RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029588
         (191 letters)



>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score =  119 bits (299), Expect = 2e-35
 Identities = 47/119 (39%), Positives = 70/119 (58%)

Query: 17  RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
            W V DA G  LGRLA+ +A+ ++GK +P + PN   GD  +V+NA  + +TG+KL +KV
Sbjct: 11  NWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKV 70

Query: 77  YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 135
           Y  +TGY G LK  T +E + + P   I  AV  MLP+ +       +L+++ G  HP 
Sbjct: 71  YTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHPH 129


>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score =  117 bits (294), Expect = 9e-35
 Identities = 47/119 (39%), Positives = 77/119 (64%)

Query: 17  RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
           RW + DA+G+ LGRLA+++AT+++GK +P + PN   GD  +V+NA  I VTG+KL+ K+
Sbjct: 12  RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKI 71

Query: 77  YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 135
           Y  ++GY G LK+  L++ +   P   +  AV  MLP+  L     ++L+++ G +HP 
Sbjct: 72  YTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPH 130


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score =  113 bits (285), Expect = 2e-33
 Identities = 55/118 (46%), Positives = 74/118 (62%)

Query: 18  WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVY 77
           W V DA G+ LGRLA+++A  ++GK K  Y P+ D GD  IVLNA  + VTG K  +KVY
Sbjct: 15  WYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVY 74

Query: 78  YWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRDRKLRIFPGSEHPF 135
           Y HTG+IG +K+ T +E + R P   I  AV  MLP+  L     RKL+++ G+EH  
Sbjct: 75  YHHTGHIGGIKQATFEEMIARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNH 132


>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score = 90.0 bits (223), Expect = 6e-24
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 17  RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKV 76
              + DA+  ++GR+ASQVA                DG+   V+NA+   +TGR+ +   
Sbjct: 5   ADVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVE 52

Query: 77  YYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNKLRDDRD-RKLRIFPGSEHPF 135
            Y     IG+           + P    ++ +  MLP  K R       +R++ G+ +  
Sbjct: 53  KYEKRVDIGNDNGYF----YPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDE 108

Query: 136 GDRPLEPYVM 145
               L+   +
Sbjct: 109 DGEVLDGTSL 118


>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 142

 Score = 85.4 bits (211), Expect = 3e-22
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 19  RVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYY 78
           R+ +A G +LGRLAS+VA ++             +G+  +++NA+   +TG +      Y
Sbjct: 2   RIINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKY 49

Query: 79  WHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLP-RNKLRDDRDRKLRIFPGSEHPFGD 137
                +  L          +   E +R+ +  MLP +        R+L+++ G    F D
Sbjct: 50  KQRTGLRTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109

Query: 138 RPLEPYVMPPRRVRELRPR 156
           +  +   +    V  L   
Sbjct: 110 K--QLETIVEAHVSRLSRP 126


>d1njka_ d.38.1.1 (A:) Hypothetical protein YbaW {Escherichia coli
           [TaxId: 562]}
          Length = 133

 Score = 24.0 bits (51), Expect = 9.9
 Identities = 6/31 (19%), Positives = 11/31 (35%)

Query: 75  KVYYWHTGYIGHLKERTLKEQMERDPTEAIR 105
           KV  +H     H+      E +E    + + 
Sbjct: 7   KVRGYHLDVYQHVNNARYLEFLEEARWDGLE 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 728,476
Number of extensions: 34619
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)