BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029587
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
           At5g01750
 pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
           From Arabidopsis Thaliana At5g01750
          Length = 217

 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 99/191 (51%), Gaps = 16/191 (8%)

Query: 6   PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHXXXXXXXXXXXXXXX 65
           P Y A  P P+D  + +K   LT G+    D +G+++++V                    
Sbjct: 30  PKYCA--PYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKEP-------VFGLHDKRVL 80

Query: 66  XDSAGNPLISVYRQD---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
            D +G P++++  +       WQ F+G   ++++L++ V R+     +T+ +VF+   N 
Sbjct: 81  LDGSGTPVVTLREKXVSXHDRWQVFRGGSTDQRDLLYTVKRSSXLQLKTKLDVFL-GHNK 139

Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPA 180
           ++    F +KGS  ++SC +Y G S  I+AQ    + +Q +++ ++ F +T++P +++ A
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYP-NVDYA 198

Query: 181 VIVALVVIFLD 191
            I +LVVI  D
Sbjct: 199 FIASLVVILDD 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,033,554
Number of Sequences: 62578
Number of extensions: 177918
Number of successful extensions: 330
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 1
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)