Query 029587
Match_columns 191
No_of_seqs 113 out of 432
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 01:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 4.6E-43 1.6E-47 286.5 19.0 179 1-191 25-208 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.7 0.00021 7.2E-09 57.4 9.6 96 12-118 59-162 (217)
3 2v2f_A Penicillin binding prot 55.2 7.2 0.00025 20.0 1.9 13 33-45 8-20 (26)
4 3c5n_A Tubby-related protein 1 45.5 1.2E+02 0.004 24.4 8.9 71 82-155 32-119 (246)
5 2fim_A Tubby related protein 1 44.7 1.2E+02 0.004 24.8 8.6 71 82-155 56-143 (276)
6 3c12_A FLGD, flagellar protein 40.3 21 0.00072 25.8 3.0 17 61-77 41-57 (138)
7 2wzo_A Transforming growth fac 39.8 57 0.002 23.8 5.5 23 6-28 25-48 (146)
8 2pny_A Isopentenyl-diphosphate 38.1 48 0.0017 26.3 5.2 59 30-88 38-104 (246)
9 2h1z_A Hybrid atracotoxin; bet 36.0 26 0.00089 20.0 2.2 12 36-47 28-39 (39)
10 2ln7_A LPXTG-SITE transpeptida 35.3 10 0.00035 27.9 0.7 18 30-47 80-97 (147)
11 2dho_A Isopentenyl-diphosphate 30.8 97 0.0033 24.2 5.8 60 29-88 26-93 (235)
12 2hbp_A Cytoskeleton assembly c 30.8 78 0.0027 20.4 4.2 38 35-80 9-46 (68)
13 1hzt_A Isopentenyl diphosphate 30.1 50 0.0017 24.3 3.8 56 31-86 5-64 (190)
14 2heq_A YORP protein; SH3-like, 27.5 66 0.0023 21.0 3.4 31 17-48 35-65 (84)
15 3fn5_A Sortase A; sortase-fold 27.2 18 0.00061 27.9 0.8 21 29-49 102-122 (187)
16 3osv_A Flagellar basal-BODY RO 26.8 67 0.0023 23.1 3.9 16 62-77 40-55 (138)
17 2ovi_A Hypothetical protein CH 26.1 1.4E+02 0.0048 22.2 5.7 30 42-77 107-136 (164)
18 2kw8_A LPXTG-SITE transpeptida 24.5 20 0.0007 26.5 0.6 17 61-77 93-109 (158)
19 3rcc_A Sortase SRTA; sortase f 21.8 21 0.00071 26.6 0.2 42 29-77 84-126 (160)
20 2z4i_A Copper homeostasis prot 21.8 87 0.003 25.0 3.9 11 63-73 97-107 (233)
21 2hqv_A AGR_C_4470P; NESG, ATR9 21.6 1.6E+02 0.0056 22.7 5.4 30 42-77 132-161 (195)
22 1axh_A Atracotoxin-HVI, ACTX-H 21.6 55 0.0019 18.4 1.9 11 36-46 27-37 (37)
23 2fkb_A Putative nudix hydrolas 21.2 1.1E+02 0.0037 22.0 4.2 57 29-86 9-69 (180)
24 3isy_A Bsupi, intracellular pr 20.5 51 0.0018 23.6 2.1 17 31-47 45-61 (120)
25 3g66_A Sortase C; pilus, trans 20.3 36 0.0012 26.7 1.3 20 29-48 132-151 (212)
26 4g1j_A Sortase family protein; 20.2 36 0.0012 26.9 1.3 20 29-48 140-159 (222)
27 3oe3_A Putative periplasmic pr 20.1 1.4E+02 0.0048 20.5 4.2 38 25-75 47-84 (98)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=4.6e-43 Score=286.53 Aligned_cols=179 Identities=26% Similarity=0.624 Sum_probs=141.3
Q ss_pred CcccccccCCCCCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC
Q 029587 1 MAASGPIYTANSPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (191)
Q Consensus 1 ~~~v~~~~c~~~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~ 80 (191)
||+|+|+|| +++|++|+||||+++|++++|+|+|++|+++|+|+|+.+ +. +.++.|+|++|+||++|++|.
T Consensus 25 ~~vv~~~~~--~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~------~~-~~~~~l~D~~G~~l~~i~rk~ 95 (217)
T 1zxu_A 25 GVVVDPKYC--APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVF------GL-HDKRVLLDGSGTPVVTLREKM 95 (217)
T ss_dssp CCSSCGGGB--CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSST------TC-CSEEEEECTTSCEEEEEEC--
T ss_pred EEEECcccc--CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEcccc------CC-CCEEEEECCCCCEEEEEEccc
Confidence 689999999 899999999999999998999999999999999999976 44 667899999999999999985
Q ss_pred ---CccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCCCCCCcceEEEEcccCCceeEEEEC--CeEEEEEEee
Q 029587 81 ---KGLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDENSEDSASHFTIKGSPFQKSCTIYRG--NSIIAQTSLM 155 (191)
Q Consensus 81 ---~~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~~~~~~~~~~v~G~~~~~~~~I~~~--~~~VAeV~rk 155 (191)
+++|++|.+++.++++++|+|||++...++++++|+++++.. ++.++|+|+|+|++++|+|+++ |++||+|+||
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~-~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~kk 174 (217)
T 1zxu_A 96 VSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKD-EKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRK 174 (217)
T ss_dssp ----CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC--CCCSEEEESCTTTTCCEEEETTTCCEEEEEEEC
T ss_pred cccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCC-CCceEEEEEEeEeCCEEEEEECCCCEEEEEEEee
Confidence 689999999876555689999998422379999999886532 3457899999999999999999 7999999999
Q ss_pred eeeeeEEEeeceEEEEEcCCCCcHHHHHHhheeeeC
Q 029587 156 YKLQQIYVRRNKFRLTIFPTSIEPAVIVALVVIFLD 191 (191)
Q Consensus 156 ~~~~~~~~~~dty~l~V~pg~vD~a~i~alvvI~~D 191 (191)
++.+++++++|+|.|+|.|+ +|.+|+||+| ++||
T Consensus 175 ~~~~~~~~~~D~y~l~V~p~-~D~aliialv-v~iD 208 (217)
T 1zxu_A 175 HTVQSVFLGKDNFSVTVYPN-VDYAFIASLV-VILD 208 (217)
T ss_dssp --------CBCSEEEEECTT-SBHHHHHHHH-HHHH
T ss_pred eeccccccCCcEEEEEECCC-CCHHHHHHHH-HHHH
Confidence 98888999999999999999 8999999999 6665
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.70 E-value=0.00021 Score=57.36 Aligned_cols=96 Identities=21% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCcEEEEEEEeeceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCC----eeEEEecc--C--Ccc
Q 029587 12 SPIPVDLFVSKKYPGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGN----PLISVYRQ--D--KGL 83 (191)
Q Consensus 12 ~~~~~~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~----~L~ti~~k--~--~~~ 83 (191)
......|.+..+.+++++ .+.|+|.+|++++++..+.+ +++ .+..++++.+. ||++|+++ . .+.
T Consensus 59 ~~G~~vf~V~~~~~~~~~-~~~l~D~~G~~l~~i~rk~~------~~~-~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~ 130 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLHD-KRVLLDGSGTPVVTLREKMV------SMH-DRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK 130 (217)
T ss_dssp TTSCEEEEEECSSTTCCS-EEEEECTTSCEEEEEEC-------------CEEEEEETTCCCGGGEEEEEEC-------CC
T ss_pred CCCCEEEEEEccccCCCC-EEEEECCCCCEEEEEEcccc------ccC-cEEEEEcCCCCCCCcEEEEEEEeccccCCCe
Confidence 356688999999888864 99999999999999999876 564 45688888765 79999997 3 578
Q ss_pred ceeEecCCCCcceeEEEEEecccCCCcceEEEEEe
Q 029587 84 WQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIV 118 (191)
Q Consensus 84 w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~ 118 (191)
|+++.++...++.+.++|+.+ ++..+++|.-.
T Consensus 131 ~~V~~~~~~~~~~~~~~I~G~---~~~~~f~I~~~ 162 (217)
T 1zxu_A 131 LDVFLGHNKDEKRCDFRVKGS---WLERSCVVYAG 162 (217)
T ss_dssp EEEEETTCCC-CCCSEEEESC---TTTTCCEEEET
T ss_pred EEEEECCCCCCCceEEEEEEe---EeCCEEEEEEC
Confidence 999987644333466777654 34566777643
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=55.24 E-value=7.2 Score=19.98 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=10.3
Q ss_pred EEEcCCCCEEEEE
Q 029587 33 GFADSSGDVIYRV 45 (191)
Q Consensus 33 ~V~D~~G~~vf~V 45 (191)
.|||.+|+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 5788888888776
No 4
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=45.52 E-value=1.2e+02 Score=24.36 Aligned_cols=71 Identities=8% Similarity=0.054 Sum_probs=41.9
Q ss_pred ccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCC-C-CCCcceEEEEcccCCceeEEEECC-------------
Q 029587 82 GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN-S-EDSASHFTIKGSPFQKSCTIYRGN------------- 146 (191)
Q Consensus 82 ~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~-~-~~~~~~~~v~G~~~~~~~~I~~~~------------- 146 (191)
+++..|..++. +.-+...||.. ..-.+.|-|++.... + +.+..-=+|+-|+++..|+|+++|
T Consensus 32 p~y~l~~~~~~--~~fLlaark~~-~~~~s~YiIS~d~~dlsr~s~~yvGKLrsNf~Gt~F~iyD~g~~p~~~~s~~~~~ 108 (246)
T 3c5n_A 32 PSYFLHLDTEK--KVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVAS 108 (246)
T ss_dssp CEEEEEESSSS--CCEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSCBCGGGCTTSCGGG
T ss_pred eEEEEEEeCCC--cEEEEeeeecc-CCCCceEEEEeCccccccCCceEEEEEEEccCCCEEEEECCCCCcccccCccccc
Confidence 56666665431 22455556653 333567888765321 1 112223466889999999999875
Q ss_pred --eEEEEEEee
Q 029587 147 --SIIAQTSLM 155 (191)
Q Consensus 147 --~~VAeV~rk 155 (191)
..+|.|.-+
T Consensus 109 ~r~el~~v~Ye 119 (246)
T 3c5n_A 109 LRQELAAVIYE 119 (246)
T ss_dssp BCCEEEEEEEC
T ss_pred ccEEEEEEEEE
Confidence 677778765
No 5
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=44.66 E-value=1.2e+02 Score=24.79 Aligned_cols=71 Identities=7% Similarity=0.054 Sum_probs=43.4
Q ss_pred ccceeEecCCCCcceeEEEEEecccCCCcceEEEEEecCC--CCCCcceEEEEcccCCceeEEEECC-------------
Q 029587 82 GLWQGFKGDDGEEKELIFKVNRTMKTLTRTEFEVFIVDEN--SEDSASHFTIKGSPFQKSCTIYRGN------------- 146 (191)
Q Consensus 82 ~~w~~~~~~~~~~~~~~f~vkk~~~~~~k~~~~V~~~~~~--~~~~~~~~~v~G~~~~~~~~I~~~~------------- 146 (191)
+++..|..++ .+..+...||.. ..-...|-|++.... .+.+..-=+|+-|+++..|+||++|
T Consensus 56 p~y~L~l~~~--~~~fLLaarK~k-~~~ts~YiIS~d~~dlsr~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~ 132 (276)
T 2fim_A 56 PSYFLHLDTE--KKVFLLAGRKRK-RSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVAS 132 (276)
T ss_dssp CEEEEEECSS--SCEEEEEEEECT-TCSSCEEEEESCTTC------CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGG
T ss_pred eEEEEEEeCC--CCEEEEEEEecc-CCCCceEEEEecchhcccCCceEEEEEEEccCCCEEEEECCCCCcccccCccccc
Confidence 5777777542 223455666653 334577888765321 1112223467889999999999875
Q ss_pred --eEEEEEEee
Q 029587 147 --SIIAQTSLM 155 (191)
Q Consensus 147 --~~VAeV~rk 155 (191)
..+|.|.-+
T Consensus 133 ~r~el~~V~Ye 143 (276)
T 2fim_A 133 LRQELAAVIYE 143 (276)
T ss_dssp BCCEEEEEEEC
T ss_pred ccEEEEEEEEE
Confidence 567777755
No 6
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=40.29 E-value=21 Score=25.82 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=13.2
Q ss_pred ceEEEEcCCCCeeEEEe
Q 029587 61 KRVVVVDSAGNPLISVY 77 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~ 77 (191)
-.+.|+|++|+.+-++.
T Consensus 41 v~v~I~d~~G~~V~t~~ 57 (138)
T 3c12_A 41 VNFEITDANGTFVKQLS 57 (138)
T ss_dssp EEEEEECSSCCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEE
Confidence 35788888888888875
No 7
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=39.80 E-value=57 Score=23.78 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=17.0
Q ss_pred cccCCC-CCCcEEEEEEEeeceEe
Q 029587 6 PIYTAN-SPIPVDLFVSKKYPGLT 28 (191)
Q Consensus 6 ~~~c~~-~~~~~~l~vkqk~~s~~ 28 (191)
+.||.. .-+|+-|...++.+|..
T Consensus 25 ~~fh~~~~IyPvGy~~~R~y~s~~ 48 (146)
T 2wzo_A 25 PGFHDESAIYPVGYCSTRIYASMK 48 (146)
T ss_dssp GGGBCSSCBCCEEEEEEEEEECSS
T ss_pred CCccCCCceeCCCEEEEEEEeccc
Confidence 456642 36799999999988874
No 8
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=38.14 E-value=48 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=35.0
Q ss_pred CCeEEEcCCCCEEEEEecccccC----ccCccccCceEEEEcCCCCeeEEEeccC----CccceeEe
Q 029587 30 GDIGFADSSGDVIYRVNRTQHQS----KSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQGFK 88 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g~~~~~----~~~~s~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~~~ 88 (191)
.-+.|+|++|+++.++.-...-+ ....--+.-.+.+.|.+|+.|++-|... .+.|..-.
T Consensus 38 E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~W~~p~ 104 (246)
T 2pny_A 38 EMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSC 104 (246)
T ss_dssp CEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCBCCSE
T ss_pred ceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCceEecc
Confidence 46899999999999986543200 0000011224468899998877654332 24787443
No 9
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=36.02 E-value=26 Score=19.97 Aligned_cols=12 Identities=17% Similarity=0.531 Sum_probs=10.2
Q ss_pred cCCCCEEEEEec
Q 029587 36 DSSGDVIYRVNR 47 (191)
Q Consensus 36 D~~G~~vf~V~g 47 (191)
++||+.|+|.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 789999999763
No 10
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=35.28 E-value=10 Score=27.89 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=8.4
Q ss_pred CCeEEEcCCCCEEEEEec
Q 029587 30 GDIGFADSSGDVIYRVNR 47 (191)
Q Consensus 30 ~~f~V~D~~G~~vf~V~g 47 (191)
|.+.|++.++...|+|+.
T Consensus 80 D~i~v~~~~~~~~Y~V~~ 97 (147)
T 2ln7_A 80 DTLVLEYDNKTYTYEIQK 97 (147)
T ss_dssp CEEEEEETTEEEEEEEEE
T ss_pred CEEEEEECCcEEEEEEEe
Confidence 344444444444444444
No 11
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=30.84 E-value=97 Score=24.20 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCCeEEEcCCCCEEEEEecccccC----ccCccccCceEEEEcCCCCeeEEEeccC----CccceeEe
Q 029587 29 RGDIGFADSSGDVIYRVNRTQHQS----KSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQGFK 88 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~~~~~----~~~~s~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~~~ 88 (191)
..-+.|+|++|+++.++.-+..-+ ....--+.-.+.+.|.+|+.|++-|... .+.|..-.
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTCEESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCcEEecc
Confidence 346999999999999985543200 0000011223468899998887654332 24787543
No 12
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=30.81 E-value=78 Score=20.43 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=30.3
Q ss_pred EcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC
Q 029587 35 ADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD 80 (191)
Q Consensus 35 ~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~ 80 (191)
+|.+|+ |+|++.+. ..++.++.|.=.+|..+.-=-.||
T Consensus 9 tDrtG~--F~VeA~fl------g~~dgki~LhK~nGv~I~VP~~kl 46 (68)
T 2hbp_A 9 VDRSGT--FKVDAEFI------GCAKGKIHLHKANGVKIAVAADKL 46 (68)
T ss_dssp EBSSSC--CEEEEEEE------EEETTEEEEECTTSCEEEEETTSB
T ss_pred EcCCCC--eEEEEEEE------EEeCCEEEEEecCCcEEEeEhHHc
Confidence 477776 89999987 677888999999998877666665
No 13
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=30.15 E-value=50 Score=24.34 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=17.9
Q ss_pred CeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC----Ccccee
Q 029587 31 DIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQG 86 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~ 86 (191)
-+.|+|++|+++..+.-...-.+.....+.-.+.+.+.+|+.|+.-|... ...|..
T Consensus 5 ~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~w~~ 64 (190)
T 1hzt_A 5 HVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTN 64 (190)
T ss_dssp --------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTCEEE
T ss_pred EEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCcccC
Confidence 57899999999987765543101000011224578888898777655332 367877
No 14
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=27.47 E-value=66 Score=21.01 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.9
Q ss_pred EEEEEEeeceEeCCCeEEEcCCCCEEEEEecc
Q 029587 17 DLFVSKKYPGLTRGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 17 ~l~vkqk~~s~~~~~f~V~D~~G~~vf~V~g~ 48 (191)
+=.|-+++.|+.= +|+|.|++|+.-|.=+..
T Consensus 35 kGkIie~~hSa~Y-DYaVsdetGdIt~fKEhE 65 (84)
T 2heq_A 35 KGKIIEHLHSATY-DYAVSDETGDITYFKEHE 65 (84)
T ss_dssp EEEEEEECCCSSC-SEEEEETTSCEEEECGGG
T ss_pred ccchhhhhhhhee-eeeeecccCceeeeeccc
Confidence 4456788889875 999999999998876655
No 15
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=27.22 E-value=18 Score=27.91 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=14.8
Q ss_pred CCCeEEEcCCCCEEEEEeccc
Q 029587 29 RGDIGFADSSGDVIYRVNRTQ 49 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~~ 49 (191)
||.+.|++.++...|+|+...
T Consensus 102 GD~I~v~~~~~~~~Y~V~~~~ 122 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKDVF 122 (187)
T ss_dssp TCEEEEECSSEEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeEE
Confidence 567777777777777777753
No 16
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=26.77 E-value=67 Score=23.05 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=10.7
Q ss_pred eEEEEcCCCCeeEEEe
Q 029587 62 RVVVVDSAGNPLISVY 77 (191)
Q Consensus 62 ~~~l~D~~G~~L~ti~ 77 (191)
++.++|++|+.+-++.
T Consensus 40 ~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 40 WVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4667777777766664
No 17
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=26.15 E-value=1.4e+02 Score=22.20 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEecccccCccCccccCceEEEEcCCCCeeEEEe
Q 029587 42 IYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVY 77 (191)
Q Consensus 42 vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~ 77 (191)
+|-|+-... ....+.+.++|++|+.++.|-
T Consensus 107 ~~~V~kp~~------~g~~~SlqfFd~~G~~i~kif 136 (164)
T 2ovi_A 107 IALIERKFM------GMDTASILFFNKEGSAMLKIF 136 (164)
T ss_dssp EEEEEEEET------TEEEEEEEEECTTSSEEEEEE
T ss_pred EEEEEeecC------CCcEEEEEEECCCCCEEEEEE
Confidence 555655433 222456788999999888774
No 18
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=24.52 E-value=20 Score=26.51 Aligned_cols=17 Identities=12% Similarity=0.174 Sum_probs=7.8
Q ss_pred ceEEEEcCCCCeeEEEe
Q 029587 61 KRVVVVDSAGNPLISVY 77 (191)
Q Consensus 61 ~~~~l~D~~G~~L~ti~ 77 (191)
.++.+.+..+.-.+++.
T Consensus 93 d~i~v~~~~~~~~Y~V~ 109 (158)
T 2kw8_A 93 DKIYLYDNENEYEYAVT 109 (158)
T ss_dssp CEEEEECSSEEEEEEEE
T ss_pred CEEEEEECCcEEEEEEE
Confidence 34555555444444443
No 19
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=21.79 E-value=21 Score=26.64 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcC-CCCeeEEEe
Q 029587 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDS-AGNPLISVY 77 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~-~G~~L~ti~ 77 (191)
||.+.|++.++...|+|+.... ..+.++.++++ .|++.+||-
T Consensus 84 GD~i~v~~~~~~~~Y~V~~~~v-------v~p~~~~~l~~~~~~~~ltLi 126 (160)
T 3rcc_A 84 GMKVYLTDKSKVYTYTITEISK-------VTPEHVEVIDDTPGKSQLTLV 126 (160)
T ss_dssp TCEECCBCSSCBCCEEEEEEEE-------ECTTCCCCCCCCTTCCEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEEE-------ECcccceeeccCCCCCEEEEE
Confidence 4566666777777777776532 22333333333 456666554
No 20
>2z4i_A Copper homeostasis protein CUTF; outer memblane lipoprotein, beta barrel, OB-fold, 3D domain swapping, signaling protein activator; HET: P6G; 2.60A {Escherichia coli} PDB: 2z4h_A*
Probab=21.78 E-value=87 Score=25.00 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=6.8
Q ss_pred EEEEcCCCCee
Q 029587 63 VVVVDSAGNPL 73 (191)
Q Consensus 63 ~~l~D~~G~~L 73 (191)
|.++|.+|+++
T Consensus 97 L~mLD~~G~~i 107 (233)
T 2z4i_A 97 LEMLDREGNPI 107 (233)
T ss_dssp EEEECTTSCBC
T ss_pred EEEECCCCCcC
Confidence 45666666665
No 21
>2hqv_A AGR_C_4470P; NESG, ATR92, Q7CX01_AGRT5, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: e.62.1.2
Probab=21.64 E-value=1.6e+02 Score=22.67 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEecccccCccCccccCceEEEEcCCCCeeEEEe
Q 029587 42 IYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVY 77 (191)
Q Consensus 42 vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~ 77 (191)
+|-|+-... ....+.+.++|++|+.++.|-
T Consensus 132 ~~~V~kpt~------~g~~~SlqfFD~~G~aI~Kif 161 (195)
T 2hqv_A 132 ITFVDRGFH------GRRSCSVWFMNAAGGAMFKIF 161 (195)
T ss_dssp EEEEEEEET------TEEEEEEEEEETTSSEEEEEE
T ss_pred EEEEEeccC------CCcEEEEEEECCCCCEEEEEE
Confidence 566666543 222456789999999998884
No 22
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=21.63 E-value=55 Score=18.37 Aligned_cols=11 Identities=18% Similarity=0.607 Sum_probs=9.3
Q ss_pred cCCCCEEEEEe
Q 029587 36 DSSGDVIYRVN 46 (191)
Q Consensus 36 D~~G~~vf~V~ 46 (191)
++|||.|+|.+
T Consensus 27 NeNGntV~RC~ 37 (37)
T 1axh_A 27 NENGNTVKRCD 37 (37)
T ss_dssp CSSSCEEEEEC
T ss_pred ccCCcEeeecC
Confidence 68999999864
No 23
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2
Probab=21.17 E-value=1.1e+02 Score=21.98 Aligned_cols=57 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEEEeccC----Ccccee
Q 029587 29 RGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLISVYRQD----KGLWQG 86 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~ti~~k~----~~~w~~ 86 (191)
..-+.|+|.+|+++....-... .......+.--+.+.|.+|+.|+.-|... .+.|..
T Consensus 9 ~E~~~i~d~~~~~~g~~~r~~~-~~~~~~~~~~~v~i~~~~~~vLl~~R~~~~~~~~g~w~l 69 (180)
T 2fkb_A 9 TEWVDIVNEENEVIAQASREQM-RAQCLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDA 69 (180)
T ss_dssp CCEEEEECTTSCEEEEEEHHHH-HHHTCCEEEEEEEEECSSSCEEEEEECSSCSSSTTCEES
T ss_pred CeeEEEECCCCCEeeEEEHHHh-hccCceeeEEEEEEECCCCEEEEEECCCCCccCCCcEEe
Confidence 3468999999999998865421 00000111224567899999887544332 245766
No 24
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.53 E-value=51 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.4
Q ss_pred CeEEEcCCCCEEEEEec
Q 029587 31 DIGFADSSGDVIYRVNR 47 (191)
Q Consensus 31 ~f~V~D~~G~~vf~V~g 47 (191)
+|.|+|++|+.|+|=..
T Consensus 45 Df~v~d~~G~~VwrwS~ 61 (120)
T 3isy_A 45 ELVVYDSEHKERYRYSK 61 (120)
T ss_dssp EEEEECTTCCEEEETTT
T ss_pred EEEEECCCCCEEEEccc
Confidence 68888999998887543
No 25
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=20.33 E-value=36 Score=26.74 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=11.4
Q ss_pred CCCeEEEcCCCCEEEEEecc
Q 029587 29 RGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~ 48 (191)
||.+.|++.+|...|+|+..
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 44555555556666666554
No 26
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=20.22 E-value=36 Score=26.95 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=12.2
Q ss_pred CCCeEEEcCCCCEEEEEecc
Q 029587 29 RGDIGFADSSGDVIYRVNRT 48 (191)
Q Consensus 29 ~~~f~V~D~~G~~vf~V~g~ 48 (191)
||.+.|++.++...|+|+..
T Consensus 140 GD~I~v~~~~~~~~Y~V~~~ 159 (222)
T 4g1j_A 140 GDRFYIEHIGGKIAYQVDQI 159 (222)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 45566666666666666654
No 27
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=20.07 E-value=1.4e+02 Score=20.50 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=21.2
Q ss_pred ceEeCCCeEEEcCCCCEEEEEecccccCccCccccCceEEEEcCCCCeeEE
Q 029587 25 PGLTRGDIGFADSSGDVIYRVNRTQHQSKSNSSQRRKRVVVVDSAGNPLIS 75 (191)
Q Consensus 25 ~s~~~~~f~V~D~~G~~vf~V~g~~~~~~~~~s~~~~~~~l~D~~G~~L~t 75 (191)
.|=+|-.|.--|.+|..++.-+|. +..|.|..|+|++.
T Consensus 47 ~SASGarY~~~~~~~~y~lwtKG~-------------eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 47 KMASGANYEAIDKNYTYKLYTKGK-------------TAELVEGDDKPVLS 84 (98)
T ss_dssp EC--CEEEEESSTTCCCEEEEETT-------------EEEEEETTTEEEEE
T ss_pred EecCcceEEccCCCCcEEEEEeCC-------------cEEEEECCCCEEEc
Confidence 333444555445555555554443 45788888888774
Done!