RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 029588
(191 letters)
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 148
Score = 175 bits (447), Expect = 4e-57
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
W + D K Q G+LA+ + +QG KP Y D GD +++N + I +G K + KV
Sbjct: 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKV 76
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
Y HTGY G ++ T + RDP ++ A+ MLP+N R +L +FP P
Sbjct: 77 YSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIP 134
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N
2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N
2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Length = 140
Score = 172 bits (439), Expect = 5e-56
Identities = 47/118 (39%), Positives = 77/118 (65%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
RW + DA+G+ LGRLA+++AT+++GK +P + PN GD +V+NA I VTG+KL+ K+
Sbjct: 12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
Y ++GY G LK+ L++ + P + AV MLP+ L ++L+++ G +HP
Sbjct: 72 YTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 129
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H
1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J
2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Length = 142
Score = 171 bits (437), Expect = 1e-55
Identities = 55/118 (46%), Positives = 74/118 (62%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
W V DA G+ LGRLA+++A ++GK K Y P+ D GD IVLNA + VTG K +KV
Sbjct: 14 DWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKV 73
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
YY HTG+IG +K+ T +E + R P I AV MLP+ L RKL+++ G+EH
Sbjct: 74 YYHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHN 131
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Length = 174
Score = 170 bits (433), Expect = 1e-54
Identities = 47/118 (39%), Positives = 70/118 (59%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
W V DA G LGRLA+ +A+ ++GK +P + PN GD +V+NA + +TG+KL +KV
Sbjct: 40 NWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKV 99
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
Y +TGY G LK T +E + + P I AV MLP+ + +L+++ G HP
Sbjct: 100 YTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHP 157
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 170 bits (432), Expect = 1e-54
Identities = 47/118 (39%), Positives = 77/118 (65%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
RW + DA+G+ LGRLA+++AT+++GK +P + PN GD +V+NA I VTG+KL+ K+
Sbjct: 35 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 94
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
Y ++GY G LK+ L++ + P + AV MLP+ L ++L+++ G +HP
Sbjct: 95 YTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHP 152
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 169 bits (430), Expect = 3e-53
Identities = 46/118 (38%), Positives = 69/118 (58%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+W V DA +LGR+AS +A ++GK+ +Y P+ D G IV+NA + V+G+K K+
Sbjct: 113 KWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKL 172
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
Y H+G G LKE T + +R P I AV MLP+ +L L+++ G+EHP
Sbjct: 173 YRRHSGRPGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHP 230
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly,
ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Length = 142
Score = 112 bits (283), Expect = 2e-32
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 16/139 (11%)
Query: 20 VFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYW 79
+ +A G +LGRLAS+VA ++ G+ +++NA+ +TG + Y
Sbjct: 3 IINADGLILGRLASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKYK 50
Query: 80 HTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDR 138
+ L + E +R+ + MLP + R+L+++ G F D+
Sbjct: 51 QRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDK 110
Query: 139 PLEPYVMPP-RRVRELRPR 156
+ + R RP+
Sbjct: 111 --QLETIVEAHVSRLSRPK 127
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M
1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I*
1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K*
1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Length = 145
Score = 110 bits (277), Expect = 2e-31
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+ DA+ ++GR+ASQVA DG+ V+NA+ +TGR+ +
Sbjct: 8 ADVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVE 55
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPF 135
Y IG+ + P ++ + MLP + + + +R++ G+ +
Sbjct: 56 KYEKRVDIGNDNGYFY----PKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDE 111
Query: 136 GDRPLEPY---VMPPRR 149
L+ + +
Sbjct: 112 DGEVLDGTSLDRLSNIK 128
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 100 bits (250), Expect = 4e-27
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 16/139 (11%)
Query: 20 VFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYW 79
V D KG ++GRLAS VA + +G +V+ A+++ ++G +NK+ Y
Sbjct: 2 VIDGKGHLVGRLASVVAKQL------------LNGQKIVVVRAEELNISGEFFRNKLKYH 49
Query: 80 HTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGDR 138
+T R P+ KA+ M+ + +L++F G P+ +
Sbjct: 50 DFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKK 109
Query: 139 PLEPYVMP-PRRVRELRPR 156
+ V+P RV L+P
Sbjct: 110 --KRVVVPQALRVLRLKPG 126
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 96.9 bits (241), Expect = 1e-25
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 15/131 (11%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+ V DAKG +LGRLAS VA + G +V+ + I ++G +N+V
Sbjct: 4 KLVVIDAKGHLLGRLASYVAKELLS------------GQRIVVVRTEAINISGSLFRNRV 51
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPF 135
+ Q R P+ +AV MLP + +L+IF G P+
Sbjct: 52 KFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPY 111
Query: 136 GDRPLEPYVMP 146
+ V+
Sbjct: 112 DRV--KKQVVV 120
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 96.2 bits (239), Expect = 2e-25
Identities = 30/174 (17%), Positives = 69/174 (39%), Gaps = 15/174 (8%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+ V DA+ +LGRLAS VA + G +V+ ++IC++G ++ K+
Sbjct: 10 KRVVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLVRQKM 57
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRD-RKLRIFPGSEHPF 135
Y + + R P + + + + M+P R + +L+ + G P+
Sbjct: 58 KYLRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPY 117
Query: 136 GDRPLE--PYVMPPRRVRELRPRVRRAMIREQKKAEMQQSNKDMRKNRKKEVEA 187
P + R++ + ++ + +++ + RK++ +
Sbjct: 118 DRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKV 171
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 93.9 bits (233), Expect = 2e-24
Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
V D KG ++GRLAS VA + G +V+ A+++ ++G +NK+
Sbjct: 5 PVVVIDGKGHLVGRLASVVAKQLLN------------GQKIVVVRAEELNISGEFFRNKL 52
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRD-RKLRIFPGSEHPF 135
Y +T R P+ KA+ M+ R +L++F G P+
Sbjct: 53 KYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPY 112
Query: 136 G--DRPLEPYVMPPRRVRELRPRVRRAMIREQ---KKAEMQQSNKDMRKNRKKE 184
R + P + R++ R + K ++ + RK E
Sbjct: 113 DKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAE 166
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 84.7 bits (209), Expect = 7e-21
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 13/141 (9%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
+ V D +G +LGRLA+ VA V G +V+ + I ++G +NK+
Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQV------------LLGRKVVVVRCEGINISGNFYRNKL 52
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPF 135
Y + R P+ + V MLP + K +L++F G P+
Sbjct: 53 NYLAFLRKRMNTNPSRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPY 112
Query: 136 GDRPLEPYVMPPRRVRELRPR 156
+ + VR R
Sbjct: 113 DKKKRMVVPAALKVVRLKPTR 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.001
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 77 YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVL--RMLPRNKLRDDRDRKLRIFPGSEHP 134
+Y H G+ HLK E ER R L R L K+R D GS
Sbjct: 473 FYSHIGH--HLKN---IEHPERM--TLFRMVFLDFRFL-EQKIR--HDSTAWNASGSILN 522
Query: 135 -FGD-RPLEPYV-----MPPRRVRELR---PRVRRAMIREQKKAEMQQS 173
+ +PY+ R V + P++ +I + ++ +
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Score = 28.3 bits (62), Expect = 2.2
Identities = 25/173 (14%), Positives = 47/173 (27%), Gaps = 74/173 (42%)
Query: 1 MQKALAGLRR---INLEGLRWRVFDAKG---QVLGRLASQVATVVQGKDKPTYAPNRDDG 54
+++AL LR + ++G+ G + A V
Sbjct: 140 LRQALLELRPAKNVLIDGV-------LGSGKTWV---ALDVC--------------LSYK 175
Query: 55 DMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPR 114
C K+ K++ W + + P + VL ML
Sbjct: 176 VQC-------------KMDFKIF-WLN--LKN----------CNSP-----ETVLEML-- 202
Query: 115 NKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKK 167
KL D S+H R+ ++ +RR + + +
Sbjct: 203 QKLLYQIDPNWT--SRSDHSSN---------IKLRIHSIQAELRRLLKSKPYE 244
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.97
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 26 QVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNA 62
Q L +L + + K YA D + + A
Sbjct: 20 QALKKLQASL--------KL-YAD---DSAPALAIKA 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 1.1
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 147 PRRVRELRPRVRRAMIREQKKAEMQQSNKDMRKNRKKEVE 186
P +R+ R +R + ++ A + ++ R+ KK++E
Sbjct: 84 PESIRKWREE-QRKRL-QELDAASKVMEQEWREKAKKDLE 121
Score = 27.8 bits (61), Expect = 1.9
Identities = 11/92 (11%), Positives = 34/92 (36%), Gaps = 16/92 (17%)
Query: 94 EQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVREL 153
+++ ++P E+IRK R + D + + + + ++ E
Sbjct: 78 DRLTQEP-ESIRKWREEQRKRLQELDAASKVME--------------QEWREKAKKDLEE 122
Query: 154 RPRVRRAMIREQKKAEMQQSNKDMRKNRKKEV 185
+ + + E+ K + ++K + ++
Sbjct: 123 WNQRQSEQV-EKNKINNRIADKAFYQQPDADI 153
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 28.7 bits (65), Expect = 1.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
RRV +R R+
Sbjct: 113 VRRVEHMRGRITE 125
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 28.4 bits (64), Expect = 1.4
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
RR LRPR R
Sbjct: 124 ARRAESLRPRARE 136
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 28.4 bits (64), Expect = 1.4
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
R V L P+V+
Sbjct: 107 SRFVVALEPKVQA 119
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 28.4 bits (64), Expect = 1.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
RR+ EL PR+
Sbjct: 108 VRRMNELEPRITE 120
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 28.3 bits (64), Expect = 1.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
RRV +RPRV +
Sbjct: 111 VRRVEAMRPRVEQ 123
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 28.4 bits (64), Expect = 1.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
RRV E++P+V
Sbjct: 118 ARRVLEMQPKVEE 130
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
RR+ LRPR+
Sbjct: 100 ARRMERLRPRIEE 112
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 28.4 bits (64), Expect = 1.6
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
RRV +RP V
Sbjct: 108 ARRVDAMRPAVEA 120
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 28.3 bits (64), Expect = 1.6
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
P V+ L+P ++R
Sbjct: 108 PEAVKNLQPYIQR 120
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 28.4 bits (64), Expect = 1.6
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
R V +R R R
Sbjct: 114 ARGVERVRERSRG 126
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 28.4 bits (64), Expect = 1.6
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
+ LRPR +
Sbjct: 117 VGATKRLRPRAQE 129
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 28.4 bits (64), Expect = 1.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
RRV LRPRV+
Sbjct: 133 MRRVELLRPRVQE 145
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 147 PRRVRELRPRVRR 159
RR++ LRP ++R
Sbjct: 108 VRRMQALRPNIQR 120
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 28.4 bits (64), Expect = 1.7
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 147 PRRVRELRPRVRR 159
P ++ LR
Sbjct: 120 PATMKRLRDGFAA 132
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 28.0 bits (63), Expect = 1.8
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
RR+R + P ++
Sbjct: 118 VRRIRRMEPAIQS 130
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 28.0 bits (63), Expect = 1.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
RRVR +RP V+
Sbjct: 120 VRRVRAMRPAVQA 132
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 28.0 bits (63), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
+R+ LRPR++
Sbjct: 116 VKRLAALRPRIQD 128
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 28.0 bits (63), Expect = 2.0
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
+R+ +RPR++
Sbjct: 115 VKRMNAIRPRLQS 127
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 28.0 bits (63), Expect = 2.0
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
R + LR ++R
Sbjct: 116 SRAIDLLRAEIQR 128
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 28.0 bits (63), Expect = 2.0
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
+R++ +RP V
Sbjct: 116 VKRIKGMRPEVEE 128
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 28.0 bits (63), Expect = 2.0
Identities = 2/13 (15%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
R+++ + P + +
Sbjct: 109 LRKMQRMAPYIEQ 121
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 28.0 bits (63), Expect = 2.0
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
P V LRPR+
Sbjct: 119 PSIVTGLRPRIAE 131
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 28.0 bits (63), Expect = 2.0
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
PRR+ ++P VR
Sbjct: 121 PRRITAVQPFVRS 133
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 28.0 bits (63), Expect = 2.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
PR + +L PR+R
Sbjct: 108 PRTISDLEPRIRD 120
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 28.0 bits (63), Expect = 2.2
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
+R+L ++R
Sbjct: 123 LAEIRKLEDQIRT 135
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 28.0 bits (63), Expect = 2.2
Identities = 3/13 (23%), Positives = 4/13 (30%)
Query: 147 PRRVRELRPRVRR 159
P+ V R
Sbjct: 100 PKLVDGWVRTTRE 112
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 27.6 bits (62), Expect = 2.4
Identities = 3/13 (23%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
V +L R++
Sbjct: 122 MPVVDKLENRIQE 134
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 27.6 bits (62), Expect = 2.4
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 147 PRRVRELRPRVRR 159
P ++R+
Sbjct: 105 PEATDLFTEQLRQ 117
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 27.6 bits (62), Expect = 2.5
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
PR ++ L P +
Sbjct: 118 PRVIKRLEPEITA 130
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 27.6 bits (62), Expect = 2.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 147 PRRVRELRPRVRR 159
PR+V + P VR+
Sbjct: 117 PRQVETVEPTVRK 129
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 27.5 bits (62), Expect = 2.5
Identities = 1/13 (7%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
P ++ + + +
Sbjct: 68 PSKINDYKDFIEE 80
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 27.7 bits (62), Expect = 2.7
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
++R++ +VR
Sbjct: 122 LAKIRKVEDKVRE 134
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 27.7 bits (62), Expect = 2.8
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
+ L P +++
Sbjct: 134 GDALDHLSPLIKQ 146
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 27.6 bits (62), Expect = 2.9
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
P +R L P +
Sbjct: 100 PSALRRLEPVIAG 112
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 27.2 bits (61), Expect = 3.4
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 147 PRRVRELRPRVRR 159
PR +P +
Sbjct: 101 PRTTESYQPYIIE 113
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 27.2 bits (61), Expect = 3.6
Identities = 3/13 (23%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
P++++ L +R
Sbjct: 89 PQKLQTLETFIRE 101
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 27.2 bits (61), Expect = 3.6
Identities = 2/13 (15%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
+RV++ +
Sbjct: 96 RKRVKDKEASIAA 108
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23,
struc genomics, PSI, protein structure initiative;
2.20A {Chromobacterium violaceum} SCOP: c.55.1.5
c.55.1.5
Length = 305
Score = 26.8 bits (59), Expect = 4.9
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 17 RWRVFDAKGQVLGRLASQVATVVQGKDK 44
R R+ + G L + + QG K
Sbjct: 24 RIRLHASDGTPLAMAEGGASALSQGIAK 51
>3crn_A Response regulator receiver domain protein, CHEY-; structural
genomics, signal regulator receiver domain; HET: PHD;
1.58A {Methanospirillum hungatei jf-1}
Length = 132
Score = 25.9 bits (57), Expect = 5.1
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 143 YVMPPRRVRELRPRVRRAMIREQKKAEMQQ 172
Y+M P R+L +++ + ++K+
Sbjct: 101 YIMKPVNPRDLLEKIKEKLDEQEKEGHHHH 130
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 26.5 bits (59), Expect = 5.5
Identities = 3/13 (23%), Positives = 7/13 (53%)
Query: 147 PRRVRELRPRVRR 159
P+ + L +R+
Sbjct: 145 PKNLARLDGEIRK 157
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1,
glycerophosphoryl diester phosphodiesterase, ST
genomics; HET: MSE CIT GOL; 1.50A {Cytophaga
hutchinsonii atcc 33406}
Length = 272
Score = 26.5 bits (59), Expect = 5.5
Identities = 13/93 (13%), Positives = 27/93 (29%), Gaps = 16/93 (17%)
Query: 75 KVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHP 134
+ Y G +K + ++ V+ + + + D R S
Sbjct: 125 EKLSAKIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHITD------RFTLQS--- 175
Query: 135 FGDRPLEPYVMPPRRVRELRPRVRRAMIREQKK 167
F R L + P ++ + + E K
Sbjct: 176 FDVRAL-------EYMHSQYPDIKLSYLVETKG 201
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 26.5 bits (59), Expect = 5.9
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
R+L RVR
Sbjct: 127 RAAARKLAERVRI 139
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 26.1 bits (58), Expect = 8.2
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 147 PRRVRELRPRVRR 159
P+ V + VR
Sbjct: 138 PKVVARIEAAVRD 150
>3h5i_A Response regulator/sensory box protein/ggdef domain protein;
structural genomics, transcription, PSI-2; 1.90A
{Carboxydothermus hydrogenoformans z-2901}
Length = 140
Score = 25.6 bits (57), Expect = 8.4
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 143 YVMPPRRVRELRPRVRRAMIREQKKAEMQQSNKDMR 178
YVM + L V A+ + + +
Sbjct: 104 YVMKSATEQVLITIVEMALRLYEANVHANEGHHHHH 139
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 26.1 bits (58), Expect = 9.0
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 147 PRRVRELRPRVRR 159
P +R+L +RR
Sbjct: 123 PASIRKLEENIRR 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.402
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,027,073
Number of extensions: 182441
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 590
Number of HSP's successfully gapped: 89
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)