Your job contains 1 sequence.
>029588
MQKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL
NAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDD
RDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKAEMQQSNKDMRKN
RKKEVEAEVTA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 029588
(191 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2082304 - symbol:AT3G01790 species:3702 "Arabi... 593 1.1e-57 1
UNIPROTKB|P66065 - symbol:rplM "50S ribosomal protein L13... 283 7.6e-25 1
TIGR_CMR|BA_0143 - symbol:BA_0143 "ribosomal protein L13"... 278 2.6e-24 1
TIGR_CMR|GSU_2876 - symbol:GSU_2876 "ribosomal protein L1... 266 4.8e-23 1
POMBASE|SPBC16G5.04 - symbol:mrpl23 "mitochondrial riboso... 255 7.0e-22 1
UNIPROTKB|P0AA10 - symbol:rplM species:83333 "Escherichia... 253 1.1e-21 1
TIGR_CMR|ECH_1019 - symbol:ECH_1019 "ribosomal protein L1... 253 1.1e-21 1
TIGR_CMR|DET_0505 - symbol:DET_0505 "ribosomal protein L1... 245 8.0e-21 1
TIGR_CMR|SPO_1691 - symbol:SPO_1691 "ribosomal protein L1... 244 1.0e-20 1
TIGR_CMR|CJE_1653 - symbol:CJE_1653 "ribosomal protein L1... 240 2.7e-20 1
UNIPROTKB|Q9KUF1 - symbol:rplM "50S ribosomal protein L13... 237 5.7e-20 1
TIGR_CMR|VC_0570 - symbol:VC_0570 "ribosomal protein L13"... 237 5.7e-20 1
TIGR_CMR|SO_3940 - symbol:SO_3940 "ribosomal protein L13"... 234 1.2e-19 1
TIGR_CMR|CHY_2274 - symbol:CHY_2274 "ribosomal protein L1... 231 2.5e-19 1
TIGR_CMR|NSE_0840 - symbol:NSE_0840 "ribosomal protein L1... 231 2.5e-19 1
TIGR_CMR|CPS_4443 - symbol:CPS_4443 "ribosomal protein L1... 230 3.1e-19 1
TIGR_CMR|APH_1108 - symbol:APH_1108 "ribosomal protein L1... 224 1.4e-18 1
CGD|CAL0004144 - symbol:orf19.3348 species:5476 "Candida ... 220 3.6e-18 1
ASPGD|ASPL0000005099 - symbol:AN9469 species:162425 "Emer... 212 2.5e-17 1
ZFIN|ZDB-GENE-050522-167 - symbol:mrpl13 "mitochondrial r... 208 6.7e-17 1
DICTYBASE|DDB_G0274959 - symbol:mrpl13 "ribosomal protein... 207 8.6e-17 1
SGD|S000005676 - symbol:MRPL23 "Mitochondrial ribosomal p... 206 1.1e-16 1
TAIR|locus:2203010 - symbol:emb1473 "embryo defective 147... 203 2.3e-16 1
UNIPROTKB|E2RT81 - symbol:MRPL13 "Uncharacterized protein... 194 2.0e-15 1
UNIPROTKB|J9P023 - symbol:MRPL13 "Uncharacterized protein... 194 2.0e-15 1
UNIPROTKB|F1S286 - symbol:MRPL13 "Uncharacterized protein... 192 3.3e-15 1
UNIPROTKB|Q3SYS1 - symbol:MRPL13 "39S ribosomal protein L... 190 5.4e-15 1
MGI|MGI:2137218 - symbol:Mrpl13 "mitochondrial ribosomal ... 186 1.4e-14 1
UNIPROTKB|Q9BYD1 - symbol:MRPL13 "39S ribosomal protein L... 184 2.3e-14 1
RGD|1359587 - symbol:Mrpl13 "mitochondrial ribosomal prot... 181 4.9e-14 1
UNIPROTKB|K7GP19 - symbol:MRPL13 "Uncharacterized protein... 174 2.7e-13 1
UNIPROTKB|E5RJI7 - symbol:MRPL13 "39S ribosomal protein L... 166 1.9e-12 1
FB|FBgn0032720 - symbol:mRpL13 "mitochondrial ribosomal p... 152 5.8e-11 1
GENEDB_PFALCIPARUM|PFB0645c - symbol:PFB0645c "Ribosomal ... 143 5.2e-10 1
UNIPROTKB|O96222 - symbol:PFB0645c "Mitochondrial large r... 143 5.2e-10 1
UNIPROTKB|F1LYZ7 - symbol:F1LYZ7 "Uncharacterized protein... 122 8.7e-08 1
WB|WBGene00008769 - symbol:mrpl-13 species:6239 "Caenorha... 118 1.2e-06 1
>TAIR|locus:2082304 [details] [associations]
symbol:AT3G01790 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
OMA:FEITQVA EMBL:BT010192 EMBL:AK227266 IPI:IPI00520902
RefSeq:NP_186828.2 RefSeq:NP_850494.1 UniGene:At.41230
ProteinModelPortal:Q7XA68 SMR:Q7XA68 STRING:Q7XA68 PaxDb:Q7XA68
PRIDE:Q7XA68 EnsemblPlants:AT3G01790.1 EnsemblPlants:AT3G01790.2
GeneID:821078 KEGG:ath:AT3G01790 TAIR:At3g01790 InParanoid:Q7XA68
PhylomeDB:Q7XA68 ProtClustDB:PLN00205 Genevestigator:Q7XA68
Uniprot:Q7XA68
Length = 205
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 116/191 (60%), Positives = 137/191 (71%)
Query: 1 MQKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 60
++KA+AG++RINL+GLRWRVFDA+GQVLGRLASQ++TV+Q KDKPTY PNRDDGD+CIVL
Sbjct: 15 LKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVL 74
Query: 61 NAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXX 120
NAK+I TGRKL +K Y WHTGYIGHLKER+LK+QM +DPTE IRKAV RMLP N
Sbjct: 75 NAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDD 134
Query: 121 XXXXXXIFPGSEHPFGDRPLEPYXXXXXXXXXXXXXXXXAMIREQKKAEMQQSNKDMRKN 180
IF G EHPFGD+PLEP+ AMIR QKKAE ++ K
Sbjct: 135 RDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAENEGTEVKK 194
Query: 181 RKKEVEAEVTA 191
KK +EV A
Sbjct: 195 GKKRTLSEVPA 205
>UNIPROTKB|P66065 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005829
GO:GO:0005886 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:A70977 RefSeq:NP_217960.1
RefSeq:NP_338075.1 RefSeq:YP_006516932.1 ProteinModelPortal:P66065
SMR:P66065 PhosSite:P12061578 PRIDE:P66065
EnsemblBacteria:EBMYCT00000002385 EnsemblBacteria:EBMYCT00000071846
GeneID:13317050 GeneID:887584 GeneID:926638 KEGG:mtc:MT3548
KEGG:mtu:Rv3443c KEGG:mtv:RVBD_3443c PATRIC:18129537
TubercuList:Rv3443c OMA:FEITQVA ChEMBL:CHEMBL1933 Uniprot:P66065
Length = 147
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 55/126 (43%), Positives = 76/126 (60%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA VLGRLA A +++GK KPT+APN D GD IV+NA + ++G KL++K+
Sbjct: 15 WYVIDATDVVLGRLAVAAANLLRGKHKPTFAPNVDGGDFVIVINADKVAISGDKLQHKMV 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFGD 137
Y H+GY G L +RT+ E M+R P + KA+L MLP+N ++ G EHP
Sbjct: 75 YRHSGYPGGLHKRTIGELMQRHPDRVVEKAILGMLPKNRLSRQIQRKLRVYAGPEHPHSA 134
Query: 138 RPLEPY 143
+ PY
Sbjct: 135 QQPVPY 140
>TIGR_CMR|BA_0143 [details] [associations]
symbol:BA_0143 "ribosomal protein L13" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286
KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:NP_842710.1 RefSeq:YP_016748.1 RefSeq:YP_026429.1
ProteinModelPortal:Q81VP9 SMR:Q81VP9 DNASU:1086446
EnsemblBacteria:EBBACT00000011142 EnsemblBacteria:EBBACT00000017416
EnsemblBacteria:EBBACT00000024437 GeneID:1086446 GeneID:2819438
GeneID:2851608 KEGG:ban:BA_0143 KEGG:bar:GBAA_0143 KEGG:bat:BAS0143
OMA:MLPKTRL BioCyc:BANT260799:GJAJ-154-MONOMER
BioCyc:BANT261594:GJ7F-156-MONOMER Uniprot:Q81VP9
Length = 145
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+W V DA+GQ LGRLAS+VA++++GK+KPT+ P+ D GD I++NA+ I +TG KL +K+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFG 136
YY HT + G LK+RT E P + + A+ MLP+ ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEMRTNYPVQMLELAIKGMLPKGRLGRQVSKKLNVYAGAEHPHQ 134
Query: 137 DRPLEPY 143
+ E Y
Sbjct: 135 AQKPEVY 141
>TIGR_CMR|GSU_2876 [details] [associations]
symbol:GSU_2876 "ribosomal protein L13" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:NP_953918.1 ProteinModelPortal:Q748X4 SMR:Q748X4
GeneID:2688685 KEGG:gsu:GSU2876 PATRIC:22028613
HOGENOM:HOG000225288 BioCyc:GSUL243231:GH27-2865-MONOMER
Uniprot:Q748X4
Length = 143
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 49/117 (41%), Positives = 74/117 (63%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + DA +VLGR+A+++A +++GK KP Y P+ D GD +V+NA + +TG KL +K+Y
Sbjct: 16 WYLVDADNKVLGRMATEIANILRGKKKPIYTPSVDTGDFVVVVNAAKLQLTGNKLADKMY 75
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
Y HTG+ G +K T + +E+ P + IRKAV MLP+N ++ G EHP
Sbjct: 76 YHHTGFPGGIKSITAGKLIEKKPEDLIRKAVKGMLPKNKLARHMLKKLKVYAGPEHP 132
>POMBASE|SPBC16G5.04 [details] [associations]
symbol:mrpl23 "mitochondrial ribosomal protein subunit
L13 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0032543 "mitochondrial translation"
evidence=NAS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
PomBase:SPBC16G5.04 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0005762 GO:GO:0003735 GO:GO:0032543 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC HOGENOM:HOG000225288 PIR:T39596
RefSeq:NP_596753.1 ProteinModelPortal:O60118 STRING:O60118
EnsemblFungi:SPBC16G5.04.1 GeneID:2540088 KEGG:spo:SPBC16G5.04
OrthoDB:EOG46T69R NextBio:20801225 Uniprot:O60118
Length = 157
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 53/119 (44%), Positives = 72/119 (60%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W AK LGRLASQ+AT + GK KP Y P D GD+ +V + +I ++GRKL+N Y
Sbjct: 16 WHHVSAKNVPLGRLASQIATTLMGKHKPIYHPAADCGDVVVVTDCSEIGISGRKLENHKY 75
Query: 78 YWHTGYIGHLKERTLKEQM-ERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF 135
Y H+G GHLKE T++E +R + +R+AV MLPRN I+ G+EHP+
Sbjct: 76 YSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGMLPRNKLWDRRMKRLYIYDGAEHPY 134
>UNIPROTKB|P0AA10 [details] [associations]
symbol:rplM species:83333 "Escherichia coli K-12"
[GO:0008270 "zinc ion binding" evidence=IDA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0008270 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 PDB:2RDO PDBsum:2RDO eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066 PDB:3J0T PDB:3J0W
PDB:3J0Y PDB:3J11 PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T
PDBsum:3J0W PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14
PDBsum:3SGF PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8
PDB:1VT2 PDB:2AW4 PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V
PDB:2J28 PDB:2QAM PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG
PDB:2QBI PDB:2QBK PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2WWQ
PDB:2Z4L PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P
PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01
PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ
PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:4GAR
PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3E1B PDBsum:3E1D
PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T
PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT PDBsum:3IZU PDBsum:3J01
PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC
PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0
PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B EMBL:X02130
PIR:A02787 RefSeq:NP_417698.1 RefSeq:YP_491415.1 PDB:3BBX
PDBsum:3BBX ProteinModelPortal:P0AA10 SMR:P0AA10 DIP:DIP-47837N
IntAct:P0AA10 MINT:MINT-1269598 PaxDb:P0AA10 PRIDE:P0AA10
EnsemblBacteria:EBESCT00000001772 EnsemblBacteria:EBESCT00000018148
GeneID:12932920 GeneID:947828 KEGG:ecj:Y75_p3151 KEGG:eco:b3231
PATRIC:32121888 EchoBASE:EB0867 EcoGene:EG10874
BioCyc:EcoCyc:EG10874-MONOMER BioCyc:ECOL316407:JW3200-MONOMER
EvolutionaryTrace:P0AA10 Genevestigator:P0AA10 Uniprot:P0AA10
Length = 142
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 51/116 (43%), Positives = 69/116 (59%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA G+ LGRLA+++A ++GK K Y P+ D GD IVLNA + VTG K +KVY
Sbjct: 15 WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
Y HTG+IG +K+ T +E + R P I AV MLP+ ++ G+EH
Sbjct: 75 YHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEH 130
>TIGR_CMR|ECH_1019 [details] [associations]
symbol:ECH_1019 "ribosomal protein L13" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_507805.1 ProteinModelPortal:Q2GFH8 STRING:Q2GFH8
GeneID:3927274 KEGG:ech:ECH_1019 PATRIC:20577408
BioCyc:ECHA205920:GJNR-1022-MONOMER Uniprot:Q2GFH8
Length = 156
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 54/118 (45%), Positives = 69/118 (58%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
RW V DA G V+GRLA+ VA +++GKDKP Y P+ D GD I++NA+ + TG KLKNKV
Sbjct: 16 RWVVIDADGVVVGRLAAFVANILRGKDKPEYTPHMDCGDNVIIINAEKVHFTGSKLKNKV 75
Query: 77 YYWHTGYIGHLKERTLKEQ-MERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
YY HTGY G LK T + + + P I AV RML ++ G EH
Sbjct: 76 YYRHTGYPGGLKSCTPADLFLNKHPERIINMAVRRMLSTGPMARRRLKNLYVYSGPEH 133
>TIGR_CMR|DET_0505 [details] [associations]
symbol:DET_0505 "ribosomal protein L13" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:CP000027
GenomeReviews:CP000027_GR eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_181249.1 ProteinModelPortal:Q3Z950
STRING:Q3Z950 GeneID:3230210 KEGG:det:DET0505 PATRIC:21608079
BioCyc:DETH243164:GJNF-505-MONOMER Uniprot:Q3Z950
Length = 143
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 45/117 (38%), Positives = 66/117 (56%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA G+VLG +A++ A + GK KP + N D GD +++NAK + VTG KL K+Y
Sbjct: 15 WHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIINAKKVTVTGNKLDQKIY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
Y H+G+ G ++ L + ++ P I AV M+PRN ++ G EHP
Sbjct: 75 YRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQILAKLKVYEGEEHP 131
>TIGR_CMR|SPO_1691 [details] [associations]
symbol:SPO_1691 "ribosomal protein L13" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HSSP:O59300 HOGENOM:HOG000225286 KO:K02871
TIGRFAMs:TIGR01066 OMA:YTPHMDC ProtClustDB:PRK09216
HAMAP:MF_01366_B RefSeq:YP_166930.1 ProteinModelPortal:Q5LSS5
SMR:Q5LSS5 GeneID:3193556 KEGG:sil:SPO1691 PATRIC:23376707
Uniprot:Q5LSS5
Length = 152
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+W + DA+G VLGRLAS VA ++GK K ++ P+ D GD IV+NA + +TG+K + +
Sbjct: 14 KWILIDAEGVVLGRLASIVAMRLRGKHKASFTPHMDMGDNVIVINADKVQITGKK-REEH 72
Query: 77 YYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+YWHTG+ G +K RT ++ +E P + +AV RMLP N I+ G+EHP
Sbjct: 73 FYWHTGHPGGIKSRTKQQILEGAHPERVVYQAVKRMLPGNRLSRQQMTNLRIYAGTEHP 131
>TIGR_CMR|CJE_1653 [details] [associations]
symbol:CJE_1653 "ribosomal protein L13" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B PIR:E81294
RefSeq:YP_179634.1 ProteinModelPortal:Q5HSV1 STRING:Q5HSV1
GeneID:3232281 KEGG:cjr:CJE1653 PATRIC:20045101
BioCyc:CJEJ195099:GJC0-1683-MONOMER Uniprot:Q5HSV1
Length = 141
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 46/118 (38%), Positives = 71/118 (60%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTG-RKLKNKV 76
W V DA+G+ GRL ++VAT+++GK+KP + PN D GD I++NA TG K ++K+
Sbjct: 14 WIVLDAEGKRFGRLLTEVATILRGKNKPCFTPNVDCGDYVIIINASKAVFTGANKAEDKL 73
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
Y+ H+GY G +K + +E++P + + AV MLP+ I+ GSEHP
Sbjct: 74 YHRHSGYFGSVKSEKFGDLLEKNPAKLYKLAVRGMLPKTNLGRAMLKKLKIYAGSEHP 131
>UNIPROTKB|Q9KUF1 [details] [associations]
symbol:rplM "50S ribosomal protein L13" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 47/116 (40%), Positives = 71/116 (61%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA+G+ LGRLAS++A+ ++GK K Y P+ D GD IV+NA+ + VTG K KNK+Y
Sbjct: 15 WYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNKMY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
+ H+ + G LK + ++ +ER P + AV MLP+ ++ G+EH
Sbjct: 75 HRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKGPLGRAMYRKLKVYAGAEH 130
>TIGR_CMR|VC_0570 [details] [associations]
symbol:VC_0570 "ribosomal protein L13" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 ProtClustDB:PRK09216
HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10 PIR:B82308
RefSeq:NP_230221.1 ProteinModelPortal:Q9KUF1 SMR:Q9KUF1
DNASU:2615247 GeneID:2615247 KEGG:vch:VC0570 PATRIC:20080256
Uniprot:Q9KUF1
Length = 142
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 47/116 (40%), Positives = 71/116 (61%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA+G+ LGRLAS++A+ ++GK K Y P+ D GD IV+NA+ + VTG K KNK+Y
Sbjct: 15 WYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDTGDYIIVVNAEKVTVTGNKAKNKMY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
+ H+ + G LK + ++ +ER P + AV MLP+ ++ G+EH
Sbjct: 75 HRHSEFPGGLKSFSFEKLIERKPEMVLELAVKGMLPKGPLGRAMYRKLKVYAGAEH 130
>TIGR_CMR|SO_3940 [details] [associations]
symbol:SO_3940 "ribosomal protein L13" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL HSSP:P0AA10
RefSeq:NP_719471.1 ProteinModelPortal:Q8EAG2 SMR:Q8EAG2
GeneID:1171578 KEGG:son:SO_3940 PATRIC:23527558 Uniprot:Q8EAG2
Length = 142
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 45/116 (38%), Positives = 68/116 (58%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA G+ LGR+A+++A ++GK KP Y P+ D GD IV+NA+ + VTG K + K Y
Sbjct: 15 WFVVDADGKTLGRIATEIALRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAQGKTY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
Y H+G+ G +K+ + ++ P I KAV MLP+ ++ G+EH
Sbjct: 75 YSHSGFPGGIKQISFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKLKVYAGAEH 130
>TIGR_CMR|CHY_2274 [details] [associations]
symbol:CHY_2274 "ribosomal protein L13" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_361083.1 ProteinModelPortal:Q3A9V1 SMR:Q3A9V1
STRING:Q3A9V1 GeneID:3726760 KEGG:chy:CHY_2274 PATRIC:21277619
BioCyc:CHYD246194:GJCN-2273-MONOMER Uniprot:Q3A9V1
Length = 143
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 46/118 (38%), Positives = 68/118 (57%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+W V DA G+ LGR+AS+ A +++GK KP + P+ D GD I++NA+ +TG+KL+ K+
Sbjct: 15 KWYVIDAAGKPLGRVASEAAKLLRGKHKPEFTPHVDTGDFVIIINAEKAVLTGKKLEKKM 74
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+Y H+ Y G LK M+ +P A KAV MLP N ++ G HP
Sbjct: 75 FYRHSRYPGGLKAIPYGILMKTNPVLAFEKAVKGMLPHNRLGRKLFKKLKVYAGESHP 132
>TIGR_CMR|NSE_0840 [details] [associations]
symbol:NSE_0840 "ribosomal protein L13" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC ProtClustDB:PRK09216 HAMAP:MF_01366_B
RefSeq:YP_506708.1 ProteinModelPortal:Q2GCT8 STRING:Q2GCT8
GeneID:3932168 KEGG:nse:NSE_0840 PATRIC:22681675
BioCyc:NSEN222891:GHFU-845-MONOMER Uniprot:Q2GCT8
Length = 152
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 50/127 (39%), Positives = 74/127 (58%)
Query: 8 LRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICV 67
L++ +E +W V DA V+GRLA+ V+T+++GK KPTY P+ D GD IV+NA +
Sbjct: 6 LKQAQIEK-QWIVVDATDAVVGRLAAFVSTILRGKTKPTYTPHMDCGDNVIVVNASKVKF 64
Query: 68 TGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXX 126
+G K+ +KVYY HTGY G +K T + + + P E ++ AV RML
Sbjct: 65 SGSKMSDKVYYRHTGYPGGIKSTTPAKILRGKKPCEVVKLAVKRMLDDGPMARRRLKNLY 124
Query: 127 IFPGSEH 133
++ G EH
Sbjct: 125 VYAGPEH 131
>TIGR_CMR|CPS_4443 [details] [associations]
symbol:CPS_4443 "ribosomal protein L13" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
ProtClustDB:PRK09216 HAMAP:MF_01366_B OMA:MLPKTRL
RefSeq:YP_271091.1 HSSP:P0AA10 ProteinModelPortal:Q47VT1 SMR:Q47VT1
STRING:Q47VT1 GeneID:3518471 KEGG:cps:CPS_4443 PATRIC:21471723
BioCyc:CPSY167879:GI48-4452-MONOMER Uniprot:Q47VT1
Length = 142
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 44/116 (37%), Positives = 70/116 (60%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + DA+ + LGR+A+++AT ++GK K Y P+ D GD +V+NA+ + VTG K K K+Y
Sbjct: 15 WFLVDAEDKTLGRIATEIATRLRGKHKAEYTPHVDTGDYIVVINAEKVRVTGNKAKGKIY 74
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 133
Y HT + G LK+ + ++ +E+ PT + AV MLP+ ++ G EH
Sbjct: 75 YSHTEFPGGLKQISFEKLIEKAPTRVLEFAVKGMLPKGPLGREMFRKLKVYAGPEH 130
>TIGR_CMR|APH_1108 [details] [associations]
symbol:APH_1108 "ribosomal protein L13" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 HOGENOM:HOG000225286 KO:K02871 TIGRFAMs:TIGR01066
RefSeq:YP_505656.1 ProteinModelPortal:Q2GIZ5 SMR:Q2GIZ5
STRING:Q2GIZ5 GeneID:3930273 KEGG:aph:APH_1108 PATRIC:20950974
OMA:YTPHMDC ProtClustDB:PRK09216
BioCyc:APHA212042:GHPM-1114-MONOMER HAMAP:MF_01366_B Uniprot:Q2GIZ5
Length = 158
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 48/118 (40%), Positives = 66/118 (55%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
RW + DA V+GRLA+ +AT+++GK KP Y P+ D GD +V+NA + T K+++KV
Sbjct: 14 RWVLIDASDMVVGRLAAYIATILRGKHKPEYTPHMDCGDNVVVVNASSVKFTRNKMRDKV 73
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRK-AVLRMLPRNXXXXXXXXXXXIFPGSEH 133
YY HTGY G LK T + + E I K AV RML ++ G EH
Sbjct: 74 YYRHTGYPGGLKSCTPNDMLRAGYAERIIKVAVWRMLGDGPLARRRFKNLKVYSGPEH 131
>CGD|CAL0004144 [details] [associations]
symbol:orf19.3348 species:5476 "Candida albicans" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 CGD:CAL0004144 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AACQ01000045 EMBL:AACQ01000042
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
RefSeq:XP_718171.1 RefSeq:XP_718438.1 ProteinModelPortal:Q5A8Y6
STRING:Q5A8Y6 GeneID:3639931 GeneID:3640222 KEGG:cal:CaO19.10856
KEGG:cal:CaO19.3348 Uniprot:Q5A8Y6
Length = 176
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 48/123 (39%), Positives = 67/123 (54%)
Query: 18 WRVFD--AKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNK 75
W D A + LGRLAS +A + GK KPTY PNRD GD +V N + VTG KLK K
Sbjct: 16 WHHVDVAADNRSLGRLASSIAITLMGKHKPTYTPNRDHGDYVVVTNCAHLKVTGNKLKEK 75
Query: 76 VYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
Y+ HT G L+ ++ ++ + E I++AV M+P+N +F G +HP
Sbjct: 76 TYWSHTTRPGTLRLVPMERMIDNKGYGEIIKRAVKGMIPKNKHRLVRMDRLKLFDGDDHP 135
Query: 135 FGD 137
+ D
Sbjct: 136 YKD 138
>ASPGD|ASPL0000005099 [details] [associations]
symbol:AN9469 species:162425 "Emericella nidulans"
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 GO:GO:0006412 EMBL:BN001301 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 OMA:YTPHMDC
HOGENOM:HOG000225288 EMBL:AACD01000194 RefSeq:XP_868851.1
ProteinModelPortal:Q5AQG1 STRING:Q5AQG1
EnsemblFungi:CADANIAT00007061 GeneID:3684066 KEGG:ani:AN9469.2
Uniprot:Q5AQG1
Length = 166
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 45/123 (36%), Positives = 66/123 (53%)
Query: 18 WRVFD--AKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNK 75
W + D + G+ LGRLAS +A ++ GK+KP Y P+ D GD + + D+ TG+K K
Sbjct: 16 WHLVDVGSDGRSLGRLASSIALILMGKNKPIYDPSTDCGDYVVAVGCHDLHTTGKKRFQK 75
Query: 76 VYYWHTGYIGHLKERTLKEQMER-DPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
YY HT G L+ T+ + E+ E +R+AV MLP+N F G +HP
Sbjct: 76 KYYTHTTRPGSLRSMTMDKMFEKWGGGEVLRRAVRGMLPKNRLRDKRLARLKTFEGVDHP 135
Query: 135 FGD 137
+ D
Sbjct: 136 YKD 138
>ZFIN|ZDB-GENE-050522-167 [details] [associations]
symbol:mrpl13 "mitochondrial ribosomal protein L13"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
ZFIN:ZDB-GENE-050522-167 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OrthoDB:EOG4Z8XXJ EMBL:BC095074
IPI:IPI00607407 RefSeq:NP_001018370.1 UniGene:Dr.82561
ProteinModelPortal:Q504D1 STRING:Q504D1 GeneID:553555
KEGG:dre:553555 InParanoid:Q504D1 NextBio:20880297 Uniprot:Q504D1
Length = 179
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 46/117 (39%), Positives = 61/117 (52%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + DA+ Q G++AS A +QGK KP Y P D GD +V+N K I +G K + KVY
Sbjct: 18 WFLIDARMQPPGKIASMCAVRLQGKHKPIYHPLSDIGDHVVVMNTKHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTG+ G K+ T + +D T I+ AV MLPRN +FP P
Sbjct: 78 SSHTGHPGSFKQVTAAQLHRKDSTAIIKLAVYGMLPRNLTRRTMMQRLHLFPDDVLP 134
>DICTYBASE|DDB_G0274959 [details] [associations]
symbol:mrpl13 "ribosomal protein L13, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023564 Pfam:PF00572
dictyBase:DDB_G0274959 GO:GO:0006412 EMBL:AAFI02000012
GO:GO:0005840 GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
HAMAP:MF_01366_B RefSeq:XP_644226.1 ProteinModelPortal:Q554U7
STRING:Q554U7 EnsemblProtists:DDB0217569 GeneID:8619655
KEGG:ddi:DDB_G0274959 InParanoid:Q554U7 OMA:HIIRHAV Uniprot:Q554U7
Length = 227
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 44/119 (36%), Positives = 67/119 (56%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPN--RDDGDMCIVLNAKDICVTGRKLKNK 75
W V DA G +GRLA++++ +++GK KP Y + + GD +VLNA + TG+K K
Sbjct: 16 WHVIDASGHRVGRLATKISELLRGKHKPIYDRSVPLECGDYVVVLNAHKVEFTGKKWDQK 75
Query: 76 VYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+Y H+GY G LKE K+ + +P IR AV+ M+P+N I+ G +P
Sbjct: 76 MYRKHSGYPGGLKETLAKDMLVENPEHIIRHAVMGMIPKNNSKFYLGKRLKIYDGIFNP 134
>SGD|S000005676 [details] [associations]
symbol:MRPL23 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IDA;IPI]
[GO:0003735 "structural constituent of ribosome"
evidence=IEA;IDA;IPI] [GO:0032543 "mitochondrial translation"
evidence=IC] [GO:0005840 "ribosome" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
SGD:S000005676 EMBL:BK006948 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 EMBL:U55020 eggNOG:COG0102 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066
OMA:YTPHMDC HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515
OrthoDB:EOG46T69R EMBL:Z75058 EMBL:AY558133 PIR:S67038
RefSeq:NP_014793.1 ProteinModelPortal:Q12487 SMR:Q12487
DIP:DIP-5385N IntAct:Q12487 MINT:MINT-502479 STRING:Q12487
PaxDb:Q12487 PeptideAtlas:Q12487 EnsemblFungi:YOR150W GeneID:854321
KEGG:sce:YOR150W CYGD:YOR150w NextBio:976357 Genevestigator:Q12487
GermOnline:YOR150W Uniprot:Q12487
Length = 163
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 43/111 (38%), Positives = 67/111 (60%)
Query: 26 QVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIG 85
+ LGRLAS +A + G+ KP Y P++D GD +V N + I VTG+K + K Y+ H+G G
Sbjct: 26 RTLGRLASAIAITLIGRHKPVYHPSQDCGDYVVVTNCQKIRVTGKKFEQKTYWSHSGRPG 85
Query: 86 HLKERTLKEQM-ERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF 135
LK +T+ + + ++ E ++KAV MLP+N +F GSE+P+
Sbjct: 86 QLKLQTMNKVVADKGFGEILKKAVSGMLPKNKLRKQRLDRLKVFDGSENPY 136
>TAIR|locus:2203010 [details] [associations]
symbol:emb1473 "embryo defective 1473" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005840 "ribosome" evidence=ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PROSITE:PS00783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412 GO:GO:0009941
GO:GO:0005840 GO:GO:0003735 GO:GO:0009579 EMBL:AC007260
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 EMBL:X87333 EMBL:AY063105 EMBL:AF370318
IPI:IPI00520181 PIR:A96815 RefSeq:NP_177984.1 UniGene:At.20962
HSSP:O59300 ProteinModelPortal:Q9SYL9 SMR:Q9SYL9 STRING:Q9SYL9
PaxDb:Q9SYL9 PRIDE:Q9SYL9 ProMEX:Q9SYL9 EnsemblPlants:AT1G78630.1
GeneID:844199 KEGG:ath:AT1G78630 GeneFarm:82 TAIR:At1g78630
HOGENOM:HOG000225286 InParanoid:Q9SYL9 KO:K02871 OMA:HVNTDKP
PhylomeDB:Q9SYL9 ProtClustDB:CLSN2679548 Genevestigator:Q9SYL9
GermOnline:AT1G78630 TIGRFAMs:TIGR01066 Uniprot:Q9SYL9
Length = 241
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 42/125 (33%), Positives = 67/125 (53%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA ++LGRLAS +A ++GK+ +Y P+ D G IV+NA+ + V+G+K K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF-G 136
H+G G + T + +R P + AV MLP+ ++ G +HP
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224
Query: 137 DRPLE 141
+PL+
Sbjct: 225 QKPLD 229
>UNIPROTKB|E2RT81 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 OMA:VQQWATF
EMBL:AAEX03008768 Ensembl:ENSCAFT00000001460 Uniprot:E2RT81
Length = 179
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 39/117 (33%), Positives = 60/117 (51%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G K+ T + ++DP ++ A+ MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIP 134
>UNIPROTKB|J9P023 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161
TIGRFAMs:TIGR01066 GeneTree:ENSGT00390000001515 EMBL:AAEX03008768
Ensembl:ENSCAFT00000045486 Uniprot:J9P023
Length = 178
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 39/117 (33%), Positives = 60/117 (51%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAAMASIKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G K+ T + ++DP ++ A+ MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFKQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIP 134
>UNIPROTKB|F1S286 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005761 "mitochondrial ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR005822
InterPro:IPR005823 InterPro:IPR023563 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0006412
GO:GO:0003735 GO:GO:0005761 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 CTD:28998
GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:CU302271
EMBL:CU468161 RefSeq:NP_001230344.1 UniGene:Ssc.20756
Ensembl:ENSSSCT00000006579 GeneID:100153348 KEGG:ssc:100153348
Uniprot:F1S286
Length = 178
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G ++ T + ++DP ++ A+ MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFRQVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIP 134
>UNIPROTKB|Q3SYS1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9913 "Bos taurus" [GO:0005761 "mitochondrial ribosome"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 GO:GO:0005761 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 PDB:2FTC PDBsum:2FTC
EMBL:BC103423 IPI:IPI00707300 RefSeq:NP_001029977.1
UniGene:Bt.49122 ProteinModelPortal:Q3SYS1 STRING:Q3SYS1
PRIDE:Q3SYS1 Ensembl:ENSBTAT00000008903 GeneID:617901
KEGG:bta:617901 CTD:28998 GeneTree:ENSGT00390000001515
HOVERGEN:HBG036111 InParanoid:Q3SYS1 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EvolutionaryTrace:Q3SYS1 NextBio:20900892 Uniprot:Q3SYS1
Length = 178
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 39/117 (33%), Positives = 59/117 (50%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAALASVRLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G K+ T + +DP ++ A+ MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFKQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTLMQRLHLFPDEDIP 134
>MGI|MGI:2137218 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005761 "mitochondrial ribosome" evidence=ISO] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=ISO] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
MGI:MGI:2137218 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111
OMA:VQQWATF OrthoDB:EOG4Z8XXJ EMBL:AB049641 EMBL:AK003283
EMBL:BC060968 IPI:IPI00134011 RefSeq:NP_081035.1 UniGene:Mm.236795
ProteinModelPortal:Q9D1P0 SMR:Q9D1P0 STRING:Q9D1P0
PhosphoSite:Q9D1P0 PaxDb:Q9D1P0 PRIDE:Q9D1P0
Ensembl:ENSMUST00000172387 GeneID:68537 KEGG:mmu:68537
UCSC:uc007vsf.1 InParanoid:Q9D1P0 NextBio:327412 Bgee:Q9D1P0
CleanEx:MM_MRPL13 Genevestigator:Q9D1P0
GermOnline:ENSMUSG00000022370 Uniprot:Q9D1P0
Length = 178
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 38/117 (32%), Positives = 59/117 (50%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA + +QG +KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAVIASNKLQGLNKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G ++ T + +DP ++ A+ MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFRQVTAAQLHRKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIP 134
>UNIPROTKB|Q9BYD1 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA;NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005761 "mitochondrial ribosome" evidence=IDA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
EMBL:AB049640 EMBL:CH471060 GO:GO:0006412 GO:GO:0005762
GO:GO:0003735 eggNOG:COG0102 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 KO:K02871 TIGRFAMs:TIGR01066 HOGENOM:HOG000225288
CTD:28998 HOVERGEN:HBG036111 OMA:VQQWATF OrthoDB:EOG4Z8XXJ
EMBL:AF112214 EMBL:AK311924 EMBL:BC009190 EMBL:BC021744
IPI:IPI00022403 RefSeq:NP_054797.2 UniGene:Hs.333823
ProteinModelPortal:Q9BYD1 SMR:Q9BYD1 IntAct:Q9BYD1 STRING:Q9BYD1
PhosphoSite:Q9BYD1 DMDM:22257023 PaxDb:Q9BYD1 PRIDE:Q9BYD1
DNASU:28998 Ensembl:ENST00000306185 GeneID:28998 KEGG:hsa:28998
UCSC:uc003ypa.3 GeneCards:GC08M121477 HGNC:HGNC:14278 MIM:610200
neXtProt:NX_Q9BYD1 PharmGKB:PA30942 InParanoid:Q9BYD1
PhylomeDB:Q9BYD1 GenomeRNAi:28998 NextBio:51932 ArrayExpress:Q9BYD1
Bgee:Q9BYD1 CleanEx:HS_MRPL13 Genevestigator:Q9BYD1
GermOnline:ENSG00000172172 Uniprot:Q9BYD1
Length = 178
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 39/117 (33%), Positives = 58/117 (49%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G ++ T + RDP ++ A+ MLP+N +FP P
Sbjct: 78 SSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIP 134
>RGD|1359587 [details] [associations]
symbol:Mrpl13 "mitochondrial ribosomal protein L13"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005761 "mitochondrial ribosome"
evidence=IEA;ISO] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 RGD:1359587 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:CH473950 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 HOGENOM:HOG000225288 CTD:28998
GeneTree:ENSGT00390000001515 HOVERGEN:HBG036111 OMA:VQQWATF
OrthoDB:EOG4Z8XXJ EMBL:BC084710 IPI:IPI00366411
RefSeq:NP_001006986.1 UniGene:Rn.107776 STRING:Q5XFW4
Ensembl:ENSRNOT00000005815 GeneID:299938 KEGG:rno:299938
UCSC:RGD:1359587 InParanoid:Q5XFW4 NextBio:646013
Genevestigator:Q5XFW4 Uniprot:Q5XFW4
Length = 178
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 38/117 (32%), Positives = 58/117 (49%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KVY
Sbjct: 18 WYLLDGKMQPPGKLAAIASNKLQGLHKPVYHQLSDCGDHVVIINTRHIAFSGNKWEQKVY 77
Query: 78 YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
HTGY G ++ T + +DP ++ A MLP+N +FP + P
Sbjct: 78 SSHTGYPGGFRQVTAAQLHLKDPVAIVKLATYGMLPKNLHRRTMMQRLHLFPDEDIP 134
>UNIPROTKB|K7GP19 [details] [associations]
symbol:MRPL13 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
GeneTree:ENSGT00390000001515 EMBL:CU302271 EMBL:CU468161
Ensembl:ENSSSCT00000034332 Uniprot:K7GP19
Length = 154
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/106 (32%), Positives = 55/106 (51%)
Query: 29 GRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLK 88
G+LA+ + +QG KP Y D GD +++N + I +G K + KVY HTGY G +
Sbjct: 5 GKLAAMASVKLQGLHKPVYHQLSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 89 ERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+ T + ++DP ++ A+ MLP+N +FP + P
Sbjct: 65 QVTAAQLHQKDPVAIVKLAIYGMLPKNLHRRTMMQRLHLFPDEDIP 110
>UNIPROTKB|E5RJI7 [details] [associations]
symbol:MRPL13 "39S ribosomal protein L13, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR005822 InterPro:IPR005823
InterPro:IPR023563 InterPro:IPR023564 Pfam:PF00572
PIRSF:PIRSF002181 PROSITE:PS00783 GO:GO:0005739 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AC107877 Gene3D:3.90.1180.10
PANTHER:PTHR11545 SUPFAM:SSF52161 TIGRFAMs:TIGR01066
HGNC:HGNC:14278 IPI:IPI01011492 ProteinModelPortal:E5RJI7
SMR:E5RJI7 Ensembl:ENST00000518918 ArrayExpress:E5RJI7 Bgee:E5RJI7
Uniprot:E5RJI7
Length = 148
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 35/106 (33%), Positives = 53/106 (50%)
Query: 29 GRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLK 88
G+LA+ + +QG KP Y D GD +++N + I +G K + KVY HTGY G +
Sbjct: 5 GKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFR 64
Query: 89 ERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+ T + RDP ++ A+ MLP+N +FP P
Sbjct: 65 QVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIP 110
>FB|FBgn0032720 [details] [associations]
symbol:mRpL13 "mitochondrial ribosomal protein L13"
species:7227 "Drosophila melanogaster" [GO:0006412 "translation"
evidence=ISS;NAS] [GO:0003735 "structural constituent of ribosome"
evidence=ISS;NAS] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=ISS;NAS] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783 EMBL:AE014134
GO:GO:0006412 GO:GO:0005762 GO:GO:0003735 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
CTD:28998 GeneTree:ENSGT00390000001515 OMA:VQQWATF EMBL:BT053702
RefSeq:NP_523598.2 UniGene:Dm.2753 ProteinModelPortal:Q9VJ38
SMR:Q9VJ38 STRING:Q9VJ38 PaxDb:Q9VJ38 EnsemblMetazoa:FBtr0089318
GeneID:35145 KEGG:dme:Dmel_CG10603 FlyBase:FBgn0032720
InParanoid:Q9VJ38 OrthoDB:EOG4WM39Z PhylomeDB:Q9VJ38
GenomeRNAi:35145 NextBio:792084 GermOnline:CG10603 Uniprot:Q9VJ38
Length = 178
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 37/118 (31%), Positives = 56/118 (47%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W ++D Q A V T + G KP Y P D GD +++N ++I + G + +VY
Sbjct: 17 WHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMNDCGDHVVLINTREIALPGDEWVKRVY 76
Query: 78 YWHTGYIGHLKERTLKEQM-ERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+ HTGY G TL Q+ E+DPT ++KAV + N +F + P
Sbjct: 77 FHHTGYPGGASW-TLAWQLHEKDPTMVMKKAVYNSMRGNLQRRHTMQRLHLFADDQVP 133
>GENEDB_PFALCIPARUM|PFB0645c [details] [associations]
symbol:PFB0645c "Ribosomal protein L13,
putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA + +G LA+ ++ ++QGK + Y PN+ + IV+NA + G K+Y
Sbjct: 66 WFVIDATNKSVGSLAACISKLLQGKYRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIY 125
Query: 78 YW-HTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+ + K + K R+P+ + AV RMLP N ++PG+ HP
Sbjct: 126 KFPRKSHSKSHKILSCKTVFARNPSMILNLAVKRMLPNNRLRQIFYRKLYVYPGALHP 183
>UNIPROTKB|O96222 [details] [associations]
symbol:PFB0645c "Mitochondrial large ribosomal subunit,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR005822 InterPro:IPR005823 InterPro:IPR023563
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 PROSITE:PS00783
GO:GO:0006412 GO:GO:0003735 EMBL:AE001362 GO:GO:0022625
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
TIGRFAMs:TIGR01066 PIR:F71609 RefSeq:XP_001349647.1
ProteinModelPortal:O96222 EnsemblProtists:PFB0645c:mRNA
GeneID:812729 KEGG:pfa:PFB0645c EuPathDB:PlasmoDB:PF3D7_0214200
HOGENOM:HOG000284339 OMA:IVVNAIH ProtClustDB:CLSZ2435818
Uniprot:O96222
Length = 212
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
W V DA + +G LA+ ++ ++QGK + Y PN+ + IV+NA + G K+Y
Sbjct: 66 WFVIDATNKSVGSLAACISKLLQGKYRVDYNPNKVNSSSVIVVNAIHVKFYGHTWDTKIY 125
Query: 78 YW-HTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
+ + K + K R+P+ + AV RMLP N ++PG+ HP
Sbjct: 126 KFPRKSHSKSHKILSCKTVFARNPSMILNLAVKRMLPNNRLRQIFYRKLYVYPGALHP 183
>UNIPROTKB|F1LYZ7 [details] [associations]
symbol:F1LYZ7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005822
InterPro:IPR023564 Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:3.90.1180.10 PANTHER:PTHR11545
SUPFAM:SSF52161 IPI:IPI00769027 Ensembl:ENSRNOT00000061678
Uniprot:F1LYZ7
Length = 172
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 29/118 (24%), Positives = 51/118 (43%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+W F +K G+LA+ + +G KP D GD ++++ + I +G K + KV
Sbjct: 10 QWATFASKCSPPGKLAAVASNKWKGLHKPVCHQLGDCGDHIVIISTRHIAFSGNKWEGKV 69
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 134
H GY G ++ ++ +DP ++ A LP +FP + P
Sbjct: 70 CSSHPGYPGGFRQAAAAQRHLKDPVAMVKLATCDTLPEILHRRTRMQRLHLFPDEDIP 127
>WB|WBGene00008769 [details] [associations]
symbol:mrpl-13 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR005822 InterPro:IPR023564
Pfam:PF00572 PIRSF:PIRSF002181 GO:GO:0009792 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:Z71259 eggNOG:COG0102
Gene3D:3.90.1180.10 PANTHER:PTHR11545 SUPFAM:SSF52161 KO:K02871
HOGENOM:HOG000225288 GeneTree:ENSGT00390000001515 OMA:VQQWATF
RefSeq:NP_492067.1 ProteinModelPortal:Q95QL2 SMR:Q95QL2
STRING:Q95QL2 PaxDb:Q95QL2 EnsemblMetazoa:F13G3.11.1
EnsemblMetazoa:F13G3.11.2 GeneID:172479 KEGG:cel:CELE_F13G3.11
UCSC:F13G3.11 CTD:172479 WormBase:F13G3.11 InParanoid:Q95QL2
NextBio:875685 Uniprot:Q95QL2
Length = 205
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/134 (27%), Positives = 57/134 (42%)
Query: 2 QKALAGLRRIN--LEGLR-WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCI 58
++A++ R+N L+ R W V DA Q L +VA + GK KP + P D GD +
Sbjct: 4 RRAVSRFDRVNQWLQFSRQWHVIDANQQDAELLGDKVARYLAGKHKPIFHPETDCGDHVV 63
Query: 59 VLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXX 118
V N KDI + K+ +Y ++ Y + + + D +V R L N
Sbjct: 64 VTNCKDIAMHAFDWKHTIYKFNMEYPKSKADIPAWQIHDYDQCRIAFLSVYRSLGNNLLR 123
Query: 119 XXXXXXXXIFPGSE 132
+FP E
Sbjct: 124 RRHIQRLHLFPDEE 137
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 191 164 0.00088 107 3 11 22 0.38 32
30 0.45 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 37
No. of states in DFA: 590 (63 KB)
Total size of DFA: 146 KB (2089 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.54u 0.13s 14.67t Elapsed: 00:00:01
Total cpu time: 14.55u 0.13s 14.68t Elapsed: 00:00:01
Start: Sat May 11 03:38:22 2013 End: Sat May 11 03:38:23 2013