Query 029583
Match_columns 191
No_of_seqs 221 out of 1703
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 01:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvo_A CO-chaperone protein HS 99.8 9.6E-22 3.3E-26 159.5 7.5 98 17-114 8-117 (207)
2 2ctr_A DNAJ homolog subfamily 99.8 2.1E-21 7E-26 137.3 7.8 69 46-114 4-73 (88)
3 2yua_A Williams-beuren syndrom 99.8 1.6E-21 5.5E-26 140.8 6.7 74 43-116 11-86 (99)
4 2dn9_A DNAJ homolog subfamily 99.8 2E-21 6.7E-26 134.5 6.7 69 45-113 3-73 (79)
5 1wjz_A 1700030A21RIK protein; 99.8 1.4E-21 4.7E-26 139.5 6.1 70 46-115 13-90 (94)
6 2ej7_A HCG3 gene; HCG3 protein 99.8 3.1E-21 1.1E-25 134.4 7.5 68 46-113 6-76 (82)
7 2ctp_A DNAJ homolog subfamily 99.8 2E-21 6.9E-26 134.2 5.9 69 46-114 4-73 (78)
8 1hdj_A Human HSP40, HDJ-1; mol 99.8 5.5E-21 1.9E-25 131.7 7.1 66 48-113 2-68 (77)
9 2dmx_A DNAJ homolog subfamily 99.8 4.8E-21 1.6E-25 136.4 7.0 69 46-114 6-77 (92)
10 2cug_A Mkiaa0962 protein; DNAJ 99.8 7.5E-21 2.6E-25 134.4 7.6 69 46-114 14-83 (88)
11 2och_A Hypothetical protein DN 99.8 6.4E-21 2.2E-25 130.2 6.3 66 46-112 5-70 (73)
12 3apq_A DNAJ homolog subfamily 99.8 6.7E-21 2.3E-25 152.7 5.5 128 49-180 2-153 (210)
13 2o37_A Protein SIS1; HSP40, J- 99.8 1.3E-20 4.3E-25 134.3 6.2 68 46-114 5-72 (92)
14 2lgw_A DNAJ homolog subfamily 99.8 1.3E-20 4.3E-25 136.2 6.1 67 49-115 2-71 (99)
15 2ctq_A DNAJ homolog subfamily 99.8 3.2E-20 1.1E-24 136.8 6.5 69 46-114 17-87 (112)
16 2ctw_A DNAJ homolog subfamily 99.8 5.3E-20 1.8E-24 135.1 7.0 70 45-114 13-84 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.8 3.3E-20 1.1E-24 134.7 4.0 68 48-115 2-71 (103)
18 2l6l_A DNAJ homolog subfamily 99.8 9E-20 3.1E-24 141.4 5.9 71 46-116 7-85 (155)
19 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.5E-19 5.3E-24 132.4 4.6 69 47-115 13-87 (109)
20 2ys8_A RAB-related GTP-binding 99.8 6E-19 2E-23 125.2 5.6 62 47-108 25-87 (90)
21 2pf4_E Small T antigen; PP2A, 99.7 6.4E-20 2.2E-24 144.8 -1.7 66 47-114 9-76 (174)
22 1gh6_A Large T antigen; tumor 99.7 5.4E-19 1.9E-23 130.7 0.9 63 48-112 7-71 (114)
23 3hho_A CO-chaperone protein HS 99.7 3.1E-18 1.1E-22 135.3 5.1 67 48-114 3-78 (174)
24 1iur_A KIAA0730 protein; DNAJ 99.7 3.3E-18 1.1E-22 121.0 3.1 66 42-107 9-77 (88)
25 3lz8_A Putative chaperone DNAJ 99.7 9.2E-19 3.1E-23 150.9 0.0 69 46-114 25-94 (329)
26 3apo_A DNAJ homolog subfamily 99.7 7.2E-19 2.5E-23 165.0 -1.1 133 45-181 17-173 (780)
27 1faf_A Large T antigen; J doma 99.7 4.8E-18 1.6E-22 117.8 2.9 62 47-110 9-72 (79)
28 1fpo_A HSC20, chaperone protei 99.7 7.9E-18 2.7E-22 132.7 4.2 66 49-114 1-75 (171)
29 2guz_A Mitochondrial import in 99.7 1.3E-17 4.6E-22 113.2 4.1 62 44-107 9-71 (71)
30 3uo3_A J-type CO-chaperone JAC 99.7 2.1E-17 7.2E-22 131.3 3.7 67 46-113 8-81 (181)
31 1n4c_A Auxilin; four helix bun 99.6 3.4E-17 1.2E-21 129.9 3.0 61 49-109 117-182 (182)
32 2qwo_B Putative tyrosine-prote 99.6 1.1E-16 3.9E-21 113.9 2.9 54 49-102 33-91 (92)
33 3ag7_A Putative uncharacterize 99.6 1.2E-16 4.2E-21 116.6 2.3 58 47-105 39-105 (106)
34 2guz_B Mitochondrial import in 99.1 1.1E-10 3.6E-15 77.8 4.0 52 49-102 4-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 1.3E-10 4.5E-15 99.1 5.0 64 48-111 381-449 (450)
36 2pzi_A Probable serine/threoni 89.8 0.19 6.5E-06 46.0 3.3 47 47-99 627-675 (681)
37 2dml_A Protein disulfide-isome 35.7 7 0.00024 26.8 -0.2 39 138-180 36-74 (130)
38 3nm9_A HMG-D, high mobility gr 33.6 79 0.0027 19.7 4.8 39 67-111 15-53 (73)
39 2yj7_A LPBCA thioredoxin; oxid 38.7 9.4 0.00032 24.6 0.0 39 138-180 20-58 (106)
40 2djj_A PDI, protein disulfide- 31.4 5.1 0.00017 27.1 -1.6 39 138-180 26-69 (121)
41 1fo5_A Thioredoxin; disulfide 28.9 9.3 0.00032 23.8 -0.5 35 141-179 6-40 (85)
42 2voc_A Thioredoxin; electron t 28.2 8.9 0.0003 25.7 -0.8 38 139-180 19-56 (112)
43 1qqr_A Streptokinase domain B; 28.1 32 0.0011 25.3 2.2 34 49-82 32-65 (138)
44 2dj0_A Thioredoxin-related tra 28.1 9.5 0.00032 26.6 -0.6 38 139-180 28-66 (137)
45 1thx_A Thioredoxin, thioredoxi 27.9 6.7 0.00023 26.0 -1.4 39 138-180 26-64 (115)
46 1i11_A Transcription factor SO 27.0 94 0.0032 19.7 4.3 41 67-110 16-56 (81)
47 3die_A Thioredoxin, TRX; elect 26.9 5.8 0.0002 25.9 -1.9 38 139-180 21-58 (106)
48 1wmj_A Thioredoxin H-type; str 26.8 12 0.00042 25.3 -0.2 36 139-179 38-73 (130)
49 1nho_A Probable thioredoxin; b 26.6 9.2 0.00032 23.8 -0.9 36 140-179 4-39 (85)
50 4a3n_A Transcription factor SO 26.2 67 0.0023 19.7 3.4 41 67-111 14-54 (71)
51 3gnj_A Thioredoxin domain prot 26.0 6 0.0002 26.1 -2.0 39 138-180 23-61 (111)
52 1ilo_A Conserved hypothetical 25.4 9.7 0.00033 23.4 -0.9 35 142-180 4-38 (77)
53 3qou_A Protein YBBN; thioredox 24.9 12 0.00042 29.6 -0.6 39 138-180 27-65 (287)
54 3hxs_A Thioredoxin, TRXP; elec 24.5 8.7 0.0003 26.8 -1.4 38 138-179 52-89 (141)
55 2crj_A SWI/SNF-related matrix- 24.1 1.1E+02 0.0038 20.0 4.3 38 67-107 19-56 (92)
56 1hme_A High mobility group pro 24.0 1.4E+02 0.0047 18.6 4.9 38 67-107 18-55 (77)
57 1mek_A Protein disulfide isome 23.3 16 0.00055 24.1 -0.1 25 139-167 26-50 (120)
58 2o8v_B Thioredoxin 1; disulfid 23.2 8.2 0.00028 26.9 -1.8 39 138-180 41-79 (128)
59 3aps_A DNAJ homolog subfamily 23.0 6.8 0.00023 26.5 -2.2 39 138-180 22-60 (122)
60 3tco_A Thioredoxin (TRXA-1); d 23.0 7.3 0.00025 25.4 -2.0 38 139-180 23-60 (109)
61 1ug2_A 2610100B20RIK gene prod 22.6 46 0.0016 22.9 2.0 34 49-82 55-89 (95)
62 2lr8_A CAsp8-associated protei 28.1 18 0.00063 23.5 0.0 56 24-82 14-69 (70)
63 2d7l_A WD repeat and HMG-box D 22.3 65 0.0022 21.0 2.8 42 67-111 17-58 (81)
64 2yzu_A Thioredoxin; redox prot 22.1 8.4 0.00029 25.1 -1.8 38 139-180 20-57 (109)
65 1x5d_A Protein disulfide-isome 22.0 7.2 0.00025 26.7 -2.3 38 139-180 27-68 (133)
66 3qfa_C Thioredoxin; protein-pr 21.9 9.7 0.00033 25.9 -1.6 37 139-180 33-69 (116)
67 2trx_A Thioredoxin; electron t 21.9 8 0.00027 25.4 -2.0 38 139-180 22-59 (108)
68 3q6o_A Sulfhydryl oxidase 1; p 21.6 9.4 0.00032 29.7 -1.9 40 138-181 31-73 (244)
69 2lst_A Thioredoxin; structural 27.0 20 0.00068 24.4 0.0 20 139-158 21-40 (130)
70 1ep7_A Thioredoxin CH1, H-type 21.2 8.5 0.00029 25.5 -2.0 38 139-180 26-63 (112)
71 1nsw_A Thioredoxin, TRX; therm 21.1 8.5 0.00029 25.1 -2.0 37 139-179 19-55 (105)
72 3emx_A Thioredoxin; structural 20.7 11 0.00037 26.4 -1.5 37 139-181 33-69 (135)
73 2i4a_A Thioredoxin; acidophIle 20.6 7.8 0.00027 25.3 -2.2 39 138-180 21-59 (107)
74 3f27_D Transcription factor SO 20.1 1.1E+02 0.0038 19.4 3.6 41 67-111 18-58 (83)
No 1
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.85 E-value=9.6e-22 Score=159.48 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=81.6
Q ss_pred CCCCCccccccc---cccccceeccCCCCCCCCCccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc------
Q 029583 17 NPNKSSLRARWG---QRCSVIRCCNGRAGERASKKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQK------ 85 (191)
Q Consensus 17 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~------ 85 (191)
++...|+.|... .....++|..|...+++....|||+||||+++ ++.++||++||++++++|||+++..
T Consensus 8 ~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~ 87 (207)
T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKD 87 (207)
T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHH
T ss_pred CCCCCCCCCCCCcccccccccccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHH
Confidence 345566665543 45678999999999998888999999999986 7999999999999999999999753
Q ss_pred -hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 86 -GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 86 -~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+.+.|++|++||++|+||.+|+.||..+.
T Consensus 88 ~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~ 117 (207)
T 3bvo_A 88 FSEKHSTLVNDAYKTLLAPLSRGLYLLKLH 117 (207)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 24578999999999999999999997543
No 2
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=137.31 Aligned_cols=69 Identities=35% Similarity=0.575 Sum_probs=63.6
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456899999999999999999999999999999999985 457899999999999999999999999654
No 3
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-21 Score=140.79 Aligned_cols=74 Identities=31% Similarity=0.463 Sum_probs=65.9
Q ss_pred CCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 43 ERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 43 ~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
.......|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+...
T Consensus 11 ~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~ 86 (99)
T 2yua_A 11 DCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD 86 (99)
T ss_dssp CCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred CCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence 334567899999999999999999999999999999999964 46789999999999999999999999976543
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=134.53 Aligned_cols=69 Identities=45% Similarity=0.655 Sum_probs=63.3
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
.+...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..||.++
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 73 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYG 73 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSC
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhcc
Confidence 3456899999999999999999999999999999999974 46789999999999999999999999964
No 5
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.84 E-value=1.4e-21 Score=139.50 Aligned_cols=70 Identities=30% Similarity=0.542 Sum_probs=63.7
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--------chHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--------KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--------~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
....|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||..+..
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~ 90 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG 90 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence 456899999999999999999999999999999999862 3468999999999999999999999997654
No 6
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.1e-21 Score=134.44 Aligned_cols=68 Identities=38% Similarity=0.542 Sum_probs=62.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
....|||+||||+++++.++||++||++++++|||+++.. +++.|++|++||++|+||.+|..||..+
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g 76 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYG 76 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcC
Confidence 3467999999999999999999999999999999999753 4678999999999999999999999864
No 7
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=134.24 Aligned_cols=69 Identities=38% Similarity=0.594 Sum_probs=63.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+...|||+||||+++++.++||++|+++++++|||+++. .+.+.|+.|++||++|+||.+|..||..+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 456899999999999999999999999999999999975 467899999999999999999999999643
No 8
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=5.5e-21 Score=131.73 Aligned_cols=66 Identities=36% Similarity=0.548 Sum_probs=61.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
..|||+||||+++++.++||++|+++++++|||+++. .+.+.|+.|++||++|+||.+|..||..+
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~ 68 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYG 68 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 4699999999999999999999999999999999975 46789999999999999999999999964
No 9
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-21 Score=136.35 Aligned_cols=69 Identities=41% Similarity=0.619 Sum_probs=62.8
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
....|||+||||+++++.++||++||++++++|||+++. .+++.|++|++||++|+||.+|..||....
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 345799999999999999999999999999999999975 356899999999999999999999999644
No 10
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=7.5e-21 Score=134.42 Aligned_cols=69 Identities=30% Similarity=0.547 Sum_probs=63.4
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
....|||+||||+++++.++||++||++++++|||+++. .+++.|++|++||++|+||.+|..||....
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 346799999999999999999999999999999999975 467899999999999999999999999643
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.83 E-value=6.4e-21 Score=130.18 Aligned_cols=66 Identities=38% Similarity=0.648 Sum_probs=60.9
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhh
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 112 (191)
....|||+||||+++++.++||++|+++++++|||+++.. .+.|+.|++||++|+||.+|..||..
T Consensus 5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (73)
T 2och_A 5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-AEQFKQISQAYEVLSDEKKRQIYDQG 70 (73)
T ss_dssp -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC-HHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH-HHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 3567999999999999999999999999999999999743 68899999999999999999999985
No 12
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.82 E-value=6.7e-21 Score=152.73 Aligned_cols=128 Identities=27% Similarity=0.390 Sum_probs=91.7
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccCCCCCC
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFHFGTNASA 126 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~ 126 (191)
.|||+||||+++++.++||+|||++++++|||+++. .+.+.|+.|++||++|+||.+|+.||+.+........++...
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~~~~~ 81 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYE 81 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTCSCCCC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccccccccccc
Confidence 589999999999999999999999999999999963 467899999999999999999999999653321111111000
Q ss_pred C-----CCCCCCCCC-----------------CCCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 127 G-----FSRSSWKGP-----------------PRPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 127 ~-----~~~~~~~~~-----------------~~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
. ..++.+... -.+..+.+...+|..|....|. |.++.+.....+.|..|+
T Consensus 82 ~~~~~~~~fg~~~~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~----~~~l~~~~~~~v~~~~vd 153 (210)
T 3apq_A 82 SWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPT----WREFAKEVDGLLRIGAVN 153 (210)
T ss_dssp CHHHHHHSSSTTTTCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHH----HHHHHHHTBTTBEEEEEE
T ss_pred ccccccccccccCCCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHH----HHHHHHHhcCceEEEEEE
Confidence 0 011111111 1233456678999999999998 777774444446666665
No 13
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.3e-20 Score=134.34 Aligned_cols=68 Identities=40% Similarity=0.536 Sum_probs=62.2
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.+..|||+||||+++++.++||++||++++++|||+++.. .+.|++|++||++|+||.+|+.||.+..
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 72 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-TEKFKEISEAFEILNDPQKREIYDQYGL 72 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC-HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh-HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence 3568999999999999999999999999999999999643 5799999999999999999999998654
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=136.23 Aligned_cols=67 Identities=33% Similarity=0.511 Sum_probs=61.8
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
.|||+||||+++++.++||++||++++++|||+++.. +++.|++|++||++|+||.+|..||..+..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~ 71 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE 71 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence 5899999999999999999999999999999999753 568999999999999999999999997543
No 15
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=136.82 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=63.5
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
....|||+||||+++++.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|..||..+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 346899999999999999999999999999999999973 468899999999999999999999999754
No 16
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.3e-20 Score=135.07 Aligned_cols=70 Identities=30% Similarity=0.489 Sum_probs=63.5
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.....|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|+.||....
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 13 STSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp TSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 3456899999999999999999999999999999999975 357899999999999999999999998643
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.79 E-value=3.3e-20 Score=134.73 Aligned_cols=68 Identities=40% Similarity=0.636 Sum_probs=62.5
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
..|||+||||+++++.++||++||++++++|||+++. .+++.|++|++||++|+||.+|+.||..+..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 71 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA 71 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence 4699999999999999999999999999999999973 4678999999999999999999999996543
No 18
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=9e-20 Score=141.38 Aligned_cols=71 Identities=28% Similarity=0.516 Sum_probs=64.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHHHhcCCCchhhhhhhhccc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK--------GHEHTLLLNEAYKVLMRGDLRKDYDASIGQM 116 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~--------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~ 116 (191)
+...|||+||||+++++.++||+|||++++++|||+++.. +.+.|++|++||++|+||.+|+.||..+...
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~ 85 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED 85 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence 4567999999999999999999999999999999999754 3588999999999999999999999876543
No 19
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.77 E-value=1.5e-19 Score=132.37 Aligned_cols=69 Identities=29% Similarity=0.506 Sum_probs=63.0
Q ss_pred CccCchhhcCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHhcCCCchhhhhhhhcc
Q 029583 47 KKKNYYELLGVSVEA-NGQEIKEAYRKLQKKYHPDIAGQ-----KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQ 115 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~HPDk~~~-----~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~ 115 (191)
...|||+||||++++ +.++||+|||++++++|||+++. .+.+.|++|++||++|+||.+|+.||..+..
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 467999999999999 99999999999999999999974 2468999999999999999999999997653
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6e-19 Score=125.22 Aligned_cols=62 Identities=26% Similarity=0.367 Sum_probs=57.2
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhh
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKD 108 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~ 108 (191)
...|||+||||+++++.++||++||++++++|||+++. .+.+.|++|++||++|+||.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 35799999999999999999999999999999999975 567899999999999999998864
No 21
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.74 E-value=6.4e-20 Score=144.77 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=57.8
Q ss_pred CccCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 47 KKKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
...|||+||||+++|+ .++||+|||++++++|||++++ ++.|++|++||++|+||.+|+.||+...
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~--~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C--CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3479999999999998 6999999999999999999875 4889999999999999999999999653
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.72 E-value=5.4e-19 Score=130.74 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=59.1
Q ss_pred ccCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhh
Q 029583 48 KKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDAS 112 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~ 112 (191)
..+||+||||+++++. ++||+|||++++++|||+++. +++|++|++||++|+||.+|+.||.+
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~--~e~f~~I~~AYevL~d~~~R~~~~~~ 71 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD--EEKMKKMNTLYKKMEDGVKYAHQPDF 71 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT--TTTTHHHHHHHHHHHHHHHSCCSSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc--HHHHHHHHHHHHHHCCHHHHHHhhhc
Confidence 4689999999999998 999999999999999999875 58999999999999999999999974
No 23
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.72 E-value=3.1e-18 Score=135.34 Aligned_cols=67 Identities=30% Similarity=0.559 Sum_probs=60.5
Q ss_pred ccCchhhcCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 48 KKNYYELLGVSVEAN--GQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
..|||+||||+++++ .++||++||++++++|||+++.. +.+.|..|++||++|+||.+|..||..+.
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 78 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSLQ 78 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHcc
Confidence 579999999999887 99999999999999999998753 34789999999999999999999998754
No 24
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=3.3e-18 Score=121.03 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=58.6
Q ss_pred CCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHhcCCCchh
Q 029583 42 GERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK---GHEHTLLLNEAYKVLMRGDLRK 107 (191)
Q Consensus 42 ~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~---~~~~~~~I~~Ay~vL~d~~~R~ 107 (191)
........++|+||||+++++.++||+|||++++++|||+++.. +++.|++|++||++|+|...|.
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 34455668999999999999999999999999999999999863 5789999999999999987774
No 25
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.70 E-value=9.2e-19 Score=150.87 Aligned_cols=69 Identities=36% Similarity=0.603 Sum_probs=0.0
Q ss_pred CCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 46 SKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ-KGHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 46 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~-~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
+..+|||+||||+++|+.++||+|||+++++||||++++ .++++|++|++||++|+||.+|+.||++..
T Consensus 25 m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 94 (329)
T 3lz8_A 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ 94 (329)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence 455899999999999999999999999999999999875 467899999999999999999999999743
No 26
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.70 E-value=7.2e-19 Score=164.99 Aligned_cols=133 Identities=26% Similarity=0.363 Sum_probs=71.8
Q ss_pred CCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHHHhcCCCchhhhhhhhcccccc-cC
Q 029583 45 ASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ--KGHEHTLLLNEAYKVLMRGDLRKDYDASIGQMRFH-FG 121 (191)
Q Consensus 45 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~--~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~-~~ 121 (191)
.....|||+||||+++|+.++||+|||++++++|||+++. .++++|++|++||++|+||.+|+.||+.+...... .+
T Consensus 17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~~~ 96 (780)
T 3apo_A 17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQG 96 (780)
T ss_dssp ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC----------
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccCCC
Confidence 3456899999999999999999999999999999999863 46789999999999999999999999964322111 11
Q ss_pred CCCC----CCCCCCCCCCC-----------------CCCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 122 TNAS----AGFSRSSWKGP-----------------PRPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 122 ~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.... ....++.+.+. -.+..+.++..+|..|..+.|. |.++.+.....+.|+.||
T Consensus 97 ~~~~~~~~~~~~fg~~~~~~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~----~~~~a~~~~~~v~~~~vd 172 (780)
T 3apo_A 97 GQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPT----WREFAKEVDGLLRIGAVN 172 (780)
T ss_dssp -------CCSSSSSTTTTCTTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHH----HHHHHHHTTTTSEEEEEE
T ss_pred CCcccccccchhhcccCCCcceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHH----HHHHHHHhcCceEEEEEe
Confidence 0000 00011111111 1233556778999999999999 888875544457787776
Q ss_pred H
Q 029583 181 K 181 (191)
Q Consensus 181 ~ 181 (191)
.
T Consensus 173 ~ 173 (780)
T 3apo_A 173 C 173 (780)
T ss_dssp T
T ss_pred C
Confidence 4
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.70 E-value=4.8e-18 Score=117.84 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=56.3
Q ss_pred CccCchhhcCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhh
Q 029583 47 KKKNYYELLGVSVE--ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD 110 (191)
...++|+||||+++ ++.++||+|||++++++|||+++ +.+.|++|++||++|+|+.+|..++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~--~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG--SHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC--CHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC--CHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34689999999999 99999999999999999999986 4689999999999999999888743
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.69 E-value=7.9e-18 Score=132.67 Aligned_cols=66 Identities=24% Similarity=0.502 Sum_probs=59.9
Q ss_pred cCchhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHhcCCCchhhhhhhhc
Q 029583 49 KNYYELLGVSVEA--NGQEIKEAYRKLQKKYHPDIAGQK-------GHEHTLLLNEAYKVLMRGDLRKDYDASIG 114 (191)
Q Consensus 49 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPDk~~~~-------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~ 114 (191)
.|||+||||++++ +.++||++||++++++|||+++.. +.+.|+.|++||++|+||.+|..||..+.
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 3799999999999 999999999999999999998753 23689999999999999999999998754
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.3e-17 Score=113.24 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=54.9
Q ss_pred CCCCccCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchh
Q 029583 44 RASKKKNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107 (191)
Q Consensus 44 ~~~~~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~ 107 (191)
..+...++|+||||++ +++.++||++||++++++|||+++ +.+.|++|++||++|+|+..|+
T Consensus 9 ~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g--~~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 9 PKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGG--SPFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp SSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTC--CHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHhhhhhcC
Confidence 3455679999999999 799999999999999999999975 4579999999999999987763
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.67 E-value=2.1e-17 Score=131.35 Aligned_cols=67 Identities=31% Similarity=0.559 Sum_probs=61.0
Q ss_pred CCccCchhhc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhhhh
Q 029583 46 SKKKNYYELL------GVSV-EANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDASI 113 (191)
Q Consensus 46 ~~~~d~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~ 113 (191)
....|||+|| |+++ +++.++||++||++++++|||+++. +.+.|+.|++||++|+||.+|..||..+
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3457999999 4665 8999999999999999999999986 6788999999999999999999999976
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.65 E-value=3.4e-17 Score=129.92 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHhcCCCchhhh
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDY 109 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~I~~Ay~vL~d~~~R~~Y 109 (191)
.|+|+||||+++++.++||+|||++++++|||+++.. +++.|++|++||++|+||.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 6999999999999999999999999999999998743 568999999999999999999987
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.62 E-value=1.1e-16 Score=113.89 Aligned_cols=54 Identities=20% Similarity=0.288 Sum_probs=49.9
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHhcC
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMR 102 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~I~~Ay~vL~d 102 (191)
.++|++|||++.++.++||+|||++++++|||++++. +++.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999998753 56799999999999975
No 33
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.61 E-value=1.2e-16 Score=116.61 Aligned_cols=58 Identities=17% Similarity=0.237 Sum_probs=51.5
Q ss_pred CccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------chHHHHHHHHHHHHHhcCCCc
Q 029583 47 KKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQ---------KGHEHTLLLNEAYKVLMRGDL 105 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~---------~~~~~~~~I~~Ay~vL~d~~~ 105 (191)
...|||+|||++. |+.++||+|||++++++||||++. .+++.|+.|++||++|+|+..
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 3579999999996 999999999999999999999863 136899999999999999863
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=1.1e-10 Score=77.77 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=46.7
Q ss_pred cCchhhcCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcC
Q 029583 49 KNYYELLGVSVE---ANGQEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMR 102 (191)
Q Consensus 49 ~d~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d 102 (191)
.+.|.||||+++ ++.++|+++||+|+..+|||+++ +......|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG--S~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG--SFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHH
Confidence 467899999999 99999999999999999999986 44777899999999864
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.04 E-value=1.3e-10 Score=99.05 Aligned_cols=64 Identities=38% Similarity=0.638 Sum_probs=54.7
Q ss_pred ccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 48 KKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIAGQK-----GHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 48 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~~~~-----~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
..++|++||+.+.++.++|+++|+++++++|||+.+.. +++.|+.|++||++|+||++|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 35899999999999999999999999999999999753 46799999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=89.77 E-value=0.19 Score=45.99 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred CccCchhhcCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHH
Q 029583 47 KKKNYYELLGVSVEANG--QEIKEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKV 99 (191)
Q Consensus 47 ~~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~v 99 (191)
...|||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ------RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH------HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHhccc
Confidence 34569999999777655 77999999999976655 3677778888765
No 37
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.73 E-value=7 Score=26.81 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=26.3
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+..+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 36 ~~~lv~f~a~wC~~C~~~~~~----~~~~~~~~~~~~~~~~vd 74 (130)
T 2dml_A 36 GLWLVEFYAPWCGHCQRLTPE----WKKAATALKDVVKVGAVN 74 (130)
T ss_dssp SCEEEEEECTTCSTTGGGHHH----HHHHHHHTTTTSEEEEEE
T ss_pred CeEEEEEECCCCHHHHhhCHH----HHHHHHHhcCceEEEEEe
Confidence 345667788999999999998 766664333334555543
No 38
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=33.64 E-value=79 Score=19.71 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|..
T Consensus 15 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~---K~~y~~ 53 (73)
T 3nm9_A 15 LNSARESIKRENPGIK---VTEVAKRGGELWRAMKD---KSEWEA 53 (73)
T ss_dssp HHHHHHHHHHHSSSCC---HHHHHHHHHHHHHHCSC---CHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCc---hHHHHH
Confidence 4566777788899875 45777889999999987 666654
No 39
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=38.73 E-value=9.4 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=25.5
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
++-.+++...+|..|....+. |.++.+.....+.|..++
T Consensus 20 ~~~~v~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~v~ 58 (106)
T 2yj7_A 20 KPVLVDFWAPWCGPCRMIAPI----IEELAKEYEGKVKVVKVN 58 (106)
Confidence 345666778999999999887 666654433344454444
No 40
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=31.36 E-value=5.1 Score=27.09 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred CCCceEeecccccccccccccccccceeccccccc-----ccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHEL-----RFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~-----~~~~~~~~ 180 (191)
.+-.+.+...+|..|....|. |.++.+.... .+.|..|+
T Consensus 26 ~~vlv~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~~v~~~~vd 69 (121)
T 2djj_A 26 KDVLIEFYAPWCGHCKALAPK----YEELGALYAKSEFKDRVVIAKVD 69 (121)
T ss_dssp SCEEEEEECSSCTTHHHHHHH----HHHHHHHHTTSSCTTSSEEEEEE
T ss_pred CCEEEEEECCCCHhHHHhhHH----HHHHHHHHhhcccCCceEEEEEE
Confidence 455677788999999999998 7776643332 45565554
No 41
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=28.92 E-value=9.3 Score=23.81 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=22.0
Q ss_pred ceEeecccccccccccccccccceecccccccccceeeh
Q 029583 141 ALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTV 179 (191)
Q Consensus 141 ~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~ 179 (191)
.+.+...+|..|....+. +.++.+.....+.+..+
T Consensus 6 vv~f~~~~C~~C~~~~~~----l~~~~~~~~~~~~~~~v 40 (85)
T 1fo5_A 6 IELFTSPMCPHCPAAKRV----VEEVANEMPDAVEVEYI 40 (85)
T ss_dssp EEEEECCCSSCCCTHHHH----HHHHHHHCSSSEEEEEE
T ss_pred EEEEeCCCCCchHHHHHH----HHHHHHHcCCceEEEEE
Confidence 456678899999998887 66655333223444443
No 42
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=28.21 E-value=8.9 Score=25.71 Aligned_cols=38 Identities=11% Similarity=-0.018 Sum_probs=24.6
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 19 ~~lv~f~a~wC~~C~~~~~~----l~~~~~~~~~~v~~~~vd 56 (112)
T 2voc_A 19 VVLADFWAPWCGPSKMIAPV----LEELDQEMGDKLKIVKID 56 (112)
T ss_dssp EEEEEEECTTBGGGGGHHHH----HHHHHHHHTTTCEEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHH----HHHHHHHhCCCcEEEEEE
Confidence 34566778999999999887 666553332234555443
No 43
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=28.08 E-value=32 Score=25.34 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.3
Q ss_pred cCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029583 49 KNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA 82 (191)
Q Consensus 49 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 82 (191)
.-++..+.|....+.+|++++-..+..++|||=.
T Consensus 32 ~~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y~ 65 (138)
T 1qqr_A 32 TKLLKTLAIGDTITSQELLAQAQSILNKNHPGYT 65 (138)
T ss_dssp CEEEEEECTTCEEEHHHHHHHHHHHHHHHSTTEE
T ss_pred hhhhcccccCcccCHHHHHHHHHHHHHhcCCCcE
Confidence 3457788888889999999999999999999953
No 44
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.06 E-value=9.5 Score=26.64 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCceEeecccccccccccccccccceecccccc-cccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHE-LRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~-~~~~~~~~~ 180 (191)
+-.+.+...+|..|....|. |.++.+... -.+.|..|+
T Consensus 28 ~vlv~f~a~wC~~C~~~~p~----~~~l~~~~~~~~v~~~~vd 66 (137)
T 2dj0_A 28 TWIVEFFANWSNDCQSFAPI----YADLSLKYNCTGLNFGKVD 66 (137)
T ss_dssp CEEEEECCTTCSTTTTTHHH----HHHHHHHHCSSSCEEEECC
T ss_pred EEEEEEECCCCHHHHHHHHH----HHHHHHHhCCCCeEEEEEe
Confidence 44677788999999999998 777663332 245555554
No 45
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=27.95 E-value=6.7 Score=25.99 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=26.7
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+..+++...+|..|....+. |.++.+.....+.|..++
T Consensus 26 ~~~lv~f~~~~C~~C~~~~~~----l~~~~~~~~~~v~~~~v~ 64 (115)
T 1thx_A 26 QPVLVYFWASWCGPCQLMSPL----INLAANTYSDRLKVVKLE 64 (115)
T ss_dssp SCEEEEEECTTCTTHHHHHHH----HHHHHHHTTTTCEEEEEE
T ss_pred ceEEEEEECCCCHHHHHhHHH----HHHHHHHhCCcEEEEEEE
Confidence 345677788999999999888 766664443335555554
No 46
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=26.99 E-value=94 Score=19.74 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYD 110 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD 110 (191)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++...++
T Consensus 16 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 16 AKDERRKILQAFPDMH---NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHHTTCSSCC---HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 3556777777788864 4577789999999999766654434
No 47
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=26.88 E-value=5.8 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 21 ~~lv~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~v~ 58 (106)
T 3die_A 21 VQLVDFWATACGPCKMIAPV----LEELAADYEGKADILKLD 58 (106)
T ss_dssp EEEEEEECSBCHHHHHHHHH----HHHHHHHTTTTCEEEEEE
T ss_pred cEEEEEECCCCHHHHHHhHH----HHHHHHHhcCCcEEEEEE
Confidence 44667778999999999988 766664443334454444
No 48
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=26.83 E-value=12 Score=25.34 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=22.6
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeeh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTV 179 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~ 179 (191)
+-.+++...+|..|....+. |.++.+... .+.|..|
T Consensus 38 ~~vv~f~~~~C~~C~~~~~~----l~~~~~~~~-~v~~~~v 73 (130)
T 1wmj_A 38 VVIIDFTASWCGPCRFIAPV----FAEYAKKFP-GAVFLKV 73 (130)
T ss_dssp BCBEECCSSSCSCSSSSHHH----HHHHHHHCT-TBCCEEC
T ss_pred EEEEEEECCCChhHHHHHHH----HHHHHHHCC-CCEEEEE
Confidence 45566778899999988887 555553222 3444444
No 49
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=26.65 E-value=9.2 Score=23.82 Aligned_cols=36 Identities=6% Similarity=0.032 Sum_probs=22.2
Q ss_pred CceEeecccccccccccccccccceecccccccccceeeh
Q 029583 140 EALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTV 179 (191)
Q Consensus 140 ~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~ 179 (191)
..+.+...+|..|....+. +.++.+.....+.+..+
T Consensus 4 ~vv~f~~~~C~~C~~~~~~----l~~~~~~~~~~~~~~~v 39 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEV----VDEAKKEFGDKIDVEKI 39 (85)
T ss_dssp CEEEESCSSSCCSTTHHHH----HHHHHHHHCSSCCEEEE
T ss_pred EEEEEECCCCcchHHHHHH----HHHHHHHhcCCeEEEEE
Confidence 3456677899999998887 66554332223444444
No 50
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=26.20 E-value=67 Score=19.69 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++.. |..
T Consensus 14 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~-y~~ 54 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRP-FVE 54 (71)
T ss_dssp HHHHHHHHHTTCTTSC---HHHHHHHHHHHHHHSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 5567777888888875 4577788999999998765544 443
No 51
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=26.04 E-value=6 Score=26.13 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=26.8
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+-.+.+...+|..|....+. |.++.+.....+.|..++
T Consensus 23 ~~vlv~f~a~~C~~C~~~~~~----~~~~~~~~~~~v~~~~vd 61 (111)
T 3gnj_A 23 KACLVMFSRKNCHVCQKVTPV----LEELRLNYEESFGFYYVD 61 (111)
T ss_dssp CCEEEEEECSSCHHHHHHHHH----HHHHHHHTTTTSEEEEEE
T ss_pred CEEEEEEeCCCChhHHHHHHH----HHHHHHHcCCceEEEEEE
Confidence 445677788999999999888 777664443345555544
No 52
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=25.39 E-value=9.7 Score=23.38 Aligned_cols=35 Identities=3% Similarity=-0.029 Sum_probs=23.2
Q ss_pred eEeecccccccccccccccccceecccccccccceeehh
Q 029583 142 LFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 142 ~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+.+...+|..|....+. |.++.+.....+.+..++
T Consensus 4 v~f~a~wC~~C~~~~~~----l~~~~~~~~~~~~~~~v~ 38 (77)
T 1ilo_A 4 IQIYGTGCANCQMLEKN----AREAVKELGIDAEFEKIK 38 (77)
T ss_dssp EEEECSSSSTTHHHHHH----HHHHHHHTTCCEEEEEEC
T ss_pred EEEEcCCChhHHHHHHH----HHHHHHHcCCceEEEEec
Confidence 34556799999999888 666654444445555554
No 53
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=24.87 E-value=12 Score=29.56 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+-.+.+...||..|....|. |.++.+.....+.|..|+
T Consensus 27 ~~v~v~f~a~wC~~C~~~~p~----~~~~~~~~~~~~~~~~vd 65 (287)
T 3qou_A 27 TPVLFYFWSERSQHCLQLTPI----LESLAAQYNGQFILAKLD 65 (287)
T ss_dssp SCEEEEEECTTCTTTTTTHHH----HHHHHHHHTSSSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHH----HHHHHHHcCCCeEEEEEe
Confidence 345667778999999999998 777764444345555554
No 54
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=24.46 E-value=8.7 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=25.4
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeeh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTV 179 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~ 179 (191)
.+-.+.+...+|..|....+. |.++.+.....+.|..|
T Consensus 52 k~vlv~f~a~wC~~C~~~~~~----~~~~~~~~~~~~~~~~v 89 (141)
T 3hxs_A 52 KPAIVDFYADWCGPCKMVAPI----LEELSKEYAGKIYIYKV 89 (141)
T ss_dssp SCEEEEEECTTCTTHHHHHHH----HHHHHHHTTTTCEEEEE
T ss_pred CEEEEEEECCCCHHHHHHHHH----HHHHHHHhcCceEEEEE
Confidence 455667788999999999988 66666433333444443
No 55
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=24.05 E-value=1.1e+02 Score=20.03 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~ 107 (191)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 19 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2crj_A 19 LNERREQIRTRHPDLP---FPEITKMLGAEWSKLQPAEKQR 56 (92)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHTCCTTHHHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Confidence 3556777778899864 4577788999999999776644
No 56
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=24.00 E-value=1.4e+02 Score=18.62 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRK 107 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~ 107 (191)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS---IGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHHCTTCC---HHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHHhCCHHHHHH
Confidence 3556666777799854 4577789999999999766554
No 57
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=23.30 E-value=16 Score=24.06 Aligned_cols=25 Identities=12% Similarity=-0.068 Sum_probs=19.2
Q ss_pred CCceEeecccccccccccccccccceecc
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLP 167 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~ 167 (191)
+-.+++...+|..|....+. |.++.
T Consensus 26 ~~lv~f~~~~C~~C~~~~~~----~~~~~ 50 (120)
T 1mek_A 26 YLLVEFYAPWCGHCKALAPE----YAKAA 50 (120)
T ss_dssp EEEEEEECSSCSTTSTTHHH----HHHHH
T ss_pred eEEEEEECCCCHHHHHhhHH----HHHHH
Confidence 44567778999999999887 66655
No 58
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=23.21 E-value=8.2 Score=26.93 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=25.8
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+-.+++...+|..|....+. |.++.+.....+.|..|+
T Consensus 41 k~vlv~F~a~wC~~C~~~~p~----l~~l~~~~~~~v~~~~vd 79 (128)
T 2o8v_B 41 GAILVDFWAEWCGPAKMIAPI----LDEIADEYQGKLTVAKLN 79 (128)
T ss_dssp SEEEEEEECSSCHHHHHTHHH----HHHHHHHTTTTEEEEEEE
T ss_pred CEEEEEEECCCCHHHHHHhHH----HHHHHHHhcCCeEEEEEE
Confidence 344667788999999999887 666654333335555554
No 59
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=23.04 E-value=6.8 Score=26.53 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=26.8
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+..+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 22 ~~~lv~f~a~~C~~C~~~~~~----~~~~~~~~~~~~~~~~vd 60 (122)
T 3aps_A 22 THWVVDFYAPWCGPCQNFAPE----FELLARMIKGKVRAGKVD 60 (122)
T ss_dssp SCEEEEEECTTCHHHHHHHHH----HHHHHHHHTTTCEEEEEE
T ss_pred CeEEEEEECCCCHHHHHHHHH----HHHHHHHhcCCeEEEEEe
Confidence 345677788999999999998 776664433345555554
No 60
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=23.03 E-value=7.3 Score=25.44 Aligned_cols=38 Identities=11% Similarity=0.084 Sum_probs=25.3
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|..++
T Consensus 23 ~~lv~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~v~ 60 (109)
T 3tco_A 23 LVLVDCWAEWCAPCHLYEPI----YKKVAEKYKGKAVFGRLN 60 (109)
T ss_dssp EEEEEEECTTCHHHHHHHHH----HHHHHHHTTTTSEEEEEE
T ss_pred eEEEEEECCCCHHHHhhhHH----HHHHHHHhCCCceEEEEc
Confidence 34566778999999999887 766664443344454443
No 61
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=22.57 E-value=46 Score=22.87 Aligned_cols=34 Identities=12% Similarity=0.366 Sum_probs=24.0
Q ss_pred cCchhhcCCCC-CCCHHHHHHHHHHHHHHhCCCCC
Q 029583 49 KNYYELLGVSV-EANGQEIKEAYRKLQKKYHPDIA 82 (191)
Q Consensus 49 ~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~HPDk~ 82 (191)
.+-|..|--.- +-+.++|+.+|++|++.+|-...
T Consensus 55 ~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 55 PHTFSVISQQLGNKTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp TTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHhc
Confidence 34454433222 57899999999999999986553
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=28.12 E-value=18 Score=23.54 Aligned_cols=56 Identities=11% Similarity=0.246 Sum_probs=35.7
Q ss_pred ccccccccccceeccCCCCCCCCCccCchhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC
Q 029583 24 RARWGQRCSVIRCCNGRAGERASKKKNYYELLGVSVEANGQEIKEAYRKLQKKYHPDIA 82 (191)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~HPDk~ 82 (191)
.-.|.-.+.++-...|... +...+-|..|--.-+-++++|+.+|++|++.+|-.|.
T Consensus 14 vvlWTReeDR~IL~~cq~~---G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKR---GPSSKTFAYLAAKLDKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 3456666666666666322 2223445554433367889999999999999886653
No 63
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.31 E-value=65 Score=21.01 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
-+.+|...+.-||+.. ...+..+.|.+.|..|++.++.. |..
T Consensus 17 ~~e~R~~ik~~~P~~~--~~~eisK~lge~Wk~ls~eeK~~-y~~ 58 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS--DEADIIKEGMIRFRVLSTEERKV-WAN 58 (81)
T ss_dssp HHHHHHHHHHHCTTCC--SHHHHHHHHHHHHSSSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHCCCCc--hhHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 4567788888999975 24577889999999999766655 544
No 64
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=22.09 E-value=8.4 Score=25.08 Aligned_cols=38 Identities=8% Similarity=0.025 Sum_probs=24.4
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+++...+|..|....+. |.++.+.....+.|..|+
T Consensus 20 ~~lv~f~~~~C~~C~~~~~~----l~~~~~~~~~~~~~~~v~ 57 (109)
T 2yzu_A 20 LVLVDFWAEWCAPCRMIAPI----LEEIAKEYEGKLLVAKLD 57 (109)
T ss_dssp EEEEEEECTTCHHHHHHHHH----HHHHHHHTBTTBEEEEEE
T ss_pred eEEEEEECCCCHHHHHhhHH----HHHHHHHhhCceEEEEEE
Confidence 34566778999999998887 666653333334555444
No 65
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.00 E-value=7.2 Score=26.72 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=25.9
Q ss_pred CCceEeecccccccccccccccccceecccccc----cccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHE----LRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~----~~~~~~~~~ 180 (191)
+-.+.+...+|..|..+.+. |.++.+... ..+.|..|+
T Consensus 27 ~~lv~f~a~wC~~C~~~~~~----~~~~~~~~~~~~~~~~~~~~vd 68 (133)
T 1x5d_A 27 VWMVEFYAPWCGHCKNLEPE----WAAAASEVKEQTKGKVKLAAVD 68 (133)
T ss_dssp EEEEEEECTTCHHHHTHHHH----HHHHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEECCCCHHHHhhcHH----HHHHHHHHHhhcCCcEEEEEEE
Confidence 45667788999999999988 766663332 335555554
No 66
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=21.88 E-value=9.7 Score=25.86 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=24.6
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.... +.|..|+
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~----l~~l~~~~~~-v~~~~vd 69 (116)
T 3qfa_C 33 LVVVDFSATWCGPSKMIKPF----FHSLSEKYSN-VIFLEVD 69 (116)
T ss_dssp CEEEEEECTTCHHHHHHHHH----HHHHHTTCTT-SEEEEEE
T ss_pred EEEEEEECCCCHHHHHHHHH----HHHHHHHCCC-CEEEEEE
Confidence 44566778999999999988 6666643322 4554443
No 67
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=21.86 E-value=8 Score=25.40 Aligned_cols=38 Identities=8% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 22 ~~~v~f~~~~C~~C~~~~~~----l~~~~~~~~~~~~~~~v~ 59 (108)
T 2trx_A 22 AILVDFWAEWCGPCKMIAPI----LDEIADEYQGKLTVAKLN 59 (108)
T ss_dssp EEEEEEECTTCHHHHHHHHH----HHHHHHHTTTTEEEEEEE
T ss_pred eEEEEEECCCCHhHHHHHHH----HHHHHHHhCCCcEEEEEE
Confidence 44567778999999999887 666654333335555543
No 68
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=21.60 E-value=9.4 Score=29.68 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCCceEeecccccccccccccccccceeccccccc---ccceeehhH
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHEL---RFNMGTVTK 181 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~---~~~~~~~~~ 181 (191)
.+..+.+...||..|..+.|. |.++.+.... .+.|..|+.
T Consensus 31 ~~vlv~F~a~wC~~C~~~~p~----~~~l~~~~~~~~~~v~~~~vd~ 73 (244)
T 3q6o_A 31 SAWAVEFFASWCGHCIAFAPT----WXALAEDVKAWRPALYLAALDC 73 (244)
T ss_dssp SEEEEEEECTTCHHHHHHHHH----HHHHHHHTGGGTTTEEEEEEET
T ss_pred CeEEEEEECCcCHHHHHHHHH----HHHHHHHHHhccCcEEEEEEeC
Confidence 445677889999999999999 8888754443 566766663
No 69
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=26.97 E-value=20 Score=24.42 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=15.7
Q ss_pred CCceEeeccccccccccccc
Q 029583 139 PEALFVDENACIENVYTMPV 158 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~ 158 (191)
+-.+.+...+|..|..+.+.
T Consensus 21 ~vlv~f~a~wC~~C~~~~~~ 40 (130)
T 2lst_A 21 MVMVYFHSEHCPYCQQMNTF 40 (130)
Confidence 44566678999999998887
No 70
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=21.23 E-value=8.5 Score=25.46 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=24.8
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
+-.+.+...+|..|....+. |.++.+.....+.|..|+
T Consensus 26 ~~vv~f~~~~C~~C~~~~~~----l~~~~~~~~~~~~~~~vd 63 (112)
T 1ep7_A 26 PIVVDFTATWCGPCKMIAPL----FETLSNDYAGKVIFLKVD 63 (112)
T ss_dssp CEEEEEECTTCHHHHHHHHH----HHHHHHHTTTTSEEEEEE
T ss_pred eEEEEEECCCCHHHHHHHHH----HHHHHHHcCCCeEEEEEE
Confidence 34566778899999999887 666653333245555543
No 71
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=21.07 E-value=8.5 Score=25.10 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=24.3
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeeh
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTV 179 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~ 179 (191)
+-.+++...+|..|....+. |.++.+.....+.+..+
T Consensus 19 ~~~v~f~~~~C~~C~~~~~~----l~~~~~~~~~~v~~~~v 55 (105)
T 1nsw_A 19 PVLVDFWAAWCGPCRMMAPV----LEEFAEAHADKVTVAKL 55 (105)
T ss_dssp CEEEEEECTTCHHHHHHHHH----HHHHHHHSTTTCEEEEE
T ss_pred cEEEEEECCCCHHHHHHHHH----HHHHHHHhcCCcEEEEE
Confidence 45667778999999999887 66665333323444444
No 72
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=20.69 E-value=11 Score=26.39 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=26.5
Q ss_pred CCceEeecccccccccccccccccceecccccccccceeehhH
Q 029583 139 PEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVTK 181 (191)
Q Consensus 139 ~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~~ 181 (191)
+-.+.+...+|..|....|. |.++.+... +.|..|+.
T Consensus 33 ~vlv~F~a~wC~~C~~~~p~----l~~l~~~~~--v~~~~vd~ 69 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDWPQ----LIQASKEVD--VPIVMFIW 69 (135)
T ss_dssp SEEEEEEETTCHHHHHHHHH----HHHHHTTCC--SCEEEEEE
T ss_pred cEEEEEECCcCHhhhHhChh----HHHHHHHCC--CEEEEEEC
Confidence 45667778999999999998 777764443 55555543
No 73
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=20.65 E-value=7.8 Score=25.27 Aligned_cols=39 Identities=8% Similarity=-0.072 Sum_probs=25.4
Q ss_pred CCCceEeecccccccccccccccccceecccccccccceeehh
Q 029583 138 RPEALFVDENACIENVYTMPVTHLLWMKLPDVHELRFNMGTVT 180 (191)
Q Consensus 138 ~~~~~~~~~~~c~gc~~~~~~~~~~w~~l~~~~~~~~~~~~~~ 180 (191)
.+-.+.+...+|..|....+. |.++.+.....+.|..++
T Consensus 21 ~~~lv~f~~~~C~~C~~~~~~----~~~~~~~~~~~~~~~~v~ 59 (107)
T 2i4a_A 21 GLVLVDFWAEWCGPCKMIGPA----LGEIGKEFAGKVTVAKVN 59 (107)
T ss_dssp SEEEEEEECTTCHHHHHHHHH----HHHHHHHHTTSEEEEEEE
T ss_pred CEEEEEEECCCChhHHHHhHH----HHHHHHHhCCcEEEEEEE
Confidence 345667778999999999887 666653333345555543
No 74
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=20.05 E-value=1.1e+02 Score=19.38 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhcCCCchhhhhh
Q 029583 67 KEAYRKLQKKYHPDIAGQKGHEHTLLLNEAYKVLMRGDLRKDYDA 111 (191)
Q Consensus 67 k~ayr~l~~~~HPDk~~~~~~~~~~~I~~Ay~vL~d~~~R~~YD~ 111 (191)
.+.+|..++.-||+.. ..+..+.|.+.|..|++.++.. |..
T Consensus 18 ~~~~r~~~~~~~p~~~---~~eisk~lg~~Wk~ls~~eK~~-y~~ 58 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH---NAELSKMLGKSWKALTLAEKRP-FVE 58 (83)
T ss_dssp HHHHHHHHHHHCSSSC---HHHHHHHHHHHHHHSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHCCCCC---HHHHHHHHHHHHhcCCHHHHHH-HHH
Confidence 4567778888899875 4577788999999998665544 443
Done!