Query 029584
Match_columns 191
No_of_seqs 115 out of 1105
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 01:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_A 20S proteasome; multica 100.0 2.7E-46 9.1E-51 298.6 23.1 188 2-191 51-243 (243)
2 1iru_A 20S proteasome; cell cy 100.0 1E-45 3.4E-50 295.7 23.5 190 2-191 57-246 (246)
3 1iru_B 20S proteasome; cell cy 100.0 3.7E-44 1.3E-48 284.5 23.2 182 2-188 52-233 (233)
4 1ryp_C 20S proteasome; multica 100.0 1.2E-43 4.2E-48 283.3 24.7 185 2-188 52-242 (244)
5 1iru_C 20S proteasome; cell cy 100.0 1.4E-43 4.9E-48 285.5 23.8 186 3-190 53-243 (261)
6 1yar_A Proteasome alpha subuni 100.0 1.5E-43 5.2E-48 281.0 22.5 179 2-184 55-233 (233)
7 3h4p_A Proteasome subunit alph 100.0 2.1E-44 7.1E-49 290.6 17.2 183 2-188 59-241 (264)
8 1ryp_D 20S proteasome; multica 100.0 3.2E-43 1.1E-47 280.4 23.8 184 3-189 50-236 (241)
9 1ryp_E 20S proteasome; multica 100.0 7E-44 2.4E-48 284.4 19.8 186 2-190 47-238 (242)
10 3h4p_a Proteasome subunit beta 100.0 1.5E-43 5.2E-48 278.6 20.7 178 4-189 25-204 (219)
11 1iru_D 20S proteasome; cell cy 100.0 2E-43 6.7E-48 282.8 20.5 184 2-190 50-235 (248)
12 1iru_G 20S proteasome; cell cy 100.0 5.4E-43 1.9E-47 281.1 21.9 185 2-188 54-240 (254)
13 1j2q_H Proteasome beta subunit 100.0 9.8E-43 3.4E-47 270.7 22.2 176 4-188 24-201 (202)
14 1j2p_A Alpha-ring, proteasome 100.0 1.7E-42 5.9E-47 277.0 23.3 181 2-188 55-237 (246)
15 1iru_F 20S proteasome; cell cy 100.0 8E-43 2.8E-47 281.4 20.4 178 9-188 58-237 (263)
16 1ryp_B 20S proteasome; multica 100.0 2.4E-42 8.4E-47 276.7 22.7 184 2-187 52-250 (250)
17 1iru_E 20S proteasome; cell cy 100.0 1.5E-42 5E-47 276.6 20.6 182 2-187 55-241 (241)
18 3mi0_A Proteasome subunit alph 100.0 3.7E-42 1.3E-46 274.9 22.5 177 8-188 47-238 (248)
19 1q5q_H Proteasome beta-type su 100.0 4.6E-42 1.6E-46 272.8 22.5 182 3-189 23-219 (235)
20 1yar_H Proteasome beta subunit 100.0 7.4E-42 2.5E-46 268.6 23.1 176 4-188 32-208 (217)
21 1ryp_F 20S proteasome; multica 100.0 1.4E-42 4.9E-47 275.4 18.1 173 9-184 57-233 (233)
22 1ryp_L 20S proteasome; multica 100.0 2.7E-42 9.3E-47 270.2 19.1 178 4-189 24-202 (212)
23 3nzj_F Proteasome component C1 100.0 2.5E-41 8.7E-46 275.2 23.4 181 2-183 55-239 (288)
24 1iru_L 20S proteasome; cell cy 100.0 8.1E-42 2.8E-46 265.9 19.5 176 4-188 24-200 (204)
25 1ryp_G 20S proteasome; multica 100.0 2.9E-41 9.8E-46 269.6 23.0 184 2-188 51-239 (244)
26 1iru_H 20S proteasome; cell cy 100.0 1.5E-42 5.1E-47 270.3 15.1 175 5-186 25-200 (205)
27 3nzj_K Proteasome component PR 100.0 3.4E-41 1.1E-45 274.4 18.8 179 3-189 98-277 (287)
28 1q5r_H Proteasome beta-type su 100.0 1.9E-40 6.5E-45 270.8 23.2 182 3-189 88-284 (294)
29 1iru_N 20S proteasome; cell cy 100.0 2.9E-41 9.9E-46 265.5 16.5 177 3-184 31-209 (219)
30 1q5q_A Proteasome alpha-type s 100.0 2E-40 6.8E-45 266.8 19.6 178 8-189 47-237 (259)
31 1ryp_K 20S proteasome; multica 100.0 5E-40 1.7E-44 254.7 20.3 167 5-177 26-194 (198)
32 1ryp_N 20S proteasome; multica 100.0 3.8E-41 1.3E-45 267.2 14.0 178 3-183 31-217 (233)
33 2jay_A Proteasome; hydrolase; 100.0 7E-40 2.4E-44 267.2 20.7 181 4-189 81-276 (291)
34 3unf_H Proteasome subunit beta 100.0 8.4E-40 2.9E-44 259.5 17.9 168 5-182 25-193 (234)
35 3unf_N Proteasome subunit beta 100.0 3.1E-40 1E-44 256.1 14.5 172 4-184 24-197 (199)
36 1iru_M 20S proteasome; cell cy 100.0 4.5E-39 1.6E-43 252.0 20.6 161 6-170 35-203 (213)
37 1iru_K 20S proteasome; cell cy 100.0 4.1E-39 1.4E-43 250.1 19.2 168 4-177 25-193 (201)
38 1g0u_M Proteasome component PR 100.0 8.8E-40 3E-44 264.0 14.6 178 3-183 64-250 (266)
39 1ryp_M 20S proteasome; multica 100.0 1.5E-38 5.2E-43 250.6 20.6 161 6-170 35-212 (222)
40 1ryp_I 20S proteasome; multica 100.0 2.3E-38 7.9E-43 249.5 20.6 164 5-177 25-189 (222)
41 1ryp_H 20S proteasome; multica 100.0 2.8E-38 9.5E-43 246.2 19.7 163 5-175 34-197 (205)
42 1iru_J 20S proteasome; cell cy 100.0 4.2E-38 1.4E-42 245.1 20.2 163 8-176 36-201 (205)
43 3nzj_H Proteasome component PU 100.0 6.5E-38 2.2E-42 252.1 20.8 165 4-177 53-218 (261)
44 1ryp_J 20S proteasome; multica 100.0 1.4E-37 4.7E-42 242.0 21.4 161 8-175 36-199 (204)
45 1iru_I 20S proteasome; cell cy 100.0 4.2E-37 1.4E-41 244.1 20.5 163 6-178 26-189 (234)
46 1m4y_A ATP-dependent protease 100.0 2.1E-30 7.3E-35 196.3 15.8 144 4-165 24-171 (171)
47 2z3b_A ATP-dependent protease 100.0 4.1E-30 1.4E-34 196.3 15.7 145 4-165 29-179 (180)
48 1g3k_A ATP-dependent protease 100.0 4.1E-30 1.4E-34 195.3 15.5 145 4-166 24-173 (174)
49 2hc5_A ORF 99, hypothetical pr 75.1 7.6 0.00026 26.6 5.7 32 157-188 66-98 (117)
50 1vd2_A Protein kinase C, IOTA 72.0 11 0.00039 24.4 5.7 53 131-188 23-75 (89)
51 1yo5_C SAM pointed domain cont 51.9 22 0.00076 23.4 4.2 26 162-187 31-56 (97)
52 2dao_A Transcription factor ET 46.2 26 0.00087 24.0 3.9 27 161-187 27-53 (118)
53 3jtg_A ETS-related transcripti 39.8 43 0.0015 22.3 4.2 26 162-187 25-50 (103)
54 4eo3_A Bacterioferritin comigr 37.1 18 0.0006 29.0 2.3 45 94-140 103-148 (322)
55 1wwx_A E74-like factor 5 ESE-2 35.5 35 0.0012 22.9 3.2 26 162-187 29-54 (107)
56 3fpw_A HBPS, extracellular HAE 32.7 72 0.0025 23.6 4.9 37 131-170 62-98 (192)
57 2kxe_A DNA polymerase II small 32.3 66 0.0023 19.6 3.7 27 118-145 20-46 (75)
58 1ixs_A Holliday junction DNA h 32.2 29 0.00099 20.7 2.2 36 110-145 24-59 (62)
59 4asv_A Small glutamine-rich te 29.9 1.1E+02 0.0039 19.8 4.9 35 119-154 25-61 (92)
60 2a2l_A Unknown; structural gen 27.5 51 0.0017 23.1 3.2 36 132-170 10-45 (145)
61 3a1q_C Ubiquitin interaction m 27.5 47 0.0016 18.1 2.2 14 132-145 2-15 (45)
62 3kol_A Oxidoreductase, glyoxal 26.5 81 0.0028 20.8 4.1 21 92-112 132-152 (156)
63 1eik_A RNA polymerase subunit 26.1 59 0.002 20.4 2.9 21 170-190 12-32 (77)
64 1j6x_A Autoinducer-2 productio 25.5 1.8E+02 0.006 20.9 5.7 54 96-149 72-143 (160)
65 1oey_J P40-PHOX, neutrophil cy 25.4 1.5E+02 0.0052 19.6 5.6 45 134-186 33-77 (107)
66 4gof_A Small glutamine-rich te 25.2 67 0.0023 18.5 2.8 36 119-155 8-45 (52)
67 2kwp_A Transcription elongatio 25.1 1.7E+02 0.0056 20.0 5.4 41 132-173 16-57 (129)
68 1hmj_A RPB5, protein (subunit 24.4 52 0.0018 20.7 2.4 21 170-190 10-30 (78)
69 1hbx_G ETS-domain protein ELK- 24.0 73 0.0025 22.8 3.4 25 162-187 25-49 (157)
70 2lxb_A Small glutamine-rich te 23.6 1.4E+02 0.0047 18.5 4.9 36 119-155 13-50 (74)
71 2gdt_A Leader protein; P65 hom 23.0 62 0.0021 21.6 2.6 19 133-151 21-39 (116)
72 4ayb_H DNA-directed RNA polyme 22.3 71 0.0024 20.3 2.8 20 170-189 18-37 (84)
73 1j98_A Autoinducer-2 productio 21.9 2.1E+02 0.0071 20.4 5.5 57 94-150 74-148 (157)
74 2ztd_A Holliday junction ATP-d 20.5 1.1E+02 0.0038 22.9 4.0 38 111-148 172-209 (212)
75 3gl3_A Putative thiol:disulfid 20.3 1.5E+02 0.0052 19.4 4.6 37 92-128 105-141 (152)
No 1
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2.7e-46 Score=298.60 Aligned_cols=188 Identities=47% Similarity=0.776 Sum_probs=177.9
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++|+.+++++||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|
T Consensus 51 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v 130 (243)
T 1ryp_A 51 PDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGV 130 (243)
T ss_dssp CCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSC
T ss_pred CccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccce
Confidence 46888899999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHhhhcccCC
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP-----AFTFQETVQTAISTLQSVLQEDFK 156 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~-----~~s~eea~~l~~~~l~~~~~~d~~ 156 (191)
++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|++.+ +||++||++++++||..+.+||..
T Consensus 131 ~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s 210 (243)
T 1ryp_A 131 ILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFS 210 (243)
T ss_dssp EEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCC
T ss_pred EEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCC
Confidence 999999997678999999999999999999999999999999999996311 899999999999999999999954
Q ss_pred CCeEEEEEEEeCCCcEEEcCHHHHHHHHHHhhccC
Q 029584 157 ASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 191 (191)
Q Consensus 157 ~~~iei~iv~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (191)
..+++|++|++++ |++++++||++++.++.++|
T Consensus 211 ~~~iev~vi~~~g--~~~l~~~ei~~~~~~~~~~~ 243 (243)
T 1ryp_A 211 KNDLEVGVATKDK--FFTLSAENIEERLVAIAEQD 243 (243)
T ss_dssp TTSEEEEEEETTE--EEECCHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEEECCC--eEECCHHHHHHHHHHhhccC
Confidence 4599999999986 99999999999999999887
No 2
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1e-45 Score=295.73 Aligned_cols=190 Identities=61% Similarity=0.967 Sum_probs=178.0
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++.+++++||++|++|++|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++.++|||+|
T Consensus 57 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v 136 (246)
T 1iru_A 57 PDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGC 136 (246)
T ss_dssp CCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSE
T ss_pred CCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcce
Confidence 35788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCCeEE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIE 161 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~ie 161 (191)
++||||||+++||+||.+||+|++.+++++|+|+|++.++++||++|++.++||++||++++++||..+.+||....+++
T Consensus 137 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~ 216 (246)
T 1iru_A 137 CMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIE 216 (246)
T ss_dssp EEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEE
T ss_pred EEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEE
Confidence 99999999767899999999999999999999999999999999999533399999999999999999999994434899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhhccC
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAISERD 191 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (191)
|++|+++++.|++++++||++++.++.++|
T Consensus 217 v~vi~~~g~~~~~l~~~ei~~~~~~~~~~~ 246 (246)
T 1iru_A 217 VGVVTVENPKFRILTEAEIDAHLVALAERD 246 (246)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHHHHHTC-
T ss_pred EEEEECCCCeEEECCHHHHHHHHHHhhccC
Confidence 999999876699999999999999999887
No 3
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3.7e-44 Score=284.53 Aligned_cols=182 Identities=35% Similarity=0.562 Sum_probs=172.9
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|
T Consensus 52 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v 131 (233)
T 1iru_B 52 KSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGV 131 (233)
T ss_dssp CCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSE
T ss_pred CccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEE
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCCeEE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIE 161 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~ie 161 (191)
++||||||+ +||+||.+||+|++.++++.|+|+|++.++++||++|+ ++||++||++++++||..+.++|....+++
T Consensus 132 ~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d~sg~~i~ 208 (233)
T 1iru_B 132 SLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN--EDLELEDAIHTAILTLKESFEGQMTEDNIE 208 (233)
T ss_dssp EEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHTTCCSCCCSSSEE
T ss_pred EEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 999999995 78999999999999999999999999999999999984 789999999999999999999996545999
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
|++|++++ |++++++||++++.+++
T Consensus 209 v~vi~~~g--~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 209 VGICNEAG--FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp EEEEETTE--EEECCHHHHHHHHTTCC
T ss_pred EEEEECCC--EEECCHHHHHHHHHhcC
Confidence 99999986 99999999999998763
No 4
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.2e-43 Score=283.29 Aligned_cols=185 Identities=26% Similarity=0.494 Sum_probs=173.6
Q ss_pred CCcccc-CCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccc
Q 029584 2 QDKLLD-HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 80 (191)
Q Consensus 2 ~s~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~ 80 (191)
.++++. +++++||++|++|++|++||..+|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||+
T Consensus 52 ~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~ 131 (244)
T 1ryp_C 52 TSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFG 131 (244)
T ss_dssp CCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCC
T ss_pred CCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceE
Confidence 356666 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcc-cCCCCe
Q 029584 81 VVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQE-DFKASE 159 (191)
Q Consensus 81 v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~-d~~~~~ 159 (191)
|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||++|+ ++||++||++++++||..+.+| +....+
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~rd~~sg~~ 209 (244)
T 1ryp_C 132 VSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK--DDMKVDDAIELALKTLSKTTDSSALTYDR 209 (244)
T ss_dssp EEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSSSCCGGG
T ss_pred EEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHhccccCCCCc
Confidence 9999999994478999999999999999999999999999999999984 7899999999999999999999 554348
Q ss_pred EEEEEEE--eCCCc--EEEcCHHHHHHHHHHhh
Q 029584 160 IEVGVVS--KENPE--FRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 160 iei~iv~--~~~~~--~~~~~~~~i~~~~~~~~ 188 (191)
++|++|+ +++++ |+.++++||++++.++.
T Consensus 210 i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 210 LEFATIRKGANDGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp EEEEEEECCSSSSSCEEEECCHHHHHHHHHHHT
T ss_pred EEEEEEEeecCCCceeEEECCHHHHHHHHHHhh
Confidence 9999999 98865 99999999999999875
No 5
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.4e-43 Score=285.53 Aligned_cols=186 Identities=26% Similarity=0.473 Sum_probs=173.2
Q ss_pred CccccCC-CCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 3 DKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 3 s~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
++++... +++||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|+++.++|||+|
T Consensus 53 ~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v 132 (261)
T 1iru_C 53 HKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGV 132 (261)
T ss_dssp CTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCE
T ss_pred CcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceE
Confidence 3444444 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhcccCCCC-e
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS-E 159 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~-~ 159 (191)
++||||||+++||+||.+||+|++.+++++|+|+|++.++++||++|+ + +||++||++++++||..+.++|..++ +
T Consensus 133 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~ms~eeA~~la~~al~~~~~~d~~sg~~ 210 (261)
T 1iru_C 133 SLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK--EGEMTLKSALALAIKVLNKTMDVSKLSAEK 210 (261)
T ss_dssp EEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC--TTCCCHHHHHHHHHHHHHHSSSCTTCCSTT
T ss_pred EEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 999999996578999999999999999999999999999999999984 6 89999999999999999999987765 8
Q ss_pred EEEEEEEeCCCc--EEEcCHHHHHHHHHHhhcc
Q 029584 160 IEVGVVSKENPE--FRVLSIEEIDEHLTAISER 190 (191)
Q Consensus 160 iei~iv~~~~~~--~~~~~~~~i~~~~~~~~~~ 190 (191)
++|++|+++++. |++++++||++++.++.++
T Consensus 211 i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~ 243 (261)
T 1iru_C 211 VEIATLTRENGKTVIRVLKQKEVEQLIKKHEEE 243 (261)
T ss_dssp CEEEEEECCSSSCEEEECCHHHHHHHHHHHHTT
T ss_pred EEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhc
Confidence 999999998753 8999999999999998654
No 6
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.5e-43 Score=280.98 Aligned_cols=179 Identities=34% Similarity=0.565 Sum_probs=170.1
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++.+++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|
T Consensus 55 ~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v 134 (233)
T 1yar_A 55 RSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGV 134 (233)
T ss_dssp CCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCE
T ss_pred CcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceE
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCCeEE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIE 161 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~ie 161 (191)
++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++||++||++++++||..+.++|+...+++
T Consensus 135 ~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~~d~s~~~i~ 211 (233)
T 1yar_A 135 SLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIKALKSSLEEGEELKAPE 211 (233)
T ss_dssp EEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHTSCSSCCCCCCE
T ss_pred EEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccCCCCcEE
Confidence 999999997 78999999999999999999999999999999999984 789999999999999999999998545899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHH
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHL 184 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~ 184 (191)
|++|+++++ |++++++||+++|
T Consensus 212 v~vi~~~~~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 212 IASITVGNK-YRIYDQEEVKKFL 233 (233)
T ss_dssp EEEEETTSC-CEECCHHHHHTTC
T ss_pred EEEEECCCC-EEECCHHHHHhhC
Confidence 999999975 9999999998753
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.1e-44 Score=290.62 Aligned_cols=183 Identities=32% Similarity=0.580 Sum_probs=174.0
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++|+.+++++||++|++|++|+++|+.+|++.|+++++.+++.|+++++++++++.+++.|++++|.|++++++|||+|
T Consensus 59 ~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v 138 (264)
T 3h4p_A 59 TSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGV 138 (264)
T ss_dssp CSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSE
T ss_pred cCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeE
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCCeEE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIE 161 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~ie 161 (191)
++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.| +++||++||++++++||..+.++ ....+++
T Consensus 139 ~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~a~~~-~sg~~ie 214 (264)
T 3h4p_A 139 SLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKANED-IKPENVD 214 (264)
T ss_dssp EEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHC--CTTCCSHHHHHHHHHHHHHHSSS-CCTTSEE
T ss_pred EEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhc-cCCCeEE
Confidence 999999997 7899999999999999999999999999999999998 48999999999999999999987 5445999
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
|++|++++.+|++++++||++++.++.
T Consensus 215 v~vi~~~~~~~~~l~~~ei~~~~~~~~ 241 (264)
T 3h4p_A 215 VCIITVKDAQFKKIPVEEIKKLIEKVK 241 (264)
T ss_dssp EEEEETTTTEEEECCTTTTGGGTTTTT
T ss_pred EEEEEeCCCcEEECCHHHHHHHHHHHH
Confidence 999998877799999999999998885
No 8
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.2e-43 Score=280.43 Aligned_cols=184 Identities=30% Similarity=0.487 Sum_probs=170.6
Q ss_pred CccccCC-CCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 3 DKLLDHT-SVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 3 s~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
++++..+ +++||++|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.+++++++++|.||+++++|||+|
T Consensus 50 ~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v 129 (241)
T 1ryp_D 50 LKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGV 129 (241)
T ss_dssp SCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSE
T ss_pred ccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcce
Confidence 4555554 999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred eeEEEEEcCC-CCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHhhhcccCCCCe
Q 029584 82 VAMVLSIDEE-CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKN-DPAFTFQETVQTAISTLQSVLQEDFKASE 159 (191)
Q Consensus 82 ~~iv~G~d~~-~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-~~~~s~eea~~l~~~~l~~~~~~d~~~~~ 159 (191)
++||||||++ ++|+||.+||+|++.++++.|+|+|++.++++||++|.. +++||++||++++++||..+.+ ....+
T Consensus 130 ~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~--~sg~~ 207 (241)
T 1ryp_D 130 STLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ--TGAKN 207 (241)
T ss_dssp EEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC--SCSTT
T ss_pred eeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc--CCCCc
Confidence 9999999975 789999999999999999999999999999999999833 4789999999999999999995 44458
Q ss_pred EEEEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 160 IEVGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 160 iei~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
++|++|++++ +|++++++||++++.++.+
T Consensus 208 i~v~vi~~~~-~~~~l~~~ei~~~~~~~~~ 236 (241)
T 1ryp_D 208 IEITVVKPDS-DIVALSSEEINQYVTQIEQ 236 (241)
T ss_dssp EEEEEEETTT-EEEECCHHHHHHHHHHHTH
T ss_pred EEEEEEECCC-cEEECCHHHHHHHHHHHhh
Confidence 9999999987 4999999999999998864
No 9
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=7e-44 Score=284.42 Aligned_cols=186 Identities=24% Similarity=0.458 Sum_probs=173.8
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcC------
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY------ 75 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~------ 75 (191)
.++++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++++|.||++++
T Consensus 47 ~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~ 126 (242)
T 1ryp_E 47 TSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLM 126 (242)
T ss_dssp SSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCB
T ss_pred CCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccc
Confidence 45666688999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccC
Q 029584 76 MRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF 155 (191)
Q Consensus 76 ~rP~~v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~ 155 (191)
.|||+|++||||||+++||+||.+||+|++.++++.|+|+|++.++++||++| .++||++||++++++||..+.+|+.
T Consensus 127 ~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~ 204 (242)
T 1ryp_E 127 SRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILKQVMEEKL 204 (242)
T ss_dssp SSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHCSSCC
T ss_pred cCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999557899999999999999999999999999999999998 4789999999999999999999855
Q ss_pred CCCeEEEEEEEeCCCcEEEcCHHHHHHHHHHhhcc
Q 029584 156 KASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 190 (191)
Q Consensus 156 ~~~~iei~iv~~~~~~~~~~~~~~i~~~~~~~~~~ 190 (191)
...+++|++|+++++ |++++++||++++.++.++
T Consensus 205 sg~~i~v~vi~~~~~-~~~~~~~ei~~~~~~~~~~ 238 (242)
T 1ryp_E 205 DENNAQLSCITKQDG-FKIYDNEKTAELIKELKEK 238 (242)
T ss_dssp CTTSEEEEEEETTTE-EEECCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEECCCC-eEECCHHHHHHHHHHHhhh
Confidence 445899999999986 9999999999999988754
No 10
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.5e-43 Score=278.61 Aligned_cols=178 Identities=23% Similarity=0.372 Sum_probs=167.7
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
.++.+++++||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.++++++++++.| ++|||+|++
T Consensus 25 ~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----~~~P~~v~~ 100 (219)
T 3h4p_a 25 NLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSS----RMFPFLTQI 100 (219)
T ss_dssp TEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHT----TTTTCCCCC
T ss_pred CEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh----cCCCceEEE
Confidence 4677899999999999999999999999999999999999999999999999999999999999765 368999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceecee-eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIE 161 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ie 161 (191)
||||||+++||+||.+||+|++.+++ +.|+|+|++.++++||++| .++||++||++++++||..+.+||..++ +++
T Consensus 101 lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~rd~~sg~~i~ 178 (219)
T 3h4p_a 101 IIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--DRDMSVEEGIKLALNALKSAMERDTFSGNGIS 178 (219)
T ss_dssp EEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC--CTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCC
T ss_pred EEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEE
Confidence 99999986789999999999999998 9999999999999999998 4799999999999999999999998775 899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
|++|++++ |++++++||+++|.++++
T Consensus 179 v~vi~~~g--~~~l~~~ei~~~l~~~~~ 204 (219)
T 3h4p_a 179 LAVITKDG--VKIFEDEEIEKILDSMKA 204 (219)
T ss_dssp EEEEETTE--EEECCHHHHHHHHHHCC-
T ss_pred EEEEeCCC--eEEcCHHHHHHHHHHhhc
Confidence 99999984 999999999999999874
No 11
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2e-43 Score=282.79 Aligned_cols=184 Identities=29% Similarity=0.482 Sum_probs=172.4
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++.+++++||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+++++++++|.|+++++.|||+|
T Consensus 50 ~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v 129 (248)
T 1iru_D 50 VAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGI 129 (248)
T ss_dssp CCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCE
T ss_pred cccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccE
Confidence 45688888999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhcccCCCCe
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDFKASE 159 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~--s~eea~~l~~~~l~~~~~~d~~~~~ 159 (191)
++||||||++++|+||.+||+|++.+++++|+|+|++.++++||++|+ ++| |++||++++++||..+.+ ....+
T Consensus 130 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~m~~s~eea~~la~~al~~~~~--~sg~~ 205 (248)
T 1iru_D 130 SALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT--DEAIETDDLTIKLVIKALLEVVQ--SGGKN 205 (248)
T ss_dssp EEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC--SSTTCSHHHHHHHHHHHHHTTSC--TTSTT
T ss_pred EEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc--ccccCCHHHHHHHHHHHHHHHHc--CCCCc
Confidence 999999995579999999999999999999999999999999999984 789 999999999999999986 33458
Q ss_pred EEEEEEEeCCCcEEEcCHHHHHHHHHHhhcc
Q 029584 160 IEVGVVSKENPEFRVLSIEEIDEHLTAISER 190 (191)
Q Consensus 160 iei~iv~~~~~~~~~~~~~~i~~~~~~~~~~ 190 (191)
++|++|+++++ |++++++||++++.++.++
T Consensus 206 i~v~vi~~~g~-~~~l~~~ei~~~~~~~~~~ 235 (248)
T 1iru_D 206 IELAVMRRDQS-LKILNPEEIEKYVAEIEKE 235 (248)
T ss_dssp CCEEEEESSSC-EECCCHHHHHHHTTTTTTT
T ss_pred EEEEEEECCCc-EEECCHHHHHHHHHHHHhc
Confidence 99999999874 9999999999999988654
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.4e-43 Score=281.12 Aligned_cols=185 Identities=27% Similarity=0.383 Sum_probs=171.9
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++..++++||++|++|++|+++|..+|++.|.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|
T Consensus 54 ~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v 133 (254)
T 1iru_G 54 LSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGC 133 (254)
T ss_dssp SCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSE
T ss_pred CCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceE
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EI 160 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~i 160 (191)
++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|. ++||++||++++++||..+.+++..++ ++
T Consensus 134 ~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~~~~~~i 211 (254)
T 1iru_G 134 SFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM--KEMTCRDIVKEVAKIIYIVHDEVKDKAFEL 211 (254)
T ss_dssp EEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG--GGCCHHHHHHHHHHHHHHHSCSSSSCCEEE
T ss_pred EEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhccCCCCcE
Confidence 999999995478999999999999999999999999999999999974 789999999999999999998876454 89
Q ss_pred EEEEEEeCCC-cEEEcCHHHHHHHHHHhh
Q 029584 161 EVGVVSKENP-EFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 161 ei~iv~~~~~-~~~~~~~~~i~~~~~~~~ 188 (191)
+|++|+++.+ +|++++++++++++..+.
T Consensus 212 ev~vi~~~~~g~~~~l~~~~i~~~~~~~~ 240 (254)
T 1iru_G 212 ELSWVGELTNGRHEIVPKDIREEAEKYAK 240 (254)
T ss_dssp EEEECBTTTTTCCEECCHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCeEECCHHHHHHHHHHHH
Confidence 9999998732 499999999999998764
No 13
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=9.8e-43 Score=270.75 Aligned_cols=176 Identities=20% Similarity=0.351 Sum_probs=166.1
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
+++.+++++||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.++.+ +.|||++++
T Consensus 24 ~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~----r~rp~~~~~ 99 (202)
T 1j2q_H 24 NFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSY----RYFPYLVQL 99 (202)
T ss_dssp TEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEE
T ss_pred CEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh----CCCCceEEE
Confidence 6788899999999999999999999999999999999999999999999999999999999999653 378999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceecee-eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIE 161 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ie 161 (191)
||||||+ +||+||.+||+|++.+++ ++|+|+|++.++++||+.|+ ++||++||++++++||..+.+||..++ +++
T Consensus 100 lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~~d~~s~~~i~ 176 (202)
T 1j2q_H 100 LIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAVELAVRAIYSAMKRDSASGDGID 176 (202)
T ss_dssp EEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTTCTTSCSCEE
T ss_pred EEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHHHHHhcCCCCCCcEE
Confidence 9999997 789999999999999999 99999999999999999984 789999999999999999999998665 899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
|++|++++ |+.++++||++++.+++
T Consensus 177 v~vi~~~g--~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 177 VVKITEDE--FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp EEEECSSC--EEECHHHHHHHHGGGTT
T ss_pred EEEEeCCC--eEEeCHHHHHHHHHHhh
Confidence 99999984 99999999999998774
No 14
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.7e-42 Score=276.99 Aligned_cols=181 Identities=29% Similarity=0.494 Sum_probs=170.5
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++.+++++||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|+++.+.|||+|
T Consensus 55 ~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v 134 (246)
T 1j2p_A 55 GSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGV 134 (246)
T ss_dssp SCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCE
T ss_pred CccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccE
Confidence 45677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EI 160 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~i 160 (191)
++|||||| +||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++||++||++++++||..+.++ ..++ ++
T Consensus 135 ~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~~sg~~i 209 (246)
T 1j2p_A 135 SLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR--DDLSFDDAMVLGLVAMGLSIES-ELVPENI 209 (246)
T ss_dssp EEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTS-CCCGGGE
T ss_pred EEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhc-cCCCCcE
Confidence 99999999 68999999999999999999999999999999999984 7899999999999999999988 4444 89
Q ss_pred EEEEEE-eCCCcEEEcCHHHHHHHHHHhh
Q 029584 161 EVGVVS-KENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 161 ei~iv~-~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
+|++|+ +++ +|++++++||++++.++.
T Consensus 210 ~v~vi~~~~~-~~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 210 EVGYVKVDDR-TFKEVSPEELKPYVERAN 237 (246)
T ss_dssp EEEEEETTTC-CCEECCHHHHHHHHHHHH
T ss_pred EEEEEEcCCC-ceEECCHHHHHHHHHHHH
Confidence 999999 655 499999999999998875
No 15
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=8e-43 Score=281.37 Aligned_cols=178 Identities=26% Similarity=0.479 Sum_probs=168.1
Q ss_pred CCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEEEEE
Q 029584 9 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSI 88 (191)
Q Consensus 9 ~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv~G~ 88 (191)
++.+||++|++|++|++||+.+|++.|.++++.+++.|+++++++++++.+++++++++|.|||+++.|||+|++|||||
T Consensus 58 ~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~ 137 (263)
T 1iru_F 58 AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY 137 (263)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhccc-CCC-CeEEEEEEE
Q 029584 89 DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQED-FKA-SEIEVGVVS 166 (191)
Q Consensus 89 d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d-~~~-~~iei~iv~ 166 (191)
|+ +||+||.+||+|++.+++++|+|+|++.++++||+.|++.++||++||++++++||..+.+|| ..+ .+++|++|+
T Consensus 138 D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~ 216 (263)
T 1iru_F 138 DD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVG 216 (263)
T ss_dssp ET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEE
T ss_pred cC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEE
Confidence 97 789999999999999999999999999999999999963348999999999999999999998 344 489999999
Q ss_pred eCCCcEEEcCHHHHHHHHHHhh
Q 029584 167 KENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
++++ |+++++++|++++.++.
T Consensus 217 ~~~~-~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 217 KDLE-FTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp TTEE-EEEECSGGGHHHHTTCC
T ss_pred CCCC-eEECCHHHHHHHHHHHh
Confidence 9863 99999999999998875
No 16
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.4e-42 Score=276.73 Aligned_cols=184 Identities=30% Similarity=0.492 Sum_probs=172.2
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAE-FRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLG 80 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~ 80 (191)
.++++.+++++||++|++|++|++||..+|++.+.++++.+++. |+..++.+++++.+++.+++++|.|++++++|||+
T Consensus 52 ~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~ 131 (250)
T 1ryp_B 52 SSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFG 131 (250)
T ss_dssp SCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCC
T ss_pred CCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccce
Confidence 36788889999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCCeE
Q 029584 81 VVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEI 160 (191)
Q Consensus 81 v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~~i 160 (191)
|++||||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++||++||++++++||..+.+++....++
T Consensus 132 v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~sg~~i 209 (250)
T 1ryp_B 132 VSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN--DELELEDAIHIALLTLKESVEGEFNGDTI 209 (250)
T ss_dssp EEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCCSCCSTTTE
T ss_pred EEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhccccCCCCE
Confidence 9999999997678999999999999999999999999999999999984 78999999999999999999887754599
Q ss_pred EEEEEEeC--------------CCcEEEcCHHHHHHHHHHh
Q 029584 161 EVGVVSKE--------------NPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 161 ei~iv~~~--------------~~~~~~~~~~~i~~~~~~~ 187 (191)
+|++|+++ ++.|++++++||++++.++
T Consensus 210 ~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 210 ELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp EEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred EEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 99999986 2359999999999998753
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1.5e-42 Score=276.63 Aligned_cols=182 Identities=27% Similarity=0.510 Sum_probs=170.4
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcC-----c
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAY-----M 76 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~-----~ 76 (191)
.++++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|+++.+ .
T Consensus 55 ~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~ 134 (241)
T 1iru_E 55 TSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMS 134 (241)
T ss_dssp CCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBS
T ss_pred CCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccccccccc
Confidence 35666688999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred ccccceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCC
Q 029584 77 RPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFK 156 (191)
Q Consensus 77 rP~~v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~ 156 (191)
|||+|++||||||. +||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++||++||++++++||..+.+++..
T Consensus 135 rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~s 211 (241)
T 1iru_E 135 RPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH--KSMTLKEAIKSSLIILKQVMEEKLN 211 (241)
T ss_dssp SCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSCCC
T ss_pred ccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999995 88999999999999999999999999999999999984 7899999999999999999998444
Q ss_pred CCeEEEEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 157 ASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 157 ~~~iei~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
..+++|++++++++ |++++++||++++.++
T Consensus 212 g~~i~v~vi~~~~~-~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 212 ATNIELATVQPGQN-FHMFTKEELEEVIKDI 241 (241)
T ss_dssp TTSEEEEEECSSSC-CEECCHHHHHHHHTTC
T ss_pred CCCEEEEEEECCCC-eEECCHHHHHHHHHhC
Confidence 45899999999987 9999999999998753
No 18
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.7e-42 Score=274.91 Aligned_cols=177 Identities=16% Similarity=0.229 Sum_probs=158.6
Q ss_pred CCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHH-HHHHHhhhhcCcccccceeEE
Q 029584 8 HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIA-DKSQVYTQHAYMRPLGVVAMV 85 (191)
Q Consensus 8 ~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~-~~~~~~t~~~~~rP~~v~~iv 85 (191)
+++++|||+|++|++|+++|+.+|++.|.+.++.+++.|+++++ ++++++.|+++++ .+.|.||| ++|||+|++||
T Consensus 47 ~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~li 124 (248)
T 3mi0_A 47 SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCV 124 (248)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEE
T ss_pred CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEE
Confidence 56899999999999999999999999999999999999999999 8999999999999 77888987 78999999999
Q ss_pred EEEcC---CCCCeEEEECCCcceec-eeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhh-------ccc
Q 029584 86 LSIDE---ECGPRLFKCDPAGHFFG-HKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-------QED 154 (191)
Q Consensus 86 ~G~d~---~~~p~Ly~~d~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~-------~~d 154 (191)
||||+ .+||+||++||+|++.. ++++|+|+|++.++++||++| +++||++||++++++||..+. +++
T Consensus 125 aG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y--~~~mt~eeai~la~~aL~~~~~~~~~~~~~~ 202 (248)
T 3mi0_A 125 AEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESY--AENASLTDALRIAVAALRAGSADTSGGDQPT 202 (248)
T ss_dssp EECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHC-----------
T ss_pred EEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHhhcccCcccc
Confidence 99997 47899999999999995 999999999999999999998 478999999999999999999 677
Q ss_pred CCCCeEEEEEEEeCC--CcEEEcCHHHHHHHHHHhh
Q 029584 155 FKASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 155 ~~~~~iei~iv~~~~--~~~~~~~~~~i~~~~~~~~ 188 (191)
+...+++|++|++++ +.|++++++||++++.++.
T Consensus 203 ~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 203 LGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp -CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred cCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 777799999999985 4699999999999988764
No 19
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.6e-42 Score=272.81 Aligned_cols=182 Identities=19% Similarity=0.188 Sum_probs=170.2
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccce
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 82 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~ 82 (191)
++++.+++++||++|++|++|++||..+|++.|.++++.+++.|+++++++++++.+++.|+++++.++++. +|||+|+
T Consensus 23 g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~-~rp~~v~ 101 (235)
T 1q5q_H 23 GNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVV 101 (235)
T ss_dssp TTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHHH-TTTCCEE
T ss_pred CCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHhh-hcccceE
Confidence 368888999999999999999999999999999999999999999999999999999999999999988765 8999999
Q ss_pred eEEEEEcCCCC-----CeEEEECCCcceece--eeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccC
Q 029584 83 AMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF 155 (191)
Q Consensus 83 ~iv~G~d~~~~-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~ 155 (191)
+||||||++++ |+||.+||+|++.++ ++.|+|+|+++++++||+.| .++||++||++++++||..+.++|.
T Consensus 102 ~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~a~~~d~ 179 (235)
T 1q5q_H 102 PLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPDSDEETALRAAIESLYDAADDDS 179 (235)
T ss_dssp EEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHhhCc
Confidence 99999998557 999999999999999 99999999999999999998 4889999999999999999999998
Q ss_pred CCCe---E-----EEEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 156 KASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 156 ~~~~---i-----ei~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
.+++ + +|++|++++ |++++++++++++.++.+
T Consensus 180 ~sg~~~~i~~~~~ev~vi~~~g--~~~l~~~ei~~~~~~~~~ 219 (235)
T 1q5q_H 180 ATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 219 (235)
T ss_dssp TTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHHH
T ss_pred ccCCcccccccccEEEEEeCCC--eEEeCHHHHHHHHHHHHH
Confidence 8763 2 999999874 999999999999998863
No 20
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.4e-42 Score=268.63 Aligned_cols=176 Identities=23% Similarity=0.391 Sum_probs=165.3
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
+++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.+ +.|||+|++
T Consensus 32 ~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~----r~rp~~v~~ 107 (217)
T 1yar_H 32 NFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQV----KYMPYMVQL 107 (217)
T ss_dssp TEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT----TTSCCCEEE
T ss_pred CEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc----CCCCceEEE
Confidence 6788899999999999999999999999999999999999999999999999999999999999653 378999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++||+|||++++++||..+.+||..++ +++|
T Consensus 108 lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~rd~~s~~~i~v 183 (217)
T 1yar_H 108 LVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 183 (217)
T ss_dssp EEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEE
T ss_pred EEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHHHHhccCCCCCcEEE
Confidence 999999 57999999999999999999999999999999999984 789999999999999999999998665 8999
Q ss_pred EEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 163 GVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
++++++. +|++++++||++++.++.
T Consensus 184 ~vi~~~~-g~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 184 AVITRKD-GYVQLPTDQIESRIRKLG 208 (217)
T ss_dssp EEEETTT-EEEECCHHHHHHHHHHHT
T ss_pred EEEECCC-CEEEcCHHHHHHHHHHHH
Confidence 9999843 399999999999998875
No 21
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.4e-42 Score=275.41 Aligned_cols=173 Identities=21% Similarity=0.376 Sum_probs=162.0
Q ss_pred CCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEEEEE
Q 029584 9 TSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSI 88 (191)
Q Consensus 9 ~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv~G~ 88 (191)
++.+||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++++|.|||+.+.|||+|++|||||
T Consensus 57 ~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~ 136 (233)
T 1ryp_F 57 SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGY 136 (233)
T ss_dssp CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEE
T ss_pred cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhccc-CCC-CeEEEEE
Q 029584 89 DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQED-FKA-SEIEVGV 164 (191)
Q Consensus 89 d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~--s~eea~~l~~~~l~~~~~~d-~~~-~~iei~i 164 (191)
|+ .||+||.+||+|++.+++++|+|+|++.++++||++|++.++| |++||++++++||..+. +| ..+ .+++|++
T Consensus 137 D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~v 214 (233)
T 1ryp_F 137 DK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAI 214 (233)
T ss_dssp ET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEE
T ss_pred eC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEE
Confidence 98 7899999999999999999999999999999999999632389 99999999999999999 76 444 4899999
Q ss_pred EEeCCCcEEEcCHHHHHHHH
Q 029584 165 VSKENPEFRVLSIEEIDEHL 184 (191)
Q Consensus 165 v~~~~~~~~~~~~~~i~~~~ 184 (191)
|+++++ |++++++||+++|
T Consensus 215 i~~~~~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 215 VGKDTP-FTIYDGEAVAKYI 233 (233)
T ss_dssp EETTEE-EEEEEGGGGGGGC
T ss_pred EECCCC-EEECCHHHHHhhC
Confidence 999864 9999999998753
No 22
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=2.7e-42 Score=270.15 Aligned_cols=178 Identities=12% Similarity=0.172 Sum_probs=167.4
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
+++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++++++.+|.|++ .||++++
T Consensus 24 ~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~----~p~~v~~ 99 (212)
T 1ryp_L 24 NWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGT 99 (212)
T ss_dssp TEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCBEE
T ss_pred CeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCC----CCceEEE
Confidence 678889999999999999999999999999999999999999999999999999999999999998875 3999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
||||||++++|+||.+||+|++.++++.|+|+|+++++++||++| +++||++||++++++||..+.+||..++ +++|
T Consensus 100 lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v 177 (212)
T 1ryp_L 100 MICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNL 177 (212)
T ss_dssp EEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred EEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHHhccccCCceEE
Confidence 999999657899999999999999999999999999999999998 4789999999999999999999997765 8999
Q ss_pred EEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 163 GVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
+++++++ |++++++||++++.++.+
T Consensus 178 ~vi~~~g--~~~~~~~ei~~~~~~~~~ 202 (212)
T 1ryp_L 178 YHVTEDG--WIYHGNHDVGELFWKVKE 202 (212)
T ss_dssp EEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred EEEcCCc--eEEECHHHHHHHHHHHHH
Confidence 9999874 999999999999887753
No 23
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.5e-41 Score=275.23 Aligned_cols=181 Identities=25% Similarity=0.389 Sum_probs=165.0
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++..++++||++|++||+|+++|+.+|++.|+++++.+++.|+++++++++++.++++|++++|.||+++++|||+|
T Consensus 55 t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv 134 (288)
T 3nzj_F 55 TSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 134 (288)
T ss_dssp CCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCE
T ss_pred ccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceE
Confidence 45677777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHhhhcccCCCC-e
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-NDPAFTFQETVQTAISTLQSVLQEDFKAS-E 159 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~-~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ 159 (191)
++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||++++ +.++||++||++++++||..+.+++..++ +
T Consensus 135 ~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~ 213 (288)
T 3nzj_F 135 STIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFE 213 (288)
T ss_dssp EEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEE
T ss_pred EEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCe
Confidence 999999998 78999999999999999999999999999999999932 36899999999999999999999987665 8
Q ss_pred EEEEEEEe-C-CCcEEEcCHHHHHHH
Q 029584 160 IEVGVVSK-E-NPEFRVLSIEEIDEH 183 (191)
Q Consensus 160 iei~iv~~-~-~~~~~~~~~~~i~~~ 183 (191)
++|+||++ + ++.++.++.+++++.
T Consensus 214 iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 214 LEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp EEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred EEEEEEEecCCCceEEECCHHHHHHH
Confidence 99999998 4 444666777666543
No 24
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=8.1e-42 Score=265.94 Aligned_cols=176 Identities=15% Similarity=0.198 Sum_probs=166.0
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
+++.+++++||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+++++++.+|.|++ +||+|++
T Consensus 24 ~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~----~~~~v~~ 99 (204)
T 1iru_L 24 AYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG----MGLSMGT 99 (204)
T ss_dssp TEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT----SCCCBEE
T ss_pred CEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC----CCeeEEE
Confidence 677889999999999999999999999999999999999999999999999999999999999987643 5999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
||||||+ +||+||.+||+|++.++++.|+|+|++.++++||++|+ ++||.+||++++++||..+.+||..++ +++|
T Consensus 100 lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v 176 (204)
T 1iru_L 100 MICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176 (204)
T ss_dssp EEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred EEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHhCccCCCceEE
Confidence 9999997 78999999999999999999999999999999999984 789999999999999999999997654 8999
Q ss_pred EEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 163 GVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
++|++++ |+.++++||++++.++.
T Consensus 177 ~vi~~~g--~~~l~~~ei~~~~~~~~ 200 (204)
T 1iru_L 177 YHVREDG--WIRVSSDNVADLHEKYS 200 (204)
T ss_dssp EEECSSC--EEEEEEEEHHHHHHHHT
T ss_pred EEEeCCc--eEEeCHHHHHHHHHHhc
Confidence 9999875 99999999999999886
No 25
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.9e-41 Score=269.63 Aligned_cols=184 Identities=23% Similarity=0.366 Sum_probs=167.6
Q ss_pred CCccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 2 QDKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 2 ~s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
+++++..+..+||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+++++++++|.||+++++|||+|
T Consensus 51 ~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v 130 (244)
T 1ryp_G 51 TSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGV 130 (244)
T ss_dssp CCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCE
T ss_pred CCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceE
Confidence 45566666779999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHhhhcccCCCC
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKK---MKNDPAFTFQETVQTAISTLQSVLQEDFKAS 158 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~ 158 (191)
++||||||+ +||+||.+||+|++.+++++|+|+|++.++++||+. | +++||++||++++++||..+.++|..++
T Consensus 131 ~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~--~~~ms~eea~~la~~al~~~~~~d~~s~ 207 (244)
T 1ryp_G 131 STIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHH--PEGLSAREAVKQAAKIIYLAHEDNKEKD 207 (244)
T ss_dssp EEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHC--TTCCCHHHHHHHHHHHHHHHGGGGTTSC
T ss_pred EEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhc--CCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999997 789999999999999999999999999999999997 6 4789999999999999999999998765
Q ss_pred -eEEEEEEEe-CCCcEEEcCHHHHHHHHHHhh
Q 029584 159 -EIEVGVVSK-ENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 159 -~iei~iv~~-~~~~~~~~~~~~i~~~~~~~~ 188 (191)
+++|++|++ +..+++.+.|+++-+..++.+
T Consensus 208 ~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~ 239 (244)
T 1ryp_G 208 FELEISWCSLSETNGLHKFVKGDLLQEAIDFA 239 (244)
T ss_dssp EEEEEEEEETTTTTTSEEECCTHHHHHHHHHH
T ss_pred CeEEEEEEEecCCCCeeeeChHHHHHHHHHHH
Confidence 899999997 222377777777776666554
No 26
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.5e-42 Score=270.31 Aligned_cols=175 Identities=15% Similarity=0.200 Sum_probs=164.9
Q ss_pred cccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 5 LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 5 l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
++.+++++||++|++|++|++||+.+|++.+.++++.+++.|+++++++++++.+++++++.+|.|++ ||++++|
T Consensus 25 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~-----p~~~~~l 99 (205)
T 1iru_H 25 YIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-----DLMAGII 99 (205)
T ss_dssp EEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-----TCCEEEE
T ss_pred EEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-----CccEEEE
Confidence 77788999999999999999999999999999999999999999999999999999999999988764 9999999
Q ss_pred EEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEE
Q 029584 85 VLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 163 (191)
Q Consensus 85 v~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~ 163 (191)
|||||+++||+||.+||+|++.+++++|+|+|++.++++||++| +++||++||++++++||..+.+||..++ +++|+
T Consensus 100 vaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~ 177 (205)
T 1iru_H 100 IAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY--REGMTKEECLQFTANALALAMERDGSSGGVIRLA 177 (205)
T ss_dssp EEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred EEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEE
Confidence 99999767899999999999999999999999999999999998 4789999999999999999999997765 89999
Q ss_pred EEEeCCCcEEEcCHHHHHHHHHH
Q 029584 164 VVSKENPEFRVLSIEEIDEHLTA 186 (191)
Q Consensus 164 iv~~~~~~~~~~~~~~i~~~~~~ 186 (191)
+|++++..++.++++||++++.+
T Consensus 178 vi~~~g~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 178 AIAESGVERQVLLGDQIPKFAVA 200 (205)
T ss_dssp EEETTEEEEEEECGGGSCCCCCC
T ss_pred EEeCCCeEEEEeChHHhhHHHhh
Confidence 99999866889999999887754
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=3.4e-41 Score=274.39 Aligned_cols=179 Identities=12% Similarity=0.171 Sum_probs=168.8
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccce
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 82 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~ 82 (191)
++++.+++++||++|++|++|+++|..+|++.|.++++.+++.|+++++++++++.++++++++++.|++ +||+++
T Consensus 98 G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~ 173 (287)
T 3nzj_K 98 GNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMG 173 (287)
T ss_dssp TTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEE
T ss_pred CceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEE
Confidence 3677889999999999999999999999999999999999999999999999999999999999987754 499999
Q ss_pred eEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEE
Q 029584 83 AMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIE 161 (191)
Q Consensus 83 ~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ie 161 (191)
+||||||+++||+||.+||+|++.++++.|+|+|++.++++||+.| +++||++||++++++||..+.+||..++ +++
T Consensus 174 ~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y--~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~ 251 (287)
T 3nzj_K 174 TMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY--KWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 251 (287)
T ss_dssp EEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEE
T ss_pred EEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceE
Confidence 9999999658899999999999999999999999999999999998 4789999999999999999999999886 899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
|++|+++| |++++++||++++.++++
T Consensus 252 V~vItkdg--~~~l~~~ev~~~l~~~~e 277 (287)
T 3nzj_K 252 LYHVTEDG--WIYHGNHDVGELFWKVKE 277 (287)
T ss_dssp EEEEETTE--EEEEEEEEHHHHHHHHHH
T ss_pred EEEEeCCC--EEEeCHHHHHHHHHHHHH
Confidence 99999985 999999999999988874
No 28
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.9e-40 Score=270.77 Aligned_cols=182 Identities=19% Similarity=0.185 Sum_probs=170.3
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccce
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 82 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~ 82 (191)
++++.+++++|||+|++|++|+++|..+|++.|.++++.+++.|+++++++++++.+++.|++++|.|+++. +|||+|+
T Consensus 88 G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~~-~rp~~v~ 166 (294)
T 1q5r_H 88 GNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAA-MQGLAVV 166 (294)
T ss_dssp TTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHH-TTTTCEE
T ss_pred CceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhhh-cCCcceE
Confidence 368888999999999999999999999999999999999999999999999999999999999999988765 8999999
Q ss_pred eEEEEEcCCCC-----CeEEEECCCcceece--eeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccC
Q 029584 83 AMVLSIDEECG-----PRLFKCDPAGHFFGH--KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDF 155 (191)
Q Consensus 83 ~iv~G~d~~~~-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~ 155 (191)
+||+|||++++ |+||.+||+|++.++ ++.|+|+|+++++++||++| +++||++||++++++||..+.++|.
T Consensus 167 lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y--~~~ms~eEAi~la~~aL~~a~~rD~ 244 (294)
T 1q5r_H 167 PLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY--SPDSDEETALRAAIESLYDAADDDS 244 (294)
T ss_dssp EEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999998546 999999999999999 89999999999999999998 4789999999999999999999998
Q ss_pred CCCe---E-----EEEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 156 KASE---I-----EVGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 156 ~~~~---i-----ei~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
.+++ + +|++|++++ |++++++||++++.++.+
T Consensus 245 ~sG~~~~ir~i~~ev~vI~~~g--~~~l~~~ei~~~l~~i~~ 284 (294)
T 1q5r_H 245 ATGGPDLTRGIYPTAVTITQAG--AVHVSEETTSELARRIVA 284 (294)
T ss_dssp TTCCCBTTTTBCCEEEEEETTE--EEECCHHHHHHHHHHHCC
T ss_pred ccCCchhhcccCCEEEEEECCC--EEEcCHHHHHHHHHHHHH
Confidence 8753 5 999999874 999999999999998863
No 29
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.9e-41 Score=265.54 Aligned_cols=177 Identities=14% Similarity=0.175 Sum_probs=164.1
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-KYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
.+++.+++++||++|++|++|+++|..+|++.|.++++.+++.|++ +++++++++.+++++++.+ |+++.++|||+|
T Consensus 31 g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v 108 (219)
T 1iru_N 31 GSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAM--YSRRSKMNPLWN 108 (219)
T ss_dssp TTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHH--HHHHHTTCCCCE
T ss_pred CcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHhcccCCCceE
Confidence 3677789999999999999999999999999999999999999998 9999999999999999998 666778999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eE
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EI 160 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~i 160 (191)
++||||||+ ++|+||.+||+|++.++++.|+|+|++.++++||+.|++.++||++||++++++||..+.+||..++ ++
T Consensus 109 ~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~i 187 (219)
T 1iru_N 109 TMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRF 187 (219)
T ss_dssp EEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCE
T ss_pred EEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 999999997 6999999999999999999999999999999999999532399999999999999999999998765 89
Q ss_pred EEEEEEeCCCcEEEcCHHHHHHHH
Q 029584 161 EVGVVSKENPEFRVLSIEEIDEHL 184 (191)
Q Consensus 161 ei~iv~~~~~~~~~~~~~~i~~~~ 184 (191)
+|++|++++ ++.+++++|+..+
T Consensus 188 ~v~vi~~~g--~~~~~~~~i~~~~ 209 (219)
T 1iru_N 188 QTATVTEKG--VEIEGPLSTETNW 209 (219)
T ss_dssp EEEEEETTE--EEEEEEECCCCCC
T ss_pred EEEEEcCCC--EEEcCCeeccchh
Confidence 999999985 9999998887654
No 30
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2e-40 Score=266.80 Aligned_cols=178 Identities=16% Similarity=0.244 Sum_probs=159.6
Q ss_pred CCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH-HHHHhhhhcCcccccceeEE
Q 029584 8 HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGY-EMPVDVLAKWIAD-KSQVYTQHAYMRPLGVVAMV 85 (191)
Q Consensus 8 ~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~-~~~~~t~~~~~rP~~v~~iv 85 (191)
+++++|||+|++|++|+++|+.+|++.|.++++.+++.|++.++. +++++.+++++++ +.|.|+ .++|||+|++||
T Consensus 47 s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lv 124 (259)
T 1q5q_A 47 STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICV 124 (259)
T ss_dssp CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEE
T ss_pred CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEE
Confidence 468899999999999999999999999999999999999999984 9999999999999 677787 468999999999
Q ss_pred EEEc--C-CCCCeEEEECCCccee-ceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhh-----cccCC
Q 029584 86 LSID--E-ECGPRLFKCDPAGHFF-GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL-----QEDFK 156 (191)
Q Consensus 86 ~G~d--~-~~~p~Ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~-----~~d~~ 156 (191)
|||| + ++||+||.+||+|++. .++++|+|+|++.++++||++| .++||++||++++++||..+. +||+.
T Consensus 125 aG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~ms~eea~~la~~al~~~~~~~~~~rd~s 202 (259)
T 1q5q_A 125 AEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESY--RADLDLEAAVGIAVNALRQGGAGEGEKRNVD 202 (259)
T ss_dssp EECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHTTCC--------CC
T ss_pred EEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHhhcccccccCC
Confidence 9999 2 4799999999999999 7899999999999999999998 478999999999999999999 89994
Q ss_pred CCeEEEEEEEeCC--CcEEEcCHHHHHHHHHHhhc
Q 029584 157 ASEIEVGVVSKEN--PEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 157 ~~~iei~iv~~~~--~~~~~~~~~~i~~~~~~~~~ 189 (191)
..+++|++|++++ .+|+++++++|+.++.++.+
T Consensus 203 g~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~ 237 (259)
T 1q5q_A 203 VASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPA 237 (259)
T ss_dssp SSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC--
T ss_pred CCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhh
Confidence 4589999999985 24999999999999887754
No 31
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=5e-40 Score=254.70 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=154.1
Q ss_pred cccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 5 LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 5 l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
++.+++++||++|++|++|+++|+.+|++.+.++++.+++.|+++++++++++.+++.+++.++.|++. ++||++++|
T Consensus 26 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~--r~p~~v~~l 103 (198)
T 1ryp_K 26 SVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS--RRPYQVNVL 103 (198)
T ss_dssp EEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS--SSCCCEEEE
T ss_pred EEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc--CCCceEEEE
Confidence 344679999999999999999999999999999999999999999999999999999999999877632 359999999
Q ss_pred EEEEcC-CCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 85 VLSIDE-ECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 85 v~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
|||||+ +++|+||.+||+|++.++++.|+|+|++.++++||+.|+ ++||++||++++++||..+.+||..++ +++|
T Consensus 104 vaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v 181 (198)
T 1ryp_K 104 IGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEGLDLLKLCVQELEKRMPMDFKGVIV 181 (198)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhCccCCCceEE
Confidence 999996 478999999999999999999999999999999999984 789999999999999999999997765 8999
Q ss_pred EEEEeCCCcEEEcCH
Q 029584 163 GVVSKENPEFRVLSI 177 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~ 177 (191)
++|++++ ++.+++
T Consensus 182 ~vi~~~g--~~~~~~ 194 (198)
T 1ryp_K 182 KIVDKDG--IRQVDD 194 (198)
T ss_dssp EEEETTE--EEEECC
T ss_pred EEEcCCC--EEEecc
Confidence 9999985 888775
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=3.8e-41 Score=267.19 Aligned_cols=178 Identities=14% Similarity=0.218 Sum_probs=164.5
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhhhhcCcc
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-----KYGYEMPVDVLAKWIADKSQVYTQHAYMR 77 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~t~~~~~r 77 (191)
+.++.+++++||++|++|++|+++|..+|++.|.++++.+++.|++ +++++++++.+++++++.+ |+++.++|
T Consensus 31 g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~ 108 (233)
T 1ryp_N 31 GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMN 108 (233)
T ss_dssp TTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTC
T ss_pred CCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHH--HHhcCCCC
Confidence 3577889999999999999999999999999999999999999999 9999999999999999998 67777889
Q ss_pred cccceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHhhhccc
Q 029584 78 PLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP---AFTFQETVQTAISTLQSVLQED 154 (191)
Q Consensus 78 P~~v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~---~~s~eea~~l~~~~l~~~~~~d 154 (191)
||+|++||||||++++|+||.+||+|++.++++.|+|+|++.++++||+.|++.+ +||++||++++++||..+.+||
T Consensus 109 P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~rd 188 (233)
T 1ryp_N 109 PLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRD 188 (233)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHB
T ss_pred CceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998568999999999999999999999999999999999985211 8999999999999999999999
Q ss_pred CCCC-eEEEEEEEeCCCcEEEcCHHHHHHH
Q 029584 155 FKAS-EIEVGVVSKENPEFRVLSIEEIDEH 183 (191)
Q Consensus 155 ~~~~-~iei~iv~~~~~~~~~~~~~~i~~~ 183 (191)
..++ +++|++|++++ +++.+++++|+.+
T Consensus 189 ~~sg~~i~v~vi~~~~-g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 189 ARSSRNFSLAIIDKNT-GLTFKKNLQVENM 217 (233)
T ss_dssp TTCCSEEEEEEEETTT-EEEEEEEEECCSC
T ss_pred ccCCCcEEEEEEECCC-CeEEcChHhcccc
Confidence 8765 89999999983 2999999988776
No 33
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=7e-40 Score=267.21 Aligned_cols=181 Identities=15% Similarity=0.117 Sum_probs=156.5
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
.++.+++++||++|++|++|+++|..+|++.|.++++.+++.|++.++++++++.+++.++++++.|++ ..+|||+|++
T Consensus 81 ~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~ 159 (291)
T 2jay_A 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALP 159 (291)
T ss_dssp ----CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEE
T ss_pred CeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeE
Confidence 367789999999999999999999999999999999999999999999999999999999999998865 4578999999
Q ss_pred EEEEEcCCCC-----CeEEEECCCccee--ceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCC
Q 029584 84 MVLSIDEECG-----PRLFKCDPAGHFF--GHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFK 156 (191)
Q Consensus 84 iv~G~d~~~~-----p~Ly~~d~~G~~~--~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~ 156 (191)
||||||++++ |+||.+||+|++. ++++.|+|+|+++++++||+.|+ ++||++||++++++||..+.++|+.
T Consensus 160 lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eEAi~la~~aL~~a~~~D~~ 237 (291)
T 2jay_A 160 LLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEALYDAADDDSA 237 (291)
T ss_dssp EEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG--GCCSHHHHHHHHHHHHHHC------
T ss_pred EEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 9999998555 8999999999998 88999999999999999999985 7899999999999999999999998
Q ss_pred CCeE--------EEEEEEeCCCcEEEcCHHHHHHHHHHhhc
Q 029584 157 ASEI--------EVGVVSKENPEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 157 ~~~i--------ei~iv~~~~~~~~~~~~~~i~~~~~~~~~ 189 (191)
++++ +|++|++++ |++++++||++++.++.+
T Consensus 238 sg~~e~vr~~~~~v~vi~~dg--~~~l~~~ei~~~~~~~~~ 276 (291)
T 2jay_A 238 TGGPDLVRGIFPTAVIIDADG--AVDVPESRIAELARAIIE 276 (291)
T ss_dssp ----------CCEEEEEETTE--EEECCHHHHHHHHHHC--
T ss_pred CCCcccccccCCEEEEEECCC--eEEcCHHHHHHHHHHHHH
Confidence 8876 599999984 999999999999998863
No 34
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=8.4e-40 Score=259.47 Aligned_cols=168 Identities=16% Similarity=0.274 Sum_probs=156.4
Q ss_pred cccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 5 LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 5 l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.| .+||++++|
T Consensus 25 ~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~p~~v~ll 99 (234)
T 3unf_H 25 VVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY-----QGHVGASLV 99 (234)
T ss_dssp EEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEE
T ss_pred EeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc-----CCCccEEEE
Confidence 355689999999999999999999999999999999999999999999999999999999998654 469999999
Q ss_pred EEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEE
Q 029584 85 VLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 163 (191)
Q Consensus 85 v~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~ 163 (191)
|||||+ +||+||.+||+|++.++++.|+|+|++.++++||+.| +++||++||++++++||..+.++|..++ +++|+
T Consensus 100 vaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~ 176 (234)
T 3unf_H 100 VGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF--QPNMTLEAAQELLVEAITAGILSDLGSGGNVDAC 176 (234)
T ss_dssp EEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred EEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEE
Confidence 999998 7899999999999999999999999999999999998 4799999999999999999999998765 89999
Q ss_pred EEEeCCCcEEEcCHHHHHH
Q 029584 164 VVSKENPEFRVLSIEEIDE 182 (191)
Q Consensus 164 iv~~~~~~~~~~~~~~i~~ 182 (191)
+++++| ++.+++.+++.
T Consensus 177 vi~~dg--~~~l~~~~i~~ 193 (234)
T 3unf_H 177 VITAGG--AKLQRALSTPT 193 (234)
T ss_dssp EEESSC--EEEEEEEECCC
T ss_pred EEECCC--EEEeCceeccc
Confidence 999995 89988877653
No 35
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.1e-40 Score=256.06 Aligned_cols=172 Identities=16% Similarity=0.194 Sum_probs=158.8
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
.++.+++++||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++++++++++.+ .|||++++
T Consensus 24 ~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~ 98 (199)
T 3unf_N 24 TAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY-----REDLLAHL 98 (199)
T ss_dssp TEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT-----TTTCCCCE
T ss_pred ceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-----CCCceEEE
Confidence 3778899999999999999999999999999999999999999999999999999999999999654 46999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceecee-eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHK-ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIE 161 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ie 161 (191)
||||||++++|+||. |+|++..+. ++++|+|++.++++||++|+ ++||++||++++++||..+.+||..++ +++
T Consensus 99 lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d~~sg~~i~ 174 (199)
T 3unf_N 99 IVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEECRRFTTNAITLAMNRDGSSGGVIY 174 (199)
T ss_dssp EEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC--SSCCHHHHHHHHHHHHHHHHHHCTTCCSCEE
T ss_pred EEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHHHHHhccccCCCeE
Confidence 999999867899999 999987775 55569999999999999984 899999999999999999999999775 899
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHH
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHL 184 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~ 184 (191)
|++|++++..++.++++||++++
T Consensus 175 v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 175 LVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp EEEECSSCEEEEEECGGGSCCCC
T ss_pred EEEEcCCCEEEEEcCcccCcccc
Confidence 99999998779999999998765
No 36
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.5e-39 Score=251.96 Aligned_cols=161 Identities=14% Similarity=0.258 Sum_probs=149.7
Q ss_pred ccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEE
Q 029584 6 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMV 85 (191)
Q Consensus 6 ~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv 85 (191)
+.+++++||++|++|++|++||..+|++.|.++++.+++.|+++++++++++.++++|++.+ |+++ .|||++++||
T Consensus 35 ~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lv 110 (213)
T 1iru_M 35 IHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTIL--YSRR--FFPYYVYNII 110 (213)
T ss_dssp EEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HHTT--TSCCCEEEEE
T ss_pred EecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HhhC--CCCceEEEEE
Confidence 44579999999999999999999999999999999999999999999999999999999998 6655 7999999999
Q ss_pred EEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHHHhhhcccCCCC
Q 029584 86 LSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK-------NDPAFTFQETVQTAISTLQSVLQEDFKAS 158 (191)
Q Consensus 86 ~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~-------~~~~~s~eea~~l~~~~l~~~~~~d~~~~ 158 (191)
||||++++|+||.+||+|++.++++.|+|+|++.++++||+.|+ +.++||++||++++++||..+.++|..++
T Consensus 111 aG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~ 190 (213)
T 1iru_M 111 GGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTG 190 (213)
T ss_dssp EEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSC
T ss_pred EEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccC
Confidence 99997567999999999999999999999999999999999953 24799999999999999999999998765
Q ss_pred -eEEEEEEEeCCC
Q 029584 159 -EIEVGVVSKENP 170 (191)
Q Consensus 159 -~iei~iv~~~~~ 170 (191)
+++|++|++++.
T Consensus 191 ~~i~v~vi~~~g~ 203 (213)
T 1iru_M 191 DALRICIVTKEGI 203 (213)
T ss_dssp SEEEEEEEETTEE
T ss_pred CcEEEEEEcCCCe
Confidence 899999999874
No 37
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=4.1e-39 Score=250.14 Aligned_cols=168 Identities=15% Similarity=0.227 Sum_probs=153.1
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
+++.+++++||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.+++++++.+. |.. ...|||++++
T Consensus 25 ~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~-~~~-~~~~p~~~~~ 102 (201)
T 1iru_K 25 IVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLA-DCL-RSRTPYHVNL 102 (201)
T ss_dssp TEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HHH-TSSSCCCEEE
T ss_pred cEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHH-hcCCCccEEE
Confidence 57888999999999999999999999999999999999999999999999999999999987652 222 2347999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
||||||++++|+||.+||+|++.++++.|+|+|++.++++||+.| +++||++||++++++||..+.+||..++ +++|
T Consensus 103 lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v 180 (201)
T 1iru_K 103 LLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFILNLPTFSV 180 (201)
T ss_dssp EEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEE
T ss_pred EEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHHHHhhccccCCceEE
Confidence 999999767899999999999999999999999999999999998 4789999999999999999999999775 8999
Q ss_pred EEEEeCCCcEEEcCH
Q 029584 163 GVVSKENPEFRVLSI 177 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~ 177 (191)
++|+++| ++.+++
T Consensus 181 ~vi~~~g--~~~~~~ 193 (201)
T 1iru_K 181 RIIDKNG--IHDLDN 193 (201)
T ss_dssp EEEETTE--EECCCC
T ss_pred EEEcCCC--eEEeec
Confidence 9999986 776653
No 38
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=8.8e-40 Score=263.99 Aligned_cols=178 Identities=14% Similarity=0.218 Sum_probs=164.2
Q ss_pred CccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHHHHHhhhhcCcc
Q 029584 3 DKLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRF-----KYGYEMPVDVLAKWIADKSQVYTQHAYMR 77 (191)
Q Consensus 3 s~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~t~~~~~r 77 (191)
+.++.+++++||++|++|++|+++|..+|++.|.++++.+++.|++ +++++++++.+++++++++ |+++.++|
T Consensus 64 g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~ 141 (266)
T 1g0u_M 64 GSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMN 141 (266)
T ss_dssp TTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTC
T ss_pred CceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHH--HHhccCCC
Confidence 3577888999999999999999999999999999999999999998 9999999999999999998 67777889
Q ss_pred cccceeEEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHHhhhccc
Q 029584 78 PLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP---AFTFQETVQTAISTLQSVLQED 154 (191)
Q Consensus 78 P~~v~~iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~---~~s~eea~~l~~~~l~~~~~~d 154 (191)
||+|++||||||++++|+||.+||+|++.++++.|+|+|++.++++||+.|++.+ +||++||++++++||..+.+||
T Consensus 142 P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd 221 (266)
T 1g0u_M 142 PLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRD 221 (266)
T ss_dssp CCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHB
T ss_pred CceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998568999999999999999999999999999999999985211 8999999999999999999999
Q ss_pred CCCC-eEEEEEEEeCCCcEEEcCHHHHHHH
Q 029584 155 FKAS-EIEVGVVSKENPEFRVLSIEEIDEH 183 (191)
Q Consensus 155 ~~~~-~iei~iv~~~~~~~~~~~~~~i~~~ 183 (191)
..++ +++|++|++++ +++++++++|+.+
T Consensus 222 ~~sg~~i~v~vI~k~~-g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 222 ARSSRNFSLAIIDKNT-GLTFKKNLQVENM 250 (266)
T ss_dssp TTCCSEEEEEEEETTT-EEEEEEEEECCCC
T ss_pred CCCCCcEEEEEEECCC-CeEEcCHHHhhhh
Confidence 8765 89999999983 2999999888776
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-38 Score=250.55 Aligned_cols=161 Identities=16% Similarity=0.324 Sum_probs=149.7
Q ss_pred ccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 6 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYG-YEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 6 ~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
+.+++++||++|++|++|+++|..+|++.|.++++.+++.|+++++ ++++++.+++.+++.+ |+++ ++||++++|
T Consensus 35 i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l--y~~r--~~P~~v~~i 110 (222)
T 1ryp_M 35 INSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLL--YGKR--FFPYYVHTI 110 (222)
T ss_dssp EEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTT--TSCCCEEEE
T ss_pred ecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--HhcC--CCCceEEEE
Confidence 4678999999999999999999999999999999999999999999 9999999999999998 5443 789999999
Q ss_pred EEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhc---------------CCCCCCHHHHHHHHHHHHHh
Q 029584 85 VLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMK---------------NDPAFTFQETVQTAISTLQS 149 (191)
Q Consensus 85 v~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~---------------~~~~~s~eea~~l~~~~l~~ 149 (191)
|||||++++|+||.+||+|++.++++.|+|+|++.++++||+.++ +.++||+|||++++++||..
T Consensus 111 vaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~ 190 (222)
T 1ryp_M 111 IAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTS 190 (222)
T ss_dssp EEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 999997567999999999999999999999999999999999853 35899999999999999999
Q ss_pred hhcccCCCC-eEEEEEEEeCCC
Q 029584 150 VLQEDFKAS-EIEVGVVSKENP 170 (191)
Q Consensus 150 ~~~~d~~~~-~iei~iv~~~~~ 170 (191)
+.+||..++ +++|++|++++.
T Consensus 191 a~~rd~~sg~~i~v~vi~~~g~ 212 (222)
T 1ryp_M 191 ATERHIQVGDGLEILIVTKDGV 212 (222)
T ss_dssp HHHHBTTCCSEEEEEEEETTEE
T ss_pred HHHhcccCCCcEEEEEEcCCCe
Confidence 999998765 899999999874
No 40
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.3e-38 Score=249.54 Aligned_cols=164 Identities=18% Similarity=0.187 Sum_probs=151.7
Q ss_pred cccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 5 LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 5 l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.| .|||++++|
T Consensus 25 ~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~p~~v~~l 99 (222)
T 1ryp_I 25 IVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYLI 99 (222)
T ss_dssp EEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEEE
T ss_pred eeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc-----CCCCCeeEE
Confidence 355678999999999999999999999999999999999999999999999999999999998654 479999999
Q ss_pred EEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEE
Q 029584 85 VLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 163 (191)
Q Consensus 85 v~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~ 163 (191)
|||||+ +||+||.+||+|++.++++.|+|+|++.++++||+.| +++||++||++++++||..+.+||..++ +++|+
T Consensus 100 vaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~ 176 (222)
T 1ryp_I 100 VAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVC 176 (222)
T ss_dssp EEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEE
T ss_pred EEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEE
Confidence 999998 7899999999999999999999999999999999998 4789999999999999999999998765 89999
Q ss_pred EEEeCCCcEEEcCH
Q 029584 164 VVSKENPEFRVLSI 177 (191)
Q Consensus 164 iv~~~~~~~~~~~~ 177 (191)
+++++++ ++.+.+
T Consensus 177 vi~~~g~-~~~~~~ 189 (222)
T 1ryp_I 177 VMEIGKD-AEYLRN 189 (222)
T ss_dssp EEETTSC-EEEEEE
T ss_pred EEECCCC-EEEEec
Confidence 9999863 666543
No 41
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.8e-38 Score=246.19 Aligned_cols=163 Identities=14% Similarity=0.174 Sum_probs=151.4
Q ss_pred cccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeE
Q 029584 5 LLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAM 84 (191)
Q Consensus 5 l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~i 84 (191)
++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++++++ ++++.+++.+++.+|.|+++ |++++|
T Consensus 34 ~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~-----~~~~~l 107 (205)
T 1ryp_H 34 YIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-----LTAGII 107 (205)
T ss_dssp EEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT-----CCEEEE
T ss_pred EEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC-----ceEEEE
Confidence 677889999999999999999999999999999999999999999999 99999999999999988652 999999
Q ss_pred EEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEE
Q 029584 85 VLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVG 163 (191)
Q Consensus 85 v~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~ 163 (191)
|||||+++||+||.+||+|++.++++.|+|+|++.++++||++| +++||++||++++++||..+.+||..++ +++|+
T Consensus 108 vaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~ 185 (205)
T 1ryp_H 108 VAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMV 185 (205)
T ss_dssp EEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC--CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEE
T ss_pred EEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEE
Confidence 99999767899999999999999999999999999999999998 4789999999999999999999998765 89999
Q ss_pred EEEeCCCcEEEc
Q 029584 164 VVSKENPEFRVL 175 (191)
Q Consensus 164 iv~~~~~~~~~~ 175 (191)
+|++++...+.+
T Consensus 186 vi~~~g~~~~~~ 197 (205)
T 1ryp_H 186 VLTAAGVERLIF 197 (205)
T ss_dssp EEETTEEEEEEE
T ss_pred EEcCCCEEEEEe
Confidence 999987533334
No 42
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=4.2e-38 Score=245.14 Aligned_cols=163 Identities=17% Similarity=0.272 Sum_probs=149.1
Q ss_pred CCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEEEE
Q 029584 8 HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLS 87 (191)
Q Consensus 8 ~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv~G 87 (191)
+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.+ |+++ ..||++++||||
T Consensus 36 ~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r--~~P~~v~~lvaG 111 (205)
T 1iru_J 36 TTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKR--FGPYYTEPVIAG 111 (205)
T ss_dssp ESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTT--TSCCSCCCEEEE
T ss_pred ecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhc--CCCceEEEEEEE
Confidence 458999999999999999999999999999999999999999999999999999999999 7765 349999999999
Q ss_pred EcC-CCCCeEEEECCCcceece-eeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEEE
Q 029584 88 IDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGV 164 (191)
Q Consensus 88 ~d~-~~~p~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~i 164 (191)
||+ +++|+||.+||+|++.++ .++|+|+|++.++++||+.| +++||++||++++++||..+.++|..++ +++|++
T Consensus 112 ~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~v 189 (205)
T 1iru_J 112 LDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHI 189 (205)
T ss_dssp ECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEEE
T ss_pred EeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHhCcccCCceEEEE
Confidence 995 478999999999999766 56999999999999999998 4789999999999999999999998765 899999
Q ss_pred EEeCCCcEEEcC
Q 029584 165 VSKENPEFRVLS 176 (191)
Q Consensus 165 v~~~~~~~~~~~ 176 (191)
|++++..++.++
T Consensus 190 i~~~g~~~~~~~ 201 (205)
T 1iru_J 190 IEKDKITTRTLK 201 (205)
T ss_dssp EESSBEEEEEBC
T ss_pred EcCCCEEEEEee
Confidence 999975455443
No 43
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.5e-38 Score=252.07 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=152.9
Q ss_pred ccccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCccccccee
Q 029584 4 KLLDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVA 83 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~ 83 (191)
.++.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.| .+||++++
T Consensus 53 ~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~-----~~~~gv~l 127 (261)
T 3nzj_H 53 PIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY-----QGHIGAYL 127 (261)
T ss_dssp TEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----TTCSCEEE
T ss_pred CeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh-----cCcccEEE
Confidence 5677899999999999999999999999999999999999999999999999999999999988543 47999999
Q ss_pred EEEEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEE
Q 029584 84 MVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEV 162 (191)
Q Consensus 84 iv~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei 162 (191)
||||||+ .||+||.+||+|++.++++.|+|+|++.++++||++| .++||+|||++++++||..+.++|..++ +++|
T Consensus 128 lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev 204 (261)
T 3nzj_H 128 IVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW--KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 204 (261)
T ss_dssp EEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEE
T ss_pred EEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEE
Confidence 9999998 7899999999999999999999999999999999998 4899999999999999999999998775 8999
Q ss_pred EEEEeCCCcEEEcCH
Q 029584 163 GVVSKENPEFRVLSI 177 (191)
Q Consensus 163 ~iv~~~~~~~~~~~~ 177 (191)
++|+++++ ++.+.+
T Consensus 205 ~vI~kdg~-~~~~~~ 218 (261)
T 3nzj_H 205 CVMEIGKD-AEYLRN 218 (261)
T ss_dssp EEEETTSC-EEEEEE
T ss_pred EEEECCCc-EEEecc
Confidence 99999985 555443
No 44
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.4e-37 Score=242.02 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=147.6
Q ss_pred CCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEEEE
Q 029584 8 HTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLS 87 (191)
Q Consensus 8 ~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv~G 87 (191)
+++++||++|+ |++|+++|..+|++.+.++++.+++.|+++++++++++.+++.+++.+ |+++. .||++++||||
T Consensus 36 ~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~~--~P~~v~~lvaG 110 (204)
T 1ryp_J 36 SNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERRF--GPYFVGPVVAG 110 (204)
T ss_dssp ESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTTT--SCCCEEEEEEE
T ss_pred eCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhcC--CCceEEEEEEE
Confidence 45899999999 999999999999999999999999999999999999999999999999 77753 39999999999
Q ss_pred EcC-CCCCeEEEECCCcceece-eeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEEE
Q 029584 88 IDE-ECGPRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGV 164 (191)
Q Consensus 88 ~d~-~~~p~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~i 164 (191)
||+ +++|+||.+||+|++.++ .++|+|+|++.++++||+.| +++||++||++++++||..+.++|..++ +++|++
T Consensus 111 ~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~v 188 (204)
T 1ryp_J 111 INSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--EPNLEPEDLFETISQALLNAADRDALSGWGAVVYI 188 (204)
T ss_dssp ECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--CSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEE
T ss_pred EeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--CCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEEE
Confidence 996 478999999999999776 56999999999999999998 4789999999999999999999998765 899999
Q ss_pred EEeCCCcEEEc
Q 029584 165 VSKENPEFRVL 175 (191)
Q Consensus 165 v~~~~~~~~~~ 175 (191)
|++++..++.+
T Consensus 189 i~~~g~~~~~~ 199 (204)
T 1ryp_J 189 IKKDEVVKRYL 199 (204)
T ss_dssp EESSCEEEEEE
T ss_pred EcCCCEEEEEe
Confidence 99998545444
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.2e-37 Score=244.11 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=151.0
Q ss_pred ccCCCCcceEEecCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccceeEE
Q 029584 6 LDHTSVTHLFPITKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMV 85 (191)
Q Consensus 6 ~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~~iv 85 (191)
+.+++++||++|++|++|++||..+|++.+.++++.+++.|+++++++++++.+++.+++.++.| .+||++++||
T Consensus 26 ~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~-----~~~~~v~llv 100 (234)
T 1iru_I 26 VADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRY-----RGYIGAALVL 100 (234)
T ss_dssp EEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT-----TTCSCEEEEE
T ss_pred eccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-----CCCCceeEEE
Confidence 44578999999999999999999999999999999999999999999999999999999988654 3599999999
Q ss_pred EEEcCCCCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-eEEEEE
Q 029584 86 LSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-EIEVGV 164 (191)
Q Consensus 86 ~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~iei~i 164 (191)
||||+ .||+||.+||+|++.++++.|+|+|++.++++||++| +++||++||++++++||..+.++|..++ +++|++
T Consensus 101 aG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~v 177 (234)
T 1iru_I 101 GGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF--RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177 (234)
T ss_dssp EEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC--CTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEE
T ss_pred EEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEE
Confidence 99998 7899999999999999999999999999999999998 4789999999999999999999998765 899999
Q ss_pred EEeCCCcEEEcCHH
Q 029584 165 VSKENPEFRVLSIE 178 (191)
Q Consensus 165 v~~~~~~~~~~~~~ 178 (191)
+++++ ++.+.+.
T Consensus 178 i~k~g--~~~~~~~ 189 (234)
T 1iru_I 178 ISKNK--LDFLRPY 189 (234)
T ss_dssp EETTE--EECCSEE
T ss_pred EECCc--EEEEcce
Confidence 99985 7766643
No 46
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.97 E-value=2.1e-30 Score=196.27 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=125.8
Q ss_pred ccccCCCCcceEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccce
Q 029584 4 KLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 82 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~ 82 (191)
+++.+++++||++| ++|++|+++|..+|++.+.++++.+++.|+.+ +.+.++++.+.+++++..|||+++
T Consensus 24 ~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~~ 94 (171)
T 1m4y_A 24 STVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------LTKAAVELAKDWRTDRVLRRLEAL 94 (171)
T ss_dssp TEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------HHHHHHHHHHHHHHCTTGGGCCCE
T ss_pred CEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------HHHHHHHHHHHHHHhCCCCceEEE
Confidence 67888999999999 99999999999999999999999999988743 245555555567777778899999
Q ss_pred eEEEEEcCCCCCeEEEECCCcceecee--eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-e
Q 029584 83 AMVLSIDEECGPRLFKCDPAGHFFGHK--ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS-E 159 (191)
Q Consensus 83 ~iv~G~d~~~~p~Ly~~d~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~-~ 159 (191)
+|++ | +|+||.+||+|++.+++ +.|+|+|+++++++||+.|++ ++||. ++++++||+.+.+||..++ +
T Consensus 95 ~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~---~~l~~~al~~a~~rd~~sg~~ 165 (171)
T 1m4y_A 95 LLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA---REIVEKAMTIAGEICIYTNQN 165 (171)
T ss_dssp EEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH---HHHHHHHHHHHHHHCTTCCSC
T ss_pred EEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH---HHHHHHHHHHHHHhCcccCCe
Confidence 9998 5 69999999999999988 999999999999999999842 78986 6789999999999999876 8
Q ss_pred EEEEEE
Q 029584 160 IEVGVV 165 (191)
Q Consensus 160 iei~iv 165 (191)
++|.++
T Consensus 166 i~v~~~ 171 (171)
T 1m4y_A 166 IVIEEV 171 (171)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 888763
No 47
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.97 E-value=4.1e-30 Score=196.32 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=127.8
Q ss_pred cc-ccCCCCcceEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccc
Q 029584 4 KL-LDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGV 81 (191)
Q Consensus 4 ~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v 81 (191)
.+ +.+++++||++| ++|++|+++|..+|++.|.++++.+++.|+ + .+.+.++++.+.++++..+|||++
T Consensus 29 ~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~~~~~~rp~~~ 99 (180)
T 2z3b_A 29 QAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWRSDKVLRKLEA 99 (180)
T ss_dssp TTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHHHCTTGGGCCC
T ss_pred CceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHHhhhCcCcceE
Confidence 45 889999999999 999999999999999999999999999987 3 345555666777888888999999
Q ss_pred eeEEEEEcCCCCCeEEEECCCcceec--eeeeecCCChHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHhhhcccCCCC
Q 029584 82 VAMVLSIDEECGPRLFKCDPAGHFFG--HKATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKAS 158 (191)
Q Consensus 82 ~~iv~G~d~~~~p~Ly~~d~~G~~~~--~~~~a~G~gs~~~~~~Le~~~~~~~-~~s~eea~~l~~~~l~~~~~~d~~~~ 158 (191)
++||+ | +|+||.+||+|++.+ +++.|+|+|+++++++||+.|++.+ +||.|| ++.+||+.+.+||..++
T Consensus 100 ~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~a~~rd~~sg 171 (180)
T 2z3b_A 100 MLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALETAGEICVYTN 171 (180)
T ss_dssp CEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHHHHHHCTTCC
T ss_pred EEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHHHHHhcCccC
Confidence 99999 4 599999999999998 4999999999999999999995211 799999 46799999999999886
Q ss_pred -eEEEEEE
Q 029584 159 -EIEVGVV 165 (191)
Q Consensus 159 -~iei~iv 165 (191)
+++|.+|
T Consensus 172 ~~i~v~~i 179 (180)
T 2z3b_A 172 DQIILEEL 179 (180)
T ss_dssp SCCEEEEE
T ss_pred CeEEEEEE
Confidence 8999887
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.97 E-value=4.1e-30 Score=195.28 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=127.0
Q ss_pred ccccCCCCcceEEe-cCcEEEEEecchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhcCcccccce
Q 029584 4 KLLDHTSVTHLFPI-TKYLGLLATGMTADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVV 82 (191)
Q Consensus 4 ~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~t~~~~~rP~~v~ 82 (191)
.++.+++++||++| ++|++|+++|+.+|++.|.++++.+++.|+. + +.+.++.+.+.+++++..||+ +
T Consensus 24 ~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~r~~--~ 92 (174)
T 1g3k_A 24 NTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---LLKSAVELAKDWRTDRALRKL--E 92 (174)
T ss_dssp TEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---HHHHHHHHHHHHHHSTTGGGC--C
T ss_pred CeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---HHHHHHHHHHHHHhccCcCcc--e
Confidence 47788999999999 9999999999999999999999999999875 2 355566666777787778886 5
Q ss_pred eEEEEEcCCCCCeEEEECCCcceecee---eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhhhcccCCCC-
Q 029584 83 AMVLSIDEECGPRLFKCDPAGHFFGHK---ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKAS- 158 (191)
Q Consensus 83 ~iv~G~d~~~~p~Ly~~d~~G~~~~~~---~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~~~~~~d~~~~- 158 (191)
.+++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||++|+. ++||.+ +++++||+.+.+||..++
T Consensus 93 ~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~~---~l~~~al~~a~~rd~~sg~ 165 (174)
T 1g3k_A 93 AMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSAH---EIVEKSLRIAGDICVFTNT 165 (174)
T ss_dssp CEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCHH---HHHHHHHHHHHHHCTTCCS
T ss_pred EEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCHH---HHHHHHHHHHHHhccccCC
Confidence 6888887 69999999999999988 999999999999999999942 789854 799999999999999875
Q ss_pred eEEEEEEE
Q 029584 159 EIEVGVVS 166 (191)
Q Consensus 159 ~iei~iv~ 166 (191)
+++|.+|+
T Consensus 166 ~i~v~~i~ 173 (174)
T 1g3k_A 166 NFTIEELP 173 (174)
T ss_dssp CCEEEEEC
T ss_pred ceEEEEec
Confidence 89999986
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=75.10 E-value=7.6 Score=26.59 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=26.0
Q ss_pred CCeEEEEEEEeCCCc-EEEcCHHHHHHHHHHhh
Q 029584 157 ASEIEVGVVSKENPE-FRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 157 ~~~iei~iv~~~~~~-~~~~~~~~i~~~~~~~~ 188 (191)
++.+-|.|++++++. ++.++|+++-++..++.
T Consensus 66 ~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH
Confidence 446889999988664 58999999999887775
No 50
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=72.03 E-value=11 Score=24.40 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcccCCCCeEEEEEEEeCCCcEEEcCHHHHHHHHHHhh
Q 029584 131 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 188 (191)
Q Consensus 131 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~iei~iv~~~~~~~~~~~~~~i~~~~~~~~ 188 (191)
.++++.++..+.++..++.. ....+.|.+++++|.-+.+.+.+|++.-++-+.
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~-----~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD-----NEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC-----SSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC-----CCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 36789999998887766532 123699999999887688888889998876443
No 51
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=51.95 E-value=22 Score=23.40 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.1
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
|.+.+++++.|+.+++++|..++..-
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~r 56 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIR 56 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHH
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhc
Confidence 67778766679999999999987643
No 52
>2dao_A Transcription factor ETV6; ETS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.22 E-value=26 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=22.3
Q ss_pred EEEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 161 EVGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 161 ei~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
-|.+.+++++.|+.++|++|..++..-
T Consensus 27 ~I~W~~~~~g~Fklvdp~~VArlWG~r 53 (118)
T 2dao_A 27 FIRWEDKESKIFRIVDPNGLARLWGNH 53 (118)
T ss_dssp TEEEEEGGGTEEEESCHHHHHHHHHHH
T ss_pred ceEeeCCCCCeEEEeCHHHHHHHHHhc
Confidence 378888876679999999999987643
No 53
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=39.80 E-value=43 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=21.4
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
|.+++++.+.|+.++|++|..+...-
T Consensus 25 I~W~~~~~g~Fkl~dp~~VArlWG~r 50 (103)
T 3jtg_A 25 MKWENRHEGVFKFLRSEAVAQLWGQK 50 (103)
T ss_dssp EEEEETTTTEEEESSHHHHHHHHHHH
T ss_pred cccccCCCceEEecCHHHHHHHHHhc
Confidence 78888766679999999999887543
No 54
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=37.09 E-value=18 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.8
Q ss_pred CeEEEECCCcceece-eeeecCCChHHHHHHHHHhhcCCCCCCHHHHH
Q 029584 94 PRLFKCDPAGHFFGH-KATSAGLKEQEAINFLEKKMKNDPAFTFQETV 140 (191)
Q Consensus 94 p~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~ 140 (191)
|..|-+|+.|.+... ...-.+.+...+...|++... .+|++.|++
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~--~~~~~~~~I 148 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIE--EDLSLNKHI 148 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHH--HHTSCCHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhch--hhhHHHHHH
Confidence 678999999998764 556677888888888887742 345555544
No 55
>1wwx_A E74-like factor 5 ESE-2B; DNA binding, transcriptional activation and repression, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=35.49 E-value=35 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
|.+.+++.+.|+.+++++|..+...-
T Consensus 29 I~W~~~~~g~Fkl~d~e~VArlWG~r 54 (107)
T 1wwx_A 29 LEWEDREQGIFRVVKSEALAKMWGQR 54 (107)
T ss_dssp CEEEETTTTEEECSCHHHHHHHHHHH
T ss_pred EEeecCCCCEEEecCHHHHHHHHHhc
Confidence 67788766679999999999987543
No 56
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=32.67 E-value=72 Score=23.64 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhhcccCCCCeEEEEEEEeCCC
Q 029584 131 DPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 170 (191)
Q Consensus 131 ~~~~s~eea~~l~~~~l~~~~~~d~~~~~iei~iv~~~~~ 170 (191)
.+.+|+++|.+++..++..+.++.. .+.|.|+|..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~g~---pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKDGR---HVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcCC---CEEEEEEeCCCC
Confidence 4789999999999999999987644 588899987763
No 57
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=32.31 E-value=66 Score=19.56 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 029584 118 QEAINFLEKKMKNDPAFTFQETVQTAIS 145 (191)
Q Consensus 118 ~~~~~~Le~~~~~~~~~s~eea~~l~~~ 145 (191)
..|+-.|..+|+ ..++|+-|.++.|+.
T Consensus 20 PsAYyLL~~~yk-kg~FsL~ELiKFAks 46 (75)
T 2kxe_A 20 PSAYYLLVGHFN-EGKFSLIELIKFAKS 46 (75)
T ss_dssp HHHHHHHHHHHH-TTSSCHHHHHHHHHH
T ss_pred chHHHHHHHHhh-cccccHHHHHHHHHh
Confidence 567788888885 458999999999853
No 58
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=32.24 E-value=29 Score=20.67 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=24.2
Q ss_pred eeecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 029584 110 ATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAIS 145 (191)
Q Consensus 110 ~~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~ 145 (191)
-.+.|+....+...+.+.....++++.++.++.+++
T Consensus 24 L~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 24 LAALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 346788888888888775311246788877766654
No 59
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.95 E-value=1.1e+02 Score=19.76 Aligned_cols=35 Identities=6% Similarity=0.234 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHhhhccc
Q 029584 119 EAINFLEKKMKNDPAFTF--QETVQTAISTLQSVLQED 154 (191)
Q Consensus 119 ~~~~~Le~~~~~~~~~s~--eea~~l~~~~l~~~~~~d 154 (191)
.+..+|..... ...++. .|.++.|++||..+++-+
T Consensus 25 sIIdFL~~sv~-~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 44566666553 234444 568899999999998644
No 60
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=27.55 E-value=51 Score=23.10 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhcccCCCCeEEEEEEEeCCC
Q 029584 132 PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENP 170 (191)
Q Consensus 132 ~~~s~eea~~l~~~~l~~~~~~d~~~~~iei~iv~~~~~ 170 (191)
+.+|.++|.+++..+...+.++.. .+.|.|++..|.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~g~---~v~IaVvD~~G~ 45 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEINV---AVVFSVVDRGGN 45 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTC---CCEEEEEETTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCC---CEEEEEEECCCC
Confidence 468999999999999999976533 588999997663
No 61
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=27.53 E-value=47 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=11.3
Q ss_pred CCCCHHHHHHHHHH
Q 029584 132 PAFTFQETVQTAIS 145 (191)
Q Consensus 132 ~~~s~eea~~l~~~ 145 (191)
|+||.+|-+.+|.+
T Consensus 2 p~mtEEEq~ALA~r 15 (45)
T 3a1q_C 2 PLGSEEEQFALALK 15 (45)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHH
Confidence 67899998888765
No 62
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=26.45 E-value=81 Score=20.82 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.1
Q ss_pred CCCeEEEECCCcceeceeeee
Q 029584 92 CGPRLFKCDPAGHFFGHKATS 112 (191)
Q Consensus 92 ~~p~Ly~~d~~G~~~~~~~~a 112 (191)
.+-.+|..||.|...+.....
T Consensus 132 ~g~~~~~~DPdG~~iel~~~~ 152 (156)
T 3kol_A 132 TGRGVYFYDPDGFMIEIRCDP 152 (156)
T ss_dssp CCEEEEEECTTSCEEEEEECC
T ss_pred CccEEEEECCCCCEEEEEecC
Confidence 355899999999998865433
No 63
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=26.13 E-value=59 Score=20.39 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.9
Q ss_pred CcEEEcCHHHHHHHHHHhhcc
Q 029584 170 PEFRVLSIEEIDEHLTAISER 190 (191)
Q Consensus 170 ~~~~~~~~~~i~~~~~~~~~~ 190 (191)
|+...++++|.+++|.++.-+
T Consensus 12 PkH~iLs~eEk~~lL~~y~i~ 32 (77)
T 1eik_A 12 PEHVILNESEAKRVLKELDAH 32 (77)
T ss_dssp CEEEEECHHHHHHHHHHTTCC
T ss_pred CCEEEcCHHHHHHHHHHcCCC
Confidence 468899999999999998743
No 64
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=25.49 E-value=1.8e+02 Score=20.90 Aligned_cols=54 Identities=22% Similarity=0.214 Sum_probs=42.0
Q ss_pred EEEECCCcceeceeeeecC-CChHHHHHHHHHhhc-----------------CCCCCCHHHHHHHHHHHHHh
Q 029584 96 LFKCDPAGHFFGHKATSAG-LKEQEAINFLEKKMK-----------------NDPAFTFQETVQTAISTLQS 149 (191)
Q Consensus 96 Ly~~d~~G~~~~~~~~a~G-~gs~~~~~~Le~~~~-----------------~~~~~s~eea~~l~~~~l~~ 149 (191)
+..+.|-|+...+.-..+| ..++.+...+++.++ ...++|++.|.+.|.+.|..
T Consensus 72 iId~sPMGCrTGFYlil~G~~~~~~v~~~~~~~l~~Il~~~eVPga~~~qCGny~~HsL~~Ak~~A~~~L~~ 143 (160)
T 1j6x_A 72 VVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDK 143 (160)
T ss_dssp EEEEEECTTSSEEEEEEESCCCHHHHHHHHHHHHHHHTTCSSCTTCSTTTCTTTTSCCHHHHHHHHHHHHHT
T ss_pred eEEECCcCcchhcEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCCCChhcCCChHHCCHHHHHHHHHHHHHh
Confidence 7777899999888888888 666777676665321 13689999999999999976
No 65
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=25.44 E-value=1.5e+02 Score=19.64 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHhhhcccCCCCeEEEEEEEeCCCcEEEcCHHHHHHHHHH
Q 029584 134 FTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 186 (191)
Q Consensus 134 ~s~eea~~l~~~~l~~~~~~d~~~~~iei~iv~~~~~~~~~~~~~~i~~~~~~ 186 (191)
=+.+|++.+.++-|+ ...|-+..-+.+|.-+++++.+++.-.+.+
T Consensus 33 P~ykdLl~lmr~~F~--------~~DIaLNYrD~eGDLIrilddeDv~lmi~~ 77 (107)
T 1oey_J 33 PLLKDLLELTRREFQ--------REDIALNYRDAEGDLVRLLSDEDVALMVRQ 77 (107)
T ss_dssp CCHHHHHHHHHHHHC--------CSSEEEEEECTTSCEEECCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc--------ccceeeeeecCCCCEEEEcchHHHHHHHHH
Confidence 377899999888776 336888888999988899999999877764
No 66
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=25.16 E-value=67 Score=18.48 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHhhhcccC
Q 029584 119 EAINFLEKKMKNDPAF--TFQETVQTAISTLQSVLQEDF 155 (191)
Q Consensus 119 ~~~~~Le~~~~~~~~~--s~eea~~l~~~~l~~~~~~d~ 155 (191)
.+..+|..... ...+ ...|.++.|++||..+++-+.
T Consensus 8 sIi~FL~~~~~-~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLR-HGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcc-cCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 34556666543 2334 445688999999999987543
No 67
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=25.07 E-value=1.7e+02 Score=20.02 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHHhhhcccCCC-CeEEEEEEEeCCCcEE
Q 029584 132 PAFTFQETVQTAISTLQSVLQEDFKA-SEIEVGVVSKENPEFR 173 (191)
Q Consensus 132 ~~~s~eea~~l~~~~l~~~~~~d~~~-~~iei~iv~~~~~~~~ 173 (191)
.+++.+..++....||..++.+...+ .+++|. ++.+++.++
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~-id~~tG~~~ 57 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQ-IDRKSGDFD 57 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEE-EETTTTEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEE-EECCCCeEE
Confidence 57999999999999999998765443 366655 344433343
No 68
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.44 E-value=52 Score=20.68 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=17.7
Q ss_pred CcEEEcCHHHHHHHHHHhhcc
Q 029584 170 PEFRVLSIEEIDEHLTAISER 190 (191)
Q Consensus 170 ~~~~~~~~~~i~~~~~~~~~~ 190 (191)
|++..++++|.+++|.++.-+
T Consensus 10 PkH~iLs~eEk~~lL~~y~i~ 30 (78)
T 1hmj_A 10 PKHEIVPKEEVEEILKRYNIK 30 (78)
T ss_pred CCeEECCHHHHHHHHHHcCCC
Confidence 458899999999999998643
No 69
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=24.02 E-value=73 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEcCHHHHHHHHHHh
Q 029584 162 VGVVSKENPEFRVLSIEEIDEHLTAI 187 (191)
Q Consensus 162 i~iv~~~~~~~~~~~~~~i~~~~~~~ 187 (191)
|.+.++++ .|+.+++++|..++..-
T Consensus 25 I~Wt~~~g-eFklvdpe~VArLWG~r 49 (157)
T 1hbx_G 25 ICWTSNDG-QFKLLQAEEVARLWGIR 49 (157)
T ss_dssp EEECSSSS-CEEETTHHHHHHHHHHG
T ss_pred eEEeCCCC-EEEecCcHHHHHHHHhc
Confidence 56777776 69999999999998654
No 70
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=23.65 E-value=1.4e+02 Score=18.52 Aligned_cols=36 Identities=6% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCCCCC--HHHHHHHHHHHHHhhhcccC
Q 029584 119 EAINFLEKKMKNDPAFT--FQETVQTAISTLQSVLQEDF 155 (191)
Q Consensus 119 ~~~~~Le~~~~~~~~~s--~eea~~l~~~~l~~~~~~d~ 155 (191)
.+..+|..... ...++ ..|.++.|++||..+++-+.
T Consensus 13 sIi~FL~~~~~-~~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 13 LIVNYFSSIVE-KKEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhcc-cCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 44566666543 23444 45688999999999987543
No 71
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=23.04 E-value=62 Score=21.59 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q 029584 133 AFTFQETVQTAISTLQSVL 151 (191)
Q Consensus 133 ~~s~eea~~l~~~~l~~~~ 151 (191)
+++.|||++.|+..|++-.
T Consensus 21 ~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 21 GDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CSSHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhhcCC
Confidence 5899999999999998864
No 72
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=22.26 E-value=71 Score=20.31 Aligned_cols=20 Identities=35% Similarity=0.484 Sum_probs=17.4
Q ss_pred CcEEEcCHHHHHHHHHHhhc
Q 029584 170 PEFRVLSIEEIDEHLTAISE 189 (191)
Q Consensus 170 ~~~~~~~~~~i~~~~~~~~~ 189 (191)
|.+..++++|.++++.++.-
T Consensus 18 PkH~vLs~eE~~~ll~~y~i 37 (84)
T 4ayb_H 18 PKHEVLSIDEAYKILKELGI 37 (84)
T ss_dssp CEEEECCHHHHHHHHHHHTC
T ss_pred CCeEECCHHHHHHHHHHhcC
Confidence 56899999999999998863
No 73
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=21.85 E-value=2.1e+02 Score=20.44 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=43.5
Q ss_pred CeEEEECCCcceeceeeeecC-CChHHHHHHHHHhhc-----------------CCCCCCHHHHHHHHHHHHHhh
Q 029584 94 PRLFKCDPAGHFFGHKATSAG-LKEQEAINFLEKKMK-----------------NDPAFTFQETVQTAISTLQSV 150 (191)
Q Consensus 94 p~Ly~~d~~G~~~~~~~~a~G-~gs~~~~~~Le~~~~-----------------~~~~~s~eea~~l~~~~l~~~ 150 (191)
-.+..+.|-|+...+.-..+| ..++.+...+++.++ ...++|++.|.+.|.+.|...
T Consensus 74 ~~iId~sPMGCrTGFYl~l~G~~~~~~v~~~~~~~l~~il~~~eVPga~~~qCGny~~hsL~~Ak~~A~~~L~~~ 148 (157)
T 1j98_A 74 FDIIDISPMGCQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQD 148 (157)
T ss_dssp EEEEEEEECTTSSEEEEEEEECCCHHHHHHHHHHHHHHHTTCCSCTTCSTTTCTTTTCCCHHHHHHHHHHHHTSC
T ss_pred CCEEEeCCcCcccccEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCCCCChhcCCChHHCCHHHHHHHHHHHHHHh
Confidence 457888899999888888888 666777776665321 136899999999999988654
No 74
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=20.51 E-value=1.1e+02 Score=22.93 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.7
Q ss_pred eecCCChHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 029584 111 TSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQ 148 (191)
Q Consensus 111 ~a~G~gs~~~~~~Le~~~~~~~~~s~eea~~l~~~~l~ 148 (191)
.+.|.....+...+.+.....++++.++.++.|++.|.
T Consensus 172 ~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~L~ 209 (212)
T 2ztd_A 172 VGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLG 209 (212)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 57899999998888876321357889998888877663
No 75
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=20.26 E-value=1.5e+02 Score=19.40 Aligned_cols=37 Identities=11% Similarity=0.058 Sum_probs=24.6
Q ss_pred CCCeEEEECCCcceeceeeeecCCChHHHHHHHHHhh
Q 029584 92 CGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM 128 (191)
Q Consensus 92 ~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~ 128 (191)
+-|.++.+|+.|....................|++..
T Consensus 105 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~ 141 (152)
T 3gl3_A 105 GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL 141 (152)
T ss_dssp SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence 4699999999999865433323334456667777664
Done!