Query 029587
Match_columns 191
No_of_seqs 113 out of 432
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 15:18:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029587.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029587hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.8E-46 3.9E-51 301.6 17.5 177 2-188 2-187 (187)
2 COG4894 Uncharacterized conser 100.0 2.6E-34 5.7E-39 218.0 7.3 147 15-191 5-154 (159)
3 PF03803 Scramblase: Scramblas 99.6 3.1E-14 6.8E-19 116.8 18.4 164 16-191 22-215 (221)
4 COG4894 Uncharacterized conser 98.1 8.7E-06 1.9E-10 62.6 6.0 99 12-120 26-140 (159)
5 KOG0621 Phospholipid scramblas 97.8 0.00036 7.8E-09 59.9 11.2 155 28-191 97-275 (292)
6 PF04525 Tub_2: Tubby C 2; In 97.6 0.00072 1.6E-08 54.1 9.8 60 12-79 35-99 (187)
7 PF03803 Scramblase: Scramblas 96.7 0.0047 1E-07 50.4 6.2 65 30-105 106-177 (221)
8 PF02974 Inh: Protease inhibit 77.8 9.1 0.0002 27.5 5.8 34 58-91 59-92 (99)
9 PF13860 FlgD_ig: FlgD Ig-like 65.1 11 0.00024 25.7 3.7 16 62-77 28-43 (81)
10 PF04790 Sarcoglycan_1: Sarcog 64.6 13 0.00028 31.6 4.7 32 59-90 116-152 (264)
11 PF15529 Toxin_49: Putative to 62.6 9.6 0.00021 27.1 3.0 29 20-50 22-50 (89)
12 TIGR02150 IPP_isom_1 isopenten 59.3 20 0.00043 27.6 4.6 56 32-87 1-60 (158)
13 COG4998 Predicted endonuclease 55.2 29 0.00063 27.7 4.8 38 137-179 22-59 (209)
14 KOG0621 Phospholipid scramblas 52.3 50 0.0011 28.6 6.3 48 30-79 188-236 (292)
15 PRK15393 NUDIX hydrolase YfcD; 50.2 45 0.00097 26.2 5.4 59 31-90 11-73 (180)
16 PRK12816 flgG flagellar basal 50.1 29 0.00062 29.4 4.4 40 28-75 98-138 (264)
17 KOG3950 Gamma/delta sarcoglyca 49.7 19 0.0004 30.5 3.1 20 60-79 138-157 (292)
18 TIGR03784 marine_sortase sorta 48.3 32 0.00069 27.3 4.2 19 60-78 112-131 (174)
19 COG5436 Predicted integral mem 46.3 53 0.0011 26.0 5.0 17 63-79 93-109 (182)
20 cd06166 Sortase_D_5 Sortase D 46.1 35 0.00077 25.2 4.0 18 60-77 68-85 (126)
21 cd05828 Sortase_D_4 Sortase D 45.5 34 0.00073 25.3 3.8 19 60-78 65-83 (127)
22 PRK12691 flgG flagellar basal 45.4 48 0.001 27.8 5.1 40 28-75 98-138 (262)
23 TIGR02488 flgG_G_neg flagellar 43.6 36 0.00079 28.5 4.1 40 28-75 96-136 (259)
24 PRK12694 flgG flagellar basal 43.1 39 0.00084 28.4 4.2 40 28-75 98-138 (260)
25 smart00634 BID_1 Bacterial Ig- 42.7 75 0.0016 21.9 5.0 14 64-77 56-69 (92)
26 PHA00458 single-stranded DNA-b 42.3 17 0.00037 30.2 1.8 48 27-74 91-139 (233)
27 cd03676 Nudix_hydrolase_3 Memb 41.8 68 0.0015 24.9 5.2 22 27-48 2-23 (180)
28 PF05593 RHS_repeat: RHS Repea 38.8 53 0.0011 18.9 3.1 31 35-75 1-31 (38)
29 PLN02552 isopentenyl-diphospha 38.7 85 0.0018 26.4 5.5 59 30-89 23-91 (247)
30 PF12396 DUF3659: Protein of u 38.5 90 0.0019 20.7 4.5 45 31-77 12-57 (64)
31 PRK12693 flgG flagellar basal 38.1 59 0.0013 27.3 4.5 40 28-75 98-138 (261)
32 PF01167 Tub: Tub family; Int 37.6 2.2E+02 0.0047 23.8 7.8 62 82-146 25-88 (246)
33 PF11906 DUF3426: Protein of u 37.0 69 0.0015 24.1 4.4 40 37-76 64-104 (149)
34 PRK06655 flgD flagellar basal 36.6 48 0.001 27.4 3.7 42 29-78 104-145 (225)
35 PRK12634 flgD flagellar basal 35.1 66 0.0014 26.6 4.3 18 61-78 124-141 (221)
36 PF12690 BsuPI: Intracellular 34.9 28 0.0006 24.1 1.7 17 31-47 27-43 (82)
37 PRK10523 lipoprotein involved 34.3 58 0.0013 27.3 3.8 27 39-72 81-107 (234)
38 PRK12633 flgD flagellar basal 34.3 58 0.0013 27.0 3.8 19 60-78 130-148 (230)
39 PF12142 PPO1_DWL: Polyphenol 33.3 20 0.00043 23.1 0.7 17 30-47 10-26 (54)
40 PF09000 Cytotoxic: Cytotoxic; 32.4 1.3E+02 0.0029 21.2 4.7 50 19-79 18-69 (85)
41 PF08269 Cache_2: Cache domain 30.6 12 0.00026 26.0 -0.7 37 31-74 58-94 (95)
42 PRK12817 flgG flagellar basal 29.6 78 0.0017 26.6 3.9 37 31-75 98-134 (260)
43 PRK12812 flgD flagellar basal 29.4 89 0.0019 26.5 4.2 35 33-73 146-182 (259)
44 PF09008 Head_binding: Head bi 29.4 85 0.0018 23.2 3.5 43 23-78 63-105 (114)
45 cd05830 Sortase_D_5 Sortase D 29.3 91 0.002 23.3 3.9 19 60-78 69-87 (137)
46 PF09629 YorP: YorP protein; 29.1 84 0.0018 20.8 3.1 31 17-48 30-60 (71)
47 PF06357 Omega-toxin: Omega-at 28.4 50 0.0011 19.3 1.7 11 36-46 27-37 (37)
48 COG5436 Predicted integral mem 28.3 1.5E+02 0.0032 23.5 4.9 52 12-72 76-127 (182)
49 cd02885 IPP_Isomerase Isopente 27.9 75 0.0016 24.3 3.3 55 32-87 4-63 (165)
50 PF12091 DUF3567: Protein of u 27.7 56 0.0012 23.0 2.2 40 5-49 7-46 (85)
51 PF11141 DUF2914: Protein of u 27.4 81 0.0018 20.8 2.9 17 61-77 46-62 (66)
52 PRK12813 flgD flagellar basal 27.3 1E+02 0.0022 25.6 4.1 18 61-78 126-143 (223)
53 PRK12640 flgF flagellar basal 27.3 75 0.0016 26.6 3.4 37 31-75 87-123 (246)
54 PF04170 NlpE: NlpE N-terminal 26.6 99 0.0021 21.4 3.4 11 63-73 73-83 (87)
55 PRK12818 flgG flagellar basal 26.6 92 0.002 26.1 3.8 37 31-75 102-138 (256)
56 TIGR03406 FeS_long_SufT probab 26.0 80 0.0017 25.1 3.1 29 16-50 24-52 (174)
57 PF13511 DUF4124: Domain of un 25.2 64 0.0014 20.3 2.1 17 31-47 15-31 (60)
58 smart00412 Cu_FIST Copper-Fist 24.5 38 0.00082 20.4 0.8 24 58-81 14-37 (39)
59 PF08829 AlphaC_N: Alpha C pro 24.3 34 0.00075 27.3 0.8 32 31-69 92-123 (194)
60 PF09475 Dot_icm_IcmQ: Dot/Icm 24.1 26 0.00055 28.0 0.0 58 6-80 96-153 (179)
61 PRK00122 rimM 16S rRNA-process 23.7 2.1E+02 0.0046 22.2 5.2 14 65-78 110-123 (172)
62 PF15072 DUF4539: Domain of un 23.5 2.6E+02 0.0057 19.5 5.1 25 60-84 20-44 (86)
63 PRK12819 flgG flagellar basal 23.4 1.4E+02 0.003 25.1 4.3 37 30-74 99-135 (257)
64 TIGR03066 Gem_osc_para_1 Gemma 23.4 2.7E+02 0.006 20.5 5.3 19 59-77 91-109 (111)
65 COG4703 Uncharacterized protei 23.3 86 0.0019 21.3 2.4 31 136-173 21-51 (74)
66 cd06165 Sortase_A_1 Sortase A 23.0 1.4E+02 0.003 21.9 3.8 19 60-78 67-85 (127)
67 smart00800 uDENN Domain always 22.8 99 0.0021 21.3 2.8 12 32-43 71-82 (89)
68 TIGR02273 16S_RimM 16S rRNA pr 22.4 1.9E+02 0.0041 22.3 4.7 15 64-78 104-118 (165)
69 PF02974 Inh: Protease inhibit 22.2 2.9E+02 0.0063 19.5 5.8 24 25-48 57-80 (99)
70 PF13098 Thioredoxin_2: Thiore 21.8 83 0.0018 21.8 2.3 19 31-49 85-103 (112)
71 smart00108 B_lectin Bulb-type 21.7 2.4E+02 0.0051 20.0 4.8 15 30-44 64-78 (114)
72 PF01643 Acyl-ACP_TE: Acyl-ACP 21.7 1.7E+02 0.0037 24.3 4.5 40 31-84 97-137 (261)
73 PRK05842 flgD flagellar basal 21.2 1.8E+02 0.0039 25.3 4.6 17 61-77 168-184 (295)
74 PRK05874 L-fuculose-phosphate 20.9 1.1E+02 0.0023 25.0 3.1 47 23-74 22-68 (217)
75 smart00652 eIF1a eukaryotic tr 20.8 3E+02 0.0064 19.0 5.2 36 38-82 4-40 (83)
76 TIGR00156 conserved hypothetic 20.5 1E+02 0.0022 23.4 2.6 19 62-80 74-92 (126)
77 cd00028 B_lectin Bulb-type man 20.5 2.8E+02 0.006 19.8 5.0 14 30-43 65-78 (116)
78 cd00004 Sortase Sortases are c 20.1 1.8E+02 0.004 21.1 4.0 20 60-79 68-87 (128)
79 PF04790 Sarcoglycan_1: Sarcog 20.1 2E+02 0.0044 24.4 4.7 49 17-71 104-154 (264)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.8e-46 Score=301.60 Aligned_cols=177 Identities=32% Similarity=0.586 Sum_probs=108.1
Q ss_pred cccccccCCCCCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEec-ccccCccCccccCceEEEEcCCCCeeEEEeccC
Q 029587 2 AASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNR-TQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (191)
Q Consensus 2 ~~v~~~~c~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g-~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~ 80 (191)
++|+++|| +++|++|+||||.+++++++|+|+|++|+++|+|+| +.+ ++ ++++.|+|++|+||++|++|+
T Consensus 2 ~vv~~~~~--~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~------s~-~~~~~l~D~~G~~L~~i~~k~ 72 (187)
T PF04525_consen 2 VVVDAQYC--SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFF------SI-GKKRTLMDASGNPLFTIRRKL 72 (187)
T ss_dssp -SS-GGGB---SS-EEEEEE----------EEEEETTS-EEEEEE--SCT------TB-TTEEEEE-TTS-EEEEEE---
T ss_pred cEECHHHc--CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEeccc------CC-CCEEEEECCCCCEEEEEEeee
Confidence 68999999 899999999999999988999999999999999999 777 66 555699999999999999985
Q ss_pred ---CccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCC----CCCCcceEEEEcccCCceeEEE-ECCeEEEEE
Q 029587 81 ---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN----SEDSASHFTIKGSPFQKSCTIY-RGNSIIAQT 152 (191)
Q Consensus 81 ---~~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~----~~~~~~~~~v~G~~~~~~~~I~-~~~~~VAeV 152 (191)
+++|++|.+++.++++++|++||++....++++.+|+.... .+.+.++|+|+|||++++|+|+ .+|++||||
T Consensus 73 ~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i 152 (187)
T PF04525_consen 73 FSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEI 152 (187)
T ss_dssp -----EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEE
T ss_pred cccceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEE
Confidence 69999999999877789999999976677899999987432 1346789999999999999999 568999999
Q ss_pred EeeeeeeeEEEeeceEEEEEcCCCCcHHHHHHhhee
Q 029587 153 SLMYKLQQIYVRRNKFRLTIFPTSIEPAVIVALVVI 188 (191)
Q Consensus 153 ~rk~~~~~~~~~~dty~l~V~pg~vD~a~i~alvvI 188 (191)
+||+..++++.|+|+|.|+|+|| +|++|++|||||
T Consensus 153 ~rk~~~k~~~~~~dty~l~V~pg-~D~~lv~alvvi 187 (187)
T PF04525_consen 153 SRKYSSKKWFSGRDTYTLTVAPG-VDQALVVALVVI 187 (187)
T ss_dssp EE----------B-SEEEEE-TT-SBHHHHHHHHHH
T ss_pred ecccceeeEEecCcEEEEEEcCC-CCHHHheeEEeC
Confidence 99999889999999999999999 899999999953
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.6e-34 Score=218.05 Aligned_cols=147 Identities=20% Similarity=0.392 Sum_probs=132.7
Q ss_pred cEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC---CccceeEecCC
Q 029587 15 PVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KGLWQGFKGDD 91 (191)
Q Consensus 15 ~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~---~~~w~~~~~~~ 91 (191)
+.+|.|+||+.|++ ++|.|+|++|+.+|+|+|+++ +. +.++.+.|++|.+|.+|++|+ ++++++-.|++
T Consensus 5 ~~tl~mkQk~~~~g-d~f~I~d~dgE~af~VeGs~f------~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g 76 (159)
T COG4894 5 MITLFMKQKMFSFG-DAFHIYDRDGEEAFKVEGSFF------SI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGG 76 (159)
T ss_pred hHhHhhhhhhhhcc-cceEEECCCCcEEEEEeeeEE------ee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCC
Confidence 56889999999995 599999999999999999998 67 556999999999999999997 59999998886
Q ss_pred CCcceeEEEEEecccCCCcceEEEEEecCCCCCCcceEEEEcccCCceeEEEECCeEEEEEEeeeeeeeEEEeeceEEEE
Q 029587 92 GEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRGNSIIAQTSLMYKLQQIYVRRNKFRLT 171 (191)
Q Consensus 92 ~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~~~~VAeV~rk~~~~~~~~~~dty~l~ 171 (191)
.++.++|+. +++|+++++. ..+|+++||+|+.+|++.+|++++|+|++| |++|+|||.|+
T Consensus 77 -----~~~~vrKK~-tf~Rdk~e~d---------~~~~eihGNi~d~efkl~dg~~~~aeVsKk-----wf~~rdTY~l~ 136 (159)
T COG4894 77 -----TVCEVRKKV-TFSRDKFEID---------GLNWEIHGNIWDDEFKLTDGENVRAEVSKK-----WFSWRDTYHLQ 136 (159)
T ss_pred -----CEEEEEEEE-EEEeeeEEEc---------CCCeEEecceeceEEEEecCCceehhheee-----eEeccceEEEE
Confidence 589999885 7779988883 346999999999999999999999999975 89999999999
Q ss_pred EcCCCCcHHHHHHhheeeeC
Q 029587 172 IFPTSIEPAVIVALVVIFLD 191 (191)
Q Consensus 172 V~pg~vD~a~i~alvvI~~D 191 (191)
|+|+ -|.++|+|++ +|||
T Consensus 137 vapd-e~a~lii~i~-VaLD 154 (159)
T COG4894 137 VAPD-EDALLIIAIA-VALD 154 (159)
T ss_pred EcCc-hhhHHHHHHH-HHHH
Confidence 9999 6999999999 8876
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.64 E-value=3.1e-14 Score=116.78 Aligned_cols=164 Identities=16% Similarity=0.281 Sum_probs=123.8
Q ss_pred EEEEEEEeeceE-------eCCCeEEEcCCCCEEEEEecccccCcc--CccccCceEEEEcCCCCeeEEEeccCC-----
Q 029587 16 VDLFVSKKYPGL-------TRGDIGFADSSGDVIYRVNRTQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK----- 81 (191)
Q Consensus 16 ~~l~vkqk~~s~-------~~~~f~V~D~~G~~vf~V~g~~~~~~~--~~s~~~~~~~l~D~~G~~L~ti~~k~~----- 81 (191)
-.++|+|+.-.+ ..+.|.|+|++|+.+|.+.-..-...| +.+.|+-++.++|+.|+++++++|...
T Consensus 22 ~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C~ 101 (221)
T PF03803_consen 22 DQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSCC 101 (221)
T ss_pred CEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceecc
Confidence 367788886543 348999999999999988654111111 123566678999999999999999752
Q ss_pred ----ccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCCCCCCcceEEEEcc------cCCceeEEEEC-CeEEE
Q 029587 82 ----GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS------PFQKSCTIYRG-NSIIA 150 (191)
Q Consensus 82 ----~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~~~~~~~~~~v~G~------~~~~~~~I~~~-~~~VA 150 (191)
...+++.+.+ +++.+|++++ ..++++++|.-+++ ..-+.|+|. +.++.|.|++. |+.||
T Consensus 102 ~~~~~~~~V~~p~g----~~iG~I~q~~-~~~~~~f~I~d~~~-----~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~vg 171 (221)
T PF03803_consen 102 PCCLQEMEVESPPG----NLIGSIRQPF-SCCRPNFDIFDANG-----NPIFTIKGPCCCCSCCCDWEFEIKDPNGQEVG 171 (221)
T ss_pred cccceeEEEecCCC----cEEEEEEEcC-cccceEEEEEECCC-----ceEEEEeCCcceeccccceeeeeecccCcEEE
Confidence 3444544433 5999999985 78899999975543 456889887 46889999994 89999
Q ss_pred EEEeeeee--eeEEEeeceEEEEEcCCCCcH---HHHHHhheeeeC
Q 029587 151 QTSLMYKL--QQIYVRRNKFRLTIFPTSIEP---AVIVALVVIFLD 191 (191)
Q Consensus 151 eV~rk~~~--~~~~~~~dty~l~V~pg~vD~---a~i~alvvI~~D 191 (191)
+|+|+|.. ++.+...|.|.|+..|. .|. |+++|.+ |+||
T Consensus 172 ~I~k~w~G~~~e~~t~~d~f~i~Fp~~-l~~~~Kalll~a~-~liD 215 (221)
T PF03803_consen 172 SITKKWSGFCRELFTDADNFVIEFPPD-LDVEQKALLLGAA-FLID 215 (221)
T ss_pred EEEEecCCcchhhccccceEEEEcCCC-CCHHHHHHHHHHH-HHhh
Confidence 99999963 35667899999999887 676 6888888 7776
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=8.7e-06 Score=62.64 Aligned_cols=99 Identities=12% Similarity=0.204 Sum_probs=76.2
Q ss_pred CCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC---Ccc-----
Q 029587 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD---KGL----- 83 (191)
Q Consensus 12 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~---~~~----- 83 (191)
...+..+.|.-+.+++.+ .|+|+|+.|.+++.++.+.. +..++ +.+.|++|+ .+.+++|. .+.
T Consensus 26 ~dgE~af~VeGs~f~i~d-tlti~Da~G~~l~~i~~kll------~l~~~-yeI~d~~g~-~~~vrKK~tf~Rdk~e~d~ 96 (159)
T COG4894 26 RDGEEAFKVEGSFFSIGD-TLTITDASGKTLVSIEQKLL------SLLPR-YEISDGGGT-VCEVRKKVTFSRDKFEIDG 96 (159)
T ss_pred CCCcEEEEEeeeEEeeCc-eEEEEecCCCChHHHHHHHh------hccce-eEEEcCCCC-EEEEEEEEEEEeeeEEEcC
Confidence 567789999999999965 89999999999999999987 67565 699999999 88888885 233
Q ss_pred --ceeEec---C---CCCcceeEEEEEecccCCCcceEEEEEecC
Q 029587 84 --WQGFKG---D---DGEEKELIFKVNRTMKTLTRTEFEVFIVDE 120 (191)
Q Consensus 84 --w~~~~~---~---~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~ 120 (191)
|+++-. . -.++.+..++|.|++ ...+..|.+.++++
T Consensus 97 ~~~eihGNi~d~efkl~dg~~~~aeVsKkw-f~~rdTY~l~vapd 140 (159)
T COG4894 97 LNWEIHGNIWDDEFKLTDGENVRAEVSKKW-FSWRDTYHLQVAPD 140 (159)
T ss_pred CCeEEecceeceEEEEecCCceehhheeee-EeccceEEEEEcCc
Confidence 444320 0 023345889999986 56688899887654
No 5
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=97.78 E-value=0.00036 Score=59.95 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=92.8
Q ss_pred eCCCeEEEcCCCCEEEEEec-ccccCcc--CccccCceEEEEcCCCCeeEEEeccCC--cc--ceeEec--CC-CCccee
Q 029587 28 TRGDIGFADSSGDVIYRVNR-TQHQSKS--NSSQRRKRVVVVDSAGNPLISVYRQDK--GL--WQGFKG--DD-GEEKEL 97 (191)
Q Consensus 28 ~~~~f~V~D~~G~~vf~V~g-~~~~~~~--~~s~~~~~~~l~D~~G~~L~ti~~k~~--~~--w~~~~~--~~-~~~~~~ 97 (191)
+.+.|.|.|.+|+.+|.+-- +.. ..| +.+.|+-...++|.-|+++++++|... .. +..-.- +. .....+
T Consensus 97 t~NRY~v~~~~g~~v~~~~E~S~~-~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~~~~ 175 (292)
T KOG0621|consen 97 TANRYVVHDMYGQPLYYAMERSNV-FARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPPMGL 175 (292)
T ss_pred cCcEEEEEcCCcChhHHHHhhchH-HHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCCCce
Confidence 35899999999999984422 210 000 113556678899999999999999862 21 111000 00 001124
Q ss_pred EEEEEecccCCCcceEEEEEecCCCCCCcceEEEEcc-------cCCceeEEE-EC-CeEEEEEEeeeee--eeEEEeec
Q 029587 98 IFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGS-------PFQKSCTIY-RG-NSIIAQTSLMYKL--QQIYVRRN 166 (191)
Q Consensus 98 ~f~vkk~~~~~~k~~~~V~~~~~~~~~~~~~~~v~G~-------~~~~~~~I~-~~-~~~VAeV~rk~~~--~~~~~~~d 166 (191)
+-+|.+.. ....++++|.=. +...-+.|+|. +-+..+.+. .+ +++|++|.|+|.. .+.+...|
T Consensus 176 lG~v~q~~-~~~~~~f~i~~~-----~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad 249 (292)
T KOG0621|consen 176 LGKVLQTW-GCVNPNFHLWDR-----DGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDAD 249 (292)
T ss_pred EEEEEEee-ccccceEEEEcc-----cceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheeccc
Confidence 55555553 456777777421 12334677766 233444444 33 7899999999974 36777788
Q ss_pred eEEEEEcCCCCcH---HHHHHhheeeeC
Q 029587 167 KFRLTIFPTSIEP---AVIVALVVIFLD 191 (191)
Q Consensus 167 ty~l~V~pg~vD~---a~i~alvvI~~D 191 (191)
+|.|.---. +|. |+++|.+ .+||
T Consensus 250 ~f~v~FPld-Ldvk~kavllga~-flID 275 (292)
T KOG0621|consen 250 TFVVHFPLD-LDVKLKALLLGST-FLID 275 (292)
T ss_pred eeeEecCCc-CCHHHHhhhhhhe-eeEE
Confidence 888876444 454 6777777 6665
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=97.58 E-value=0.00072 Score=54.13 Aligned_cols=60 Identities=20% Similarity=0.342 Sum_probs=38.8
Q ss_pred CCCcEEEEEEE-eeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCC----eeEEEecc
Q 029587 12 SPIPVDLFVSK-KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ 79 (191)
Q Consensus 12 ~~~~~~l~vkq-k~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~----~L~ti~~k 79 (191)
......|.++. +.+++++ ...++|++|++++.+..+.+ +++ .+..+.+++++ ++++|+++
T Consensus 35 ~~G~~vf~V~g~~~~s~~~-~~~l~D~~G~~L~~i~~k~~------~l~-~~w~i~~~~~~~~~~~i~tvkk~ 99 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIGK-KRTLMDASGNPLFTIRRKLF------SLR-PTWEIYRGGGSEGKKPIFTVKKK 99 (187)
T ss_dssp TTS-EEEEEE--SCTTBTT-EEEEE-TTS-EEEEEE---------------EEEEEETT---GGGEEEEEE--
T ss_pred CCCCEEEEEEEecccCCCC-EEEEECCCCCEEEEEEeeec------ccc-eEEEEEECCCCccCceEEEEEEe
Confidence 45568899999 8899965 99999999999999999877 674 45699999988 59999998
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=96.69 E-value=0.0047 Score=50.45 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccCC-------ccceeEecCCCCcceeEEEEE
Q 029587 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK-------GLWQGFKGDDGEEKELIFKVN 102 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~~-------~~w~~~~~~~~~~~~~~f~vk 102 (191)
...+|.+.+|+++-+|..... .-..++.|+|++|+++++|+.... -.++++..++ +.+.+|+
T Consensus 106 ~~~~V~~p~g~~iG~I~q~~~-------~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I~~~~~----~~vg~I~ 174 (221)
T PF03803_consen 106 QEMEVESPPGNLIGSIRQPFS-------CCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEIKDPNG----QEVGSIT 174 (221)
T ss_pred eeEEEecCCCcEEEEEEEcCc-------ccceEEEEEECCCceEEEEeCCcceeccccceeeeeecccC----cEEEEEE
Confidence 467788899999999998753 335668999999999999987631 3455555443 4789999
Q ss_pred ecc
Q 029587 103 RTM 105 (191)
Q Consensus 103 k~~ 105 (191)
|++
T Consensus 175 k~w 177 (221)
T PF03803_consen 175 KKW 177 (221)
T ss_pred Eec
Confidence 886
No 8
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=77.84 E-value=9.1 Score=27.45 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=27.1
Q ss_pred ccCceEEEEcCCCCeeEEEeccCCccceeEecCC
Q 029587 58 QRRKRVVVVDSAGNPLISVYRQDKGLWQGFKGDD 91 (191)
Q Consensus 58 ~~~~~~~l~D~~G~~L~ti~~k~~~~w~~~~~~~ 91 (191)
..++.|.|+|++|+.|..+.+.--.+|+....++
T Consensus 59 ~~gd~l~L~d~~G~~v~~f~~~~~g~~~g~~~~g 92 (99)
T PF02974_consen 59 PTGDGLVLTDADGSVVAFFYRSGDGRFEGQTPDG 92 (99)
T ss_dssp EETTEEEEE-TTS-EEEEEEEECTTEEEEEECCC
T ss_pred EcCCEEEEECCCCCEEEEEEccCCeeEEeEcCCC
Confidence 3456789999999999999998888999988765
No 9
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=65.14 E-value=11 Score=25.74 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=9.1
Q ss_pred eEEEEcCCCCeeEEEe
Q 029587 62 RVVVVDSAGNPLISVY 77 (191)
Q Consensus 62 ~~~l~D~~G~~L~ti~ 77 (191)
++.|+|++|+.+-++.
T Consensus 28 ~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTIS 43 (81)
T ss_dssp EEEEEETTS-EEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4566666666666554
No 10
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=64.62 E-value=13 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=19.6
Q ss_pred cCceEEEEcC-CCCeeEEEeccC----CccceeEecC
Q 029587 59 RRKRVVVVDS-AGNPLISVYRQD----KGLWQGFKGD 90 (191)
Q Consensus 59 ~~~~~~l~D~-~G~~L~ti~~k~----~~~w~~~~~~ 90 (191)
..++|.+.|+ +|++||+-.+.- .++..+..++
T Consensus 116 ~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~ 152 (264)
T PF04790_consen 116 QSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPE 152 (264)
T ss_pred ecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCc
Confidence 3556778887 788888776642 2444444444
No 11
>PF15529 Toxin_49: Putative toxin 49
Probab=62.56 E-value=9.6 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=19.5
Q ss_pred EEEeeceEeCCCeEEEcCCCCEEEEEecccc
Q 029587 20 VSKKYPGLTRGDIGFADSSGDVIYRVNRTQH 50 (191)
Q Consensus 20 vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~ 50 (191)
++.+-=.+ .+|++||++|.++-|+++...
T Consensus 22 ~~~~~G~v--t~Y~tY~~~G~~~kr~r~~Gk 50 (89)
T PF15529_consen 22 YRADPGRV--TSYTTYDEDGMIVKRYRGSGK 50 (89)
T ss_pred EeccCCcc--cceeEEcCCCcEeEEeeccCC
Confidence 45343333 489999999996666666543
No 12
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=59.30 E-value=20 Score=27.55 Aligned_cols=56 Identities=14% Similarity=0.276 Sum_probs=35.6
Q ss_pred eEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC----CccceeE
Q 029587 32 IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQGF 87 (191)
Q Consensus 32 f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~~ 87 (191)
+.|+|++|+++-++.-.........-.+.--+.+.|.+|+.|+.-|..- ...|..-
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~ 60 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNS 60 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCcccc
Confidence 3689999999999887654111111122234789999999888644432 2678754
No 13
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=55.21 E-value=29 Score=27.69 Aligned_cols=38 Identities=0% Similarity=0.104 Sum_probs=29.5
Q ss_pred CceeEEEECCeEEEEEEeeeeeeeEEEeeceEEEEEcCCCCcH
Q 029587 137 QKSCTIYRGNSIIAQTSLMYKLQQIYVRRNKFRLTIFPTSIEP 179 (191)
Q Consensus 137 ~~~~~I~~~~~~VAeV~rk~~~~~~~~~~dty~l~V~pg~vD~ 179 (191)
.++|.|+++|..|+||.-- --.+..+|.+.|..|.+|.
T Consensus 22 Arn~~ve~egveVgEiDIV-----Aek~GerYavEVKAG~vdi 59 (209)
T COG4998 22 ARNMPVEDEGVEVGEIDIV-----AEKGGERYAVEVKAGMVDI 59 (209)
T ss_pred eecceeecCCeEEEEEEEE-----EecCCcEEEEEEeccccch
Confidence 4688999999999999821 1146899999999885554
No 14
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=52.32 E-value=50 Score=28.57 Aligned_cols=48 Identities=13% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCeEEEcCCCCEEEEEecc-cccCccCccccCceEEEEcCCCCeeEEEecc
Q 029587 30 GDIGFADSSGDVIYRVNRT-QHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g~-~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k 79 (191)
-.|.|.|..++.+|+|+|. ..+.+-+ +. ...+.++..+|..+..|-||
T Consensus 188 ~~f~i~~~~~~~v~~v~gp~~~~~~~~-~d-~~f~~~~~d~~~~vg~I~k~ 236 (292)
T KOG0621|consen 188 PNFHLWDRDGNLVFLVEGPRCCTFACC-DD-TVFFPKTTDNGRIVGSISRK 236 (292)
T ss_pred ceEEEEcccceeEEEEEcCceeEEEee-cC-cceeEEEcCCCeEEEEEeec
Confidence 4899999999999999997 2211111 11 22346777788888888765
No 15
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=50.18 E-value=45 Score=26.23 Aligned_cols=59 Identities=22% Similarity=0.328 Sum_probs=34.4
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccCC----ccceeEecC
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDK----GLWQGFKGD 90 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~~----~~w~~~~~~ 90 (191)
=+.|+|++|+++-++.-.-. +......+.-.+.++|.+|+.|+.=|.... ..|..+-|+
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~-~~~~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQM-RAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHH-hhCCCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCC
Confidence 47899999999998832110 001112234457888999988874332221 345555554
No 16
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=50.15 E-value=29 Score=29.38 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=29.5
Q ss_pred eCCC-eEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 28 ~~~~-f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|++ |.|.+.+|+.+|+=+|.+. ..... .|.+++|.+|+.
T Consensus 98 ~G~GFF~V~~~~G~~~YTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 138 (264)
T PRK12816 98 EGEGFFKILMPDGTYAYTRDGSFK-------IDANG-QLVTSNGYRLLP 138 (264)
T ss_pred CCCcEEEEEcCCCCeEEeeCCCee-------ECCCC-CEECCCCCEecc
Confidence 3444 4677789988899888864 43444 699999999985
No 17
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=49.66 E-value=19 Score=30.54 Aligned_cols=20 Identities=35% Similarity=0.325 Sum_probs=15.0
Q ss_pred CceEEEEcCCCCeeEEEecc
Q 029587 60 RKRVVVVDSAGNPLISVYRQ 79 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~k 79 (191)
.++|.+.|.+|++||+.-+.
T Consensus 138 ~~~Fev~~~dgk~LFsad~d 157 (292)
T KOG3950|consen 138 CKRFEVNDVDGKLLFSADED 157 (292)
T ss_pred hceeEEecCCCcEEEEeccc
Confidence 45677888888888887664
No 18
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=48.32 E-value=32 Score=27.31 Aligned_cols=19 Identities=11% Similarity=0.004 Sum_probs=9.8
Q ss_pred CceEEEEcCCCCee-EEEec
Q 029587 60 RKRVVVVDSAGNPL-ISVYR 78 (191)
Q Consensus 60 ~~~~~l~D~~G~~L-~ti~~ 78 (191)
+.++.|.|.+|+.. +++..
T Consensus 112 GD~I~v~~~~g~~~~Y~V~~ 131 (174)
T TIGR03784 112 GDVIRLQTPDGQWQSYQVTA 131 (174)
T ss_pred CCEEEEEECCCeEEEEEEeE
Confidence 34455556665543 55544
No 19
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=46.30 E-value=53 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.561 Sum_probs=11.1
Q ss_pred EEEEcCCCCeeEEEecc
Q 029587 63 VVVVDSAGNPLISVYRQ 79 (191)
Q Consensus 63 ~~l~D~~G~~L~ti~~k 79 (191)
+.++|++|+.+++|..+
T Consensus 93 vsiyds~~nn~fS~ND~ 109 (182)
T COG5436 93 VSIYDSNGNNFFSINDR 109 (182)
T ss_pred EEEEcCCCCceEEeccc
Confidence 46667777777666654
No 20
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=46.10 E-value=35 Score=25.19 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.6
Q ss_pred CceEEEEcCCCCeeEEEe
Q 029587 60 RKRVVVVDSAGNPLISVY 77 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~ 77 (191)
+.++.+.|..+.--+++.
T Consensus 68 Gd~v~v~~~~~~~~Y~V~ 85 (126)
T cd06166 68 GDEIKVTTKNGTYKYKIT 85 (126)
T ss_pred CCEEEEEECCEEEEEEEE
Confidence 344555555444444443
No 21
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=45.54 E-value=34 Score=25.35 Aligned_cols=19 Identities=11% Similarity=0.037 Sum_probs=9.5
Q ss_pred CceEEEEcCCCCeeEEEec
Q 029587 60 RKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~ 78 (191)
+.++.+.+..+.-.+++.+
T Consensus 65 Gd~i~v~~~~~~~~Y~V~~ 83 (127)
T cd05828 65 GDIITLQTLGGTYTYRVTS 83 (127)
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 3455566654444445544
No 22
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=45.41 E-value=48 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.235 Sum_probs=28.9
Q ss_pred eCCC-eEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 28 ~~~~-f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|++ |.|.+.+|+..|+=+|.+. ..... .|.+++|.+|+.
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 138 (262)
T PRK12691 98 QGRGYFQIQLPDGETAYTRAGAFN-------RSADG-QIVTSDGYPVQP 138 (262)
T ss_pred cCCcEEEEEcCCCCEEEeeCCCee-------ECCCC-CEECCCCCEeEe
Confidence 3434 4666788988899888864 43444 699999999985
No 23
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=43.56 E-value=36 Score=28.54 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=28.6
Q ss_pred eCCC-eEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 28 TRGD-IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 28 ~~~~-f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|++ |.|.+++|+..|+=+|.+. ..... .|.+++|.+|+.
T Consensus 96 ~G~GfF~V~~~~g~~~yTR~G~F~-------~d~~G-~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 96 EGEGFFQVLMPDGTTAYTRDGAFK-------INAEG-QLVTSNGYPLQP 136 (259)
T ss_pred cCCcEEEEEcCCCCeEEeeCCceE-------ECCCC-CEECCCCCEecC
Confidence 3444 4666788888899888754 43444 688999999884
No 24
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=43.15 E-value=39 Score=28.43 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=29.0
Q ss_pred eCCCe-EEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 28 TRGDI-GFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 28 ~~~~f-~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|++| .|.+++|+..|+=+|.+. ..... .|.+++|.+|+.
T Consensus 98 ~G~GfF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~Vl~ 138 (260)
T PRK12694 98 NGQGFFQVLMPDGTTAYTRDGSFQ-------TNAQG-QLVTSSGYPLQP 138 (260)
T ss_pred cCCcEEEEEcCCCCeEEeeCCCce-------ECCCC-CEECCCCCEecc
Confidence 44444 677788888899888864 43444 688999999885
No 25
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=42.65 E-value=75 Score=21.91 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=7.9
Q ss_pred EEEcCCCCeeEEEe
Q 029587 64 VVVDSAGNPLISVY 77 (191)
Q Consensus 64 ~l~D~~G~~L~ti~ 77 (191)
...|.+|+-++.|+
T Consensus 56 ~~Td~~G~a~~~l~ 69 (92)
T smart00634 56 ATTDANGIATVTLT 69 (92)
T ss_pred eeeCCCCEEEEEEE
Confidence 35555666555555
No 26
>PHA00458 single-stranded DNA-binding protein
Probab=42.30 E-value=17 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=28.8
Q ss_pred EeCCCeEEEcCCCCEEEEEecccc-cCccCccccCceEEEEcCCCCeeE
Q 029587 27 LTRGDIGFADSSGDVIYRVNRTQH-QSKSNSSQRRKRVVVVDSAGNPLI 74 (191)
Q Consensus 27 ~~~~~f~V~D~~G~~vf~V~g~~~-~~~~~~s~~~~~~~l~D~~G~~L~ 74 (191)
..++.--..+++|++.|+.+.+.. +.+.-...+...+.|.|+.|++|-
T Consensus 91 ~egdmpf~eNedG~v~F~FK~~aS~~dkktGe~~~i~l~v~DskGK~l~ 139 (233)
T PHA00458 91 YEGDMPFFDNGDGTVTFKFKCYASYKDKKTGENKPIVLRVVDSKGKRIE 139 (233)
T ss_pred cccCCCcccCCCceEEEEEEeeeecccccCCcccccceeEEcCCCcCcC
Confidence 334333345689999999999743 000000112234789999998875
No 27
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=41.84 E-value=68 Score=24.92 Aligned_cols=22 Identities=9% Similarity=0.231 Sum_probs=17.7
Q ss_pred EeCCCeEEEcCCCCEEEEEecc
Q 029587 27 LTRGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 27 ~~~~~f~V~D~~G~~vf~V~g~ 48 (191)
|.+.-|.|+|++|+++..++-.
T Consensus 2 ~~~E~~~v~d~~~~~~~~~~r~ 23 (180)
T cd03676 2 WRNELYAVYGPFGEPLFEIERA 23 (180)
T ss_pred CcCcceeeECCCCCEeEEEEec
Confidence 4566789999999999877654
No 28
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=38.75 E-value=53 Score=18.94 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.4
Q ss_pred EcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 35 ADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 35 ~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
||++|+++=.++.... ..+ .=+|+.|+++-.
T Consensus 1 YD~~G~l~~~~d~~G~---------~~~-y~YD~~g~l~~~ 31 (38)
T PF05593_consen 1 YDANGRLTSVTDPDGR---------TTR-YTYDAAGRLTSV 31 (38)
T ss_pred CCCCCCEEEEEcCCCC---------EEE-EEECCCCCEEEE
Confidence 4777888777765432 223 667888776543
No 29
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=38.74 E-value=85 Score=26.41 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=38.5
Q ss_pred CCeEEEcCCCCEEEEEecccccC------ccCccccCceEEEEcCCCCeeEEEeccCC----ccceeEec
Q 029587 30 GDIGFADSSGDVIYRVNRTQHQS------KSNSSQRRKRVVVVDSAGNPLISVYRQDK----GLWQGFKG 89 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g~~~~~------~~~~s~~~~~~~l~D~~G~~L~ti~~k~~----~~w~~~~~ 89 (191)
+...|+|++++++-+..-+.. + ....--|.-.+.|+|.+|+.|++-|..-. ..|..-.+
T Consensus 23 e~v~lvDe~d~~~G~~~r~~~-H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~ 91 (247)
T PLN02552 23 DECILVDENDNVVGHDSKYNC-HLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCC 91 (247)
T ss_pred CeEEEEcCCCCEEeeeEHhhh-hccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccC
Confidence 588999999999988864321 0 00111223357899999998888886543 46755543
No 30
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=38.51 E-value=90 Score=20.71 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=26.3
Q ss_pred CeEEEcCCCCEEEE-EecccccCccCccccCceEEEEcCCCCeeEEEe
Q 029587 31 DIGFADSSGDVIYR-VNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVY 77 (191)
Q Consensus 31 ~f~V~D~~G~~vf~-V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~ 77 (191)
.=.|.|.+|+++-+ |+|....+- ....-..- .+.|.+|+.|-...
T Consensus 12 ~G~V~d~~G~~vG~vveGd~k~L~-G~~vd~~G-~I~d~~G~viGkae 57 (64)
T PF12396_consen 12 DGNVVDDDGNVVGRVVEGDPKKLV-GKKVDEDG-DILDKDGNVIGKAE 57 (64)
T ss_pred CCeEECCCCCEEEEEecCCHHHhc-CCcCCCCC-CEECCCCCEEEEEE
Confidence 45688999999999 555421000 00111112 47888888887654
No 31
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=38.10 E-value=59 Score=27.25 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.8
Q ss_pred eCCCe-EEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 28 TRGDI-GFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 28 ~~~~f-~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|++| .|.+++|+..|+=+|.+. ..... .|.+++|.+|+.
T Consensus 98 ~G~GfF~v~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 138 (261)
T PRK12693 98 EGQGFFQVQLPDGTIAYTRDGSFK-------LDQDG-QLVTSGGYPLQP 138 (261)
T ss_pred CCCcEEEEEcCCCCeEEeeCCCee-------ECCCC-CEECCCCCEEee
Confidence 45555 566788888899888754 43444 688999999985
No 32
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=37.62 E-value=2.2e+02 Score=23.83 Aligned_cols=62 Identities=5% Similarity=0.124 Sum_probs=36.4
Q ss_pred ccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCC--CCCCcceEEEEcccCCceeEEEECC
Q 029587 82 GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN--SEDSASHFTIKGSPFQKSCTIYRGN 146 (191)
Q Consensus 82 ~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~--~~~~~~~~~v~G~~~~~~~~I~~~~ 146 (191)
+.+..|..+.. ...+...||.. ..-.+.|-|++.... ...+..-=+|+.||++.+|+||+.|
T Consensus 25 p~y~l~l~~~~--~kfLLaArK~~-~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT~F~iyD~g 88 (246)
T PF01167_consen 25 PGYYLYLEGEN--GKFLLAARKRK-RSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGTEFTIYDNG 88 (246)
T ss_dssp -EEEEEEESTT--SEEEEEEEEEC-SSSSEEEEEESSHHHHCTT---ESEEEEE-TTSSEEEEEESS
T ss_pred cEeEeccccCC--CcEEEeeeecc-cCCCcceEEecCCCccccCCCceeeeeccccceeEEEEECCC
Confidence 44555554322 24677777763 344678888875421 1112223467899999999999985
No 33
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=36.99 E-value=69 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=25.1
Q ss_pred CCCCEEEEEecccccCccC-ccccCceEEEEcCCCCeeEEE
Q 029587 37 SSGDVIYRVNRTQHQSKSN-SSQRRKRVVVVDSAGNPLISV 76 (191)
Q Consensus 37 ~~G~~vf~V~g~~~~~~~~-~s~~~~~~~l~D~~G~~L~ti 76 (191)
++|..+++|+|...-.... .....=++.|.|.+|++|.+-
T Consensus 64 ~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r 104 (149)
T PF11906_consen 64 PDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARR 104 (149)
T ss_pred cCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEE
Confidence 3788899998874300000 011122789999999999643
No 34
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=36.63 E-value=48 Score=27.44 Aligned_cols=42 Identities=17% Similarity=0.214 Sum_probs=24.4
Q ss_pred CCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEec
Q 029587 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~ 78 (191)
++.+.+.+ .+..-++++=..- ...-++.|+|++|+.+-++.-
T Consensus 104 ~~~~~~~~-~~~~~~~~~l~~~-------a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 104 GDTVLVGT-GGTTPFGVELPSA-------ADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred cceEEecC-CCceEEEEEcCCC-------CcEEEEEEEcCCCCEEEEEec
Confidence 44444433 3455666652211 123468899999999987754
No 35
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=35.10 E-value=66 Score=26.55 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.7
Q ss_pred ceEEEEcCCCCeeEEEec
Q 029587 61 KRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~~ 78 (191)
-.+.|+|++|+.+-++.-
T Consensus 124 v~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 124 VNFEITDANGAFVKQISV 141 (221)
T ss_pred EEEEEEcCCCCEEEEEec
Confidence 468999999999988754
No 36
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.94 E-value=28 Score=24.08 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=10.7
Q ss_pred CeEEEcCCCCEEEEEec
Q 029587 31 DIGFADSSGDVIYRVNR 47 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g 47 (191)
+|.|+|++|+.||+=..
T Consensus 27 D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp EEEEE-TT--EEEETTT
T ss_pred EEEEECCCCCEEEEecC
Confidence 67888999999988543
No 37
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=34.33 E-value=58 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=14.0
Q ss_pred CCEEEEEecccccCccCccccCceEEEEcCCCCe
Q 029587 39 GDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72 (191)
Q Consensus 39 G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~ 72 (191)
++..|.-.|..- ..+..++|.|.+|..
T Consensus 81 ~~~~f~~~G~w~-------~~~~~i~L~~~~g~~ 107 (234)
T PRK10523 81 EPSSFASYGTWA-------RTADKLVLTDSKGEK 107 (234)
T ss_pred CCCceEeeEEEE-------ecCCEEEEecCCCCE
Confidence 345566666532 233455566666654
No 38
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=34.26 E-value=58 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.1
Q ss_pred CceEEEEcCCCCeeEEEec
Q 029587 60 RKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~ 78 (191)
.-++.|+|++|+.+-++.-
T Consensus 130 ~v~v~I~D~~G~vV~t~~l 148 (230)
T PRK12633 130 KVTVKVLDPSGAVVRTMEL 148 (230)
T ss_pred EEEEEEEeCCCCEEEEEec
Confidence 3468999999999988753
No 39
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=33.32 E-value=20 Score=23.12 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=8.6
Q ss_pred CCeEEEcCCCCEEEEEec
Q 029587 30 GDIGFADSSGDVIYRVNR 47 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g 47 (191)
-.|..+||||++| ||.-
T Consensus 10 s~F~FYDen~~lV-rv~v 26 (54)
T PF12142_consen 10 SSFLFYDENGQLV-RVKV 26 (54)
T ss_dssp -EEEEE-TTS-EE-EEEG
T ss_pred CeeEEECCCCCEE-EEEh
Confidence 3577777777764 4443
No 40
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=32.38 E-value=1.3e+02 Score=21.19 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=29.9
Q ss_pred EEEEeeceEeCCC--eEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEecc
Q 029587 19 FVSKKYPGLTRGD--IGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQ 79 (191)
Q Consensus 19 ~vkqk~~s~~~~~--f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k 79 (191)
..++|.....+++ --=+|..|.-+|.-|.. ++ +|.++|..|+.|-.+-..
T Consensus 18 ~~k~ktp~~gg~~~r~rw~~~kG~kiYewDsq----------HG-~lEvy~~~GkHLGe~Dp~ 69 (85)
T PF09000_consen 18 KAKPKTPVQGGGGKRKRWKDKKGRKIYEWDSQ----------HG-ELEVYNKRGKHLGEFDPK 69 (85)
T ss_dssp EE---SB-SSSSSB--EEEETTTTEEEEEETT----------TT-EEEEEETT-BEEEEE-TT
T ss_pred hccccCccccCCccccceEcCCCCEEEEEcCC----------CC-eEEEEcCCCcCcccccCC
Confidence 3555555544322 22358899999998875 23 589999999999887644
No 41
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=30.63 E-value=12 Score=25.98 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=16.8
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeE
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ 74 (191)
=|.|+|.+|..+..-....+ .| ..-.-+.|++|++++
T Consensus 58 Y~fi~d~~g~~l~hp~~p~~-~G------~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 58 YFFIYDMDGVVLAHPSNPEL-EG------KNLSDLKDPNGKYLI 94 (95)
T ss_dssp --EEE-TTSBEEEESS-GGG-TT-------B-TT-B-TT--BHH
T ss_pred eEEEEeCCCeEEEcCCCccc-CC------cccccCCCCCCCEEe
Confidence 47888999988776443322 11 111247899998874
No 42
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=29.59 E-value=78 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=27.4
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
=|.|.+++|+.+|+=+|.+. ..... .|.+++|.+|+.
T Consensus 98 fF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl~ 134 (260)
T PRK12817 98 FFRVIMADGTYAYTRAGNFN-------IDSNG-MLVDDNGNRLEI 134 (260)
T ss_pred EEEEEcCCCCeEEEeCCcee-------ECCCC-CEEcCCCCEEEe
Confidence 45676788988899888864 43444 688899999885
No 43
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=29.40 E-value=89 Score=26.54 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred EEEcCCCCEEEEEecccccCccCccccCceEEE--EcCCCCee
Q 029587 33 GFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVV--VDSAGNPL 73 (191)
Q Consensus 33 ~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l--~D~~G~~L 73 (191)
.|+|++|++|.+++.... ....+.|.. .|.+|+++
T Consensus 146 ~I~D~~G~~V~t~~lg~~------~aG~~~f~WDG~d~~G~~~ 182 (259)
T PRK12812 146 EIYDSNNKLVEKIDFKEI------SQGLFTMEWDGRDNDGVYA 182 (259)
T ss_pred EEEeCCCCEEEEEecCCC------CCcceeEEECCCCCCCCcC
No 44
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=29.38 E-value=85 Score=23.24 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=25.5
Q ss_pred eeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEec
Q 029587 23 KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 23 k~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~ 78 (191)
+.+.++.++|.+++.+ .+.-|..... | ..++|++|..+|.+-.
T Consensus 63 QPi~iN~gg~~~y~gq--~a~~vt~~~h------S-----MAv~d~~g~q~Fy~pn 105 (114)
T PF09008_consen 63 QPIIINKGGFPVYNGQ--IAKFVTVPGH------S-----MAVYDANGQQQFYFPN 105 (114)
T ss_dssp SSEEE-TTS-EEETTE--E--EEESSSE------E-----EEEE-TTS-EEEEESE
T ss_pred CCEEEccCCceEEccc--eeEEEEccCc------e-----EEEEeCCCcEEEeecc
Confidence 3556666799999654 5555555433 3 4899999999998864
No 45
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.28 E-value=91 Score=23.32 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=10.3
Q ss_pred CceEEEEcCCCCeeEEEec
Q 029587 60 RKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~ 78 (191)
+.++.+.|..|.--+++-.
T Consensus 69 Gd~i~v~~~~~~~~Y~V~~ 87 (137)
T cd05830 69 GDKIVVETADGWYTYVVRS 87 (137)
T ss_pred CCEEEEEECCeEEEEEEeE
Confidence 3456666665554555544
No 46
>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.
Probab=29.14 E-value=84 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=19.7
Q ss_pred EEEEEEeeceEeCCCeEEEcCCCCEEEEEecc
Q 029587 17 DLFVSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 17 ~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~ 48 (191)
+=.|-+++.|++= +|+|.|++|+.-|.=+..
T Consensus 30 kG~IIe~l~S~~Y-DY~V~~~~GdI~~fKE~E 60 (71)
T PF09629_consen 30 KGKIIEKLHSATY-DYAVSDETGDITRFKEHE 60 (71)
T ss_dssp EEEEEEE---SS--SEEEEETTS-EEEE-GGG
T ss_pred ccchhhhhhhhee-eeeeecccCceeeeeecc
Confidence 3456678888876 999999999998876554
No 47
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=28.45 E-value=50 Score=19.30 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=7.3
Q ss_pred cCCCCEEEEEe
Q 029587 36 DSSGDVIYRVN 46 (191)
Q Consensus 36 D~~G~~vf~V~ 46 (191)
++|||.|+|.|
T Consensus 27 NeNGntV~RCd 37 (37)
T PF06357_consen 27 NENGNTVKRCD 37 (37)
T ss_dssp -SSS-EEEEE-
T ss_pred ccCCceeeccC
Confidence 78999999875
No 48
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=28.30 E-value=1.5e+02 Score=23.53 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCe
Q 029587 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNP 72 (191)
Q Consensus 12 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~ 72 (191)
+..|+.+.-+-.+.-| +-.|||++||-+|....... ..++-.+++-++-+..
T Consensus 76 segpvri~a~~nvpyW---Svsiyds~~nn~fS~ND~ta------~~gkLDlVvatPiqmi 127 (182)
T COG5436 76 SEGPVRIEAKGNVPYW---SVSIYDSNGNNFFSINDRTA------KGGKLDLVVATPIQMI 127 (182)
T ss_pred cCCcEEEEecCCCceE---EEEEEcCCCCceEEeccccc------cCCccceEEecchhhe
Confidence 3556666666665555 35688888888888877644 2223344555555443
No 49
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=27.89 E-value=75 Score=24.34 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=31.7
Q ss_pred eEEEcCCCCEEEEEecccccCccCcc-ccCceEEEEcCCCCeeEEEeccC----CccceeE
Q 029587 32 IGFADSSGDVIYRVNRTQHQSKSNSS-QRRKRVVVVDSAGNPLISVYRQD----KGLWQGF 87 (191)
Q Consensus 32 f~V~D~~G~~vf~V~g~~~~~~~~~s-~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~~ 87 (191)
..|+|++|+++-+..-... +..... .+.--+.+.|.+|+.|+.-|..- ...|..-
T Consensus 4 ~~~~d~~~~~~g~~~r~~~-~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~ 63 (165)
T cd02885 4 VILVDEDDNPIGTAEKLEA-HLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNT 63 (165)
T ss_pred EEEECCCCCCccccCHHHH-hhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCccccc
Confidence 4689999999987665532 100001 01113567999998887644332 2467654
No 50
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=27.68 E-value=56 Score=23.03 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=24.9
Q ss_pred ccccCCCCCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEeccc
Q 029587 5 GPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQ 49 (191)
Q Consensus 5 ~~~~c~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~ 49 (191)
+|+|| -+.+-...-...+..++|.|-|-+.+.=..++|..
T Consensus 7 Sd~y~-----VV~~~~~~~~~~l~~gGyEIVDK~~~rEifi~G~~ 46 (85)
T PF12091_consen 7 SDNYC-----VVEFPPDAGHPALARGGYEIVDKNARREIFIDGSW 46 (85)
T ss_pred CCceE-----EEEecCCCCccchhcCCcEEeecCCCceEEeCcHH
Confidence 57788 34444333334455568888887776666677763
No 51
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=27.38 E-value=81 Score=20.80 Aligned_cols=17 Identities=47% Similarity=0.419 Sum_probs=14.8
Q ss_pred ceEEEEcCCCCeeEEEe
Q 029587 61 KRVVVVDSAGNPLISVY 77 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~ 77 (191)
=++.++|.+|+.|.+++
T Consensus 46 WrV~V~~~~G~~l~~~~ 62 (66)
T PF11141_consen 46 WRVEVVDEDGQVLGSLR 62 (66)
T ss_pred EEEEEEcCCCCEEEEEE
Confidence 37899999999998876
No 52
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=27.30 E-value=1e+02 Score=25.58 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=13.4
Q ss_pred ceEEEEcCCCCeeEEEec
Q 029587 61 KRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~~ 78 (191)
-.+.|+|++|+.+-++.-
T Consensus 126 v~v~I~D~~G~vV~t~~~ 143 (223)
T PRK12813 126 AELVVRDAAGAEVARETV 143 (223)
T ss_pred EEEEEEcCCCCEEEEEee
Confidence 367888888888877643
No 53
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=27.29 E-value=75 Score=26.61 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=26.4
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
=|.|.+.+|+..|+=+|.+. ..... .|.+++|.+|+.
T Consensus 87 FF~V~~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vlg 123 (246)
T PRK12640 87 WLAVQAPDGSEAYTRNGSLQ-------VDANG-QLRTANGLPVLG 123 (246)
T ss_pred EEEEEcCCCCEEEEeCCCee-------ECCCC-CEEcCCCCCccC
Confidence 46666788888898888754 43444 588888888773
No 54
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=26.57 E-value=99 Score=21.39 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=3.8
Q ss_pred EEEEcCCCCee
Q 029587 63 VVVVDSAGNPL 73 (191)
Q Consensus 63 ~~l~D~~G~~L 73 (191)
+.++|.+|+|+
T Consensus 73 L~~Ld~~G~~i 83 (87)
T PF04170_consen 73 LEMLDQDGNPI 83 (87)
T ss_dssp EEEE-TTS-B-
T ss_pred EEEECCCCCcC
Confidence 34444444443
No 55
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=26.56 E-value=92 Score=26.14 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=25.5
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
=|.|.+++|+..|+=+|.+. ..... .|.+++|.+|+-
T Consensus 102 FF~V~~~~G~~~YTR~G~F~-------~d~~G-~Lvt~~G~~vlg 138 (256)
T PRK12818 102 FFTVERNAGNNYYTRDGHFH-------VDTQG-YLVNDSGYYVLG 138 (256)
T ss_pred eEEEEcCCCCeEEeeCCCee-------ECCCC-CEEcCCCCEEec
Confidence 35666778887788888754 33333 577888888873
No 56
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=25.98 E-value=80 Score=25.14 Aligned_cols=29 Identities=14% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccc
Q 029587 16 VDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQH 50 (191)
Q Consensus 16 ~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~ 50 (191)
...+|.|- + |++|||+ .+|| .||++|+..
T Consensus 24 ~~~~~~q~---l-gg~~t~~-~~g~-~~r~~~~~~ 52 (174)
T TIGR03406 24 TEVTITQA---L-GGNFTVV-VEGN-MARIDGKDA 52 (174)
T ss_pred CEEEEEEc---c-CCeEEEE-EcCe-EEEecCcCh
Confidence 45567774 3 6699994 4577 899999854
No 57
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=25.24 E-value=64 Score=20.32 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=11.8
Q ss_pred CeEEEcCCCCEEEEEec
Q 029587 31 DIGFADSSGDVIYRVNR 47 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g 47 (191)
=|.=.|++|+++|.=.-
T Consensus 15 vYk~~D~~G~v~ysd~P 31 (60)
T PF13511_consen 15 VYKWVDENGVVHYSDTP 31 (60)
T ss_pred EEEEECCCCCEEECccC
Confidence 34555899999986543
No 58
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=24.54 E-value=38 Score=20.36 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=16.9
Q ss_pred ccCceEEEEcCCCCeeEEEeccCC
Q 029587 58 QRRKRVVVVDSAGNPLISVYRQDK 81 (191)
Q Consensus 58 ~~~~~~~l~D~~G~~L~ti~~k~~ 81 (191)
+++++..--..+++||+.|++|..
T Consensus 14 irGHR~s~C~H~dRpL~~i~kkGR 37 (39)
T smart00412 14 IRGHRSSTCNHNDRPLIPVRPRGR 37 (39)
T ss_pred HCcCccCCcccCCccceeecCCCC
Confidence 456665555667888888888754
No 59
>PF08829 AlphaC_N: Alpha C protein N terminal; InterPro: IPR014933 The alpha C protein (ACP) is found in Streptococcus and acts as an invasin which plays a role in the internalisation and translocation of the organism across human epithelial surfaces. Group B Streptococcus is the leading cause of diseases including bacterial pneumonia, sepsis and meningitis. The N-terminal of ACP is associated with virulence and forms a beta sandwich and a three helix bundle [, , ]. ; PDB: 1YWM_A 2O0I_1.
Probab=24.32 E-value=34 Score=27.34 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=21.2
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCC
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSA 69 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~ 69 (191)
.|+|.|++|++.+.-||..- .+.-.++++|+.
T Consensus 92 tY~ild~~G~P~~k~DGQvd-------Ivsvnlt~Ydst 123 (194)
T PF08829_consen 92 TYNILDEDGNPHVKSDGQVD-------IVSVNLTFYDST 123 (194)
T ss_dssp EEEEEETTSSB-B-TTSSB--------EEEEEEEEE--H
T ss_pred EEEeecCCCCcccCCCCcEE-------EEEEEEEEeCcH
Confidence 47888999999999999854 445567888864
No 60
>PF09475 Dot_icm_IcmQ: Dot/Icm secretion system protein (dot_icm_IcmQ); InterPro: IPR013365 Proteins in this entry are the IcmQ component of Dot/Icm secretion systems, as found in the obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the literature now seems to favor calling this the Dot/Icm system. This protein was shown to be essential for translocation ().; PDB: 3FXE_A 3FXD_C.
Probab=24.12 E-value=26 Score=27.98 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=0.0
Q ss_pred cccCCCCCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC
Q 029587 6 PIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (191)
Q Consensus 6 ~~~c~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~ 80 (191)
|.|. ....+.-.||.|--..+. .| ++..|+.... .+..+.+ ..+|--|+||+|++.|-
T Consensus 96 PIY~--nE~dvk~~IksKenk~NE-AY--------VaiyInq~dI-----l~~~~dk-~~~Dk~GkpLltLkdra 153 (179)
T PF09475_consen 96 PIYA--NEEDVKAAIKSKENKLNE-AY--------VAIYINQSDI-----LSLSPDK-IPTDKLGKPLLTLKDRA 153 (179)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCcC--CHHHHHHHHHhhhcccce-eE--------EEEEEchHhc-----ccCCccc-ccccccCCcccccchhh
Confidence 5564 445566667777555542 33 4444555432 0455666 89999999999999985
No 61
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=23.70 E-value=2.1e+02 Score=22.24 Aligned_cols=14 Identities=43% Similarity=0.458 Sum_probs=6.8
Q ss_pred EEcCCCCeeEEEec
Q 029587 65 VVDSAGNPLISVYR 78 (191)
Q Consensus 65 l~D~~G~~L~ti~~ 78 (191)
+.|.+|+.|.+|..
T Consensus 110 V~d~~g~~lG~V~~ 123 (172)
T PRK00122 110 VVDEDGEELGKVTD 123 (172)
T ss_pred EEeCCCcEEEEEEE
Confidence 34445555555543
No 62
>PF15072 DUF4539: Domain of unknown function (DUF4539)
Probab=23.52 E-value=2.6e+02 Score=19.52 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCeeEEEeccCCccc
Q 029587 60 RKRVVVVDSAGNPLISVYRQDKGLW 84 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~k~~~~w 84 (191)
+-.+.|.|+.|+--.+|+++....+
T Consensus 20 D~~v~l~DpTG~i~~tiH~~v~~~y 44 (86)
T PF15072_consen 20 DAFVVLKDPTGEIRGTIHRKVLEEY 44 (86)
T ss_pred CeEEEEECCCCcEEEEEeHHHHhhc
Confidence 5578999999999999999986653
No 63
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=23.41 E-value=1.4e+02 Score=25.07 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=25.6
Q ss_pred CCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeE
Q 029587 30 GDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ 74 (191)
++|-+...+|+..|+=+|.+. ..... .|.+++|.+|+
T Consensus 99 ~gFf~v~~~G~~~yTR~G~F~-------~d~~G-~Lvt~~G~~vl 135 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGSFT-------LNSDR-YLQTASGAFVM 135 (257)
T ss_pred CEEEEEcCCCCeeEeeCCCee-------ECCCC-CEEcCCCCEEe
Confidence 456666778887888888754 33333 57788888777
No 64
>TIGR03066 Gem_osc_para_1 Gemmata obscuriglobus paralogous family TIGR03066. This model represents an uncharacterized paralogous family in Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. This family shows sequence similarity to TIGR03067, which is also found in Gemmata obscuriglobus as well as in a few other species.
Probab=23.37 E-value=2.7e+02 Score=20.55 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=12.7
Q ss_pred cCceEEEEcCCCCeeEEEe
Q 029587 59 RRKRVVVVDSAGNPLISVY 77 (191)
Q Consensus 59 ~~~~~~l~D~~G~~L~ti~ 77 (191)
...++++.|++|+++.-.|
T Consensus 91 ~~~~Lvl~d~dg~~~~~~r 109 (111)
T TIGR03066 91 TDDELVGKDPDGKKDTLKR 109 (111)
T ss_pred cCCeEEEEcCCCCEeEEEE
Confidence 3556777777777776554
No 65
>COG4703 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.30 E-value=86 Score=21.30 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCceeEEEECCeEEEEEEeeeeeeeEEEeeceEEEEEc
Q 029587 136 FQKSCTIYRGNSIIAQTSLMYKLQQIYVRRNKFRLTIF 173 (191)
Q Consensus 136 ~~~~~~I~~~~~~VAeV~rk~~~~~~~~~~dty~l~V~ 173 (191)
..+.+....+|.+|++|+ ..--..+|+|++.
T Consensus 21 ~k~~rnFEr~G~vv~eV~-------ys~~~e~F~lr~~ 51 (74)
T COG4703 21 EKRQRNFERNGEVVCEVK-------YSEDNETFELRDV 51 (74)
T ss_pred chhhhhhhcCCEEEEEEE-------ecCCCceEEEEEc
Confidence 445555667789999999 3445668888876
No 66
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=22.95 E-value=1.4e+02 Score=21.89 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=9.3
Q ss_pred CceEEEEcCCCCeeEEEec
Q 029587 60 RKRVVVVDSAGNPLISVYR 78 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~ 78 (191)
+.++.|.+..+.--+++..
T Consensus 67 Gd~I~l~~~~~~~~Y~V~~ 85 (127)
T cd06165 67 GDKIYLTDKDNVYEYKVTS 85 (127)
T ss_pred CCEEEEEECCEEEEEEEee
Confidence 3455555555544444443
No 67
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=22.82 E-value=99 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=6.3
Q ss_pred eEEEcCCCCEEE
Q 029587 32 IGFADSSGDVIY 43 (191)
Q Consensus 32 f~V~D~~G~~vf 43 (191)
|..+|++|+..|
T Consensus 71 FvLT~~dG~r~y 82 (89)
T smart00800 71 FVLTDIDGSRRY 82 (89)
T ss_pred EEEECCCCCEEE
Confidence 555555555443
No 68
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=22.45 E-value=1.9e+02 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=9.2
Q ss_pred EEEcCCCCeeEEEec
Q 029587 64 VVVDSAGNPLISVYR 78 (191)
Q Consensus 64 ~l~D~~G~~L~ti~~ 78 (191)
.+.|.+|+.|.+|..
T Consensus 104 ~V~d~~~~~lG~V~~ 118 (165)
T TIGR02273 104 EVVTEEGEELGKVVE 118 (165)
T ss_pred EEEcCCCcEEEEEEE
Confidence 356666666666654
No 69
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=22.17 E-value=2.9e+02 Score=19.49 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.7
Q ss_pred ceEeCCCeEEEcCCCCEEEEEecc
Q 029587 25 PGLTRGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 25 ~s~~~~~f~V~D~~G~~vf~V~g~ 48 (191)
|...+++...+|.+|+.+-+....
T Consensus 57 W~~~gd~l~L~d~~G~~v~~f~~~ 80 (99)
T PF02974_consen 57 WRPTGDGLVLTDADGSVVAFFYRS 80 (99)
T ss_dssp EEEETTEEEEE-TTS-EEEEEEEE
T ss_pred eeEcCCEEEEECCCCCEEEEEEcc
Confidence 677889999999999999887665
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.82 E-value=83 Score=21.82 Aligned_cols=19 Identities=32% Similarity=0.620 Sum_probs=15.1
Q ss_pred CeEEEcCCCCEEEEEeccc
Q 029587 31 DIGFADSSGDVIYRVNRTQ 49 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~ 49 (191)
.+.+.|.+|+.++++.|+.
T Consensus 85 t~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp EEEECTTTSCEEEEEESS-
T ss_pred EEEEEcCCCCEEEEecCCC
Confidence 3567789999999999974
No 71
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=21.71 E-value=2.4e+02 Score=20.03 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=8.3
Q ss_pred CCeEEEcCCCCEEEE
Q 029587 30 GDIGFADSSGDVIYR 44 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~ 44 (191)
+.+.++|.+|.++..
T Consensus 64 GnLvl~~~~g~~vW~ 78 (114)
T smart00108 64 GNLVLYDGDGRVVWS 78 (114)
T ss_pred CCEEEEeCCCCEEEE
Confidence 455566665555544
No 72
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=21.67 E-value=1.7e+02 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred CeEEEc-CCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccCCccc
Q 029587 31 DIGFAD-SSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQDKGLW 84 (191)
Q Consensus 31 ~f~V~D-~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~~~~w 84 (191)
+|.|+| ++|+++.+..... +++|..-+-+..|...+...+
T Consensus 97 ~f~i~d~~~G~~l~~a~s~W--------------vliD~~trr~~ri~~~~~~~~ 137 (261)
T PF01643_consen 97 DFEIYDAEDGELLARATSIW--------------VLIDLETRRPVRIPEEIIEEY 137 (261)
T ss_dssp EEEEE--TTS-EEEEEEEEE--------------EEEETTT-SEE---GGCTCCG
T ss_pred EEEEEECCCCcEEEEEEEEE--------------EEEEhhhCCcccCCHHHHhhh
Confidence 799999 9999999888762 567766555566655444333
No 73
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.19 E-value=1.8e+02 Score=25.25 Aligned_cols=17 Identities=0% Similarity=0.151 Sum_probs=13.1
Q ss_pred ceEEEEcCCCCeeEEEe
Q 029587 61 KRVVVVDSAGNPLISVY 77 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~ 77 (191)
-++.|+|++|+.+-++.
T Consensus 168 v~I~I~Da~G~vVrTi~ 184 (295)
T PRK05842 168 PAIQILNENNELVKTIP 184 (295)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 45788888888887774
No 74
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=20.93 E-value=1.1e+02 Score=25.05 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=32.1
Q ss_pred eeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeE
Q 029587 23 KYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI 74 (191)
Q Consensus 23 k~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ 74 (191)
.....++|++.+++..+..+.+-.|..+. .+....+++.|.+|+++-
T Consensus 22 Gl~~g~~GNiS~R~~~~~~lITPsg~~~~-----~l~~~Div~vd~~G~~i~ 68 (217)
T PRK05874 22 GLVEGTAGNISARRSDGNVVITPSSVDYA-----EMLLHDLVLVDAGGAVLH 68 (217)
T ss_pred CCCCCCCCeEEEEcCCCCEEEeCCCCChh-----hCCHHHEEEEcCCCCEec
Confidence 34455678999998777655554554331 355678999999998763
No 75
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=20.80 E-value=3e+02 Score=19.03 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CCCEEEEEecccccCccCccccCceEEEEcCCCCeeE-EEeccCCc
Q 029587 38 SGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLI-SVYRQDKG 82 (191)
Q Consensus 38 ~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~-ti~~k~~~ 82 (191)
+|+.+-+|.... .+..+.++.++|...+ .|.-|+..
T Consensus 4 e~q~~g~V~~~l---------G~~~~~V~~~dG~~~la~ipgK~Rk 40 (83)
T smart00652 4 DGQEIAQVVKML---------GNGRLEVMCADGKERLARIPGKMRK 40 (83)
T ss_pred CCcEEEEEEEEc---------CCCEEEEEECCCCEEEEEEchhhcc
Confidence 566666666642 2445666777776544 56656554
No 76
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=20.54 E-value=1e+02 Score=23.37 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=13.1
Q ss_pred eEEEEcCCCCeeEEEeccC
Q 029587 62 RVVVVDSAGNPLISVYRQD 80 (191)
Q Consensus 62 ~~~l~D~~G~~L~ti~~k~ 80 (191)
+..|.|..|.....|-++.
T Consensus 74 ~Y~F~D~TG~I~VeId~~~ 92 (126)
T TIGR00156 74 RYVFRDKSGEINVVIPAAV 92 (126)
T ss_pred eEEEECCCCCEEEEECHHH
Confidence 3577888887777776543
No 77
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=20.51 E-value=2.8e+02 Score=19.76 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=7.5
Q ss_pred CCeEEEcCCCCEEE
Q 029587 30 GDIGFADSSGDVIY 43 (191)
Q Consensus 30 ~~f~V~D~~G~~vf 43 (191)
++..++|.+|.++-
T Consensus 65 GnLvl~~~~g~~vW 78 (116)
T cd00028 65 GNLVIYDGSGTVVW 78 (116)
T ss_pred CCeEEEcCCCcEEE
Confidence 35555565555543
No 78
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=20.11 E-value=1.8e+02 Score=21.10 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=11.6
Q ss_pred CceEEEEcCCCCeeEEEecc
Q 029587 60 RKRVVVVDSAGNPLISVYRQ 79 (191)
Q Consensus 60 ~~~~~l~D~~G~~L~ti~~k 79 (191)
+.++.+.|..+.-.+++-..
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~ 87 (128)
T cd00004 68 GDKIYLTDGGKTYVYKVTSI 87 (128)
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 44567777655555555443
No 79
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=20.06 E-value=2e+02 Score=24.41 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=33.6
Q ss_pred EEEEEEee-ceEeCCCeEEEcC-CCCEEEEEecccccCccCccccCceEEEEcCCCC
Q 029587 17 DLFVSKKY-PGLTRGDIGFADS-SGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN 71 (191)
Q Consensus 17 ~l~vkqk~-~s~~~~~f~V~D~-~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~ 71 (191)
.|.+-+.- .-...+.|.|+|. +|+++|.+|..-. .....++.+..+.|-
T Consensus 104 ~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v------~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 104 RLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEV------VVGAEKLRVTGPEGA 154 (264)
T ss_pred eEEECCCccEEEecCeEEEEcCCCCceEEEecCCce------EEeeeeEEecCCccE
Confidence 44444443 3444568999998 8999999988754 355666677777776
Done!