Query 029588
Match_columns 191
No_of_seqs 146 out of 1092
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_N 50S ribosomal protein L 100.0 8.5E-62 2.9E-66 389.2 11.4 133 13-145 8-140 (140)
2 3r8s_J 50S ribosomal protein L 100.0 1.8E-61 6.2E-66 388.1 10.4 134 11-144 8-141 (142)
3 2ftc_H L13MT, MRP-L13, 39S rib 100.0 2.9E-61 1E-65 389.1 11.4 136 11-146 11-146 (148)
4 3f1f_N 50S ribosomal protein L 100.0 1.1E-60 3.9E-65 390.5 8.6 133 13-145 31-163 (163)
5 2zjr_G 50S ribosomal protein L 100.0 1.4E-59 4.7E-64 387.6 12.6 132 14-145 37-168 (174)
6 3bbo_L Ribosomal protein L13; 100.0 3.3E-57 1.1E-61 389.5 8.3 132 14-145 110-241 (250)
7 1j3a_A 50S ribosomal protein L 100.0 3.1E-49 1.1E-53 316.9 3.7 133 18-168 1-135 (142)
8 4b6a_O 60S ribosomal protein L 100.0 6.8E-49 2.3E-53 329.8 3.7 136 15-165 3-139 (199)
9 1vq8_J 50S ribosomal protein L 100.0 1.5E-46 5.3E-51 302.4 3.8 131 14-168 5-136 (145)
10 4a17_I RPL13A, 60S ribosomal p 100.0 1E-46 3.4E-51 316.5 2.7 136 16-166 3-139 (198)
11 3iz5_K 60S ribosomal protein L 100.0 2.6E-45 8.8E-50 309.5 1.7 136 13-165 6-144 (206)
12 2zkr_j 60S ribosomal protein L 100.0 1.3E-44 4.3E-49 304.7 3.2 128 15-166 3-140 (203)
13 3jyw_M 60S ribosomal protein L 100.0 2.5E-44 8.7E-49 297.7 2.2 132 19-167 1-135 (178)
14 3koj_A Uncharacterized protein 40.8 15 0.00052 27.2 2.3 30 16-61 52-81 (108)
15 3jv7_A ADH-A; dehydrogenase, n 38.8 41 0.0014 28.0 5.0 44 4-61 158-203 (345)
16 3two_A Mannitol dehydrogenase; 38.2 41 0.0014 28.1 4.9 34 5-39 166-199 (348)
17 1h2b_A Alcohol dehydrogenase; 35.7 43 0.0015 28.2 4.7 34 6-40 175-210 (359)
18 2h6e_A ADH-4, D-arabinose 1-de 33.5 47 0.0016 27.6 4.5 27 12-40 168-194 (344)
19 3s2e_A Zinc-containing alcohol 31.4 78 0.0027 26.2 5.5 33 5-38 156-188 (340)
20 3stb_C RNA-editing complex pro 29.2 50 0.0017 26.1 3.7 32 15-61 84-115 (148)
21 1jvb_A NAD(H)-dependent alcoho 28.2 75 0.0025 26.4 4.9 35 5-39 160-194 (347)
22 4dam_A Single-stranded DNA-bin 27.9 32 0.0011 25.9 2.3 29 17-61 63-91 (128)
23 3vdy_A SSB, single-stranded DN 27.5 34 0.0012 24.8 2.3 23 27-61 56-78 (116)
24 4ej6_A Putative zinc-binding d 27.1 72 0.0025 27.0 4.7 33 5-38 172-204 (370)
25 1e3j_A NADP(H)-dependent ketos 26.1 82 0.0028 26.2 4.8 32 6-38 159-190 (352)
26 1rjw_A ADH-HT, alcohol dehydro 24.9 97 0.0033 25.7 5.0 33 5-38 154-186 (339)
27 3ulp_A Single-strand binding p 24.3 40 0.0014 24.8 2.2 29 17-61 54-83 (124)
28 2vw9_A Single-stranded DNA bin 24.0 46 0.0016 25.0 2.6 22 27-60 55-76 (134)
29 1z9f_A Single-strand binding p 22.9 49 0.0017 25.7 2.6 29 17-61 63-91 (153)
30 2ee9_A Filamin-B; beta-sandwic 22.9 23 0.0008 25.5 0.7 41 41-82 54-94 (95)
31 1pl8_A Human sorbitol dehydrog 22.8 96 0.0033 25.9 4.6 32 6-38 162-193 (356)
32 2khr_A Protein MBTH; sideropho 22.8 59 0.002 22.9 2.7 17 48-64 7-24 (74)
33 1eqq_A Single stranded DNA bin 22.7 45 0.0015 26.5 2.4 27 18-60 55-81 (178)
34 1qvc_A Single stranded DNA bin 22.3 51 0.0018 25.1 2.6 28 17-60 53-80 (145)
35 4dvj_A Putative zinc-dependent 22.2 1.1E+02 0.0037 25.8 4.9 35 15-62 171-205 (363)
36 1uuf_A YAHK, zinc-type alcohol 21.9 1.2E+02 0.0041 25.7 5.1 34 5-39 184-217 (369)
37 3afp_A Single-stranded DNA-bin 21.9 52 0.0018 25.8 2.6 29 17-61 53-81 (168)
38 3tqy_A Single-stranded DNA-bin 21.5 49 0.0017 25.7 2.3 23 27-61 62-84 (158)
39 1txy_A Primosomal replication 20.3 34 0.0012 24.5 1.1 22 27-60 54-75 (104)
40 2g1u_A Hypothetical protein TM 20.1 1.4E+02 0.0047 21.6 4.5 37 10-62 14-50 (155)
41 1tul_A TLP20; telokin-like pro 20.1 45 0.0015 25.2 1.7 14 51-64 64-77 (108)
No 1
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=100.00 E-value=8.5e-62 Score=389.22 Aligned_cols=133 Identities=36% Similarity=0.668 Sum_probs=129.5
Q ss_pred cCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccc
Q 029588 13 LEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTL 92 (191)
Q Consensus 13 ~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~ 92 (191)
..+++|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|.|||++|++|.||+|||||||++++++
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~ 87 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL 87 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEH
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccH
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 029588 93 KEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 145 (191)
Q Consensus 93 ~~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~ 145 (191)
+++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+++++
T Consensus 88 ~~~~~r~P~~ii~~aVrGMLPk~~lgr~~l~rLkVy~G~~hph~aq~p~~~~~ 140 (140)
T 3v2d_N 88 EKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 140 (140)
T ss_dssp HHHHHHCTHHHHHHHHHHTSCSSHHHHHHHHTEEECSSSCCSCGGGCCEEECC
T ss_pred HHhhhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEeCCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999987763
No 2
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=100.00 E-value=1.8e-61 Score=388.07 Aligned_cols=134 Identities=41% Similarity=0.656 Sum_probs=129.9
Q ss_pred cccCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceec
Q 029588 11 INLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKER 90 (191)
Q Consensus 11 ~~~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~ 90 (191)
-...+++|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|.|||++|++|.||+|||||||++++
T Consensus 8 ~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~~ 87 (142)
T 3r8s_J 8 PETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQA 87 (142)
T ss_dssp TTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEECC
T ss_pred hhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCcccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCccee
Q 029588 91 TLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYV 144 (191)
Q Consensus 91 ~~~~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~ 144 (191)
+++++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|++++
T Consensus 88 ~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hph~aq~p~~l~ 141 (142)
T 3r8s_J 88 TFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLD 141 (142)
T ss_dssp BHHHHHHHCSHHHHHHHHHHHSCSSHHHHHHHTTEEECSSSCCSCGGGCCEECC
T ss_pred CHHHHHhhCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecC
Confidence 999999999999999999999999999999999999999999999999998765
No 3
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.9e-61 Score=389.14 Aligned_cols=136 Identities=31% Similarity=0.459 Sum_probs=131.9
Q ss_pred cccCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceec
Q 029588 11 INLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKER 90 (191)
Q Consensus 11 ~~~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~ 90 (191)
+.+++++|+||||+||+||||||.||++|+|||||+|||++||||+|||||||+|.|||+||++|.||+|||||||++++
T Consensus 11 ~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~htg~pGg~k~~ 90 (148)
T 2ftc_H 11 WATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSHTGYPGGFRQV 90 (148)
T ss_pred hhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeeeeCCcCCceec
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceecC
Q 029588 91 TLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMP 146 (191)
Q Consensus 91 ~~~~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~p 146 (191)
+++++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+.++++
T Consensus 91 ~~~~~~~r~P~~ii~~aVrGMLPkn~lgr~~l~rLkVy~G~~hP~~aq~p~~~~i~ 146 (148)
T 2ftc_H 91 TAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELP 146 (148)
T ss_pred cHHHHhhcCHHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCChHHhCCeeeccC
Confidence 99999999999999999999999999999999999999999999999999888764
No 4
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=100.00 E-value=1.1e-60 Score=390.54 Aligned_cols=133 Identities=36% Similarity=0.668 Sum_probs=128.5
Q ss_pred cCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccc
Q 029588 13 LEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTL 92 (191)
Q Consensus 13 ~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~ 92 (191)
..+++|+||||+||+||||||.||++|+|||||+||||+||||+|||||||+|.|||+||++|.||+|||||||++++++
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~ 110 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL 110 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEH
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeeh
Confidence 55799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 029588 93 KEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 145 (191)
Q Consensus 93 ~~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~ 145 (191)
+++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+|+++++
T Consensus 111 ~~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVY~G~~hPh~aQ~P~~l~~ 163 (163)
T 3f1f_N 111 EKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRPEKLEV 163 (163)
T ss_dssp HHHHHSSCHHHHHHHHHTTSCSSHHHHHHHHTCEECSSSCCCCCSCCCBCC--
T ss_pred HHhhhcCHHHHHHHHHHhcCCCChhHHHHHhCCEEECCCCCCcccCCCeecCC
Confidence 99999999999999999999999999999999999999999999999987763
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=100.00 E-value=1.4e-59 Score=387.64 Aligned_cols=132 Identities=36% Similarity=0.677 Sum_probs=129.4
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccch
Q 029588 14 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 93 (191)
Q Consensus 14 ~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~~ 93 (191)
.+++|+||||+||+||||||.||++|+|||||+||||+||||+|||||||+|.|||+||++|.||+|||||||+++++++
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~ 116 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAR 116 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEES
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 029588 94 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 145 (191)
Q Consensus 94 ~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~ 145 (191)
++++++|++||++||+||||+|.+|+.+|+||+||+|++|||++|+++++++
T Consensus 117 ~~~~r~P~~Ii~~AVrGMLPkn~lGr~~l~rLkVy~G~~hph~aqkp~~l~~ 168 (174)
T 2zjr_G 117 EALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPHSAQKPQVLKT 168 (174)
T ss_dssp TTTTSCHHHHHHHHHGGGSCCSHHHHHHHTTCEECSCSTGGGGSCCSCCCCC
T ss_pred HHhhcChHHHHHHHHHhcCCCChhHHHHHhCeEEECCCCCChhccCCeEEec
Confidence 9999999999999999999999999999999999999999999999988875
No 6
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=3.3e-57 Score=389.48 Aligned_cols=132 Identities=35% Similarity=0.592 Sum_probs=124.2
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccch
Q 029588 14 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 93 (191)
Q Consensus 14 ~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~~ 93 (191)
.+++||||||+||+||||||.||++|+|||||+||||+||||+|||||||+|.|||+||++|.||+|||||||+++++++
T Consensus 110 ~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK~~t~~ 189 (250)
T 3bbo_L 110 TDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLKEETFD 189 (250)
T ss_dssp --CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCCBCCHH
T ss_pred ccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEEecCcCCCcccccHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcChHHHHHHHHhccCCCCCchhhhhcCceecCCCCCCCCCCCCcceec
Q 029588 94 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVM 145 (191)
Q Consensus 94 ~~~~r~P~~Il~rAVrGMLPkn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~ 145 (191)
++++++|++||++||+||||+|.+|+.+|+||+||+|.+|||++|+++.+.+
T Consensus 190 ~l~~r~PerIi~kAVrGMLPkn~lGr~~lkrLkVY~G~~HPh~aQkp~~l~i 241 (250)
T 3bbo_L 190 QLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDLPL 241 (250)
T ss_dssp HHTTSCTTHHHHHHHHTTSCSSSSHHHHHTTCCCCSSSCCSCTTSCC-----
T ss_pred HhhhcChHHHHHHHHHhcCCCCchHHHHHhCcEEeCCCCCCHHHcCCeeech
Confidence 9999999999999999999999999999999999999999999999876553
No 7
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=100.00 E-value=3.1e-49 Score=316.91 Aligned_cols=133 Identities=26% Similarity=0.401 Sum_probs=109.7
Q ss_pred EEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCccee-ccchhhh
Q 029588 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKE-RTLKEQM 96 (191)
Q Consensus 18 W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~-~~~~~~~ 96 (191)
|+||||+||+||||||.||+.|+ |||+|||||||+|.|||+|+++|.||+|||||||+.. .+ ++++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999766 77 9999
Q ss_pred hcChHHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHHHHH
Q 029588 97 ERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 168 (191)
Q Consensus 97 ~r~P~~Il~rAVrGMLP-kn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~~ 168 (191)
+++|++||++||+|||| +|.+|+.+|+||+||+|+||||++|+++.+ |.+++ .|+. .|+||.+-.-+
T Consensus 68 ~r~P~~ii~~aVrGMLP~k~~lgr~~l~rLkVy~G~~hp~~aqkp~~~---~~a~~-~~~~-~~k~~~lg~ls 135 (142)
T 1j3a_A 68 PKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETI---VEAHV-SRLS-RPKYVTVGEVA 135 (142)
T ss_dssp CCSHHHHHHHHHHTTTTTTSHHHHHHHTTEEECSSCCGGGTTSCCBCC---GGGBG-GGSS-SCCEEEHHHHH
T ss_pred ccCHHHHHHHHHHhhccCCCHHHHHHHhCcEEeCCCCCCccccCcEec---cHHHh-hccC-CCCeEEHHHHH
Confidence 99999999999999999 788899999999999999999999998544 34555 5654 78888765433
No 8
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=100.00 E-value=6.8e-49 Score=329.83 Aligned_cols=136 Identities=26% Similarity=0.367 Sum_probs=128.2
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccchh
Q 029588 15 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKE 94 (191)
Q Consensus 15 ~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~~~ 94 (191)
+..|+||||+|++||||||.||+.|+ +||+|||||||+|.|||+++++|.||+|||||||++..++++
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 56899999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred hhhcChHHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHH
Q 029588 95 QMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQ 165 (191)
Q Consensus 95 ~~~r~P~~Il~rAVrGMLP-kn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~ 165 (191)
+++++|++||++||+|||| +|.+|+.+|++|+||+|+||||++|++ ++.|.+++++|+++.|.||++-
T Consensus 71 ~~~r~P~~il~~aVrGMLP~K~~lGr~~l~rLkVy~G~~hph~aqk~---~vvp~Al~~~~lkp~~Ky~~lg 139 (199)
T 4b6a_O 71 FHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKR---VVVPQALRVLRLKPGRKYTTLG 139 (199)
T ss_dssp CCCCSHHHHHHHHHHTTSCTTSHHHHHHHHTEEECSSCCSGGGGSCC---BBCGGGBHHHHSCTTCCEEEHH
T ss_pred HhhcCcHHHHHHHHhccCCCCChhhhHHHhccEEeCCCCCCcccCCC---EecchHHHhhccCCCCCeEEhh
Confidence 9999999999999999999 577888999999999999999999986 3578999999999999887543
No 9
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1.5e-46 Score=302.35 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=117.0
Q ss_pred CCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccch
Q 029588 14 EGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLK 93 (191)
Q Consensus 14 ~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~~ 93 (191)
+.++|+||||+||+||||||.||+.|+ |||+|||||||+|.|||+|+++|.||+||||||+ +++
T Consensus 5 ~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~~~ 68 (145)
T 1vq8_J 5 EFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----DNG 68 (145)
T ss_dssp CCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----SSC
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----CHH
Confidence 557899999999999999999999999 9999999999999999999999999999999998 889
Q ss_pred hhhhcChHHHHHHHHhccCC-CCCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHHHHH
Q 029588 94 EQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 168 (191)
Q Consensus 94 ~~~~r~P~~Il~rAVrGMLP-kn~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~~ 168 (191)
++++++|++||++||+|||| +|++|+.+|+||+||+|+||| |++ .++| .+.+ .|+. .|+||.+-.-+
T Consensus 69 ~~~~r~P~~i~~~aVrGMLP~K~~lgr~~l~rLkVy~G~~~p---~k~--~vv~-~a~~-~~l~-~~k~~~lg~ls 136 (145)
T 1vq8_J 69 YFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYD---EDG--EVLD-GTSL-DRLS-NIKFVTLGEIS 136 (145)
T ss_dssp CCCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSS---SCC--BCCT-TCBC-CTTS-CCSEEEHHHHH
T ss_pred HHhhcChHHHHHHHHHhhcCCCCHHHHHHHhCeEEECCCCCC---CCc--eeee-hhhh-hccC-CCCeEEHHHHH
Confidence 99999999999999999999 888899999999999999999 543 4444 4454 5664 88888765443
No 10
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=100.00 E-value=1e-46 Score=316.49 Aligned_cols=136 Identities=26% Similarity=0.311 Sum_probs=126.6
Q ss_pred ceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceeccchhh
Q 029588 16 LRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQ 95 (191)
Q Consensus 16 r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~~~~~~ 95 (191)
++|+||||+||+||||||.||+.|+ |||+|||||||+|.|||++|++|.||+|+.++++....+.+++
T Consensus 3 ~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~~ 70 (198)
T 4a17_I 3 DKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGVQ 70 (198)
T ss_dssp SSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSCC
T ss_pred ccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCccccc
Confidence 6899999999999999999999999 9999999999999999999999999999988988887788999
Q ss_pred hhcChHHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHHH
Q 029588 96 MERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQK 166 (191)
Q Consensus 96 ~~r~P~~Il~rAVrGMLPk-n~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~ 166 (191)
++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+. ...|.+++++|+.+.|.||.+-.
T Consensus 71 ~~r~P~rIi~~AVrGMLPkK~~lGr~~l~rLkVy~G~~hph~aqk~---~vvp~al~v~rl~~~rk~~~lg~ 139 (198)
T 4a17_I 71 HFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKK---QVVVDALKVQRLRNSRPVCKLGD 139 (198)
T ss_dssp CCCSHHHHHHHHHHTTTTTTSHHHHHHHHHCEECSSCCGGGTTSCC---BCCGGGBHHHHSCTTSCEEEHHH
T ss_pred cccCHHHHHHHHHhccCCCCChhHHHHHhCcEEecCCCCChhhccc---cccchHhhhhhcCCCCCeEEHHH
Confidence 9999999999999999996 77888999999999999999999975 34889999999999998885543
No 11
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=100.00 E-value=2.6e-45 Score=309.48 Aligned_cols=136 Identities=21% Similarity=0.359 Sum_probs=121.1
Q ss_pred cCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcceec--
Q 029588 13 LEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKER-- 90 (191)
Q Consensus 13 ~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypgglk~~-- 90 (191)
-..++|+||||+||+||||||.||+.|+ |||+|||||||+|.|||++|++|.||+| |++.....
T Consensus 6 ~f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~np 71 (206)
T 3iz5_K 6 GVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNTKP 71 (206)
T ss_dssp SCCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCSCS
T ss_pred ccceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecCCC
Confidence 4578999999999999999999999999 9999999999999999999999999988 65433222
Q ss_pred cchhhhhcChHHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHH
Q 029588 91 TLKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQ 165 (191)
Q Consensus 91 ~~~~~~~r~P~~Il~rAVrGMLPk-n~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~ 165 (191)
+++++++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+. .+.|.++++.|+.|.|.||.+-
T Consensus 72 ~~~~~~~r~P~~Il~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqk~---~vvP~al~v~~l~p~rk~~~lg 144 (206)
T 3iz5_K 72 SHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKR---MVIPDALKVLRLQPGHRYCLLG 144 (206)
T ss_dssp SSCSCCCCSHHHHHHHHHHHHSCTTSHHHHHHHTTEEEESSCCTTCCSCCB---CCTTTBCBTTBCSSSSCEEEHH
T ss_pred cccchhhcCHHHHHHHHHhccCCCCChhHHHHHhCCEEeCCCCCChhhccc---ccCchHHhhhhcCCCCCeEEHH
Confidence 468999999999999999999998 67788999999999999999999974 3478999999999999888543
No 12
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-44 Score=304.74 Aligned_cols=128 Identities=26% Similarity=0.414 Sum_probs=112.9
Q ss_pred CceEEEEeCCCCcchhhHHHHHH-HHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEe-eec-------ccCC
Q 029588 15 GLRWRVFDAKGQVLGRLASQVAT-VVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYY-WHT-------GYIG 85 (191)
Q Consensus 15 ~r~W~vIDA~gqiLGRLAS~VAk-~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~-~hs-------gypg 85 (191)
+++|+||||+||+||||||.||+ +|+ ||+|||||||+|.|||++|++|.|| +|+ +|||
T Consensus 3 ~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~G 69 (203)
T 2zkr_j 3 EVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSRG 69 (203)
T ss_dssp ----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCCC
Confidence 57899999999999999999999 666 7899999999999999999999999 998 6776
Q ss_pred cceeccchhhhhcChHHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHH
Q 029588 86 HLKERTLKEQMERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIRE 164 (191)
Q Consensus 86 glk~~~~~~~~~r~P~~Il~rAVrGMLPk-n~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~ 164 (191)
+ +++++|++||++||+||||+ |.+|+.+|+||+||+|+||||++|+|+ +.|.+++++|+++.|.||.+
T Consensus 70 ~--------~~~r~P~~I~~~AVrGMLPkk~~lGr~~l~rLkVy~G~~hp~~aqkp~---vvp~a~~v~~~~~~~ky~~l 138 (203)
T 2zkr_j 70 P--------YDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRM---VVPAALKVVRLKPTRKFAYL 138 (203)
T ss_dssp C--------CCCCSHHHHHHHHHHHHSCTTSHHHHHHHHTEEECSCSSCSSSSCCBC---CGGGBCCSSSSSCCSCEEEH
T ss_pred c--------cccCChHHHHHHHHHhhCCCCChhHHHHHhCcEEeCCCCCchhhcCCc---ccchhhhhhhcCCCCceEEH
Confidence 6 68899999999999999999 678889999999999999999999873 35789999999999998865
Q ss_pred HH
Q 029588 165 QK 166 (191)
Q Consensus 165 ~~ 166 (191)
-.
T Consensus 139 g~ 140 (203)
T 2zkr_j 139 GR 140 (203)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 13
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=2.5e-44 Score=297.73 Aligned_cols=132 Identities=26% Similarity=0.412 Sum_probs=118.8
Q ss_pred EEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecccCCcc--eeccchhhh
Q 029588 19 RVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHL--KERTLKEQM 96 (191)
Q Consensus 19 ~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsgypggl--k~~~~~~~~ 96 (191)
+||||+||+||||||+||++|+ |||+|||||||+|.|||+||++|.||+| |++.. ...+.++++
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h--~l~~~~~~~~~~~~~~ 66 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHD--FLRKATAFNKTRGPFH 66 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSS--SSSSTTSCCCSSSCCC
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheec--cCcccccCCccccccc
Confidence 5899999999999999999999 9999999999999999999999999999 54433 233568999
Q ss_pred hcChHHHHHHHHhccCCC-CCchhhhhcCceecCCCCCCCCCCCCcceecCCcchhccccccchhHHHHHHH
Q 029588 97 ERDPTEAIRKAVLRMLPR-NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKK 167 (191)
Q Consensus 97 ~r~P~~Il~rAVrGMLPk-n~~r~~~l~rLkvy~G~~hp~~~qk~~~~~~pp~~~r~~r~~~~r~~~~~~~~ 167 (191)
+++|++||++||+||||+ |.+|+.+|+||+||+|.||||++|+++ +.|.+++++|+++.|+||.+..-
T Consensus 67 ~r~P~~Il~~AVrGMLP~K~~lGr~~l~rLkVy~G~~hp~~aqk~~---vvp~Alrv~RLkp~rKy~tLGel 135 (178)
T 3jyw_M 67 FRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRV---VVPQALRVLRLKPGRKYTTLGKL 135 (178)
T ss_dssp CSSTTTHHHHHTTSSSCSSSHHHHHHHHHCCEESSCCCCSCCSCSS---SCCSSCCCCCSSSCSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhhcccHhHHHHHhCCeeeCCCCCchhhcccc---cCchHhhhhccCCCCceEEcchh
Confidence 999999999999999995 778889999999999999999999863 47889999999999999987654
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=40.80 E-value=15 Score=27.20 Aligned_cols=30 Identities=10% Similarity=0.040 Sum_probs=23.5
Q ss_pred ceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 16 LRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 16 r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
-.|+=+-+ .|++|..++++|. .||.|+|--
T Consensus 52 t~fi~vv~----wgk~AE~~~~yl~------------KG~~V~VeG 81 (108)
T 3koj_A 52 PARLKVVG----WGAVAQELQDRCR------------LNDEVVLEG 81 (108)
T ss_dssp CEEEEEEE----ETHHHHHHHHHCC------------TTCEEEEEE
T ss_pred cEEEEEEE----EhHHHHHHHHhCC------------CCCEEEEEE
Confidence 34665554 5799999999999 899998753
No 15
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=38.83 E-value=41 Score=27.99 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=31.8
Q ss_pred hhhhhccc--ccCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 4 ALAGLRRI--NLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 4 ~~~~~~~~--~~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
|..++... .....++++|-+.| .+|.+|.++|+.+- |..||++-
T Consensus 158 a~~~l~~~~~~~~~g~~vlv~GaG-~vG~~a~qla~~~g-------------~~~Vi~~~ 203 (345)
T 3jv7_A 158 PYHAISRVLPLLGPGSTAVVIGVG-GLGHVGIQILRAVS-------------AARVIAVD 203 (345)
T ss_dssp HHHHHHTTGGGCCTTCEEEEECCS-HHHHHHHHHHHHHC-------------CCEEEEEE
T ss_pred HHHHHHHhccCCCCCCEEEEECCC-HHHHHHHHHHHHcC-------------CCEEEEEc
Confidence 34455553 56667888888875 78999999999764 55777773
No 16
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=38.21 E-value=41 Score=28.08 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=26.7
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 39 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~L 39 (191)
..++.+.+....++++|-+.| .+|.+|.++|+.+
T Consensus 166 ~~~l~~~~~~~g~~VlV~GaG-~vG~~a~qla~~~ 199 (348)
T 3two_A 166 YSPLKFSKVTKGTKVGVAGFG-GLGSMAVKYAVAM 199 (348)
T ss_dssp HHHHHHTTCCTTCEEEEESCS-HHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCEEEEECCc-HHHHHHHHHHHHC
Confidence 445666677778899998875 8999999999853
No 17
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=35.73 E-value=43 Score=28.19 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.3
Q ss_pred hhhcc--cccCCceEEEEeCCCCcchhhHHHHHHHHh
Q 029588 6 AGLRR--INLEGLRWRVFDAKGQVLGRLASQVATVVQ 40 (191)
Q Consensus 6 ~~~~~--~~~~~r~W~vIDA~gqiLGRLAS~VAk~L~ 40 (191)
.++.. .+....++++|-+-| .+|.+|.++|+.+.
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG-~vG~~avqlak~~~ 210 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVG-GLGHIAVQLLKVMT 210 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCS-HHHHHHHHHHHHHC
T ss_pred HHHHhhccCCCCCCEEEEECCC-HHHHHHHHHHHHcC
Confidence 34444 456666788888777 89999999999763
No 18
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=33.45 E-value=47 Score=27.64 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=21.0
Q ss_pred ccCCceEEEEeCCCCcchhhHHHHHHHHh
Q 029588 12 NLEGLRWRVFDAKGQVLGRLASQVATVVQ 40 (191)
Q Consensus 12 ~~~~r~W~vIDA~gqiLGRLAS~VAk~L~ 40 (191)
+. ..++++|-+-| .+|.+|.++|+.+.
T Consensus 168 ~~-~g~~VlV~GaG-~vG~~aiqlak~~~ 194 (344)
T 2h6e_A 168 KF-AEPVVIVNGIG-GLAVYTIQILKALM 194 (344)
T ss_dssp TC-SSCEEEEECCS-HHHHHHHHHHHHHC
T ss_pred CC-CCCEEEEECCC-HHHHHHHHHHHHhc
Confidence 45 55677777666 99999999999763
No 19
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=31.39 E-value=78 Score=26.18 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=25.5
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 38 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~ 38 (191)
..++........++++|-+.| .+|.+|.++|+.
T Consensus 156 ~~~l~~~~~~~g~~VlV~GaG-~vG~~a~qla~~ 188 (340)
T 3s2e_A 156 YKGLKVTDTRPGQWVVISGIG-GLGHVAVQYARA 188 (340)
T ss_dssp HHHHHTTTCCTTSEEEEECCS-TTHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 445556667777889998876 589999999994
No 20
>3stb_C RNA-editing complex protein MP42; editosome, nanobody, single domain antibody, VH krepa3, krepa6, RNA binding protein-immune system complex; 2.50A {Trypanosoma brucei}
Probab=29.23 E-value=50 Score=26.10 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=27.5
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 15 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 15 ~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
...|+-|=+-| |.||..|.++|. .|+.|+|.-
T Consensus 84 ~tdf~~V~vfG---g~lAE~i~~ylk------------kG~rVlVeG 115 (148)
T 3stb_C 84 DKDFHTVRVFD---SDYSSRVKEQLR------------DGEWFLVTG 115 (148)
T ss_dssp SEEEEEEEECS---HHHHHHHHHHCC------------TTCEEEEEE
T ss_pred ccceEEEEEEC---ChHHHHHHHHhc------------CCCEEEEEE
Confidence 45688888877 899999999999 999998753
No 21
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*
Probab=28.24 E-value=75 Score=26.43 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=27.6
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 39 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~L 39 (191)
..++.+.+....++++|-+-+--+|.++.++|+.+
T Consensus 160 ~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~ 194 (347)
T 1jvb_A 160 YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAV 194 (347)
T ss_dssp HHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHc
Confidence 34455556667789999988889999999999865
No 22
>4dam_A Single-stranded DNA-binding protein 1; OB-fold; 1.70A {Streptomyces coelicolor}
Probab=27.88 E-value=32 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=22.7
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 17 ~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
.|+=|-| .|++|..++++|. .||.|+|.-
T Consensus 63 ~w~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (128)
T 4dam_A 63 NFFTVWA----NRQLATNASGSLA------------VGDPVVVQG 91 (128)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EcHHHHHHHHhcC------------CCCEEEEEE
Confidence 3555544 5789999999999 899998753
No 23
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=27.49 E-value=34 Score=24.80 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.4
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 27 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 27 iLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
+.|++|..++.+|. .||.|+|.-
T Consensus 56 ~wg~~Ae~~~~~l~------------KG~~V~V~G 78 (116)
T 3vdy_A 56 LWRKTAENTALYCQ------------KGSLVGVSG 78 (116)
T ss_dssp EEHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EECHHHHHHHHhCC------------CCCEEEEEE
Confidence 46889999999998 899988753
No 24
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=27.12 E-value=72 Score=27.04 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=25.8
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 38 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~ 38 (191)
+.++........+|++|-+.| .+|.+|.++|+.
T Consensus 172 ~~~l~~~~~~~g~~VlV~GaG-~vG~~aiqlak~ 204 (370)
T 4ej6_A 172 LHGVDLSGIKAGSTVAILGGG-VIGLLTVQLARL 204 (370)
T ss_dssp HHHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 344556667777899998876 899999999994
No 25
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=26.12 E-value=82 Score=26.21 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=24.2
Q ss_pred hhhcccccCCceEEEEeCCCCcchhhHHHHHHH
Q 029588 6 AGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 38 (191)
Q Consensus 6 ~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~ 38 (191)
.++...+....++++|-+.| .+|.+|.++|+.
T Consensus 159 ~al~~~~~~~g~~VlV~GaG-~vG~~a~qla~~ 190 (352)
T 1e3j_A 159 HACRRAGVQLGTTVLVIGAG-PIGLVSVLAAKA 190 (352)
T ss_dssp HHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 34455566667888888865 799999999984
No 26
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=24.93 E-value=97 Score=25.69 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=23.6
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 38 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~ 38 (191)
..++.+.+....++++|-+-|- +|.++.++|+.
T Consensus 154 ~~~l~~~~~~~g~~VlV~GaG~-vG~~~~~~a~~ 186 (339)
T 1rjw_A 154 YKALKVTGAKPGEWVAIYGIGG-LGHVAVQYAKA 186 (339)
T ss_dssp HHHHHHHTCCTTCEEEEECCST-THHHHHHHHHH
T ss_pred HHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHH
Confidence 3345455566667788776665 99999999984
No 27
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=24.27 E-value=40 Score=24.79 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=22.1
Q ss_pred eEEEEeCCCCcch-hhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 17 RWRVFDAKGQVLG-RLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 17 ~W~vIDA~gqiLG-RLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
.|+=|-| .| ++|..++++|. .||.|+|.-
T Consensus 54 ~~~~v~~----wg~~~Ae~~~~~l~------------KG~~V~V~G 83 (124)
T 3ulp_A 54 DWHRIVV----YDQNIVDLIDKYLR------------KGRRVYVQG 83 (124)
T ss_dssp EEEEEEE----CCHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----EEchHHHHHHhhcC------------CCCEEEEEE
Confidence 3554444 57 89999999998 899998753
No 28
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=23.96 E-value=46 Score=24.99 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 029588 27 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 60 (191)
Q Consensus 27 iLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVV 60 (191)
+.|++|..++++|. .||.|+|.
T Consensus 55 ~wg~~Ae~~~~~l~------------KG~~V~V~ 76 (134)
T 2vw9_A 55 LFGRTAEIANQYLS------------KGSSVLIE 76 (134)
T ss_dssp EEHHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEcHHHHHHHHhCC------------CCCEEEEE
Confidence 35899999999998 89888875
No 29
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=22.89 E-value=49 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 17 ~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
.|+=|-| .|++|..++++|. .|+.|+|.-
T Consensus 63 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 91 (153)
T 1z9f_A 63 DFFRIVT----FGRLAEFARTYLT------------KGRLVLVEG 91 (153)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ECHHHHHHHhhCC------------CCCEEEEEE
Confidence 3554444 5889999999999 899998853
No 30
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.88 E-value=23 Score=25.51 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEecccccccCccccceeEeeecc
Q 029588 41 GKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTG 82 (191)
Q Consensus 41 GKhKp~y~P~~d~Gd~VVVVNaekI~vTG~K~~~K~Y~~hsg 82 (191)
|-+...|+|.. .|+|.|-|......|.|..+.-.....++|
T Consensus 54 GtY~v~ytP~e-~G~h~v~V~~~G~~I~GSPF~v~V~~~~~g 94 (95)
T 2ee9_A 54 GTVTVRYAPTE-VGLHEMHIKYMGSHIPESPLQFYVNYPNSG 94 (95)
T ss_dssp SCEEEECCCCS-SEEEEEEEEESSCBCTTCSEEEEECCTTCC
T ss_pred CeEEEEEEecC-CEeEEEEEEECCEECCCCCeEEEEecccCC
Confidence 66777888865 599999998888888998877666544444
No 31
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.84 E-value=96 Score=25.91 Aligned_cols=32 Identities=19% Similarity=0.080 Sum_probs=24.5
Q ss_pred hhhcccccCCceEEEEeCCCCcchhhHHHHHHH
Q 029588 6 AGLRRINLEGLRWRVFDAKGQVLGRLASQVATV 38 (191)
Q Consensus 6 ~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~ 38 (191)
.++...+....++++|-+.| .+|.+|.++|+.
T Consensus 162 ~al~~~~~~~g~~VlV~GaG-~vG~~aiqlak~ 193 (356)
T 1pl8_A 162 HACRRGGVTLGHKVLVCGAG-PIGMVTLLVAKA 193 (356)
T ss_dssp HHHHHHTCCTTCEEEEECCS-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHH
Confidence 34455566677889998865 799999999984
No 32
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=22.79 E-value=59 Score=22.87 Aligned_cols=17 Identities=29% Similarity=0.667 Sum_probs=13.4
Q ss_pred CCCC-CCCCEEEEEeccc
Q 029588 48 APNR-DDGDMCIVLNAKD 64 (191)
Q Consensus 48 ~P~~-d~Gd~VVVVNaek 64 (191)
.|.. +.|.+.||||.|.
T Consensus 7 npfdd~~~~f~VlvN~E~ 24 (74)
T 2khr_A 7 NPFDDDNGAFFVLVNDED 24 (74)
T ss_dssp CCCSCCCSCEEEEEETTC
T ss_pred CCCCCCCCeEEEEEcCCC
Confidence 5655 4589999999876
No 33
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA complex, replication/RNA complex; HET: 5MU; 3.20A {Escherichia coli} SCOP: b.40.4.3
Probab=22.68 E-value=45 Score=26.51 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 029588 18 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 60 (191)
Q Consensus 18 W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVV 60 (191)
|+=|-+ .|++|..++++|. .||.|+|.
T Consensus 55 ~i~vv~----wg~~Ae~~~~~l~------------KG~~V~Ve 81 (178)
T 1eqq_A 55 WHRVVL----FGKLAEVASEYLR------------KGSQVYIE 81 (178)
T ss_dssp EEEEEE----CHHHHHHHHHHCC------------TTCEEEEC
T ss_pred EEEEEE----ccHHHHHHHHhcC------------CCCEEEEE
Confidence 554444 5789999999998 89988874
No 34
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=22.26 E-value=51 Score=25.05 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=21.8
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 029588 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 60 (191)
Q Consensus 17 ~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVV 60 (191)
.|+=|-+ .|++|..++++|. .||.|+|.
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~V~ 80 (145)
T 1qvc_A 53 EWHRVVL----FGKLAEVASEYLR------------KGSQVYIE 80 (145)
T ss_dssp EEEEEEE----ETHHHHHHHHHCC------------TTCEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhcC------------CCCEEEEE
Confidence 4655544 5679999999998 89998875
No 35
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=22.18 E-value=1.1e+02 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=26.8
Q ss_pred CceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEec
Q 029588 15 GLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNA 62 (191)
Q Consensus 15 ~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNa 62 (191)
..++++|-+-.-.+|.+|.++|+.+. |-.||++-.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-------------g~~Vi~~~~ 205 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRT-------------DLTVIATAS 205 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHC-------------CSEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhc-------------CCEEEEEeC
Confidence 56788888755589999999999776 456776654
No 36
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.91 E-value=1.2e+02 Score=25.68 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=25.0
Q ss_pred hhhhcccccCCceEEEEeCCCCcchhhHHHHHHHH
Q 029588 5 LAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVV 39 (191)
Q Consensus 5 ~~~~~~~~~~~r~W~vIDA~gqiLGRLAS~VAk~L 39 (191)
..++.+.+....++++|-+.| .+|.+|.++|+.+
T Consensus 184 ~~al~~~~~~~g~~VlV~GaG-~vG~~aiqlak~~ 217 (369)
T 1uuf_A 184 YSPLRHWQAGPGKKVGVVGIG-GLGHMGIKLAHAM 217 (369)
T ss_dssp HHHHHHTTCCTTCEEEEECCS-HHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCCEEEEECCC-HHHHHHHHHHHHC
Confidence 344555566667888888876 6999999999853
No 37
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=21.89 E-value=52 Score=25.80 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=22.4
Q ss_pred eEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 17 ~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
.|+=|-+ .|++|..++++|. .||.|+|.-
T Consensus 53 ~~~~v~~----wg~~Ae~~~~~l~------------KG~~V~VeG 81 (168)
T 3afp_A 53 LFLRCNI----WREAAENVAESLT------------RGARVIVTG 81 (168)
T ss_dssp EEEEEEE----EHHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEEEEEE----ehHHHHHHHHhCC------------CCCEEEEEE
Confidence 3554444 5889999999999 899998863
No 38
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=21.52 E-value=49 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.3
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEe
Q 029588 27 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLN 61 (191)
Q Consensus 27 iLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVN 61 (191)
+.|++|..++++|. .|+.|+|.-
T Consensus 62 ~wg~~Ae~~~~~l~------------KG~~V~VeG 84 (158)
T 3tqy_A 62 FFNRLAEIVGEYLR------------KGSKIYIEG 84 (158)
T ss_dssp EETHHHHHHHHHCC------------TTCEEEEEE
T ss_pred EEhHHHHHHHhhcC------------CCCEEEEEE
Confidence 36789999999998 899988753
No 39
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=20.27 E-value=34 Score=24.51 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=18.7
Q ss_pred cchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEE
Q 029588 27 VLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVL 60 (191)
Q Consensus 27 iLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVV 60 (191)
..|++|..++.+|. .|+.|.|-
T Consensus 54 ~~g~~Ae~~~~~l~------------KG~~V~V~ 75 (104)
T 1txy_A 54 VSGHENQAITHSIT------------VGSRITVQ 75 (104)
T ss_dssp EESSTTHHHHTTCC------------TTCEEEEE
T ss_pred EEhHHHHHHHhhCC------------CCCEEEEE
Confidence 56899999999988 89888775
No 40
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=20.11 E-value=1.4e+02 Score=21.64 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=25.4
Q ss_pred ccccCCceEEEEeCCCCcchhhHHHHHHHHhCCCCCCCCCCCCCCCEEEEEec
Q 029588 10 RINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNA 62 (191)
Q Consensus 10 ~~~~~~r~W~vIDA~gqiLGRLAS~VAk~L~GKhKp~y~P~~d~Gd~VVVVNa 62 (191)
.....+..++|| | .|.+++.+|..|.. .|..|+++.-
T Consensus 14 ~~~~~~~~v~Ii---G--~G~iG~~la~~L~~-----------~g~~V~vid~ 50 (155)
T 2g1u_A 14 SKKQKSKYIVIF---G--CGRLGSLIANLASS-----------SGHSVVVVDK 50 (155)
T ss_dssp ---CCCCEEEEE---C--CSHHHHHHHHHHHH-----------TTCEEEEEES
T ss_pred hcccCCCcEEEE---C--CCHHHHHHHHHHHh-----------CCCeEEEEEC
Confidence 445566778888 4 38999999988872 4778888854
No 41
>1tul_A TLP20; telokin-like protein; 2.20A {Autographa californica nucleopolyhedroorganism_taxid} SCOP: b.85.5.1
Probab=20.10 E-value=45 Score=25.20 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=11.7
Q ss_pred CCCCCEEEEEeccc
Q 029588 51 RDDGDMCIVLNAKD 64 (191)
Q Consensus 51 ~d~Gd~VVVVNaek 64 (191)
+.|||++|+.|+-.
T Consensus 64 v~cgdy~V~~N~~~ 77 (108)
T 1tul_A 64 VSCGNYGVLCNLVQ 77 (108)
T ss_dssp EESSSEEEEEECCS
T ss_pred EEcCCEEEEEEccc
Confidence 36899999999854
Done!