.8 1.2E-18 2.7E-23 153.8 6.7 66 48-113 4-70 (377)
17 PRK14280 chaperone protein Dna 99.7 1.8E-18 4E-23 152.7 6.9 66 48-113 3-69 (376)
18 PRK14285 chaperone protein Dna 99.7 1.8E-18 4E-23 152.1 6.7 65 49-113 3-69 (365)
19 PRK14277 chaperone protein Dna 99.7 1.7E-18 3.7E-23 153.3 6.6 66 48-113 4-71 (386)
20 PRK14294 chaperone protein Dna 99.7 1.7E-18 3.7E-23 152.4 6.4 67 47-113 2-70 (366)
21 KOG0716 Molecular chaperone (D 99.7 2.7E-18 6E-23 142.9 7.3 67 48-114 30-98 (279)
22 PRK14297 chaperone protein Dna 99.7 1.7E-18 3.7E-23 153.1 6.3 66 48-113 3-70 (380)
23 PRK14295 chaperone protein Dna 99.7 2.4E-18 5.3E-23 152.5 6.7 64 48-111 8-73 (389)
24 PRK14301 chaperone protein Dna 99.7 2.3E-18 5.1E-23 151.8 6.4 66 48-113 3-70 (373)
25 PRK14278 chaperone protein Dna 99.7 2.3E-18 5E-23 152.1 6.2 65 49-113 3-68 (378)
26 KOG0715 Molecular chaperone (D 99.7 4.1E-18 9E-23 145.5 7.3 70 46-115 40-110 (288)
27 PRK10767 chaperone protein Dna 99.7 4E-18 8.7E-23 150.2 6.5 66 48-113 3-70 (371)
28 PRK14284 chaperone protein Dna 99.7 4.2E-18 9.1E-23 151.1 6.1 65 49-113 1-67 (391)
29 PRK14281 chaperone protein Dna 99.7 6.6E-18 1.4E-22 150.1 6.2 65 49-113 3-69 (397)
30 KOG0717 Molecular chaperone (D 99.7 1.3E-17 2.9E-22 147.1 5.8 70 45-114 4-76 (508)
31 PRK10266 curved DNA-binding pr 99.7 2.1E-17 4.6E-22 142.3 6.8 66 48-113 3-69 (306)
32 PRK14300 chaperone protein Dna 99.7 2E-17 4.3E-22 145.9 6.5 65 49-113 3-68 (372)
33 TIGR02349 DnaJ_bact chaperone 99.7 2.2E-17 4.8E-22 144.6 6.5 64 50-113 1-65 (354)
34 PRK14290 chaperone protein Dna 99.7 2.1E-17 4.6E-22 145.4 6.4 65 49-113 3-70 (365)
35 PRK14289 chaperone protein Dna 99.7 2.5E-17 5.4E-22 145.9 6.7 66 48-113 4-71 (386)
36 PRK14292 chaperone protein Dna 99.7 3.2E-17 7E-22 144.5 6.8 65 49-113 2-67 (371)
37 KOG0691 Molecular chaperone (D 99.7 3.2E-17 7E-22 139.8 5.8 69 48-116 4-74 (296)
38 PRK14293 chaperone protein Dna 99.7 4.3E-17 9.3E-22 143.9 6.7 65 49-113 3-68 (374)
39 smart00271 DnaJ DnaJ molecular 99.7 1.4E-16 2.9E-21 104.9 6.8 57 49-105 1-60 (60)
40 KOG0718 Molecular chaperone (D 99.7 9.4E-17 2E-21 142.0 5.8 68 47-114 7-79 (546)
41 cd06257 DnaJ DnaJ domain or J- 99.7 2.3E-16 5.1E-21 101.9 6.0 53 50-102 1-55 (55)
42 PTZ00341 Ring-infected erythro 99.7 1.6E-16 3.5E-21 150.8 7.2 68 46-113 570-638 (1136)
43 KOG0721 Molecular chaperone (D 99.6 7.4E-16 1.6E-20 124.8 6.8 73 44-116 94-168 (230)
44 KOG0719 Molecular chaperone (D 99.6 6.3E-16 1.4E-20 126.4 4.9 66 48-113 13-82 (264)
45 PHA03102 Small T antigen; Revi 99.6 1.3E-15 2.8E-20 118.8 5.2 66 48-115 4-71 (153)
46 KOG0624 dsRNA-activated protei 99.6 2.9E-15 6.4E-20 129.3 6.4 71 46-116 391-466 (504)
47 COG2214 CbpA DnaJ-class molecu 99.6 3.2E-15 6.9E-20 119.6 6.2 66 47-112 4-72 (237)
48 TIGR03835 termin_org_DnaJ term 99.6 2.6E-15 5.6E-20 139.9 5.2 65 49-113 2-67 (871)
49 PRK05014 hscB co-chaperone Hsc 99.5 9.9E-15 2.1E-19 116.1 6.9 66 49-114 1-75 (171)
50 PRK01356 hscB co-chaperone Hsc 99.5 1.2E-14 2.7E-19 115.0 6.1 66 49-114 2-74 (166)
51 PRK00294 hscB co-chaperone Hsc 99.5 3.5E-14 7.6E-19 113.0 7.1 68 47-114 2-78 (173)
52 PRK03578 hscB co-chaperone Hsc 99.5 5.9E-14 1.3E-18 112.1 7.2 67 48-114 5-80 (176)
53 PTZ00100 DnaJ chaperone protei 99.5 1.3E-13 2.8E-18 102.6 6.0 59 41-101 57-115 (116)
54 KOG0720 Molecular chaperone (D 99.4 1.8E-13 4E-18 121.1 5.0 71 46-116 232-303 (490)
55 KOG0722 Molecular chaperone (D 99.4 2.7E-13 5.9E-18 112.4 2.7 71 48-118 32-103 (329)
56 KOG0714 Molecular chaperone (D 99.3 1.3E-12 2.9E-17 109.1 4.0 67 48-114 2-71 (306)
57 PRK09430 djlA Dna-J like membr 99.3 3.2E-12 6.9E-17 108.3 6.0 57 46-102 197-262 (267)
58 KOG0550 Molecular chaperone (D 99.3 1.7E-12 3.8E-17 114.1 4.2 67 46-112 370-439 (486)
59 PRK01773 hscB co-chaperone Hsc 99.3 5.7E-12 1.2E-16 100.4 6.4 66 49-114 2-76 (173)
60 PHA02624 large T antigen; Prov 99.3 4E-12 8.7E-17 117.2 5.1 60 48-109 10-71 (647)
61 COG5407 SEC63 Preprotein trans 99.1 4.9E-11 1.1E-15 105.8 4.2 132 47-182 96-235 (610)
62 TIGR00714 hscB Fe-S protein as 99.1 2.5E-10 5.4E-15 89.7 6.1 54 61-114 3-63 (157)
63 COG5269 ZUO1 Ribosome-associat 99.0 1E-10 2.3E-15 98.0 1.0 98 47-144 41-145 (379)
64 KOG1150 Predicted molecular ch 99.0 6.1E-10 1.3E-14 89.7 4.7 65 47-111 51-118 (250)
65 KOG0723 Molecular chaperone (D 98.6 5.8E-08 1.3E-12 70.7 5.5 67 36-104 43-109 (112)
66 KOG1789 Endocytosis protein RM 98.3 6.5E-07 1.4E-11 86.6 5.7 57 44-101 1276-1336(2235)
67 KOG0568 Molecular chaperone (D 98.3 6.2E-07 1.4E-11 74.1 4.8 55 48-102 46-102 (342)
68 KOG3192 Mitochondrial J-type c 97.9 7.9E-06 1.7E-10 63.6 3.5 69 46-114 5-82 (168)
69 COG1076 DjlA DnaJ-domain-conta 96.6 0.0013 2.7E-08 52.4 2.2 52 49-100 113-173 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.5 0.0012 2.6E-08 52.5 1.6 65 50-114 2-75 (174)
71 PF03656 Pam16: Pam16; InterP 96.4 0.0072 1.6E-07 45.9 5.4 58 45-104 54-111 (127)
72 KOG0431 Auxilin-like protein a 96.4 0.0047 1E-07 56.2 4.6 27 59-85 398-424 (453)
73 PF11833 DUF3353: Protein of u 90.6 0.62 1.4E-05 37.8 5.3 38 58-101 1-38 (194)
74 PF13446 RPT: A repeated domai 88.9 1.1 2.4E-05 29.2 4.7 27 49-75 5-31 (62)
75 KOG0724 Zuotin and related mol 82.7 1.7 3.8E-05 37.6 4.1 52 61-112 4-61 (335)
76 PF14687 DUF4460: Domain of un 80.9 4.4 9.5E-05 30.0 5.1 45 60-104 5-55 (112)
77 KOG3442 Uncharacterized conser 62.4 16 0.00034 27.7 4.2 52 48-101 58-109 (132)
78 PF10041 DUF2277: Uncharacteri 59.5 56 0.0012 22.6 6.2 54 49-102 3-61 (78)
79 cd03004 PDI_a_ERdj5_C PDIa fam 55.0 2.2 4.8E-05 29.9 -1.3 40 139-182 21-60 (104)
80 PF12797 Fer4_2: 4Fe-4S bindin 52.4 8.7 0.00019 20.2 1.0 15 141-155 2-16 (22)
81 COG2879 Uncharacterized small 51.7 32 0.00069 22.9 3.8 28 69-96 27-54 (65)
82 COG5552 Uncharacterized conser 51.0 74 0.0016 22.0 5.7 34 49-82 3-36 (88)
83 cd03003 PDI_a_ERdj5_N PDIa fam 50.7 3 6.4E-05 29.2 -1.3 41 138-182 19-59 (101)
84 cd03006 PDI_a_EFP1_N PDIa fami 46.0 3.6 7.7E-05 30.2 -1.5 41 138-182 30-70 (113)
85 cd02994 PDI_a_TMX PDIa family, 40.7 5.8 0.00013 27.5 -1.0 37 141-181 20-57 (101)
86 cd02963 TRX_DnaJ TRX domain, D 40.5 5.4 0.00012 28.7 -1.2 41 137-181 24-65 (111)
87 PF07709 SRR: Seven Residue Re 36.7 24 0.00053 16.1 1.1 12 90-101 3-14 (14)
88 cd02956 ybbN ybbN protein fami 35.2 7.5 0.00016 26.6 -1.2 38 139-180 14-51 (96)
89 cd02961 PDI_a_family Protein D 33.8 8.6 0.00019 25.7 -1.0 40 139-182 17-58 (101)
90 cd03002 PDI_a_MPD1_like PDI fa 32.3 10 0.00022 26.5 -0.9 38 139-180 20-57 (109)
91 PF00085 Thioredoxin: Thioredo 31.7 6.5 0.00014 26.9 -2.0 40 138-181 18-57 (103)
92 PRK09381 trxA thioredoxin; Pro 31.0 9.8 0.00021 26.8 -1.2 39 139-181 23-61 (109)
93 cd02995 PDI_a_PDI_a'_C PDIa fa 30.6 10 0.00022 26.0 -1.1 40 138-181 19-60 (104)
94 PF15178 TOM_sub5: Mitochondri 29.6 89 0.0019 19.6 3.1 23 52-74 2-24 (51)
95 cd03005 PDI_a_ERp46 PDIa famil 29.1 10 0.00022 26.0 -1.4 38 140-181 19-59 (102)
96 PF12434 Malate_DH: Malate deh 27.6 74 0.0016 17.6 2.2 17 63-79 10-26 (28)
97 PF03858 Crust_neuro_H: Crusta 26.5 36 0.00078 20.6 1.0 15 174-188 4-18 (41)
98 cd01388 SOX-TCF_HMG-box SOX-TC 25.6 1.1E+02 0.0024 20.0 3.4 41 68-111 14-54 (72)
99 PF04328 DUF466: Protein of un 25.4 1.6E+02 0.0034 19.5 4.0 27 68-94 26-52 (65)
100 TIGR01126 pdi_dom protein disu 25.2 16 0.00034 24.8 -0.9 39 139-181 15-55 (102)
101 PTZ00443 Thioredoxin domain-co 24.9 15 0.00032 30.4 -1.2 40 138-181 53-92 (224)
102 PF08447 PAS_3: PAS fold; Int 23.1 24 0.00052 23.3 -0.3 30 49-82 6-36 (91)
103 PF01383 CpcD: CpcD/allophycoc 23.1 39 0.00085 21.7 0.7 18 174-191 31-48 (56)
104 cd00084 HMG-box High Mobility 22.0 1.5E+02 0.0033 18.2 3.4 42 66-110 11-52 (66)
105 PF12725 DUF3810: Protein of u 21.7 2E+02 0.0044 24.9 5.1 62 48-109 81-155 (318)
106 cd01390 HMGB-UBF_HMG-box HMGB- 21.6 1.6E+02 0.0035 18.3 3.5 39 69-110 14-52 (66)
107 cd02950 TxlA TRX-like protein 21.4 17 0.00036 27.5 -1.5 26 139-168 22-47 (142)
108 cd02954 DIM1 Dim1 family; Dim1 21.1 17 0.00038 26.8 -1.4 39 139-181 16-54 (114)
109 COG0089 RplW Ribosomal protein 20.7 76 0.0017 22.8 1.9 21 54-74 25-45 (94)
110 cd03001 PDI_a_P5 PDIa family, 20.4 19 0.00041 24.6 -1.3 38 139-180 20-57 (103)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.9e-25 Score=192.54 Aligned_cols=70 Identities=47% Similarity=0.684 Sum_probs=64.9
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C-chHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAG-Q-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~-~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
..+|||+||||+++||.+|||+|||+|+++||||+|+ + .++++|++|++||+||+||++|+.||++....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccc
Confidence 4689999999999999999999999999999999999 3 68999999999999999999999999975443
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.8e-23 Score=174.65 Aligned_cols=70 Identities=44% Similarity=0.648 Sum_probs=64.9
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
....+|||+||||+++|+..|||+|||||++++|||||++ .+.+.|+.|+.||+||+||++|+.||.++.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 3457899999999999999999999999999999999996 468999999999999999999999999753
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.6e-21 Score=166.63 Aligned_cols=68 Identities=41% Similarity=0.609 Sum_probs=63.4
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
..+.||+||||+++|+.+|||+|||+|+++||||||++ +.++|++|++||++|+||++|+.||++...
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-~~ekfkei~~AyevLsd~ekr~~yD~~g~~ 69 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-AGEKFKEISQAYEVLSDPEKREIYDQYGEE 69 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence 35789999999999999999999999999999999986 789999999999999999999999997543
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3e-20 Score=163.67 Aligned_cols=66 Identities=42% Similarity=0.609 Sum_probs=61.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++||.+|||+|||+|+++||||+++. .++++|++|++||+||+||++|+.||++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G 69 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYG 69 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 3799999999999999999999999999999999973 46789999999999999999999999964
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=4e-20 Score=163.02 Aligned_cols=66 Identities=52% Similarity=0.809 Sum_probs=62.0
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|||+||||+++|+.+|||+|||+|+++||||++++ .++++|++|++||+||+||++|+.||++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 4799999999999999999999999999999999974 46789999999999999999999999964
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.80 E-value=4.5e-20 Score=164.78 Aligned_cols=66 Identities=39% Similarity=0.544 Sum_probs=61.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
+...|||+||||+++||.+|||+|||+|+++||||+++ +.++|++|++||++|+||.+|+.||++.
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~--~~e~F~~i~~AYevLsD~~kR~~YD~~G 90 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--DPEKFKEISRAYEVLSDPEKRKIYDEYG 90 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHHHhccHHHHHHHhhhc
Confidence 34679999999999999999999999999999999986 3589999999999999999999999964
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.7e-19 Score=159.04 Aligned_cols=66 Identities=44% Similarity=0.659 Sum_probs=61.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||+||+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 4799999999999999999999999999999999973 46789999999999999999999999964
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.9e-19 Score=159.63 Aligned_cols=66 Identities=41% Similarity=0.626 Sum_probs=61.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||++|+.||++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 4799999999999999999999999999999999974 46799999999999999999999999963
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.9e-19 Score=155.45 Aligned_cols=66 Identities=42% Similarity=0.641 Sum_probs=61.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g 71 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG 71 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence 5799999999999999999999999999999999874 35789999999999999999999999864
No 10
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6e-19 Score=155.48 Aligned_cols=66 Identities=39% Similarity=0.665 Sum_probs=61.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G 69 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFG 69 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhC
Confidence 4699999999999999999999999999999999974 46789999999999999999999999964
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.7e-19 Score=154.62 Aligned_cols=66 Identities=45% Similarity=0.675 Sum_probs=61.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+|+++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 69 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYG 69 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcC
Confidence 4799999999999999999999999999999999975 46789999999999999999999999964
No 12
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1.6e-18 Score=153.32 Aligned_cols=66 Identities=50% Similarity=0.756 Sum_probs=61.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|||+||||+++|+.++||+|||+++++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g 68 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFG 68 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhc
Confidence 4799999999999999999999999999999999975 46789999999999999999999999864
No 13
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=9e-19 Score=117.12 Aligned_cols=61 Identities=44% Similarity=0.769 Sum_probs=57.3
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhh
Q 029583 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYD 110 (191)
Q Consensus 50 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD 110 (191)
|||+||||+++++.++||++|+++++++|||+++.. +++.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999999999998653 4789999999999999999999998
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.1e-18 Score=149.31 Aligned_cols=67 Identities=42% Similarity=0.661 Sum_probs=62.2
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
..|||+||||+++||.+|||+|||++++++|||++++ .++++|++|++||++|+||.+|+.||++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4799999999999999999999999999999999974 467899999999999999999999999643
No 15
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=154.03 Aligned_cols=67 Identities=45% Similarity=0.751 Sum_probs=62.5
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
...|||+||||+++|+.+|||+|||+|+++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 35799999999999999999999999999999999974 57899999999999999999999999954
No 16
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=153.82 Aligned_cols=66 Identities=42% Similarity=0.685 Sum_probs=61.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 4799999999999999999999999999999999974 46789999999999999999999999964
No 17
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.8e-18 Score=152.67 Aligned_cols=66 Identities=50% Similarity=0.750 Sum_probs=61.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.++||+|||+|+++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 69 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFG 69 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcC
Confidence 4799999999999999999999999999999999974 46799999999999999999999999964
No 18
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.8e-18 Score=152.13 Aligned_cols=65 Identities=42% Similarity=0.638 Sum_probs=61.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 699999999999999999999999999999999974 46789999999999999999999999964
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.7e-18 Score=153.32 Aligned_cols=66 Identities=45% Similarity=0.734 Sum_probs=61.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 4799999999999999999999999999999999974 46789999999999999999999999964
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.7e-18 Score=152.38 Aligned_cols=67 Identities=43% Similarity=0.609 Sum_probs=62.2
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
...|||+||||+++|+.+|||+|||+|+++||||+++. .+++.|++|++||++|+||.+|+.||++.
T Consensus 2 ~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 2 VKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 35799999999999999999999999999999999974 46789999999999999999999999964
No 21
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.7e-18 Score=142.90 Aligned_cols=67 Identities=37% Similarity=0.588 Sum_probs=63.2
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
..|+|+||||+++|+.++|||+||+|++++|||++++. +.++|++||+||+||+||.+|..||.++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~ 98 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE 98 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence 67899999999999999999999999999999999873 78999999999999999999999999744
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.7e-18 Score=153.07 Aligned_cols=66 Identities=42% Similarity=0.642 Sum_probs=61.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.++||+|||+++++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G 70 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFG 70 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcC
Confidence 4699999999999999999999999999999999974 46789999999999999999999999964
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.4e-18 Score=152.49 Aligned_cols=64 Identities=47% Similarity=0.775 Sum_probs=60.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 4699999999999999999999999999999999974 467999999999999999999999998
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=151.84 Aligned_cols=66 Identities=42% Similarity=0.655 Sum_probs=61.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.++||+|||+++++||||+++. .++++|++|++||+||+||.+|+.||++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g 70 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFG 70 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcc
Confidence 4799999999999999999999999999999999974 35789999999999999999999999964
No 25
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.3e-18 Score=152.15 Aligned_cols=65 Identities=40% Similarity=0.612 Sum_probs=61.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
+|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999975 35789999999999999999999999864
No 26
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.1e-18 Score=145.46 Aligned_cols=70 Identities=40% Similarity=0.644 Sum_probs=64.3
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
....|||+||||+++|+..|||+||++|+++||||.+.+ .+.++|++|.+||++|+|+++|..||..+..
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 334499999999999999999999999999999999986 5789999999999999999999999997654
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=4e-18 Score=150.24 Aligned_cols=66 Identities=47% Similarity=0.681 Sum_probs=61.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+|+++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 4799999999999999999999999999999999973 36789999999999999999999999864
No 28
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=4.2e-18 Score=151.07 Aligned_cols=65 Identities=43% Similarity=0.640 Sum_probs=60.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.+|||+|||+++++||||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 489999999999999999999999999999999974 46789999999999999999999999964
No 29
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.6e-18 Score=150.08 Aligned_cols=65 Identities=51% Similarity=0.764 Sum_probs=61.0
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.++||+|||+|+++||||+++. .+++.|++|++||++|+||.+|+.||++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g 69 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFG 69 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 699999999999999999999999999999999974 35789999999999999999999999864
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.3e-17 Score=147.15 Aligned_cols=70 Identities=40% Similarity=0.623 Sum_probs=64.2
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+.+.+.||+||||.++++..+||++||+|+++||||++|+ ++.+.|+.|+.||+|||||+.|+.||....
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 4456899999999999999999999999999999999986 367899999999999999999999998654
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.70 E-value=2.1e-17 Score=142.28 Aligned_cols=66 Identities=35% Similarity=0.625 Sum_probs=61.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++++.++||+|||++++++|||+++. .++++|++|++||++|+||.+|+.||.+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999999999999999999999999999864 46789999999999999999999999864
No 32
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2e-17 Score=145.89 Aligned_cols=65 Identities=38% Similarity=0.624 Sum_probs=61.0
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||++|+|+.+|+.||++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 699999999999999999999999999999999974 46789999999999999999999999964
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.69 E-value=2.2e-17 Score=144.65 Aligned_cols=64 Identities=50% Similarity=0.754 Sum_probs=60.2
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 50 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
|||+||||+++|+.++||+|||+++++||||++++ .++++|++|++||++|+||.+|+.||.+.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g 65 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFG 65 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcc
Confidence 79999999999999999999999999999999974 46789999999999999999999999854
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.1e-17 Score=145.41 Aligned_cols=65 Identities=40% Similarity=0.704 Sum_probs=60.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.+|||+|||+|++++|||+++. .++++|++|++||++|+||.+|+.||.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G 70 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG 70 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccC
Confidence 699999999999999999999999999999999974 36789999999999999999999999854
No 35
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.5e-17 Score=145.89 Aligned_cols=66 Identities=45% Similarity=0.609 Sum_probs=61.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++|+.+|||+|||+++++||||+++. .++++|++|++||++|+||.+|+.||++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 5799999999999999999999999999999999974 46789999999999999999999999953
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.2e-17 Score=144.49 Aligned_cols=65 Identities=49% Similarity=0.691 Sum_probs=61.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.++||+|||++++++|||++++ .++++|++|++||++|+||.+|+.||++.
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 599999999999999999999999999999999975 46789999999999999999999999964
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.2e-17 Score=139.78 Aligned_cols=69 Identities=41% Similarity=0.601 Sum_probs=64.3
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
..|||+||||+++++..+|++|||+.++++||||||+ .+.+.|+.+.+||+||+|+..|..||..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~ 74 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG 74 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence 5799999999999999999999999999999999985 47899999999999999999999999976543
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=4.3e-17 Score=143.88 Aligned_cols=65 Identities=42% Similarity=0.722 Sum_probs=61.2
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.++||+|||++++++|||++++ .++++|++|++||++|+||.+|+.||.+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g 68 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFG 68 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcc
Confidence 699999999999999999999999999999999975 46789999999999999999999999854
No 39
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.4e-16 Score=104.93 Aligned_cols=57 Identities=47% Similarity=0.707 Sum_probs=52.4
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCc
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDL 105 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~ 105 (191)
+|||+||||+++++.++||++|+++++.+|||+++. .+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999984 367899999999999999853
No 40
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=9.4e-17 Score=141.99 Aligned_cols=68 Identities=32% Similarity=0.498 Sum_probs=62.0
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
...|||.+|+|+++|+.+|||+|||++++.|||||..++ +++.|+.|.+||+||+||++|+.||.+..
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~ 79 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE 79 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence 345999999999999999999999999999999998743 57899999999999999999999999643
No 41
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.65 E-value=2.3e-16 Score=101.94 Aligned_cols=53 Identities=49% Similarity=0.806 Sum_probs=50.0
Q ss_pred CchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcC
Q 029583 50 NYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMR 102 (191)
Q Consensus 50 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d 102 (191)
|||+||||+++++.++||++|+++++++|||+++. .+.+.|.+|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 69999999999999999999999999999999985 467899999999999986
No 42
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.65 E-value=1.6e-16 Score=150.78 Aligned_cols=68 Identities=34% Similarity=0.487 Sum_probs=62.7
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
...++||+||||+++|+..+||+|||++++++|||+++. .+.++|+.|++||++|+||.+|+.||.++
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G 638 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFG 638 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 346899999999999999999999999999999999975 46789999999999999999999999953
No 43
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.4e-16 Score=124.82 Aligned_cols=73 Identities=33% Similarity=0.495 Sum_probs=64.8
Q ss_pred CCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 44 RASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
......|+||||||+|+++..|||+|||+|++++||||+++ ..++.+..|++||+.|+|+..|+.|..+..+.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 34456799999999999999999999999999999999976 35678889999999999999999999975443
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=6.3e-16 Score=126.42 Aligned_cols=66 Identities=38% Similarity=0.613 Sum_probs=60.9
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ----KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+|+|+||||.++|+..+|++||+++++++|||+++. .+...|+.++.||.||+|.++|+.||...
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG 82 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETG 82 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccC
Confidence 4599999999999999999999999999999999963 35689999999999999999999999953
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.59 E-value=1.3e-15 Score=118.76 Aligned_cols=66 Identities=26% Similarity=0.304 Sum_probs=60.1
Q ss_pred ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
...+|+||||+++| |.++||+|||++++++|||+++ ++++|++|++||++|+|+.+|..||.....
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg--~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG--DEEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc--hhHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 35789999999999 9999999999999999999976 458999999999999999999999986443
No 46
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=2.9e-15 Score=129.32 Aligned_cols=71 Identities=35% Similarity=0.596 Sum_probs=64.1
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
+..+|||+||||.++|+..||-+|||+++.+||||-.+++ ++++|..|..|-+||+||++|+.||..-.+.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPL 466 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPL 466 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCC
Confidence 4578999999999999999999999999999999999863 5788999999999999999999999854433
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=3.2e-15 Score=119.57 Aligned_cols=66 Identities=44% Similarity=0.667 Sum_probs=61.7
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhhhh
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 112 (191)
...+||+||||+++++.++|+++||++++++|||+++.. +++.|+.|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 457999999999999999999999999999999999853 569999999999999999999999984
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.56 E-value=2.6e-15 Score=139.92 Aligned_cols=65 Identities=43% Similarity=0.647 Sum_probs=60.6
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.|||+||||+++|+.++||++||++++++|||+++. .+.++|++|++||++|+||.+|+.||.+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG 67 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYG 67 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence 699999999999999999999999999999999875 45678999999999999999999999964
No 49
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.55 E-value=9.9e-15 Score=116.06 Aligned_cols=66 Identities=26% Similarity=0.513 Sum_probs=57.7
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 49 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.|||+||||++. ++..+|+++||++++++|||+.... +.+.+..||+||++|+||.+|..|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 489999999995 7889999999999999999997642 24577899999999999999999997544
No 50
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.53 E-value=1.2e-14 Score=114.96 Aligned_cols=66 Identities=32% Similarity=0.445 Sum_probs=57.5
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-----HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 49 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.|||++|||++. ++..+|+++||++++++|||++.... .+.+..||+||++|+||.+|+.|+-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 589999999996 78999999999999999999986432 2346799999999999999999987653
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.51 E-value=3.5e-14 Score=113.03 Aligned_cols=68 Identities=24% Similarity=0.367 Sum_probs=59.9
Q ss_pred CccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 47 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+..|||++|||++. .+..+|+++||++++++|||++... +.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 46899999999996 6789999999999999999998642 24568899999999999999999998654
No 52
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=5.9e-14 Score=112.06 Aligned_cols=67 Identities=25% Similarity=0.390 Sum_probs=57.7
Q ss_pred ccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc--h-----HHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 48 KKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK--G-----HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 48 ~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~--~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
..|||+||||++. ++..+|+++||++++++|||++... . .+.+..||+||++|+||.+|..|+-.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4799999999995 6899999999999999999998642 2 2335799999999999999999997544
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.45 E-value=1.3e-13 Score=102.64 Aligned_cols=59 Identities=31% Similarity=0.418 Sum_probs=52.3
Q ss_pred CCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhc
Q 029583 41 AGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (191)
Q Consensus 41 ~~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~ 101 (191)
..+..+...++|+||||+++++.+|||++||++++++|||+.+ +.+.+++|++||++|.
T Consensus 57 ~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG--s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 57 GFENPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG--STYIASKVNEAKDLLL 115 (116)
T ss_pred cccCCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHh
Confidence 4455666789999999999999999999999999999999964 5578899999999985
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-13 Score=121.09 Aligned_cols=71 Identities=25% Similarity=0.370 Sum_probs=65.2
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
.+..|+|.+|||+++++.++||+.||+++...|||||.. .+++.|+.++.||++|+|+++|+.||..+...
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke 303 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE 303 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence 446899999999999999999999999999999999974 57899999999999999999999999886543
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=2.7e-13 Score=112.44 Aligned_cols=71 Identities=32% Similarity=0.565 Sum_probs=64.8
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhccccc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRF 118 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~ 118 (191)
..|.|+||||+++++..+|.+|||+|++++|||++++ ++.+.|+.|.+||++|.|.+.|..||-.+..+..
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd~ 103 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPDE 103 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCchH
Confidence 4699999999999999999999999999999999986 5668999999999999999999999987765544
No 56
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.3e-12 Score=109.07 Aligned_cols=67 Identities=40% Similarity=0.600 Sum_probs=61.1
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
..|||+||+|.++|+.++|++||+++++++|||+++.. ++++|++|.+||++|+|+.+|..||.+..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998765 44578999999999999999999999754
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.30 E-value=3.2e-12 Score=108.29 Aligned_cols=57 Identities=35% Similarity=0.547 Sum_probs=50.7
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHHHhcC
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMR 102 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---------~~~~~~~~I~~Ay~vL~d 102 (191)
....++|+||||++++|.++||++||++++++|||+... .++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 445799999999999999999999999999999999632 246799999999999985
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.7e-12 Score=114.10 Aligned_cols=67 Identities=37% Similarity=0.579 Sum_probs=62.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCchhhhhhh
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 112 (191)
++..|||.|||+.++++..+||++||++++.+|||++.. +++.+|++|.+||.+|+||.+|..||..
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 567899999999999999999999999999999999863 4678999999999999999999999984
No 59
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.29 E-value=5.7e-12 Score=100.37 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=57.8
Q ss_pred cCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 49 KNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 49 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.|||++|||++. .+...++++|+++++++|||+....+ .+....||+||.+|+||.+|+.|--.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 599999999995 89999999999999999999986432 3456789999999999999999987654
No 60
>PHA02624 large T antigen; Provisional
Probab=99.27 E-value=4e-12 Score=117.23 Aligned_cols=60 Identities=35% Similarity=0.502 Sum_probs=56.5
Q ss_pred ccCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhh
Q 029583 48 KKNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDY 109 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~Y 109 (191)
..++|++|||+++| +.++||+|||++++++|||+++ +++.|++|++||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG--deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG--DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999975 468999999999999999999988
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.11 E-value=4.9e-11 Score=105.80 Aligned_cols=132 Identities=21% Similarity=0.251 Sum_probs=85.4
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH 119 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 119 (191)
..-|+||||||+.+++..+||++||+|+.++||||.++. -++..++|++||..|+|...|+.|-.++.+..+.
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ 175 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ 175 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence 346999999999999999999999999999999998751 2578899999999999999999999865443321
Q ss_pred cCCCCCCCCCCCCCCCC-CCCCceEeecccccccccccccccccceecccccccccceeehhHH
Q 029583 120 FGTNASAGFSRSSWKGP-PRPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTKI 182 (191)
Q Consensus 120 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 182 (191)
. .+.|-..+.|--. .+.--+|+....-.|-. ..-..++-|.........++.|.||..-
T Consensus 176 h---ts~gIAlPk~iv~se~s~y~~v~Y~lllGv~-LPy~v~rwW~~~r~ytk~gvh~vT~~~f 235 (610)
T COG5407 176 H---TSEGIALPKVIVRSERSMYAFVMYSLLLGVF-LPYWVYRWWREIRDYTKVGVHFVTMEMF 235 (610)
T ss_pred c---ccceeecchheecCCCCceeHHHHHHHHHHH-HHHHHHHHHHhhhhhcccceeeeeHHHH
Confidence 1 1223344444211 11111111111111111 1122344577776777777777776543
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.07 E-value=2.5e-10 Score=89.67 Aligned_cols=54 Identities=30% Similarity=0.490 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 61 ANGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 61 a~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.+..+|+++||++++++|||+.... +.+.+..||+||++|+||.+|+.|+-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5789999999999999999997532 34678999999999999999999998765
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1e-10 Score=98.01 Aligned_cols=98 Identities=30% Similarity=0.287 Sum_probs=74.0
Q ss_pred CccCchhhcCCCC---CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc
Q 029583 47 KKKNYYELLGVSV---EANGQEIKEAYRKLQKKYHPDIAGQ----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH 119 (191)
Q Consensus 47 ~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~HPDk~~~----~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~ 119 (191)
+..|+|.+|||+. .++..+|.++.++.+.+||||+... .....|..|+.||+||+|+.+|..||..--..+..
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advp 120 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVP 120 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCC
Confidence 3479999999987 6889999999999999999999732 24688999999999999999999999864433332
Q ss_pred cCCCCCCCCCCCCCCCCCCCCceEe
Q 029583 120 FGTNASAGFSRSSWKGPPRPEALFV 144 (191)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (191)
....+.....|..|..+++.+..|+
T Consensus 121 pp~~~t~~~Ffe~w~pvFe~earFS 145 (379)
T COG5269 121 PPRIYTPDEFFEVWEPVFEREARFS 145 (379)
T ss_pred CccCCCchhHHHHHHHHHHhhhhcc
Confidence 2222233345566766666666555
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.1e-10 Score=89.65 Aligned_cols=65 Identities=29% Similarity=0.434 Sum_probs=57.6
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
-+-|+|+||.|.|+.+.++||+.||++++..|||+|++. +...|..|..||..|-|+..|..-+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 357999999999999999999999999999999999975 56789999999999999986655443
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.8e-08 Score=70.73 Aligned_cols=67 Identities=25% Similarity=0.271 Sum_probs=57.5
Q ss_pred eccCCCCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCC
Q 029583 36 CCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGD 104 (191)
Q Consensus 36 ~~~~~~~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~ 104 (191)
.....+.++.+..+..-.||||+|+++.+.||+|+|+.+...|||+.+.+ .....||||+++|....
T Consensus 43 ~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--YlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 43 AFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--YLASKINEAKDLLEGTS 109 (112)
T ss_pred hhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--HHHHHHHHHHHHHhccc
Confidence 33455667788888999999999999999999999999999999999854 66678999999997543
No 66
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.5e-07 Score=86.64 Aligned_cols=57 Identities=32% Similarity=0.455 Sum_probs=48.8
Q ss_pred CCCCccCchhhcCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhc
Q 029583 44 RASKKKNYYELLGVSVE----ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (191)
Q Consensus 44 ~~~~~~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~ 101 (191)
..+...+.|+||.|+-+ -+.+.||++|++++.+||||||| +..+.|..+|+||+.|+
T Consensus 1276 ~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP-EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1276 ATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP-EGREMFERVNKAYELLS 1336 (2235)
T ss_pred CccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHHHH
Confidence 33456689999999863 35589999999999999999997 56789999999999998
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=6.2e-07 Score=74.06 Aligned_cols=55 Identities=29% Similarity=0.585 Sum_probs=49.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHH-HhcC
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHTLLLNEAYK-VLMR 102 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~~~I~~Ay~-vL~d 102 (191)
-+.+|.||||..+++.++++.+|.+|++++|||...++ +.+.|.+|.+||. +|+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999864 5689999999998 6653
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.9e-06 Score=63.56 Aligned_cols=69 Identities=26% Similarity=0.517 Sum_probs=56.6
Q ss_pred CCccCchhhcCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC-------chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSV--EANGQEIKEAYRKLQKKYHPDIAGQ-------KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~--~a~~~~Ik~ayr~l~~~~HPDk~~~-------~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+...+||.++|... ..++..++..|.-..+++|||+... -+.+...++|+||++|.||.+|+.|--.+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45679999998765 5677788889999999999999542 245678899999999999999999986544
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0013 Score=52.40 Aligned_cols=52 Identities=38% Similarity=0.583 Sum_probs=44.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHHHh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVL 100 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---------~~~~~~~~I~~Ay~vL 100 (191)
.+.|.+||+.+.++..+|+++|+++....|||+-.. ...+.+++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999998632 2356778899988753
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0012 Score=52.52 Aligned_cols=65 Identities=29% Similarity=0.500 Sum_probs=51.4
Q ss_pred CchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCch-------HHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 50 NYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKG-------HEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 50 d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+++..+|.++. .+.+.++..|+.+.+.+|||+....+ .+.+..++.||.+|.||..|..|--...
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 45666676664 35677999999999999999987432 2467789999999999999999986543
No 71
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.45 E-value=0.0072 Score=45.87 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=42.0
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCC
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGD 104 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~ 104 (191)
.+....-..||||++..+.++|.+.|.+|....+|++++ +-.....|..|.+.|..+.
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG--SfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGG--SFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC--CHHHHHHHHHHHHHHHHHH
Confidence 455567889999999999999999999999999999886 5566678888888887443
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.35 E-value=0.0047 Score=56.24 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCc
Q 029583 59 VEANGQEIKEAYRKLQKKYHPDIAGQK 85 (191)
Q Consensus 59 ~~a~~~~Ik~ayr~l~~~~HPDk~~~~ 85 (191)
.-++.++||++|||..+..||||.+..
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~ 424 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQK 424 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCC
Confidence 347899999999999999999998754
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=90.56 E-value=0.62 Score=37.82 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhc
Q 029583 58 SVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (191)
Q Consensus 58 ~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~ 101 (191)
+++|+.|||.+|+.++..+|-- +++...+|..|||.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g------d~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG------DEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHHH
Confidence 5789999999999999999832 3356678999999764
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=88.93 E-value=1.1 Score=29.17 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=24.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHH
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQK 75 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~ 75 (191)
.+.|++|||+++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998877
No 75
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=82.67 E-value=1.7 Score=37.63 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC------chHHHHHHHHHHHHHhcCCCchhhhhhh
Q 029583 61 ANGQEIKEAYRKLQKKYHPDIAGQ------KGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (191)
Q Consensus 61 a~~~~Ik~ayr~l~~~~HPDk~~~------~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 112 (191)
++..+|+.+|+..++..||++... ..++.++.|.+||.+|.+..+|...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 567889999999999999998742 3467789999999999986665555543
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=80.88 E-value=4.4 Score=29.99 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHhcCCC
Q 029583 60 EANGQEIKEAYRKLQKKYHPDIAGQK------GHEHTLLLNEAYKVLMRGD 104 (191)
Q Consensus 60 ~a~~~~Ik~ayr~l~~~~HPDk~~~~------~~~~~~~I~~Ay~vL~d~~ 104 (191)
..+..+++.+.|..-++.|||..... .++-++.++.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999987642 2344566666666665543
No 77
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.41 E-value=16 Score=27.73 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=38.6
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLM 101 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~ 101 (191)
-..--.||+|++..+.++|.+.|..|-....+.+.+. -.....|-.|-+-|.
T Consensus 58 lqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS--FYLQSKVfRAkErld 109 (132)
T KOG3442|consen 58 LQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS--FYLQSKVFRAKERLD 109 (132)
T ss_pred HHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc--eeehHHHHHHHHHHH
Confidence 3456789999999999999999999999998888763 222233445555444
No 78
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=59.55 E-value=56 Score=22.60 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=37.4
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHH----HHHHHHHHHhcC
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-GHEHT----LLLNEAYKVLMR 102 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-~~~~~----~~I~~Ay~vL~d 102 (191)
+|--.+.|+.|-++.+||..|-.+.++|..=-..+.. ..+.| .+|..+-..|.|
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~ 61 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLD 61 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555677899999999999999999988866555532 23333 456666555554
No 79
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=55.00 E-value=2.2 Score=29.86 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.7
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehhHH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTKI 182 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 182 (191)
+-.+.++..+|..|..+.|. |.++.+.....+.|++||..
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~~vd~~ 60 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPE----LRKAARALKGKVKVGSVDCQ 60 (104)
T ss_pred eEEEEEECCCCHHHHHHHHH----HHHHHHHhcCCcEEEEEECC
Confidence 55677789999999999998 88888555555777777643
No 80
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=52.37 E-value=8.7 Score=20.17 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=12.1
Q ss_pred ceEeecccccccccc
Q 029583 141 ALFVDENACIENVYT 155 (191)
Q Consensus 141 ~~~~~~~~c~gc~~~ 155 (191)
.+++|...|+||...
T Consensus 2 ~~~iD~~rCiGC~~C 16 (22)
T PF12797_consen 2 GMVIDLERCIGCGAC 16 (22)
T ss_pred ceEEccccccCchhH
Confidence 468899999998653
No 81
>COG2879 Uncharacterized small protein [Function unknown]
Probab=51.67 E-value=32 Score=22.91 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHH
Q 029583 69 AYRKLQKKYHPDIAGQKGHEHTLLLNEA 96 (191)
Q Consensus 69 ayr~l~~~~HPDk~~~~~~~~~~~I~~A 96 (191)
.|.+-+++.|||+.+-.-++.|.+-.+|
T Consensus 27 nYVehmr~~hPd~p~mT~~EFfrec~da 54 (65)
T COG2879 27 NYVEHMRKKHPDKPPMTYEEFFRECQDA 54 (65)
T ss_pred HHHHHHHHhCcCCCcccHHHHHHHHHHh
Confidence 5777899999999876666766655443
No 82
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=51.00 E-value=74 Score=21.98 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=26.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA 82 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 82 (191)
+|--+++|++|-++..||+.|-++.++++.--..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~ 36 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTH 36 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCC
Confidence 5667889999999999999998877777644333
No 83
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=50.69 E-value=3 Score=29.15 Aligned_cols=41 Identities=12% Similarity=0.101 Sum_probs=30.8
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehhHH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTKI 182 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 182 (191)
.+..+.++..+|..|..+.|. |.++.+.....+.|+.||..
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~----~~~~a~~~~~~~~~~~vd~~ 59 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPT----WREFAKEMDGVIRIGAVNCG 59 (101)
T ss_pred CeEEEEEECCCChHHHHhHHH----HHHHHHHhcCceEEEEEeCC
Confidence 345677789999999999998 88888555555677777643
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=45.98 E-value=3.6 Score=30.24 Aligned_cols=41 Identities=0% Similarity=-0.163 Sum_probs=31.5
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehhHH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTKI 182 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~~ 182 (191)
..-.+.++..||..|..+.|. |.++.+.....+.|+.||..
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~----~~~la~~~~~~v~~~~Vd~d 70 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQE----FEQVAQKLSDQVLFVAINCW 70 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHH----HHHHHHHhcCCeEEEEEECC
Confidence 345667788999999999998 88888665555777888753
No 85
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=40.71 E-value=5.8 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=28.1
Q ss_pred ceEeecccccccccccccccccceeccccc-ccccceeehhH
Q 029583 141 ALFVDENACIENVYTMPVTHLLWMKLPDVH-ELRFNMGTVTK 181 (191)
Q Consensus 141 ~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~-~~~~~~~~~~~ 181 (191)
.+.+...+|..|....|. |.++.+.. ...+.|+.||.
T Consensus 20 lv~f~a~wC~~C~~~~p~----~~~l~~~~~~~~v~~~~vd~ 57 (101)
T cd02994 20 MIEFYAPWCPACQQLQPE----WEEFADWSDDLGINVAKVDV 57 (101)
T ss_pred EEEEECCCCHHHHHHhHH----HHHHHHhhccCCeEEEEEEc
Confidence 577788999999999998 88887433 34577777763
No 86
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=40.47 E-value=5.4 Score=28.67 Aligned_cols=41 Identities=20% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCCceEeecccccccccccccccccceeccccc-ccccceeehhH
Q 029583 137 PRPEALFVDENACIENVYTMPVTHLLWMKLPDVH-ELRFNMGTVTK 181 (191)
Q Consensus 137 ~~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~-~~~~~~~~~~~ 181 (191)
-.+..+.+...+|..|....|. |.++.+.. ...+.|+.|+.
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~----~~~l~~~~~~~~v~~~~vd~ 65 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPV----WKEVIQELEPLGVGIATVNA 65 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHH----HHHHHHHHHhcCceEEEEec
Confidence 3456778889999999999998 77777333 33567777764
No 87
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=36.69 E-value=24 Score=16.10 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhc
Q 029583 90 TLLLNEAYKVLM 101 (191)
Q Consensus 90 ~~~I~~Ay~vL~ 101 (191)
|..+..||+.|+
T Consensus 3 ~~~V~~aY~~l~ 14 (14)
T PF07709_consen 3 FEKVKNAYEQLS 14 (14)
T ss_pred HHHHHHHHHhcC
Confidence 556677776653
No 88
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=35.22 E-value=7.5 Score=26.60 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.5
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|.+|+
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~----~~~~~~~~~~~~~~~~vd 51 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPL----LERLAEEYQGQFVLAKVN 51 (96)
T ss_pred eEEEEEECCCChHHHHHHHH----HHHHHHHhCCcEEEEEEe
Confidence 44677788999999999998 777664333345555554
No 89
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=33.80 E-value=8.6 Score=25.71 Aligned_cols=40 Identities=13% Similarity=0.000 Sum_probs=30.0
Q ss_pred CCceEeecccccccccccccccccceeccccc--ccccceeehhHH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVH--ELRFNMGTVTKI 182 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~--~~~~~~~~~~~~ 182 (191)
+..+.+...+|..|....+. |.++.+.. ...+.|.++|..
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPE----YEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred cEEEEEECCCCHHHHhhhHH----HHHHHHHhccCCceEEEEeecc
Confidence 55677788999999999998 88777444 456777777643
No 90
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=32.34 E-value=10 Score=26.49 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=27.2
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.......+.|..++
T Consensus 20 ~~lv~f~a~wC~~C~~~~~~----~~~~a~~~~~~~~~~~v~ 57 (109)
T cd03002 20 TTLVEFYAPWCGHCKNLKPE----YAKAAKELDGLVQVAAVD 57 (109)
T ss_pred eEEEEEECCCCHHHHhhChH----HHHHHHHhcCCceEEEEe
Confidence 35677788999999999998 777774444445555554
No 91
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=31.72 E-value=6.5 Score=26.85 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=30.3
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehhH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTK 181 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~ 181 (191)
.+-.+.+...+|..|....|. |.++.+.....+.|+.|+.
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~----~~~~~~~~~~~v~~~~vd~ 57 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPI----LEKLAKEYKDNVKFAKVDC 57 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHH----HHHHHHHTTTTSEEEEEET
T ss_pred CCEEEEEeCCCCCccccccce----ecccccccccccccchhhh
Confidence 455677788999999999998 8888754444677777654
No 92
>PRK09381 trxA thioredoxin; Provisional
Probab=30.97 E-value=9.8 Score=26.78 Aligned_cols=39 Identities=8% Similarity=0.038 Sum_probs=27.7
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehhH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTK 181 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~ 181 (191)
+..+.+...+|..|....|. |+++.+.....+.|+.++.
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~----~~~l~~~~~~~~~~~~vd~ 61 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPI----LDEIADEYQGKLTVAKLNI 61 (109)
T ss_pred eEEEEEECCCCHHHHHHhHH----HHHHHHHhCCCcEEEEEEC
Confidence 45667778999999999998 7777744444455665543
No 93
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=30.57 E-value=10 Score=25.99 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=28.9
Q ss_pred CCCceEeecccccccccccccccccceeccccccc--ccceeehhH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHEL--RFNMGTVTK 181 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~--~~~~~~~~~ 181 (191)
.+-.+.+...+|..|..+.+. |.++.+.... .+.|+.+|.
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~~~id~ 60 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPI----YEELAEKLKGDDNVVIAKMDA 60 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhH----HHHHHHHhcCCCCEEEEEEeC
Confidence 344567788999999999998 8888754332 466666664
No 94
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=29.62 E-value=89 Score=19.56 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred hhhcCCCCCCCHHHHHHHHHHHH
Q 029583 52 YELLGVSVEANGQEIKEAYRKLQ 74 (191)
Q Consensus 52 Y~iLgv~~~a~~~~Ik~ayr~l~ 74 (191)
|.+=|+.|..+++|.|+..|+-.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dv 24 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDV 24 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHH
Confidence 45668999999999999988744
No 95
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=29.14 E-value=10 Score=26.04 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=26.7
Q ss_pred CceEeecccccccccccccccccceeccccccc---ccceeehhH
Q 029583 140 EALFVDENACIENVYTMPVTHLLWMKLPDVHEL---RFNMGTVTK 181 (191)
Q Consensus 140 ~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~---~~~~~~~~~ 181 (191)
-.+.+...+|..|....|. |.++.+.... .+.++.|+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~~~~~vd~ 59 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPT----WEQLAKKFNNENPSVKIAKVDC 59 (102)
T ss_pred EEEEEECCCCHHHHHhCHH----HHHHHHHHhccCCcEEEEEEEC
Confidence 4566778999999999998 7777643332 466666653
No 96
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=27.58 E-value=74 Score=17.56 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q 029583 63 GQEIKEAYRKLQKKYHP 79 (191)
Q Consensus 63 ~~~Ik~ayr~l~~~~HP 79 (191)
.++.|.+-|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788899999999994
No 97
>PF03858 Crust_neuro_H: Crustacean neurohormone H; InterPro: IPR005558 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. Crustacean neurohormone H proteins are referred to as precursor-related peptides as they are typically co-transcribed and translated with the CHH neurohormone (IPR001166 from INTERPRO). However, in some species this neuropeptide is synthesized as a separate protein. Furthermore, neurohormone H can undergo proteolysis to give rise to 5 different neuropeptides [].
Probab=26.51 E-value=36 Score=20.60 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=12.9
Q ss_pred cceeehhHHHHHHhh
Q 029583 174 FNMGTVTKILSELHS 188 (191)
Q Consensus 174 ~~~~~~~~~~~~l~~ 188 (191)
-+|++|.|.|.+|++
T Consensus 4 eG~GRMerLLaSlrg 18 (41)
T PF03858_consen 4 EGFGRMERLLASLRG 18 (41)
T ss_pred cchhhHHHHHHHHhc
Confidence 479999999999983
No 98
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=25.59 E-value=1.1e+02 Score=20.00 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 68 EAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 68 ~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
+..|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 14 ~~~r~~~~~~~p~~~---~~eisk~l~~~Wk~ls~~eK~~y~~~ 54 (72)
T cd01388 14 KRHRRKVLQEYPLKE---NRAISKILGDRWKALSNEEKQPYYEE 54 (72)
T ss_pred HHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455667778899853 45677889999999998776554443
No 99
>PF04328 DUF466: Protein of unknown function (DUF466); InterPro: IPR007423 This is a small bacterial protein of unknown function.
Probab=25.37 E-value=1.6e+02 Score=19.50 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCCCchHHHHHHHH
Q 029583 68 EAYRKLQKKYHPDIAGQKGHEHTLLLN 94 (191)
Q Consensus 68 ~ayr~l~~~~HPDk~~~~~~~~~~~I~ 94 (191)
..|-.-....|||+.+-.-.+.|..-.
T Consensus 26 e~Yv~H~~~~HP~~p~ms~~eF~r~r~ 52 (65)
T PF04328_consen 26 ERYVEHMRRHHPDEPPMSEREFFRERQ 52 (65)
T ss_pred HHHHHHHHHHCcCCCCCCHHHHHHHHH
Confidence 467777899999997654445554433
No 100
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=25.18 E-value=16 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCceEeecccccccccccccccccceeccccccc--ccceeehhH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHEL--RFNMGTVTK 181 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~--~~~~~~~~~ 181 (191)
+-.+.+...+|..|....+. |.++.+.... .+.++.++.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~----~~~~~~~~~~~~~~~~~~~d~ 55 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPE----YEKLAKELKGDPDIVLAKVDA 55 (102)
T ss_pred cEEEEEECCCCHHHHhhChH----HHHHHHHhccCCceEEEEEEc
Confidence 34566678999999999887 7776643333 356665543
No 101
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=24.91 E-value=15 Score=30.39 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=30.9
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehhH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTK 181 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~ 181 (191)
.+..+.++..+|..|..+.|. |.++.+.....+.|+.++.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~----~e~la~~~~~~v~~~~VD~ 92 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPA----WERLAKALKGQVNVADLDA 92 (224)
T ss_pred CCEEEEEECCCChHHHHHHHH----HHHHHHHcCCCeEEEEecC
Confidence 355678889999999999998 8888755555567777664
No 102
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=23.10 E-value=24 Score=23.30 Aligned_cols=30 Identities=37% Similarity=0.719 Sum_probs=20.9
Q ss_pred cCchhhcCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 029583 49 KNYYELLGVSVEANGQEI-KEAYRKLQKKYHPDIA 82 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~I-k~ayr~l~~~~HPDk~ 82 (191)
.+++++||+++ +++ ...........|||-.
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 57899999965 555 5566677889999854
No 103
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=23.07 E-value=39 Score=21.70 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=15.7
Q ss_pred cceeehhHHHHHHhhcCC
Q 029583 174 FNMGTVTKILSELHSLGG 191 (191)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~ 191 (191)
+.+..|++.+|++|..||
T Consensus 31 Vpy~~ls~~~q~I~r~GG 48 (56)
T PF01383_consen 31 VPYSQLSQEMQRINRQGG 48 (56)
T ss_dssp EEHHHHHHHHHHHHHCT-
T ss_pred EcHHHhHHHHHHHHHCCC
Confidence 778899999999999998
No 104
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=22.02 E-value=1.5e+02 Score=18.25 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhh
Q 029583 66 IKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (191)
Q Consensus 66 Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD 110 (191)
-.+.++...+.-|||.. ..+....+.+.|..|++.++....+
T Consensus 11 f~~~~~~~~~~~~~~~~---~~~i~~~~~~~W~~l~~~~k~~y~~ 52 (66)
T cd00084 11 FSQEHRAEVKAENPGLS---VGEISKILGEMWKSLSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHHHHCcCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34566777788888843 4567788999999999765544333
No 105
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.69 E-value=2e+02 Score=24.93 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=42.0
Q ss_pred ccCchhhcCCCC-CCCHHHHHHHHHHHHH-------HhCCCCCCC-----chHHHHHHHHHHHHHhcCCCchhhh
Q 029583 48 KKNYYELLGVSV-EANGQEIKEAYRKLQK-------KYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDY 109 (191)
Q Consensus 48 ~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~-------~~HPDk~~~-----~~~~~~~~I~~Ay~vL~d~~~R~~Y 109 (191)
+.++++-||++. ..+.+|+++-.+.++. +.++|..+. ..++.++++.+||+.|.+.-..-.|
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~~p~l~~ 155 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAERYPFLSG 155 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHhCCccCC
Confidence 457888899998 7899998776665543 334443321 2367788999999999875544433
No 106
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=21.55 E-value=1.6e+02 Score=18.27 Aligned_cols=39 Identities=31% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhh
Q 029583 69 AYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (191)
Q Consensus 69 ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD 110 (191)
..|...+.-||+.. ..+..+.|.+.|..|++.++....+
T Consensus 14 ~~r~~~~~~~p~~~---~~~i~~~~~~~W~~ls~~eK~~y~~ 52 (66)
T cd01390 14 EQRPKLKKENPDAS---VTEVTKILGEKWKELSEEEKKKYEE 52 (66)
T ss_pred HHHHHHHHHCcCCC---HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34556677788843 4577788999999999766554333
No 107
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=21.40 E-value=17 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=20.0
Q ss_pred CCceEeecccccccccccccccccceeccc
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPD 168 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~ 168 (191)
+-.+.+...+|..|..+.+. +.++.+
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~----l~~l~~ 47 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPD----VAKLKQ 47 (142)
T ss_pred EEEEEEECCcCHHHHHhHHH----HHHHHH
Confidence 45667778999999999988 666553
No 108
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=21.11 E-value=17 Score=26.83 Aligned_cols=39 Identities=8% Similarity=-0.205 Sum_probs=27.6
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehhH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTK 181 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~ 181 (191)
+-.+.+...||.-|..+.|+ +.++.+-....+.|.+||.
T Consensus 16 ~vVV~F~A~WCgpCk~m~P~----le~la~~~~~~v~f~kVDv 54 (114)
T cd02954 16 VVVIRFGRDWDPVCMQMDEV----LAKIAEDVSNFAVIYLVDI 54 (114)
T ss_pred EEEEEEECCCChhHHHHHHH----HHHHHHHccCceEEEEEEC
Confidence 34556678999999999998 7777754444455666654
No 109
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=76 Score=22.77 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.0
Q ss_pred hcCCCCCCCHHHHHHHHHHHH
Q 029583 54 LLGVSVEANGQEIKEAYRKLQ 74 (191)
Q Consensus 54 iLgv~~~a~~~~Ik~ayr~l~ 74 (191)
+|-|+++|+..+||+|..++-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577899999999999988764
No 110
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=20.35 E-value=19 Score=24.63 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=25.5
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|+.++
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~----~~~~~~~~~~~~~~~~id 57 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPE----WKKAAKALKGIVKVGAVD 57 (103)
T ss_pred cEEEEEECCCCHHHHHHhHH----HHHHHHHhcCCceEEEEE
Confidence 35667788999999999887 777664433334444443
Done!