BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029585
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZ69|SAP7_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein
7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1
Length = 175
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 102 SPASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPVQ 146
SP+++ L + RS+ E+D V K ++K+SLK PS S P Q
Sbjct: 28 SPSNMNLCSKCYRSLRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQ 72
>sp|Q46L21|MURQ_PROMT N-acetylmuramic acid 6-phosphate etherase OS=Prochlorococcus
marinus (strain NATL2A) GN=murQ PE=3 SV=1
Length = 310
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 49 DQEPDPDPDLQLAS-----AAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSP 103
D D D D++L + A RL G A+ + S + +K+G +
Sbjct: 180 DSTLDNDIDIRLITGPEILAGSTRLKAGTATKMALNIIS----TSVMIKLGKVYGNRMID 235
Query: 104 ASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPV------QNVIEHEHDLLS 157
S+ DK LDR+I + D G+V K++ LKK + S + + +VI+ + L
Sbjct: 236 LSVSNDKLLDRAIGILFDIGSVDKVTAVQLLKKTNGSVKLSLLIALSGMDVIDAKQLLND 295
Query: 158 EKGN 161
KGN
Sbjct: 296 SKGN 299
>sp|A1TH50|MAK_MYCVP Maltokinase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=mak PE=3 SV=1
Length = 441
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 37 MRVSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCFGRASAGPDSP 88
+R + YQ LV+ P+ D D +LA A+N + R A+F C G A+ D P
Sbjct: 348 LRSFEYAAYQKLVELAPEQDADGRLADRARNWVDRNSAAF-CAGYAAVAGDDP 399
>sp|Q83KP2|ARAG_SHIFL Arabinose import ATP-binding protein AraG OS=Shigella flexneri
GN=araG PE=3 SV=4
Length = 504
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLAIGQWQMVE 153
>sp|A3Q7Y6|MAK_MYCSJ Maltokinase OS=Mycobacterium sp. (strain JLS) GN=mak PE=3 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
>sp|Q32HC7|ARAG_SHIDS Arabinose import ATP-binding protein AraG OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF3|ARAG_ECOLI Arabinose import ATP-binding protein AraG OS=Escherichia coli
(strain K12) GN=araG PE=1 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF4|ARAG_ECOL6 Arabinose import ATP-binding protein AraG OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|P0AAF5|ARAG_ECO57 Arabinose import ATP-binding protein AraG OS=Escherichia coli
O157:H7 GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q1B1L0|MAK_MYCSS Maltokinase OS=Mycobacterium sp. (strain MCS) GN=mak PE=3 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
>sp|A1UNJ0|MAK_MYCSK Maltokinase OS=Mycobacterium sp. (strain KMS) GN=mak PE=3 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 27 LGQKNDDDKPMR-------VSPWNQYQ-LVDQEPDPDPDLQLASAAKNRLSRGCASFVCF 78
L ++ D PMR + YQ L+++ D D QLA+ A+ ++R +SF C
Sbjct: 333 LDERRRPDSPMRDVAGMLRSYEYAAYQRLIERGGDAQHDKQLAARAREWVNRNVSSF-CD 391
Query: 79 GRASA-GPDSPSHLKVGPAQNQDVSPASLGLDKR 111
G A+A G D H ++ A D + +G + R
Sbjct: 392 GYAAASGTDPRDHAELLAAYELDKAVYEVGYEAR 425
>sp|Q322L1|ARAG_SHIBS Arabinose import ATP-binding protein AraG OS=Shigella boydii
serotype 4 (strain Sb227) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q3Z2S7|ARAG_SHISS Arabinose import ATP-binding protein AraG OS=Shigella sonnei
(strain Ss046) GN=araG PE=3 SV=1
Length = 504
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL L LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q0WQM8|FB58_ARATH F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2
SV=1
Length = 444
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 119 EDDDGNVVKLSLKSSLKKPSNSDS--VPVQNVIEHEHDLLSEKGNDIAGHTERRKVQWTD 176
+DDDGN+ S + P N ++ VP + ++H D SE G+ + G RR + D
Sbjct: 138 QDDDGNLFFFS-SPHPQIPCNENTSLVPTRYHVQHTTDSFSEIGSPLCGFICRRGKRNLD 196
Query: 177 T 177
T
Sbjct: 197 T 197
>sp|Q1RAN8|ARAG_ECOUT Arabinose import ATP-binding protein AraG OS=Escherichia coli
(strain UTI89 / UPEC) GN=araG PE=3 SV=2
Length = 504
Score = 30.4 bits (67), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL + LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQIKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|Q0TGT7|ARAG_ECOL5 Arabinose import ATP-binding protein AraG OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=araG PE=3 SV=1
Length = 504
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 8 GGFFSSSASGYSKGLTLLFLGQKNDDDKPMRVSPWNQYQLVD 49
GG + S Y GL + LG D D P++ Q+Q+V+
Sbjct: 112 GGIVNRSLLNYEAGLQIKHLGMDIDPDTPLKYLSIGQWQMVE 153
>sp|A2C236|MURQ_PROM1 N-acetylmuramic acid 6-phosphate etherase OS=Prochlorococcus
marinus (strain NATL1A) GN=murQ PE=3 SV=1
Length = 310
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 49 DQEPDPDPDLQLAS-----AAKNRLSRGCASFVCFGRASAGPDSPSHLKVGPAQNQDVSP 103
D D D D++L + A RL G A+ + S + +K+G +
Sbjct: 180 DSTLDNDIDIRLITGPEILAGSTRLKAGTATKMALNIIS----TSVMIKLGKVYGNRMID 235
Query: 104 ASLGLDKRLDRSIDVEDDDGNVVKLSLKSSLKKPSNSDSVPV------QNVIEHEHDLLS 157
S+ DK LDR+I + D G+V K + LKK + S + + +VI+ + L
Sbjct: 236 LSVSNDKLLDRAIGILFDIGSVDKDTAVRLLKKTNGSVKLSLLIALSGMDVIDAKQLLND 295
Query: 158 EKGN 161
KGN
Sbjct: 296 SKGN 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,666,245
Number of Sequences: 539616
Number of extensions: 3194239
Number of successful extensions: 5636
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5620
Number of HSP's gapped (non-prelim): 32
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)