BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029587
         (191 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8GWL2|LOR7_ARATH Protein LURP-one-related 7 OS=Arabidopsis thaliana GN=At2g30270
           PE=2 SV=1
          Length = 182

 Score =  162 bits (411), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/177 (50%), Positives = 117/177 (66%), Gaps = 14/177 (7%)

Query: 14  IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPL 73
           IPVDLF SKK PGL+ GD+GFADSS  +++ + ++    KS              +G PL
Sbjct: 18  IPVDLFASKKLPGLSSGDLGFADSSEHLVFILRKSSSSLKSLLDS----------SGVPL 67

Query: 74  ISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKG 133
            S+ R   G+W+  KGD  + K+L+  V RT K  ++TE EV    E+SE+      IKG
Sbjct: 68  FSISRLHNGVWELHKGDVEKRKDLVLTVKRTSKRFSKTESEVSFAGESSEN----LVIKG 123

Query: 134 SPFQKSCTIYRGNSIIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALVVIFL 190
            PFQKSCTIY  +SI+AQTSLMYKL+QIYV R+KFRLTIFP SI+ +++VA+V IFL
Sbjct: 124 VPFQKSCTIYSQDSIVAQTSLMYKLRQIYVGRSKFRLTIFPGSIDHSLVVAMVAIFL 180


>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750
           PE=1 SV=1
          Length = 217

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 106/191 (55%), Gaps = 16/191 (8%)

Query: 6   PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVV 65
           P Y A  P P+D+ + +K   LT G+    D +G+++++V       K        + V+
Sbjct: 30  PKYCA--PYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKV-------KEPVFGLHDKRVL 80

Query: 66  VDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS 122
           +D +G P++++  +   +   WQ F+G   ++++L++ V R+     +T+ +VF+   N 
Sbjct: 81  LDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL-GHNK 139

Query: 123 EDSASHFTIKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPA 180
           ++    F +KGS  ++SC +Y G S  I+AQ    + +Q +++ ++ F +T++P +++ A
Sbjct: 140 DEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYP-NVDYA 198

Query: 181 VIVALVVIFLD 191
            I +LVVI  D
Sbjct: 199 FIASLVVILDD 209


>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740
           PE=2 SV=2
          Length = 194

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 104/197 (52%), Gaps = 17/197 (8%)

Query: 1   MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRR 60
           MA   P + A  P P++L + +K   LT G+    D +G+++++V        S S +R 
Sbjct: 1   MAIVSPNFCA--PYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKEPLF---SISDKR- 54

Query: 61  KRVVVVDSAGNPLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRT-MKTLTRTEFEVF 116
              +++D+   P++++      L   W  ++G   ++ +L++ + R+ M  + + + ++F
Sbjct: 55  ---ILLDAYDTPILTLRENKVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIF 111

Query: 117 IVDENSEDSASHFTIKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFP 174
           +   N E     F +KGS   +SC +Y G S  I+AQ    +  Q I + ++ F +T++P
Sbjct: 112 LA-HNKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYP 170

Query: 175 TSIEPAVIVALVVIFLD 191
            +++ A IV+L+VI  D
Sbjct: 171 -NVDFAFIVSLIVILDD 186


>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840
           PE=2 SV=2
          Length = 224

 Score = 67.0 bits (162), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 94/182 (51%), Gaps = 14/182 (7%)

Query: 15  PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74
           PVDL + +K   +T G+    ++ G+++++V       K       ++ +++D  G  ++
Sbjct: 37  PVDLAIVRKVLKITDGNFVITNAEGNLLFKV-------KDPFFSLHEKRILMDGFGTKVL 89

Query: 75  SVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTI 131
           ++  +   +   W  F+G   EE +L++ V R+      T+ +VF+ D N E     + +
Sbjct: 90  TLKGKIMTMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVFLAD-NIEQKKCDYRL 148

Query: 132 KGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALVVIF 189
           +G   + SC +Y G+S  I+AQ      +Q +   ++ F LT+ P +++ A I +L+VI 
Sbjct: 149 EGVWLETSCFVYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNP-NVDYAFIASLIVIL 207

Query: 190 LD 191
           ++
Sbjct: 208 VE 209


>sp|Q9ZQR8|LURP1_ARATH Protein LURP1 OS=Arabidopsis thaliana GN=LURP1 PE=2 SV=1
          Length = 207

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 92/185 (49%), Gaps = 14/185 (7%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           SP PV L + +K   +T G+     + G ++++V           S   KR+++ D +G 
Sbjct: 14  SPNPVGLAIVRKVMKITDGNFVITSADGKLLFKVKDPLF------SLHGKRILL-DCSGA 66

Query: 72  PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASH 128
            ++++  +   +   WQ F+G   EE  L++ V R+       + EVF+ + N E+    
Sbjct: 67  KVLTLRGKMMTMHDRWQVFRGGSTEEGALLYTVKRSSMIQLAPKLEVFLAN-NVEEKICD 125

Query: 129 FTIKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALV 186
           F +KG+    SC +Y G+S  IIA       ++  +  ++ F +T+   +++ A I +L+
Sbjct: 126 FKVKGAWLDDSCVVYAGDSDTIIAHMCGKQTMRGFFFGKDHFSVTV-DKNVDYAFIASLI 184

Query: 187 VIFLD 191
           VI ++
Sbjct: 185 VILVE 189


>sp|Q9LSQ1|LOR13_ARATH Protein LURP-one-related 13 OS=Arabidopsis thaliana GN=At3g16900
           PE=3 SV=1
          Length = 185

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 37/184 (20%)

Query: 13  PIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72
           P P+DL ++        GD    D++G+ +++V       K+       + ++VD   +P
Sbjct: 23  PQPLDLTIT--------GDT-VKDATGNKVFKV-------KTPLFGLHNKRILVDPNDSP 66

Query: 73  LISVY-----RQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSAS 127
           ++++      + D+  WQ ++G D ++K  IF V R+     +T  EVF+    + +S+ 
Sbjct: 67  IVTMKMKVTSKHDR--WQVYRGSDLDDK--IFTVKRSSTVQLKTRVEVFLKHNQTRESSC 122

Query: 128 HFTIKGSPFQKSCTIYRGNS--IIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVAL 185
            FTIKG   +++CTIY  +S  IIA         Q+Y    +   TI+P +++ A IV L
Sbjct: 123 DFTIKGRFMKRACTIYVADSTKIIA---------QVYEGHERLVATIYP-NVDYAFIVTL 172

Query: 186 VVIF 189
           + IF
Sbjct: 173 IFIF 176


>sp|Q9LYM3|LOR14_ARATH Protein LURP-one-related 14 OS=Arabidopsis thaliana GN=At3g56180
           PE=2 SV=2
          Length = 204

 Score = 47.4 bits (111), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 88/185 (47%), Gaps = 15/185 (8%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           +P P+DL V +K    ++      D SG+++ +++             RKRV+  D AG 
Sbjct: 25  NPYPMDLLVKRKVQNFSKDYYEVFDPSGNLLLQIDGQAW------GFNRKRVMR-DPAGF 77

Query: 72  PLISVYRQDKGL---WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENS--EDSA 126
            ++S+ ++   L   W+   G+  E ++L+F V ++     +T  +VF+ + N+  + + 
Sbjct: 78  TILSMRQKGLALKNKWEVHGGESKEREDLLFTVQQSQAVSLKTSVDVFLPENNNVKKTNT 137

Query: 127 SHFTIKGSPFQKSCTIYRGNSIIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALV 186
             F   G     S  +++ +++IA     +        +  F++ + P  ++ A I+AL+
Sbjct: 138 CDFHASGGYSNISFKVFKADALIAGVGFTWG--SFCKGKYNFKVRVNP-EVDYAFIIALL 194

Query: 187 VIFLD 191
           V+  D
Sbjct: 195 VMVDD 199


>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640
           PE=2 SV=1
          Length = 196

 Score = 41.6 bits (96), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 80/159 (50%), Gaps = 17/159 (10%)

Query: 36  DSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDDGE-E 94
           +++G++++RV+   +  + N       +V++D++G PL+S+ R+   L   +   DGE E
Sbjct: 43  NANGELVFRVDNYMNCPRDN-------IVLMDASGFPLLSIRRKKLSLGDCWMVYDGETE 95

Query: 95  KELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQTSL 154
           ++ IF   + +  ++  +   ++    S      + I+GS  Q+SC I        +T+ 
Sbjct: 96  RDPIFTARKNVSIISNRKSLAWV----SAKKTVLYEIEGSYGQRSCKILDERRNKKKTAE 151

Query: 155 MYKLQQIY----VRRNKFRLTIFPTSIEPAVIVALVVIF 189
           + + + +       ++ ++L I  + +EP V +AL +I 
Sbjct: 152 IKRKETVIGGVAFGKDVYKL-IVESEMEPRVAMALTIIL 189


>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590
           PE=2 SV=2
          Length = 221

 Score = 40.8 bits (94), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 23/170 (13%)

Query: 36  DSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK----GLWQGFKGDD 91
           DS+GD+IYRV+       + +  R + ++++D  GN L+ ++R  K      W  ++ +D
Sbjct: 57  DSNGDLIYRVD-------NYARTRPEELILMDKDGNSLLLMHRTKKITLVDSWGIYEAND 109

Query: 92  --GEEK-----ELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYR 144
             GE K         + N  M  L+     +  V   S D  + + IKGS   KSC I  
Sbjct: 110 TKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIV- 168

Query: 145 GNSIIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVAL---VVIFLD 191
            +  + +T +  K +++  +  +F   +F   + P     L   +V+ LD
Sbjct: 169 -HVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALVLLLD 217


>sp|B3H5L1|LOR9_ARATH Protein LURP-one-related 9 OS=Arabidopsis thaliana GN=At3g10986
           PE=3 SV=1
          Length = 197

 Score = 38.9 bits (89), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 22/189 (11%)

Query: 12  SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71
           +P   +L V ++   L R      D S ++I+ V+          + RRKRV+  D+AG 
Sbjct: 11  NPYTTELVVRRRRESLKRERYDVFDLSNNLIFTVD------GGIWNIRRKRVLR-DAAGI 63

Query: 72  PLISVYRQDKGL------WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFI-VDENSED 124
           PL+S+  + KGL      W+ +KGD  E   L+F          +T  +V +  D++S D
Sbjct: 64  PLLSM--RTKGLVPMRYNWEVYKGDSTESDNLLFSAREPNLLSFKTSLDVTLPPDQSSTD 121

Query: 125 SAS---HFTIKGSPFQKSCTIYR--GNSIIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEP 179
            +S    F   G     S  ++    N+++A+    +    +      F++ + P  ++ 
Sbjct: 122 ISSVEPDFQTFGRYIGSSFKLFEPIHNTLLAEVVHDFTWGGLIKGSYSFKVRVNP-YVDF 180

Query: 180 AVIVALVVI 188
           A +VAL+VI
Sbjct: 181 AFVVALLVI 189


>sp|Q8PCJ2|SECA_XANCP Protein translocase subunit SecA OS=Xanthomonas campestris pv.
           campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
           GN=secA PE=3 SV=1
          Length = 912

 Score = 30.8 bits (68), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 18  LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
           L V   YPG+   D   A  + D+ Y  N              S+++  QR+    +VD 
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
             + LI   R    +     G   E  EL  +VNR +  LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252


>sp|B0RV96|SECA_XANCB Protein translocase subunit SecA OS=Xanthomonas campestris pv.
           campestris (strain B100) GN=secA PE=3 SV=1
          Length = 912

 Score = 30.8 bits (68), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 18  LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
           L V   YPG+   D   A  + D+ Y  N              S+++  QR+    +VD 
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
             + LI   R    +     G   E  EL  +VNR +  LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252


>sp|Q4UQX9|SECA_XANC8 Protein translocase subunit SecA OS=Xanthomonas campestris pv.
           campestris (strain 8004) GN=secA PE=3 SV=1
          Length = 912

 Score = 30.8 bits (68), Expect = 5.0,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 18  LFVSKKYPGLTRGDIGFADSSGDVIYRVNR---------TQHQSKSNSSQRRKRVVVVDS 68
           L V   YPG+   D   A  + D+ Y  N              S+++  QR+    +VD 
Sbjct: 152 LSVGVVYPGMPHSD-KHAAYAADITYGTNNEFGFDYLRDNMALSRADRYQRKLHYAIVDE 210

Query: 69  AGNPLISVYRQDKGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFE 114
             + LI   R    +     G   E  EL  +VNR +  LT+ E E
Sbjct: 211 VDSILIDEARTPLII----SGPADESPELYIRVNRIVPQLTKQESE 252


>sp|B7N5L9|ARNC_ECOLU Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
           OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
           GN=arnC PE=3 SV=1
          Length = 322

 Score = 30.8 bits (68), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 96  ELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKS 139
           ELI +  +  ++L + E+E+ ++D+ S D+++H  ++ S  + S
Sbjct: 25  ELIRRTTKACESLGK-EYEILLIDDGSSDNSAHMLVEASQAENS 67


>sp|P0CAP5|REM13_ARATH B3 domain-containing protein REM13 OS=Arabidopsis thaliana GN=REM13
           PE=2 SV=2
          Length = 1045

 Score = 30.8 bits (68), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 21/139 (15%)

Query: 52  SKSNSSQRRKRVVVVDSAGNP-LISVYRQDKGL------WQGF-KGDD---GEE--KELI 98
           ++ N+  +   + ++D+ G   LIS+ R  KG       W+ F + +D   GE    EL+
Sbjct: 665 ARKNNIDKPGMIYLLDTDGTKWLISLQRDKKGTMSLGKGWKEFAEANDFKLGESFTMELV 724

Query: 99  FKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTI--------YRGNSIIA 150
           ++    M +L RTEF     +E    S+ H T + SP  K+  +         +   +I 
Sbjct: 725 WEDTTPMLSLLRTEFRSSKANEKESISSEHKTRESSPTIKNRIVTPALTPEDVKACKLIL 784

Query: 151 QTSLMYKLQQIYVRRNKFR 169
            +  M K++ +   RN  +
Sbjct: 785 PSQFMKKIRTVDKERNHLK 803


>sp|Q8KA45|FLIF_BUCAP Flagellar M-ring protein OS=Buchnera aphidicola subsp. Schizaphis
           graminum (strain Sg) GN=fliF PE=3 SV=1
          Length = 556

 Score = 30.4 bits (67), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 14  IPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNS 56
           +P+++   KK   L R  IG++   GD +Y VN +  Q   NS
Sbjct: 404 VPINVEQIKKIKNLVREAIGYSKVRGDSVYVVNESFFQKNKNS 446


>sp|Q10914|GLR2_CAEEL Glutamate receptor 2 OS=Caenorhabditis elegans GN=glr-2 PE=1 SV=3
          Length = 977

 Score = 30.0 bits (66), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 47  RTQHQSKSNSSQRRK----------RVVVVDSAGNPLISVYRQDKGLWQGFKGDDGEEKE 96
           R   + K +SSQ RK          R  VV     P + + R++ G  +  KG+D  E  
Sbjct: 463 RYVQEKKKDSSQTRKGILPSKPWQLRFNVVTVLVKPFVMLKRRNPGEPE-LKGNDRFEGY 521

Query: 97  LIFKVNRTMKTLTRTEFEVFIVDEN 121
            I  +N   K +T  E++VFI D N
Sbjct: 522 CIDLLNLLAKNITGFEYDVFISDGN 546


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,146,279
Number of Sequences: 539616
Number of extensions: 2620809
Number of successful extensions: 5927
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5911
Number of HSP's gapped (non-prelim): 26
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)