BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029586
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TRZ4|ACDA1_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 1
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA1 PE=3 SV=1
Length = 806
Score = 37.4 bits (85), Expect = 0.057, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGRS + H ME K L + D W ++
Sbjct: 698 TAETWQEAIPMMAKACIRPSDNSMGRSIKLTHWMELHKKYL-----GKDPEDWW----KF 748
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + EALLK++ S G ++ WK +
Sbjct: 749 VRNEADLPLAKREALLKELESKHGWEIDWKKK 780
>sp|Q8THW2|ACDA3_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 3
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA3 PE=3 SV=1
Length = 805
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + LP+ + P ++ MGRS + H ME K L V E D W ++
Sbjct: 697 TAETWQEALPMMAKACIRPSDNNMGRSIKLTHWMELSKKYLG--VEPE---DWW----KF 747
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + E LLK++ + QG ++ WK +
Sbjct: 748 VRNEADLPLAKREELLKRLEAEQGWEIDWKRK 779
>sp|Q49163|ACDA2_METMA Acetyl-CoA decarbonylase/synthase complex subunit alpha 2
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=cdhA2 PE=1 SV=4
Length = 807
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGR+ + H ME K L D W ++
Sbjct: 698 TAETWQEAIPMMAKACIRPSDNSMGRAIKLTHWMELHKKYLG----GSEPEDWW----KF 749
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + + EALLK++ + +G ++ WK +
Sbjct: 750 VRNEADLPLANREALLKKLEAERGWEIDWKKK 781
>sp|Q8TJC6|ACDA2_METAC Acetyl-CoA decarbonylase/synthase complex subunit alpha 2
OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A) GN=cdhA2 PE=3 SV=1
Length = 805
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 44 TNNTCAKDLPVESVHVSSPEESIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARW 103
T T + +P+ + P ++ MGRS + H ME K L V E D W ++
Sbjct: 697 TAETWQEAIPMMAKACIRPSDNNMGRSIKLTHWMELSKKYLG--VEPE---DWW----KF 747
Query: 104 LKNKGDLTMCS-EALLKQVRSYQGSDL-WKDR 133
++N+ DL + E LLK++ + G ++ WK +
Sbjct: 748 VRNEADLPLAKREELLKRLEAEHGWEIDWKRK 779
>sp|Q9BV73|CP250_HUMAN Centrosome-associated protein CEP250 OS=Homo sapiens GN=CEP250 PE=1
SV=2
Length = 2442
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1 MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
++ + + V L + LD+E R+ ++++S + H+L + A++L V
Sbjct: 1575 LIKELEGQRETQRVALTHLTLDLEERSQELQAQSSQI-HDLESHSTVLARELQERDQEVK 1633
Query: 61 SPEESIMGRSRENEHLMEFL 80
S E I R+ EHL + L
Sbjct: 1634 SQREQIEELQRQKEHLTQDL 1653
>sp|Q54BW6|TTC27_DICDI Tetratricopeptide repeat protein 27 homolog OS=Dictyostelium
discoideum GN=ttc27 PE=3 SV=1
Length = 853
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 65/129 (50%), Gaps = 12/129 (9%)
Query: 52 LPVESVHVSSPEE----SIMGRSRENEHLMEFLGKILQQVVRSESSADMWGLYARWLKNK 107
L + + HV S ++ I G S+ + + E G++ ++ ++ D+W LY+ +
Sbjct: 701 LSIIADHVVSKDQLDKQGISG-SKMEKTVSELFGRLTSKLT---NNPDLWRLYSSYHHRL 756
Query: 108 GDLTMCSEALLKQVRSYQGSDLWKDRDRFKRFSYASLELCKVYMEISSSSGSRRELFAAE 167
G++ + K RS + + ++ F++ + LC +Y + ++S +++A+
Sbjct: 757 GNVDKAIDLQQKACRSCESAHWEGEQSTFEKVLQFNTTLCDLYFQYPNTSN----IYSAK 812
Query: 168 MHLKNVLKQ 176
+ +K++LK+
Sbjct: 813 LKVKSILKK 821
>sp|P18074|ERCC2_HUMAN TFIIH basal transcription factor complex helicase XPD subunit
OS=Homo sapiens GN=ERCC2 PE=1 SV=1
Length = 760
Score = 31.2 bits (69), Expect = 4.2, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 58 HVSSP-------EESIMGRSRENEHLMEFLGKIL---------QQVVRSESSADMWGLYA 101
H+++P +E++ G R EH + FL ++L Q VV+ A + GL
Sbjct: 304 HLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQ 363
Query: 102 RWLKNKGDLTMCSEALLKQVRSYQGSDL 129
R + L C+E L + + + +DL
Sbjct: 364 RVCIQRKPLRFCAERLRSLLHTLEITDL 391
>sp|Q60452|ERCC2_CRIGR TFIIH basal transcription factor complex helicase XPD subunit
OS=Cricetulus griseus GN=ERCC2 PE=1 SV=1
Length = 760
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 58 HVSSP-------EESIMGRSRENEHLMEFLGKIL---------QQVVRSESSADMWGLYA 101
H+++P +E++ G R EH + FL ++L Q VV+ A + GL
Sbjct: 304 HLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQ 363
Query: 102 RWLKNKGDLTMCSEALLKQVRSYQGSDL 129
R + L C+E L + + + +DL
Sbjct: 364 RVCIQRKPLRFCAERLRSLLHTLEIADL 391
>sp|A6QLJ0|ERCC2_BOVIN TFIIH basal transcription factor complex helicase XPD subunit
OS=Bos taurus GN=ERCC2 PE=2 SV=1
Length = 760
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 58 HVSSP-------EESIMGRSRENEHLMEFLGKIL---------QQVVRSESSADMWGLYA 101
H+++P +E++ G R EH + FL ++L Q VV+ A + GL
Sbjct: 304 HLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQ 363
Query: 102 RWLKNKGDLTMCSEALLKQVRSYQGSDL 129
R + L C+E L + + + SDL
Sbjct: 364 RVCIQRKPLRFCAERLRSLLYTLEISDL 391
>sp|O08811|ERCC2_MOUSE TFIIH basal transcription factor complex helicase XPD subunit
OS=Mus musculus GN=Ercc2 PE=2 SV=2
Length = 760
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 58 HVSSP-------EESIMGRSRENEHLMEFLGKIL---------QQVVRSESSADMWGLYA 101
H+++P +E++ G R EH + FL ++L Q VV+ A + GL
Sbjct: 304 HLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQ 363
Query: 102 RWLKNKGDLTMCSEALLKQVRSYQGSDL 129
R + L C+E L + + + +DL
Sbjct: 364 RVCIQRKPLRFCAERLRSLLHTLEIADL 391
>sp|Q60952|CP250_MOUSE Centrosome-associated protein CEP250 OS=Mus musculus GN=Cep250 PE=1
SV=4
Length = 2414
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MVLNMTNNKRIDTVLLERIVLDMEGRTSIIESESCRTTHNLNRTNNTCAKDLPVESVHVS 60
M+ + + + V L + LD+E R+ ++++S + H L + AK+L V+
Sbjct: 1567 MITELEGQREMQRVALTHLTLDLEERSQELQAQSSQL-HELENHSTHLAKELQERDQEVT 1625
Query: 61 SPEESIMGRSRENEHLMEFLGKILQQVV 88
S + I ++ E L + L + Q++V
Sbjct: 1626 SQRQQIDELQKQQEQLAQALERKGQELV 1653
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,839,968
Number of Sequences: 539616
Number of extensions: 2312598
Number of successful extensions: 5990
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5988
Number of HSP's gapped (non-prelim): 20
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)