Query 029589
Match_columns 191
No_of_seqs 219 out of 814
Neff 4.7
Searched_HMMs 29240
Date Tue Mar 26 01:25:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029589.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029589hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_H 60S ribosomal protein L 100.0 2.8E-89 9.5E-94 590.8 5.0 189 1-190 1-189 (258)
2 4a17_F RPL7A, 60S ribosomal pr 100.0 5E-86 1.7E-90 571.1 19.0 184 1-190 3-186 (255)
3 3izc_H 60S ribosomal protein R 100.0 1.1E-85 3.8E-90 569.6 5.7 188 1-190 1-193 (256)
4 2zkr_f 60S ribosomal protein L 100.0 1.3E-80 4.6E-85 540.7 7.5 179 12-190 18-197 (266)
5 3jyw_G 60S ribosomal protein L 99.9 1.3E-28 4.5E-33 190.4 -1.6 85 106-190 1-87 (113)
6 2ale_A SNU13, NHP2/L7AE family 99.8 7.8E-20 2.7E-24 144.4 9.7 64 127-190 31-94 (134)
7 1xbi_A 50S ribosomal protein L 99.8 6.7E-20 2.3E-24 141.6 8.6 81 96-190 11-91 (120)
8 3v7e_A Ribosome-associated pro 99.8 6.8E-20 2.3E-24 133.1 6.7 64 127-191 10-73 (82)
9 1rlg_A 50S ribosomal protein L 99.8 3.4E-19 1.2E-23 137.0 9.9 83 97-190 7-89 (119)
10 2lbw_A H/ACA ribonucleoprotein 99.8 4.1E-19 1.4E-23 137.4 9.8 65 126-190 18-82 (121)
11 1vq8_F 50S ribosomal protein L 99.8 4.4E-19 1.5E-23 136.5 9.7 83 97-190 9-91 (120)
12 2fc3_A 50S ribosomal protein L 99.8 7.6E-19 2.6E-23 136.1 10.6 83 97-190 8-90 (124)
13 3o85_A Ribosomal protein L7AE; 99.8 1.6E-18 5.6E-23 134.6 10.0 64 127-190 30-93 (122)
14 2xzm_U Ribosomal protein L7AE 99.8 1.5E-18 5.1E-23 135.8 8.3 65 125-189 21-85 (126)
15 2jnb_A NHP2-like protein 1; sp 99.7 6.5E-19 2.2E-23 141.0 5.3 64 127-190 49-112 (144)
16 2aif_A Ribosomal protein L7A; 99.7 1.9E-17 6.4E-22 130.5 9.9 64 127-190 40-103 (135)
17 3cpq_A 50S ribosomal protein L 99.7 2.8E-16 9.6E-21 119.4 9.1 63 127-190 20-83 (110)
18 3v7q_A Probable ribosomal prot 99.7 1.5E-16 5.2E-21 119.2 7.3 63 127-190 18-80 (101)
19 3on1_A BH2414 protein; structu 99.7 1.7E-16 5.8E-21 118.7 7.1 63 127-190 17-79 (101)
20 1w41_A 50S ribosomal protein L 99.7 2.4E-16 8.2E-21 117.7 7.9 63 127-190 15-78 (101)
21 3j21_Z 50S ribosomal protein L 99.6 6.5E-16 2.2E-20 115.1 6.6 63 127-190 14-77 (99)
22 3u5c_M 40S ribosomal protein S 99.6 4.4E-16 1.5E-20 124.8 5.3 64 127-190 39-104 (143)
23 4a18_G RPL30; ribosome, eukary 99.6 2.1E-15 7.1E-20 113.5 7.8 63 127-190 21-84 (104)
24 3iz5_f 60S ribosomal protein L 99.6 2.4E-15 8.4E-20 115.4 6.4 63 127-190 25-88 (112)
25 3u5e_c L32, RP73, YL38, 60S ri 99.6 3E-15 1E-19 113.0 6.6 63 127-190 21-84 (105)
26 2kg4_A Growth arrest and DNA-d 99.5 3.2E-14 1.1E-18 116.4 7.5 63 127-189 34-104 (165)
27 3vi6_A 60S ribosomal protein L 99.3 4.1E-12 1.4E-16 99.0 8.1 63 127-190 26-89 (125)
28 3cg6_A Growth arrest and DNA-d 98.7 5.9E-08 2E-12 78.0 8.2 62 127-188 24-93 (146)
29 3ffm_A Growth arrest and DNA-d 98.5 1.9E-07 6.6E-12 76.3 6.8 63 127-189 45-115 (167)
30 3ir9_A Peptide chain release f 93.1 0.35 1.2E-05 38.7 7.7 60 126-185 44-147 (166)
31 3agk_A Peptide chain release f 91.2 1 3.5E-05 39.6 9.2 90 86-184 263-352 (373)
32 1dt9_A ERF1, protein (eukaryot 87.2 4.9 0.00017 36.1 10.8 98 82-185 260-400 (437)
33 2qi2_A Pelota, cell division p 86.9 1.7 6E-05 38.3 7.4 97 80-185 223-322 (347)
34 3e20_C Eukaryotic peptide chai 86.3 3.2 0.00011 37.8 9.1 81 99-185 282-407 (441)
35 1x52_A Pelota homolog, CGI-17; 85.8 1.7 5.7E-05 33.1 5.9 58 126-184 36-100 (124)
36 1b93_A Protein (methylglyoxal 83.5 1.9 6.4E-05 34.3 5.4 45 132-176 70-118 (152)
37 2ohw_A YUEI protein; structura 83.2 2.4 8.2E-05 32.9 5.8 46 133-179 52-97 (133)
38 3obw_A Protein pelota homolog; 83.1 3.9 0.00013 36.3 7.9 62 124-185 281-347 (364)
39 3j15_A Protein pelota; ribosom 82.8 1.6 5.4E-05 38.6 5.3 60 126-185 278-340 (357)
40 3nkl_A UDP-D-quinovosamine 4-d 82.7 2.5 8.5E-05 30.8 5.5 54 130-183 51-104 (141)
41 2xw6_A MGS, methylglyoxal synt 82.0 1.9 6.4E-05 33.6 4.8 46 131-176 61-110 (134)
42 1vmd_A MGS, methylglyoxal synt 81.9 2.3 8E-05 34.7 5.5 45 132-176 86-134 (178)
43 2vgn_A DOM34; translation term 79.1 7 0.00024 34.8 8.2 61 124-184 293-359 (386)
44 3nk6_A 23S rRNA methyltransfer 75.9 7.4 0.00025 33.1 7.1 59 127-189 34-93 (277)
45 3oby_A Protein pelota homolog; 75.0 3.4 0.00012 36.6 4.9 59 127-185 264-326 (352)
46 1gz0_A Hypothetical tRNA/RRNA 74.6 10 0.00034 31.7 7.5 61 127-189 12-74 (253)
47 3agj_B Protein pelota homolog; 73.5 6.4 0.00022 34.6 6.3 59 127-185 271-335 (358)
48 2yvq_A Carbamoyl-phosphate syn 67.2 5.3 0.00018 30.5 3.9 43 134-176 86-130 (143)
49 3mca_B Protein DOM34, elongati 65.1 14 0.00048 33.0 6.7 97 75-185 251-354 (390)
50 1ipa_A RRMH, RNA 2'-O-ribose m 58.5 20 0.00067 30.3 6.2 61 127-189 28-90 (274)
51 2lqo_A Putative glutaredoxin R 51.9 36 0.0012 23.9 5.8 56 134-190 18-86 (92)
52 3ib7_A ICC protein; metallopho 43.8 33 0.0011 27.7 5.0 50 133-182 53-111 (330)
53 3a1s_A Iron(II) transport prot 42.5 40 0.0014 27.3 5.4 43 143-185 82-124 (258)
54 1tp9_A Peroxiredoxin, PRX D (t 41.8 58 0.002 23.9 5.8 46 139-189 65-114 (162)
55 2wji_A Ferrous iron transport 41.0 34 0.0012 24.8 4.4 38 144-181 108-148 (165)
56 3iby_A Ferrous iron transport 40.8 24 0.00083 28.7 3.8 47 140-186 79-125 (256)
57 1uf3_A Hypothetical protein TT 38.7 54 0.0018 24.6 5.3 47 135-182 23-74 (228)
58 3i8s_A Ferrous iron transport 38.7 25 0.00085 28.8 3.6 42 143-184 84-125 (274)
59 3b1v_A Ferrous iron uptake tra 35.1 44 0.0015 27.5 4.6 17 164-180 130-146 (272)
60 3s81_A Putative aspartate race 34.7 33 0.0011 28.8 3.7 41 133-177 88-128 (268)
61 3ist_A Glutamate racemase; str 33.7 27 0.00091 29.4 3.0 40 135-177 58-97 (269)
62 1sur_A PAPS reductase; assimil 32.3 1.7E+02 0.006 22.6 7.8 36 144-179 70-105 (215)
63 3av0_A DNA double-strand break 31.7 60 0.0021 27.8 5.0 49 133-182 49-106 (386)
64 3out_A Glutamate racemase; str 31.7 25 0.00087 29.4 2.6 40 135-177 60-100 (268)
65 3uhf_A Glutamate racemase; str 31.5 24 0.00084 29.9 2.4 40 135-177 77-116 (274)
66 2dyk_A GTP-binding protein; GT 31.4 24 0.00081 24.9 2.0 40 144-183 79-120 (161)
67 2ggt_A SCO1 protein homolog, m 31.4 1E+02 0.0035 21.8 5.6 45 144-189 61-109 (164)
68 2yv5_A YJEQ protein; hydrolase 31.3 37 0.0013 28.4 3.5 17 164-180 135-151 (302)
69 1ivn_A Thioesterase I; hydrola 30.0 88 0.003 22.9 5.2 46 133-178 88-140 (190)
70 3o63_A Probable thiamine-phosp 30.0 80 0.0027 26.0 5.3 54 134-189 47-113 (243)
71 2ioj_A Hypothetical protein AF 29.2 72 0.0025 23.4 4.5 48 128-178 55-105 (139)
72 1ii7_A MRE11 nuclease; RAD50, 29.0 1E+02 0.0035 25.6 5.9 48 134-181 30-85 (333)
73 2q8u_A Exonuclease, putative; 28.9 89 0.003 25.9 5.5 48 133-182 50-107 (336)
74 2yvt_A Hypothetical protein AQ 28.4 1E+02 0.0036 23.8 5.6 24 133-156 21-44 (260)
75 3ecd_A Serine hydroxymethyltra 28.3 79 0.0027 26.0 5.0 46 133-180 161-208 (425)
76 3tho_B Exonuclease, putative; 28.2 75 0.0026 27.3 5.1 48 133-182 32-89 (379)
77 3mfq_A TROA, high-affinity zin 28.2 68 0.0023 26.7 4.7 45 133-178 201-245 (282)
78 1jkx_A GART;, phosphoribosylgl 28.0 85 0.0029 25.3 5.1 47 128-178 5-57 (212)
79 1t1v_A SH3BGRL3, SH3 domain-bi 27.8 98 0.0034 20.7 4.7 46 134-180 22-69 (93)
80 2zsk_A PH1733, 226AA long hypo 27.4 45 0.0015 26.5 3.3 40 134-177 63-102 (226)
81 2wjg_A FEOB, ferrous iron tran 27.4 75 0.0026 23.0 4.3 39 143-181 111-152 (188)
82 1x7o_A Avirb, rRNA methyltrans 27.0 2E+02 0.0069 24.1 7.4 59 127-189 40-99 (287)
83 1zuw_A Glutamate racemase 1; ( 26.8 42 0.0014 27.9 3.1 40 135-177 56-96 (272)
84 2d87_A Smoothelin splice isofo 26.7 27 0.00092 26.3 1.7 26 73-100 27-52 (128)
85 2wfc_A Peroxiredoxin 5, PRDX5; 26.7 83 0.0029 23.6 4.6 44 141-189 63-110 (167)
86 4fbw_A DNA repair protein RAD3 26.4 81 0.0028 28.3 5.0 24 133-156 41-64 (417)
87 3pqc_A Probable GTP-binding pr 26.3 49 0.0017 24.0 3.1 18 166-183 128-145 (195)
88 3t1o_A Gliding protein MGLA; G 26.2 34 0.0012 24.8 2.2 18 163-180 156-174 (198)
89 3gbx_A Serine hydroxymethyltra 26.0 93 0.0032 25.5 5.1 43 133-176 158-202 (420)
90 3gkn_A Bacterioferritin comigr 25.4 94 0.0032 22.2 4.5 46 139-189 64-110 (163)
91 3hp4_A GDSL-esterase; psychrot 25.0 1E+02 0.0036 22.2 4.7 44 136-179 95-145 (185)
92 3rjt_A Lipolytic protein G-D-S 24.9 1.1E+02 0.0036 22.4 4.8 45 134-178 120-175 (216)
93 3ceu_A Thiamine phosphate pyro 24.4 60 0.002 25.5 3.4 55 134-189 17-71 (210)
94 3ojc_A Putative aspartate/glut 24.2 53 0.0018 26.6 3.1 41 133-177 65-105 (231)
95 1wik_A Thioredoxin-like protei 24.1 1.2E+02 0.004 21.0 4.6 47 133-180 33-79 (109)
96 4dhe_A Probable GTP-binding pr 24.1 55 0.0019 24.6 3.1 39 145-183 116-156 (223)
97 3qmx_A Glutaredoxin A, glutare 24.1 1E+02 0.0035 21.2 4.3 46 134-180 30-76 (99)
98 3av3_A Phosphoribosylglycinami 23.9 99 0.0034 24.8 4.7 48 128-179 8-61 (212)
99 1ek0_A Protein (GTP-binding pr 23.9 56 0.0019 22.9 2.9 19 163-181 134-152 (170)
100 2d88_A Protein mical-3; all al 23.8 56 0.0019 24.2 3.0 25 73-99 29-53 (121)
101 1z2a_A RAS-related protein RAB 23.8 56 0.0019 22.9 2.9 38 144-181 109-150 (168)
102 2gzm_A Glutamate racemase; enz 23.7 49 0.0017 27.3 2.9 40 135-177 56-95 (267)
103 3fw2_A Thiol-disulfide oxidore 23.7 1.5E+02 0.005 20.8 5.2 42 145-190 70-115 (150)
104 3qq5_A Small GTP-binding prote 23.3 70 0.0024 28.5 4.0 41 144-184 113-153 (423)
105 1jdq_A TM006 protein, hypothet 23.0 1.8E+02 0.0062 20.6 5.5 42 134-178 41-84 (98)
106 1o69_A Aminotransferase; struc 22.8 1E+02 0.0035 25.6 4.8 44 133-176 109-154 (394)
107 2fn4_A P23, RAS-related protei 22.7 57 0.002 23.2 2.8 19 163-181 137-155 (181)
108 2eq5_A 228AA long hypothetical 22.5 1.3E+02 0.0044 23.5 5.1 36 137-177 68-103 (228)
109 2vi8_A Serine hydroxymethyltra 22.5 1.1E+02 0.0038 25.0 4.8 50 133-184 152-203 (405)
110 3k53_A Ferrous iron transport 22.5 1.1E+02 0.0038 24.5 4.7 17 163-179 131-147 (271)
111 3hh1_A Tetrapyrrole methylase 22.4 1.7E+02 0.0058 20.8 5.4 21 159-179 96-116 (117)
112 1kao_A RAP2A; GTP-binding prot 22.4 54 0.0018 22.8 2.6 41 144-184 108-152 (167)
113 3g0t_A Putative aminotransfera 22.3 97 0.0033 25.8 4.5 45 133-177 171-221 (437)
114 3nl6_A Thiamine biosynthetic b 22.3 98 0.0034 28.6 4.9 54 134-189 29-86 (540)
115 2q0q_A ARYL esterase; SGNH hyd 22.3 1.4E+02 0.0049 22.0 5.1 20 159-178 164-183 (216)
116 2oho_A Glutamate racemase; iso 22.2 57 0.002 26.9 3.0 40 135-177 65-104 (273)
117 3d03_A Phosphohydrolase; glyce 22.1 1.7E+02 0.0057 22.6 5.6 50 133-182 28-82 (274)
118 3q85_A GTP-binding protein REM 22.1 45 0.0015 23.6 2.1 18 163-180 132-149 (169)
119 4bas_A ADP-ribosylation factor 22.1 53 0.0018 24.0 2.5 41 144-184 86-140 (199)
120 2lkc_A Translation initiation 22.0 51 0.0018 23.5 2.4 15 169-183 105-119 (178)
121 3tb6_A Arabinose metabolism tr 21.8 1.6E+02 0.0054 22.8 5.5 43 137-180 65-108 (298)
122 4f82_A Thioredoxin reductase; 21.8 1.3E+02 0.0045 23.5 5.0 50 135-189 73-126 (176)
123 2jfz_A Glutamate racemase; cel 21.8 46 0.0016 27.2 2.3 39 135-176 53-91 (255)
124 1s3l_A Hypothetical protein MJ 21.7 89 0.003 24.1 3.9 43 134-181 42-85 (190)
125 2h57_A ADP-ribosylation factor 21.6 43 0.0015 24.7 1.9 14 170-183 125-138 (190)
126 3llu_A RAS-related GTP-binding 21.6 59 0.002 24.2 2.7 39 145-183 96-141 (196)
127 2ywr_A Phosphoribosylglycinami 21.3 1.7E+02 0.0058 23.4 5.7 41 134-178 16-58 (216)
128 1upt_A ARL1, ADP-ribosylation 21.2 44 0.0015 23.7 1.9 14 170-183 107-120 (171)
129 1d2f_A MALY protein; aminotran 21.1 1.1E+02 0.0037 25.1 4.5 46 133-178 151-202 (390)
130 1fov_A Glutaredoxin 3, GRX3; a 21.1 1.6E+02 0.0055 18.3 4.8 45 135-180 16-60 (82)
131 3qel_B Glutamate [NMDA] recept 21.1 1.5E+02 0.0051 24.9 5.5 47 133-179 52-98 (364)
132 3isl_A Purine catabolism prote 20.9 1.1E+02 0.0037 25.1 4.5 43 133-176 125-171 (416)
133 3t5g_A GTP-binding protein RHE 20.8 49 0.0017 23.9 2.1 41 144-184 111-155 (181)
134 2i0x_A Hypothetical protein PF 20.5 51 0.0017 23.1 2.0 27 147-174 2-28 (85)
135 1svv_A Threonine aldolase; str 20.5 1.3E+02 0.0045 23.8 4.8 43 133-176 128-182 (359)
136 1y8q_A Ubiquitin-like 1 activa 20.1 90 0.0031 26.8 3.9 35 143-179 124-158 (346)
No 1
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=100.00 E-value=2.8e-89 Score=590.81 Aligned_cols=189 Identities=86% Similarity=1.338 Sum_probs=130.7
Q ss_pred CCCCCCCCCCCcccccCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHHHHHHHhhhcCCCcccccccc
Q 029589 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~kk~~nplfekrpknfgig~~iqpkrdltrfvkwP~yirlQrq~~il~~rlKvppainqf~~~ 80 (191)
|+|+.|+..++..+ .++++++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+|||||++
T Consensus 1 ~~pk~~~~~~~~~~-~~~~k~~nplfekrpknfgigqdiqpkrdltrfvkwP~yirlqrqr~il~~rlKvppainqF~~~ 79 (258)
T 3iz5_H 1 MAPKRGGRAPVPAK-KKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRT 79 (258)
T ss_dssp ----------------------------------------------------------CCSCCCCHHHHSCCSCSHHHHH
T ss_pred CCCCCCCCCCCccc-cccccccCcccccCCCccccCccCCCCcccceeeeccceeeHHHHHHHHHhcccCCCcccccCCc
Confidence 89985554444322 23368999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchh
Q 029589 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV 160 (191)
Q Consensus 81 l~~~~a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv 160 (191)
||+|+|||||+|+|||||||++||++||+++||++|+|+++++++|.+|..|+|+||++||+|+|+||||||||||+|++
T Consensus 80 ld~~tatql~kl~~KYrPEtk~ekk~rL~~~a~~ka~gk~~~~krp~~lk~GvneVTklVE~kKAqLVVIA~DVdPiElV 159 (258)
T 3iz5_H 80 LDKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELV 159 (258)
T ss_dssp HHHHHCCCCCCCCCCCCCTHHHHHHHHHHHHHHTTCCCCSSSSCCCCCEEESHHHHHHHHHTTCEEEEEEESCCSSTHHH
T ss_pred CchhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhcCCCCCCCCCceeecccHHHHHHHHcCcceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 161 VWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 161 ~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
.|||+||++||||||||+|+++||++||..
T Consensus 160 ~fLPaLC~k~gVPY~iVk~KarLG~~vgrK 189 (258)
T 3iz5_H 160 VWLPALCRKMEVPYCIVKGKARLGSIVHKK 189 (258)
T ss_dssp HHHHHHHTTTTCCEEEESCHHHHHHHTTCS
T ss_pred hHHHHHHHhcCCCeEEECCHHHHHHHhCCc
Confidence 999999999999999999999999999975
No 2
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=100.00 E-value=5e-86 Score=571.06 Aligned_cols=184 Identities=59% Similarity=0.990 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCcccccCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHHHHHHHhhhcCCCcccccccc
Q 029589 1 MAPKRGGKVAAAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKT 80 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~kk~~nplfekrpknfgig~~iqpkrdltrfvkwP~yirlQrq~~il~~rlKvppainqf~~~ 80 (191)
|+|++|++. ++ ..+++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+|||||++
T Consensus 3 ~~p~~~~~~----~~--~~k~~nplfekrpknfgig~diqpkrdlt~fvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ 76 (255)
T 4a17_F 3 KAPKKITKP----KK--AEKKKNPLFQAKPRSFRVGGDIQPKRDLTRFVRWPRYITLQRQKRVLLQRLKVPPQIHQFTKT 76 (255)
T ss_dssp ----------------------CCTTCCCCCCCSSSSSCCCCCCCGGGCBCCHHHHHHHHHHHHHHHSBCCHHHHGGGCC
T ss_pred CCCccCccc----cc--cccccCcccccCCCcCCcCCCCCCccccccceeccceeeHHHHHHHHHhcccCCCcccccCCC
Confidence 677755422 12 348899999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchh
Q 029589 81 LDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELV 160 (191)
Q Consensus 81 l~~~~a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv 160 (191)
||+|+|||||+|+|||||||++||++||+++||++|+|+++++++|.+|.+|+++|+++|++|+|+|||||+||||++++
T Consensus 77 ld~~~a~ql~kl~~kyrpetk~ekk~rl~~~a~~ka~gk~~~~k~p~~lk~GvneVtKaIekgKAqLVVIA~DvdPielv 156 (255)
T 4a17_F 77 LDKNQSSNLFKLLASYAPEKPAEKKQRLVAQAEAKKDGKQVETKKPIVLKYGLNHITTLIENKQAKLVVIAHDVDPIELV 156 (255)
T ss_dssp CCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTTCCCCCCCCCCEEECHHHHHHHHHTSCCSEEEEESCCSSTHHH
T ss_pred CChhhHHHHHHHHHhcCccchHHHHHHHHHHHHHHhcCCCCCCCCCceeecchHHHHHHHHcCCceEEEEeCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 161 VWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 161 ~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
.|||+||++||||||+|+|+++||++||..
T Consensus 157 ~~LPaLCee~~VPY~~V~sK~~LG~avGrK 186 (255)
T 4a17_F 157 IFLPQLCRKNDVPFAFVKGKAALGKLVNKK 186 (255)
T ss_dssp HHHHHHHHHTTCCEEEESCHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCEEEECCHHHHHHHhCCC
Confidence 999999999999999999999999999975
No 3
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=100.00 E-value=1.1e-85 Score=569.65 Aligned_cols=188 Identities=60% Similarity=0.948 Sum_probs=130.4
Q ss_pred CCCCCCCCCC---CcccccCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHHHHHHHhhhcCCCccccc
Q 029589 1 MAPKRGGKVA---AAPAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQF 77 (191)
Q Consensus 1 ~~~~~~~~~~---~~~~~~~~kk~~nplfekrpknfgig~~iqpkrdltrfvkwP~yirlQrq~~il~~rlKvppainqf 77 (191)
|+| |++.+ ++.+++++++++|||||+|||||||||||||+|||||||+||+||||||||+|||+||||||+||||
T Consensus 1 ~~~--~kk~~~~p~~~kk~~~kk~~nplfekrpknfgig~diqpkrdl~~fvkwp~yi~lqrq~~il~~rlkvpp~inqf 78 (256)
T 3izc_H 1 MAP--GKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQF 78 (256)
T ss_dssp -------------------------------------------------------------CCSSCCCTTTTCCCSCSHH
T ss_pred CCC--CCCCCCCCcchhhhccccccCcccccCCcccccCCCCCCcccchhheeccceeeHHHHHHHHHhcccCCCchhhc
Confidence 665 56643 4778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCC--cccCCCceeeechhHHHHHHHhcCcceEEEecCCC
Q 029589 78 TKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD 155 (191)
Q Consensus 78 ~~~l~~~~a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~--~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~Dvd 155 (191)
|++||+|+|||||+|+|||||||++||++||+++||++|+|++ +|+++|.+|.+|+++|+++|++|+|+|||||+|||
T Consensus 79 ~~~ld~~~a~~l~kl~~kyrpetk~ekk~rl~~~a~~~a~gk~~~~~~k~p~~lk~G~keV~KaIekgKAkLVVIA~Dad 158 (256)
T 3izc_H 79 QYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVD 158 (256)
T ss_dssp HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHTCCCCSSCSSCCCSCCEEESHHHHHHHHHHTCCSEEEEESCCS
T ss_pred CCcCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCCCCCCCCChhhhccHHHHHHHHHhCcceEEEEeCCCC
Confidence 9999999999999999999999999999999999999999997 78999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 156 PIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 156 P~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
|++++.|||+||+++|||||+++|+.+||++||++
T Consensus 159 P~eivk~LpaLC~k~gVPy~~V~sK~eLG~A~Gkk 193 (256)
T 3izc_H 159 PIELVVFLPALCKKMGVPYAIVKGKARLGTLVNQK 193 (256)
T ss_dssp SGGGTTHHHHHHHHHTCCEEEESCHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC
Confidence 99999999999999999999999999999999985
No 4
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.3e-80 Score=540.71 Aligned_cols=179 Identities=63% Similarity=1.032 Sum_probs=91.4
Q ss_pred cccccCCccccCCccccCCCccccCCCCCCCCccccccccchhhHhHHHHHHHHhhhcCCCccccccccCChhhHHHHHh
Q 029589 12 APAKKKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAIRIQRQRRILRQRLKVPPALNQFTKTLDKNLASSLFK 91 (191)
Q Consensus 12 ~~~~~~~kk~~nplfekrpknfgig~~iqpkrdltrfvkwP~yirlQrq~~il~~rlKvppainqf~~~l~~~~a~~l~k 91 (191)
+.+++++++++|||||+|||||||||||||+|||||||+||+|||||||++|||+||||||+||||+++||+|+|+|||+
T Consensus 18 ~~k~~~~~~~~npl~ekrpknf~ig~~i~pkrdl~rfvkwp~yirlqrq~~il~~rlkvpp~inqf~~~ld~~~a~~l~~ 97 (266)
T 2zkr_f 18 VVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLK 97 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccCCcccccCccccccCCCcccccchHhHhccchHHHHHHHHHHHHhhccCCCchhhccccccchhHHHHHH
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccHHHHHHHHHHHHHHHHcCCC-cccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhc
Q 029589 92 LLLKYRPEDRAAKKERLLKRAQAEAEGKT-VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKM 170 (191)
Q Consensus 92 l~~kyrPEt~~ekk~rl~~~a~~~a~gk~-~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~ 170 (191)
|+|||||||++||++||++.||++|+|++ +++++|..|++|+++|+++|++|+|+|||||+||||++++.|||+||+++
T Consensus 98 l~~kyrpe~k~ekk~rl~~~a~~~a~~~~~~~~k~~~~L~~G~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~ 177 (266)
T 2zkr_f 98 LAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKM 177 (266)
T ss_dssp ------CHHHHHHHHHHHHTTSSTTTCCSCCSSSSCCCCCBSHHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHH
T ss_pred HHhhcCcccHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeeeChHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEECCHhHHhhhhCCC
Q 029589 171 EIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 171 ~VPy~iV~sK~~LG~a~Gi~ 190 (191)
|||||+++|+.+||++||++
T Consensus 178 ~VPyi~v~sk~eLG~A~Gkk 197 (266)
T 2zkr_f 178 GVPYCIIKGKARLGHLVHRK 197 (266)
T ss_dssp TCCEEEESCHHHHHHHHTSS
T ss_pred CCCEEEECCHHHHHHHhCCC
Confidence 99999999999999999985
No 5
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=99.94 E-value=1.3e-28 Score=190.42 Aligned_cols=85 Identities=65% Similarity=0.980 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHcCCC--cccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHH
Q 029589 106 ERLLKRAQAEAEGKT--VEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (191)
Q Consensus 106 ~rl~~~a~~~a~gk~--~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~L 183 (191)
+||+++||++|+|++ +|+++|++|.+|+++|+++|++|+|+|||||+|+||++++.|||+||++||||||+++||.+|
T Consensus 1 ~rl~~~a~~~~~~~~~~~~~~~~~~l~~G~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~L 80 (113)
T 3jyw_G 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARL 80 (113)
T ss_dssp CCCCSSCCCHHHHHHHHTCSSSSSCEEESHHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTT
T ss_pred CccHHHHHHHhcCCCCCCCCCCCchhhchHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHH
Confidence 467888999999998 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCC
Q 029589 184 GSVNILN 190 (191)
Q Consensus 184 G~a~Gi~ 190 (191)
|++||++
T Consensus 81 G~a~G~k 87 (113)
T 3jyw_G 81 GTLVNQK 87 (113)
T ss_dssp HHHHCSS
T ss_pred HHHHCCC
Confidence 9999986
No 6
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=99.81 E-value=7.8e-20 Score=144.41 Aligned_cols=64 Identities=28% Similarity=0.582 Sum_probs=61.7
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..|+.|+++|+++|++|+|+|||||+|+||++++.+||+||+++||||++++|+.+||++||++
T Consensus 31 gkl~~G~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~G~~ 94 (134)
T 2ale_A 31 RQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVS 94 (134)
T ss_dssp TCEEESHHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHHHTTCS
T ss_pred CCcccCchHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999986
No 7
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=99.81 E-value=6.7e-20 Score=141.62 Aligned_cols=81 Identities=38% Similarity=0.540 Sum_probs=74.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEE
Q 029589 96 YRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC 175 (191)
Q Consensus 96 yrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~ 175 (191)
.-||+..+|..+++..| ..+..|.++|+++|++|+|+|||||+|+||++++.+|+.+|++++|||+
T Consensus 11 ~~p~~l~~k~~~ll~~A--------------gkl~~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~ 76 (120)
T 1xbi_A 11 KVPEEIQKELLDAVAKA--------------QKIKKGANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYA 76 (120)
T ss_dssp CCCHHHHHHHHHHHHTC--------------SEEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEE
T ss_pred cCCHHHHHHHHHHHHHc--------------CCccccHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEE
Confidence 46888888888888653 3688999999999999999999999999999999999999999999999
Q ss_pred EECCHhHHhhhhCCC
Q 029589 176 IVKGKSRLGSVNILN 190 (191)
Q Consensus 176 iV~sK~~LG~a~Gi~ 190 (191)
++.|+.+||++||++
T Consensus 77 ~v~sk~eLG~a~G~~ 91 (120)
T 1xbi_A 77 YVASKQDLGKAAGLE 91 (120)
T ss_dssp EESCHHHHHHHTTCS
T ss_pred EeCCHHHHHHHhCCC
Confidence 999999999999986
No 8
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=99.80 E-value=6.8e-20 Score=133.13 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=61.2
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILNS 191 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~~ 191 (191)
..+..|.++|+++|++|+|+|||||+|+|| +++.+++.+|++++|||++++|+.+||++||++.
T Consensus 10 gk~~~G~~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~ 73 (82)
T 3v7e_A 10 KSIIIGTKQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLGKACGIEV 73 (82)
T ss_dssp SEEEESHHHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSS
T ss_pred CCeeEcHHHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCC
Confidence 578899999999999999999999999999 8899999999999999999999999999999863
No 9
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=99.79 E-value=3.4e-19 Score=137.04 Aligned_cols=83 Identities=40% Similarity=0.573 Sum_probs=74.8
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEE
Q 029589 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 97 rPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~i 176 (191)
-|++..++-.+++..|.+. ..+..|.++|+++|++|+|+|||||+|+||++++.+|+.+|++++|||++
T Consensus 7 ~p~~l~~~i~~~L~lA~ka-----------g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 75 (119)
T 1rlg_A 7 VPEDMQNEALSLLEKVRES-----------GKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIY 75 (119)
T ss_dssp CCSHHHHHHHHHHHHHHHH-----------SEEEESHHHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHh-----------CCeeECHHHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 4677777777888777542 47889999999999999999999999999999889999999999999999
Q ss_pred ECCHhHHhhhhCCC
Q 029589 177 VKGKSRLGSVNILN 190 (191)
Q Consensus 177 V~sK~~LG~a~Gi~ 190 (191)
+.|+.+||++||.+
T Consensus 76 ~~sk~eLG~a~G~~ 89 (119)
T 1rlg_A 76 VKSKNDLGRAVGIE 89 (119)
T ss_dssp ESCHHHHHHHTTCS
T ss_pred eCCHHHHHHHhCCC
Confidence 99999999999986
No 10
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=99.79 E-value=4.1e-19 Score=137.39 Aligned_cols=65 Identities=29% Similarity=0.552 Sum_probs=62.0
Q ss_pred CceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 126 PIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 126 p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
...|..|+++|+++|++|+|+|||||+|++|++++.+||+||+++||||++++|+.+||++||+.
T Consensus 18 ~gkl~~G~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k 82 (121)
T 2lbw_A 18 AKNVKRGVKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATK 82 (121)
T ss_dssp TTCEEESHHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCS
T ss_pred cCCccccHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999964
No 11
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=99.78 E-value=4.4e-19 Score=136.55 Aligned_cols=83 Identities=33% Similarity=0.466 Sum_probs=72.8
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEE
Q 029589 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 97 rPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~i 176 (191)
.|++..++-..++..|.+ + ..+..|.++|+++|++|+|+|||||+|+||++++.+|+.+|++++|||++
T Consensus 9 ~p~~l~~~i~~~L~~A~k--a---------g~l~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 77 (120)
T 1vq8_F 9 VPADLEDDALEALEVARD--T---------GAVKKGTNETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIF 77 (120)
T ss_dssp CCHHHHHHHHHHHHHHHH--S---------SCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHH--c---------CCEeECHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEE
Confidence 356666666677766542 1 36889999999999999999999999999999899999999999999999
Q ss_pred ECCHhHHhhhhCCC
Q 029589 177 VKGKSRLGSVNILN 190 (191)
Q Consensus 177 V~sK~~LG~a~Gi~ 190 (191)
+.|+.+||++||++
T Consensus 78 ~~sk~eLG~a~G~~ 91 (120)
T 1vq8_F 78 VEQQDDLGHAAGLE 91 (120)
T ss_dssp ESCHHHHHHHTTCS
T ss_pred ECCHHHHHHHhCCC
Confidence 99999999999986
No 12
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=99.78 E-value=7.6e-19 Score=136.10 Aligned_cols=83 Identities=45% Similarity=0.627 Sum_probs=73.1
Q ss_pred CcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEE
Q 029589 97 RPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 97 rPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~i 176 (191)
-|++..++-..++..|.+. ..++.|.++|+++|++|+++|||||+|+||++++.+|+.+|++++|||++
T Consensus 8 ~p~~l~~~i~~~L~lA~ka-----------gkl~~G~~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~ 76 (124)
T 2fc3_A 8 VPEDLAEKAYEAVKRARET-----------GRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVY 76 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHH-----------SEEEESHHHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHHHh-----------CCccCCHHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEE
Confidence 3556666666777766432 47889999999999999999999999999999899999999999999999
Q ss_pred ECCHhHHhhhhCCC
Q 029589 177 VKGKSRLGSVNILN 190 (191)
Q Consensus 177 V~sK~~LG~a~Gi~ 190 (191)
+.|+.+||++||++
T Consensus 77 v~sk~eLG~a~G~~ 90 (124)
T 2fc3_A 77 VPSKKRLGEAAGIE 90 (124)
T ss_dssp ESCHHHHHHHTTCS
T ss_pred ECCHHHHHHHhCCC
Confidence 99999999999986
No 13
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=99.77 E-value=1.6e-18 Score=134.55 Aligned_cols=64 Identities=36% Similarity=0.636 Sum_probs=61.7
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||+|+||++++.+|+.+|+++||||++++|+.+||++||++
T Consensus 30 gklv~G~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~Gk~ 93 (122)
T 3o85_A 30 QAIKRGANEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRACNVS 93 (122)
T ss_dssp TCEEESHHHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHHTTCS
T ss_pred CCEeEcHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCC
Confidence 4688999999999999999999999999999988999999999999999999999999999986
No 14
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=99.76 E-value=1.5e-18 Score=135.78 Aligned_cols=65 Identities=32% Similarity=0.371 Sum_probs=62.0
Q ss_pred CCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 125 KPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 125 ~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
+...+..|+++++++|++|+|+|||||+|+||.+++.+||+||++++|||++++|+.+||+|||+
T Consensus 21 ~~gkl~~G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G~ 85 (126)
T 2xzm_U 21 CQDAISKGLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLGH 85 (126)
T ss_dssp SSSCEEESHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHTC
T ss_pred HcCCEeecHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCC
Confidence 34578999999999999999999999999999899999999999999999999999999999997
No 15
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=99.75 E-value=6.5e-19 Score=140.96 Aligned_cols=64 Identities=28% Similarity=0.609 Sum_probs=61.4
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..++.|+++|+++|++|+|+|||||+|+||++++.+||.+|++++|||++++|+.+||+|||++
T Consensus 49 gkl~~G~kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG~a~Gk~ 112 (144)
T 2jnb_A 49 KQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS 112 (144)
T ss_dssp TCCCBCHHHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHHHHHTCS
T ss_pred CCccccHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHHHHhCCC
Confidence 3578999999999999999999999999999899999999999999999999999999999986
No 16
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=99.72 E-value=1.9e-17 Score=130.47 Aligned_cols=64 Identities=28% Similarity=0.572 Sum_probs=61.5
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+++|||||+|++|++++.+|+.+|++++|||+++.|+.+||++||++
T Consensus 40 gklv~G~~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~ 103 (135)
T 2aif_A 40 KQLRKGANEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVS 103 (135)
T ss_dssp TCEEESHHHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCS
T ss_pred CCcccCHHHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCC
Confidence 4688999999999999999999999999999888899999999999999999999999999986
No 17
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=2.8e-16 Score=119.35 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=59.6
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE-CCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV-~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||+|+ |.+++.+|+.+|++++|||+++ .|+.+||++||.+
T Consensus 20 gkl~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~ 83 (110)
T 3cpq_A 20 GKVILGSKRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKP 83 (110)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCS
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCc
Confidence 4688999999999999999999999999 6699999999999999998887 9999999999986
No 18
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=99.66 E-value=1.5e-16 Score=119.17 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=59.0
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||+|++|. .+..++.+|++++|||+++.|+.+||++||.+
T Consensus 18 gk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~vp~~~~~s~~eLG~A~Gk~ 80 (101)
T 3v7q_A 18 RKVVSGEDLVIKEIRNARAKLVLLTEDASSN-TAKKVTDKCNYYKVPYKKVESRAVLGRSIGKE 80 (101)
T ss_dssp TCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHTTCCEEEESCHHHHHHHTTSS
T ss_pred hhcccchhhhHHHHhcCceeEEEEecccccc-chhhhcccccccCCCeeeechHHHHHhhhCcc
Confidence 4688999999999999999999999999997 55678999999999999999999999999986
No 19
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=99.65 E-value=1.7e-16 Score=118.66 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=59.2
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||+|++|. .+.+++.+|++++|||+++.|+.+||++||.+
T Consensus 17 gk~v~G~~~v~kai~~gka~lViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~ 79 (101)
T 3on1_A 17 RQLLTGEEQVVKAVQNGQVTLVILSSDAGIH-TKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH 79 (101)
T ss_dssp TCEEESHHHHHHHHHTTCCSEEEEETTSCHH-HHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCCCCHH-HHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc
Confidence 4688999999999999999999999999995 56789999999999999999999999999985
No 20
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=99.65 E-value=2.4e-16 Score=117.67 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE-CCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV-~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||+|+ |.+.+.+|+.+|++++|||+++ .|+.+||++||.+
T Consensus 15 gkl~~G~~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~ 78 (101)
T 1w41_A 15 GKIVMGARKSIQYAKMGGAKLIIVARNA-RPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRP 78 (101)
T ss_dssp SEEEESHHHHHHHHHHTCCSEEEEETTS-CHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCS
T ss_pred CCEeECHHHHHHHHHcCCCcEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCC
Confidence 4688999999999999999999999995 5588999999999999998886 9999999999986
No 21
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.61 E-value=6.5e-16 Score=115.09 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=57.9
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE-CCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV-~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+++|||||+|+++ +.+.+++.+|++++|||+.+ .|+.+||++||.+
T Consensus 14 gk~v~G~~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~ 77 (99)
T 3j21_Z 14 GKVVLGSNETIRLAKTGGAKLIIVAKNAPK-EIKDDIYYYAKLSDIPVYEFEGTSVELGTLLGKP 77 (99)
T ss_dssp SCEEESHHHHHHHHHHTCCSEEEEECCCCH-HHHHHHHHHHHHTTCCEEEECCCSCGGGGTTCST
T ss_pred CCEeECHHHHHHHHHcCCccEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHHCCC
Confidence 468899999999999999999999999765 88889999999999997665 9999999999986
No 22
>3u5c_M 40S ribosomal protein S12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_M
Probab=99.61 E-value=4.4e-16 Score=124.76 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=61.4
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHH--hcCCCEEEECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR--KMEIPYCIVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~--k~~VPy~iV~sK~~LG~a~Gi~ 190 (191)
..|..|+++++++|++|+|+|||||.|+||.+++.++++||+ +++|||++|+|+.+||+||||.
T Consensus 39 g~l~~G~~et~Kal~kg~a~LvvLA~D~~~~~i~k~i~~lC~~~e~~IP~i~V~s~keLG~a~Gl~ 104 (143)
T 3u5c_M 39 DGLARGLRESTKALTRGEALLVVLVSSVTEANIIKLVEGLANDPENKVPLIKVADAKQLGEWAGLG 104 (143)
T ss_dssp TCEEESHHHHHHHHSSTTCSCEECCSCCSTTHHHHHHHHHHHCSSSCCCCCCCSCHHHHHHHSSCC
T ss_pred CCEeEcHHHHHHHHhcCceeEEEEeCCCCHHHHHHHHHHHHhhhhhCCCEEEECCHHHHhHHhCcC
Confidence 468999999999999999999999999998899999999999 9999999999999999999984
No 23
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=99.59 E-value=2.1e-15 Score=113.53 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=58.9
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEE-EECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~-iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+|+|||||.|++|. .+.+++.+|++++|||+ ++.|+.+||+|||.+
T Consensus 21 gklv~G~~~v~kai~~gkaklViiA~D~~~~-~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~ 84 (104)
T 4a18_G 21 GKATLGYKSTIKAIRNGTAKLVFISNNCPTV-RKSEIEYYASLAQISIHHFVGSNVELGTACGKY 84 (104)
T ss_dssp SEEEESHHHHHHHHHHTCCCEEEECTTSCHH-HHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred CCEeECHHHHHHHHHcCCceEEEEeCCCCHH-HHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCc
Confidence 4688999999999999999999999999995 56779999999999999 699999999999986
No 24
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=99.57 E-value=2.4e-15 Score=115.40 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=59.8
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE-CCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV-KGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV-~sK~~LG~a~Gi~ 190 (191)
..+..|.++|+++|++|+|+|||||.|++| ..+..++.+|+.++|||+++ .|+.+||++||++
T Consensus 25 gk~~~G~~~t~kai~~gkakLVilA~D~~~-~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~ 88 (112)
T 3iz5_f 25 GKYTLGYKTVLKTLRSSLGKLIILANNCPP-LRKSEIETYAMLAKISVHHFHGNNVDLGTACGKY 88 (112)
T ss_dssp CEEEESHHHHHHHHHTTCCSEEEECSCCCH-HHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTT
T ss_pred CCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCc
Confidence 478899999999999999999999999999 67788999999999999999 9999999999986
No 25
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=99.57 E-value=3e-15 Score=112.95 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=59.2
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEE-EECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~-iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+++|||||.|++| ..+..++.+|++++|||+ ++.|+.+||++||++
T Consensus 21 gk~v~G~~~v~kai~~gkaklVilA~D~~~-~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~ 84 (105)
T 3u5e_c 21 GKYTLGYKSTVKSLRQGKSKLIIIAANTPV-LRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKL 84 (105)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCS
T ss_pred CCeeECHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCc
Confidence 578999999999999999999999999998 566789999999999999 799999999999986
No 26
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-14 Score=116.39 Aligned_cols=63 Identities=21% Similarity=0.367 Sum_probs=57.2
Q ss_pred ceeeechhHHHHHH--HhcCcceEEEecCCC-ccchhhhHH-----HHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLI--EQNKAQLVVIAHDVD-PIELVVWLP-----ALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~I--ekkKAkLVVIA~Dvd-P~elv~~Lp-----aLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..|..|+++++++| +++.+.+||||.|+| |..+..|+| +||++++|||++|+|+.+||+|||+
T Consensus 34 ~~l~~G~kEt~KaL~~~k~~a~lcvLA~D~d~~~~i~~hi~~~li~alC~E~~Ip~i~V~s~k~LG~a~Gi 104 (165)
T 2kg4_A 34 RTITVGVYEAAKLLNVDPDNVVLCLLAADEDDDRDVALQIHFTLIQAFCCENDINILRVSNPGRLAELLLL 104 (165)
T ss_dssp TCEEECGGGHHHHHHHCTTTEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH
T ss_pred CCeeecHHHHHHHHhcCCCcEEEEEEeCCCCccchhhhhccHHHHHHHHHHcCCCEEEECCHHHHHHHHCC
Confidence 36789999999999 999999999999997 666555555 9999999999999999999999998
No 27
>3vi6_A 60S ribosomal protein L30; three-layer alpha/beta/ALPA; 1.59A {Homo sapiens} PDB: 2zkr_6 1ysh_C
Probab=99.32 E-value=4.1e-12 Score=98.96 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=55.8
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEE-EECCHhHHhhhhCCC
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYC-IVKGKSRLGSVNILN 190 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~-iV~sK~~LG~a~Gi~ 190 (191)
..++.|.++|+++|++|+++|||||.|++| ..+..++.+|...++|+. ++.|+.+||.+||++
T Consensus 26 Gklv~G~~~v~kaIr~gkakLVIiA~Das~-~~~~ki~~~~~~~~~~V~~~~~sk~eLG~A~Gk~ 89 (125)
T 3vi6_A 26 GKYVLGYKQTLKMIRQGKAKLVILANNCPA-LRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKY 89 (125)
T ss_dssp SEEEESHHHHHHHHHTTCCSEEEECTTSCH-HHHHHHHHHHHHTTCEEEECSSCHHHHHHHTTCS
T ss_pred CCeeeCHHHHHHHHHcCCceEEEEeCCCCH-HHHHHHHHHHHHhCCCcEEEcCCHHHHHHHhCCc
Confidence 468899999999999999999999999999 677889988776666643 699999999999986
No 28
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=98.67 E-value=5.9e-08 Score=77.98 Aligned_cols=62 Identities=16% Similarity=0.220 Sum_probs=55.4
Q ss_pred ceeeechhHHHHHHHhc--CcceEEEecCCCc------cchhhhHHHHHHhcCCCEEEECCHhHHhhhhC
Q 029589 127 IVVKYGLNHVTYLIEQN--KAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCIVKGKSRLGSVNI 188 (191)
Q Consensus 127 ~~L~~G~~~Vtk~Iekk--KAkLVVIA~DvdP------~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~G 188 (191)
..|..|+.++.+++++. .|.|+|+|.|+|. -..++.+.+||.+++||++-|++..+||+++|
T Consensus 24 dgL~~Gl~EaaKaLdk~p~~a~lCvLA~dcd~e~D~a~~~y~kLveAlC~E~~I~lIkVdd~kkLgew~G 93 (146)
T 3cg6_A 24 GCLTAGVYESAKVLNVDPDNVTFCVLAADEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVG 93 (146)
T ss_dssp TCEEESHHHHHHHHHHCGGGEEEEEEECCTGGGGCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHHHHC-
T ss_pred CCccccHHHHHHHHhcCCCeEEEEEecCCCccccchhHHHHHHHHHHHHhhcCCCeEEeCchhHHHHHhC
Confidence 46889999999999997 9999999999982 25566799999999999999999999999999
No 29
>3ffm_A Growth arrest and DNA-damage-inducible protein GADD45 gamma; beta-turn-helix, cell cycle; 2.30A {Homo sapiens}
Probab=98.50 E-value=1.9e-07 Score=76.34 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=55.9
Q ss_pred ceeeechhHHHHHHHh--cCcceEEEecCCC-ccc-----hhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLIEQ--NKAQLVVIAHDVD-PIE-----LVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~Iek--kKAkLVVIA~Dvd-P~e-----lv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..|..|+.++.+++++ ..|.|+|+|.|++ +-+ .++.+.+||.+++||++-|++..+||+++|.
T Consensus 45 dgL~~Gl~EaaKaLd~~p~~a~LCvLA~dc~~e~D~alqmy~kLVeAlC~E~~I~LIkV~d~kkLgew~G~ 115 (167)
T 3ffm_A 45 GCLTAGVYESAKVLNVDPDNVTFCVLAAGEEDEGDIALQIHFTLIQAFCCENDIDIVRVGDVQRLAAIVGA 115 (167)
T ss_dssp TCEEESHHHHHHHHHHCGGGEEEEEEECCGGGTTCHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTT
T ss_pred CCccccHHHHHHHhccCCCeEEEEEEeCCCCcccchhHHHHHHHHHHHHhhcCCCeEEeCCcchHHHHhCc
Confidence 4788999999999998 5999999999985 223 4677899999999999999999999999993
No 30
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=93.07 E-value=0.35 Score=38.66 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=52.2
Q ss_pred CceeeechhHHHHHHHhcCcceEEEecCCCcc--------------------------------------------chhh
Q 029589 126 PIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI--------------------------------------------ELVV 161 (191)
Q Consensus 126 p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~--------------------------------------------elv~ 161 (191)
+....+|+.+|.++++.|-+..++|..|..-. .++.
T Consensus 44 ~g~~~yG~~ev~~Ale~GAVetLlv~e~l~~~r~~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~~~~~e~~~~ve 123 (166)
T 3ir9_A 44 SGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSSLEVTDVTDIVD 123 (166)
T ss_dssp TTCEEESHHHHHHHHTTTCEEEEEEETTCCCEEEEEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCBEEEEEEEEHHH
T ss_pred CCcEEEcHHHHHHHHHhCCceEEEEecCccceEEEEECCCCCceeEEEeecChhhcccccccccccCccchhhhHHHHHH
Confidence 45678999999999999999999999987543 3566
Q ss_pred hHHHHHHhcCCCEEEECCHhHHhh
Q 029589 162 WLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 162 ~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
+|...++++|.-+.+|.++.+-|.
T Consensus 124 ~L~e~~~~~G~~v~ivs~~~eeG~ 147 (166)
T 3ir9_A 124 EFSELADKSNAKVVFVSTDFDEGS 147 (166)
T ss_dssp HHHHHHHHTTCEEEEECSCSHHHH
T ss_pred HHHHHHHhcCCEEEEECCCChhHH
Confidence 899999999999999999998665
No 31
>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}
Probab=91.19 E-value=1 Score=39.61 Aligned_cols=90 Identities=11% Similarity=0.006 Sum_probs=62.6
Q ss_pred HHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCccchhhhHHH
Q 029589 86 ASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPA 165 (191)
Q Consensus 86 a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~Lpa 165 (191)
..++++.+..---+++..+..+++..-.... .+.+.....|+.+|.++++.|.+..++|..| .+++..|..
T Consensus 263 ~~E~l~~~~~~l~~~~~~~e~~~l~~f~~~l------~~~~g~a~yG~~eV~~Al~~GaVetLlv~d~---rd~~~~L~e 333 (373)
T 3agk_A 263 LKEAVMKAEKVVEAQMYRDAVNAMEEFKLHL------AKGTGMIVYGEKDVEAALEMGAVKTLLIHES---REDLEEWVE 333 (373)
T ss_dssp HHHHHHHCTTCGGGHHHHHHHHHHHHHHHHH------HTTCCCEEESHHHHHHHHHTTCEEEEEEETT---CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCCcEeeCHHHHHHHHHhCCccEEEEeCC---hhHHHHHHH
Confidence 3445554333233445555555555432221 1223466899999999999999999999998 267788999
Q ss_pred HHHhcCCCEEEECCHhHHh
Q 029589 166 LCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 166 LC~k~~VPy~iV~sK~~LG 184 (191)
.+..+|--+.+|.+..+-|
T Consensus 334 ~a~~~G~~V~ivs~~~~~g 352 (373)
T 3agk_A 334 KAKSSGAQVIVVPESLAEA 352 (373)
T ss_dssp HHTTTTCEEEEECTTSTTH
T ss_pred HHHHcCCEEEEECCCCccH
Confidence 9999999999999985444
No 32
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A
Probab=87.25 E-value=4.9 Score=36.07 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=69.8
Q ss_pred ChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCC------
Q 029589 82 DKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD------ 155 (191)
Q Consensus 82 ~~~~a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~Dvd------ 155 (191)
+.+...++++.+..---+++..+..+++..-.... .+.+....+|+.+|.++++.|.+..++|..|..
T Consensus 260 ~~~gl~E~l~~~~~~l~~~k~~~e~~ll~~f~~~l------~~d~g~a~yG~~eV~~Al~~GaVetLLv~d~l~~~r~~~ 333 (437)
T 1dt9_A 260 GENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEI------SQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL 333 (437)
T ss_dssp TTHHHHHHHHHHSSTTTSHHHHHHHHHHHHHHHHH------HSSSCCEEESHHHHHHHHHSSCCSEEEEESCCCCBCCCC
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCcEEecHHHHHHHHHhCCccEEEEecCcccceEEE
Confidence 34556677777665556666666666666443221 122346689999999999999999999998865
Q ss_pred --c-----------------------------------cchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 156 --P-----------------------------------IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 156 --P-----------------------------------~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
+ ..++.+|...++++|--+.+|.+..+-|.
T Consensus 334 r~~~~g~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~d~ve~L~e~~~~~G~~V~ivs~~~e~G~ 400 (437)
T 1dt9_A 334 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGS 400 (437)
T ss_dssp ---------CCCBCTTCSSCCCCCC-----------CCCBHHHHHHHTCTTTTSCEEEECSSSHHHH
T ss_pred EcCCCCceeeeeeccccccccccccCcccCccccccccccHHHHHHHHHHHcCCEEEEECCCChhHH
Confidence 2 02355588889999999999999876664
No 33
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2
Probab=86.87 E-value=1.7 Score=38.26 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=69.4
Q ss_pred cCChhhHHHHHhhh--hcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCC-c
Q 029589 80 TLDKNLASSLFKLL--LKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD-P 156 (191)
Q Consensus 80 ~l~~~~a~~l~kl~--~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~Dvd-P 156 (191)
..+.+...++++.. ..---+++..+..+++..-.... .+. ...+|..+|.++++.|-+..++|..|.. .
T Consensus 223 ~~~~~gl~Evl~~~~v~~~L~~~k~~~E~~~l~~f~~~l------~~d--~~~YG~~eV~~Ale~GAVetLlV~d~l~rr 294 (347)
T 2qi2_A 223 RTDSGAVYEFITSADGAKLLSNERIARDKEIVDEFLVAV------KKD--MGVYGRDQTESALQMGALSDLIITDEMFRT 294 (347)
T ss_dssp SSSHHHHHHHHHSHHHHHHHTTSHHHHHHHHHHHHHHHH------HTT--CEEESHHHHHHHHHTTCEEEEEEEHHHHTS
T ss_pred CCccccHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHH------hcC--CEEEcHHHHHHHHHcCCCeEEEEecccccc
Confidence 34455566666655 33334556666666665443221 111 5789999999999999999999999975 3
Q ss_pred cchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 157 IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 157 ~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
.+ +..|...|+++|.-+.+|.+..+-|.
T Consensus 295 ~~-~~~L~e~~~~~G~~V~ivs~~~e~G~ 322 (347)
T 2qi2_A 295 ED-GRRSLSIAQTVGTRIHIVSVSNDPGQ 322 (347)
T ss_dssp HH-HHHHHHHHHHHTCEEEEECTTSHHHH
T ss_pred hh-HHHHHHHHHHcCCEEEEECCCCcchH
Confidence 23 67799999999999999999876663
No 34
>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}
Probab=86.33 E-value=3.2 Score=37.80 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=59.4
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCCCc----------------------
Q 029589 99 EDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDP---------------------- 156 (191)
Q Consensus 99 Et~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP---------------------- 156 (191)
+++..+..+++..-.+.. .+.+....+|+.+|.++++.|.+..++|..|.+-
T Consensus 282 d~k~~~E~~lle~f~~~l------~~d~g~a~YG~~eV~~Ale~GAVetLLIsD~l~~~r~~~r~~~~~~~~~~~~~~~~ 355 (441)
T 3e20_C 282 NVKYVQEKKLIQRFFDEI------SLDSGKYCFGVVDTMNALQEGAVETLLCFADLDMIRYEFKNSEGNPVITYMTKEQE 355 (441)
T ss_dssp CHHHHHHHHHHHHHHHHH------HTTCSCCCCSHHHHHHHHHSSCCSEEEEETTCCCEEC----------CCEECSCTT
T ss_pred HHHHHHHHHHHHHHHHHH------hcCCCcEEECHHHHHHHHHhCCccEEEEecccccceeEEECCCCceEEEecCcccc
Confidence 445555555555433322 1223456789999999999999999999988751
Q ss_pred -----------------------cchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 157 -----------------------IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 157 -----------------------~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
..++.+|..+++++|.-+.+|.+..+-|.
T Consensus 356 ~~~~~~~~~~c~~~g~~~~~~e~~~~ve~l~e~a~~~G~~v~~vs~~~~eG~ 407 (441)
T 3e20_C 356 EKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKDYGANLEFVSDRSQEGM 407 (441)
T ss_dssp TCCC-----------------CCEEHHHHHHHHGGGGSCCEEEECTTSHHHH
T ss_pred ccccccccccCcccCccceecchhhHHHHHHHHHHHcCCEEEEECCCCHHHH
Confidence 13555789999999999999999888775
No 35
>1x52_A Pelota homolog, CGI-17; ERF1_3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.79.3.2
Probab=85.82 E-value=1.7 Score=33.07 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=47.7
Q ss_pred CceeeechhHHHHHHHhcCcceEEEecCC----Cc---cchhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 126 PIVVKYGLNHVTYLIEQNKAQLVVIAHDV----DP---IELVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 126 p~~L~~G~~~Vtk~IekkKAkLVVIA~Dv----dP---~elv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
+....+|+.+|.++++.|-+..++|..|. || ..++. |...++++|.-+.+|.+..+-|
T Consensus 36 ~g~~~yG~~eV~~Ale~GAVetLLI~d~l~r~~d~~~~~~~~e-l~e~~~~~G~~V~ivs~~~~~G 100 (124)
T 1x52_A 36 PDRAFYGLKQVEKANEAMAIDTLLISDELFRHQDVATRSRYVR-LVDSVKENAGTVRIFSSLHVSG 100 (124)
T ss_dssp GGGEEESHHHHHHHHHTTCEEEEEEEHHHHTCSSHHHHHHHHH-HHHHHHHTTCEEEEECSSSHHH
T ss_pred CCcEEECHHHHHHHHHcCCccEEEechhhhcCCChHHHHHHHH-HHHHHHHcCCEEEEECCCCccH
Confidence 35678999999999999999999999884 22 12445 7888899999999999987666
No 36
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=83.53 E-value=1.9 Score=34.29 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=37.2
Q ss_pred chhHHHHHHHhcCcceEEEecC---CCc-cchhhhHHHHHHhcCCCEEE
Q 029589 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-IELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 132 G~~~Vtk~IekkKAkLVVIA~D---vdP-~elv~~LpaLC~k~~VPy~i 176 (191)
|-.++..+|.+|++++||---| ..| ..=...|..+|-.++|||..
T Consensus 70 G~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 70 GDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred CCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 6779999999999999999888 444 33345589999999999975
No 37
>2ohw_A YUEI protein; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.40A {Bacillus subtilis} SCOP: d.79.8.1
Probab=83.23 E-value=2.4 Score=32.91 Aligned_cols=46 Identities=9% Similarity=0.178 Sum_probs=41.4
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s 179 (191)
..++.+++++...-.|+|-.+++. +....+..+|.++||||.+|.+
T Consensus 52 ~~~~~~~l~~~~~~~l~ing~l~~-~~~~~YiklA~~~~i~fTiV~~ 97 (133)
T 2ohw_A 52 YKEAEHELKNSHNVTLLINGELQY-QSYSSYIQMASRYGVPFKIVSD 97 (133)
T ss_dssp CHHHHHHHHTCSSEEEEEETTSCH-HHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHhhCCCcEEEEcCCCCH-HHHHHHHHHHHHcCCCeEEecC
Confidence 356788999999999999999999 5667799999999999999987
No 38
>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}
Probab=83.11 E-value=3.9 Score=36.34 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=51.8
Q ss_pred CCCceeeechhHHHHHHHhcCcceEEEecCCCcc-----chhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 124 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPI-----ELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 124 k~p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~-----elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
+.+....+|..+|.++++.|-+..++|..|..-. ..+.+|...++++|--+.++.+..+-|.
T Consensus 281 ~d~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~r~~~~~l~e~v~~~Gg~V~ivs~~~e~G~ 347 (364)
T 3obw_A 281 KQPELVTYGLEQVKNAIEMGAVETVLVIEDLLSSDEQERLTIERMLEDIENKRGEVILVPKESPIYF 347 (364)
T ss_dssp TSCSSEEESHHHHHHHHHHTCEEEEEEEGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEECTTSTTHH
T ss_pred cCCCcEEECHHHHHHHHHhCCCcEEEEeccCcccccchHHHHHHHHHHHHhcCCEEEEECCCCCCch
Confidence 3345678999999999999999999999887542 3567799999999999999999876554
No 39
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}
Probab=82.83 E-value=1.6 Score=38.59 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=50.4
Q ss_pred CceeeechhHHHHHHHhcCcceEEEecCCCc---cchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 126 PIVVKYGLNHVTYLIEQNKAQLVVIAHDVDP---IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 126 p~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP---~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
+....+|..+|.++++.|-+.-++|..|..- .+.+..|...++++|--+.++.+..+-|.
T Consensus 278 ~g~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~~~~~~~~l~e~~~~~G~~v~ivs~~~e~G~ 340 (357)
T 3j15_A 278 NGLVAYGLKEVEEAVNYGAVETLLVLDELLKGELREKVEELMDAVRYSRGEVVVVSSEHEGGE 340 (357)
T ss_dssp TTTEEESTHHHHHHHHHTCEEEEEEEHHHHTSSCCHHHHHHHHHHHHTTCEEEEECSSSTTHH
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEecccccccchHHHHHHHHHHHHcCCEEEEECCCCCcch
Confidence 3456899999999999999999999987643 45677899999999999999998765553
No 40
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=82.72 E-value=2.5 Score=30.77 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=44.0
Q ss_pred eechhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHH
Q 029589 130 KYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRL 183 (191)
Q Consensus 130 ~~G~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~L 183 (191)
+.|.......++...+..|+||......+....+-..|.++|+.+.++.+..++
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~~~ 104 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLDDL 104 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHHHH
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHHHH
Confidence 346788889999999999999986544455566888999999999999998765
No 41
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=81.99 E-value=1.9 Score=33.57 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=36.9
Q ss_pred echhHHHHHHHhcCcceEEEecC---CCc-cchhhhHHHHHHhcCCCEEE
Q 029589 131 YGLNHVTYLIEQNKAQLVVIAHD---VDP-IELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 131 ~G~~~Vtk~IekkKAkLVVIA~D---vdP-~elv~~LpaLC~k~~VPy~i 176 (191)
-|-.++..+|.+|++.+||---| ..| ..=...|..+|-.++|||..
T Consensus 61 eG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 110 (134)
T 2xw6_A 61 GGDQQMGARVAEGRILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLAT 110 (134)
T ss_dssp THHHHHHHHHHTTCEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEEC
T ss_pred CCcchHHHHHHCCCccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEc
Confidence 47789999999999999999887 233 22234589999999999975
No 42
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=81.88 E-value=2.3 Score=34.70 Aligned_cols=45 Identities=20% Similarity=0.235 Sum_probs=37.0
Q ss_pred chhHHHHHHHhcCcceEEEecC---CCc-cchhhhHHHHHHhcCCCEEE
Q 029589 132 GLNHVTYLIEQNKAQLVVIAHD---VDP-IELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 132 G~~~Vtk~IekkKAkLVVIA~D---vdP-~elv~~LpaLC~k~~VPy~i 176 (191)
|-.++..+|.+|++++||-.-| ..| ..=...|..+|-.++|||+.
T Consensus 86 G~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 86 GDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAI 134 (178)
T ss_dssp HHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEES
T ss_pred CCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEe
Confidence 7779999999999999999888 444 23334589999999999975
No 43
>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*
Probab=79.08 E-value=7 Score=34.77 Aligned_cols=61 Identities=16% Similarity=0.045 Sum_probs=49.6
Q ss_pred CCCceeeechhHHHHHHHhcCcceEEEecCCC----c--cchhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 124 KKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVD----P--IELVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 124 k~p~~L~~G~~~Vtk~IekkKAkLVVIA~Dvd----P--~elv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
+.+....+|+.+|.++++.|-+..++|..|.- + ...+..|...|+++|--+.+|.+..+-|
T Consensus 293 ~d~~~a~yG~~eV~~Ale~GAVetLLV~d~l~r~~d~~~r~~v~~L~e~v~~~Gg~V~ivs~~~e~G 359 (386)
T 2vgn_A 293 KDDDKAWYGEKEVVKAAEYGAISYLLLTDKVLHSDNIAQREEYLKLMDSVESNGGKALVLSTLHSLG 359 (386)
T ss_dssp TTCSSEEESHHHHHHHHHTTCEEEEEEETTGGGSSCHHHHHHHHHHHHHHHHTTCEEEEECTTSHHH
T ss_pred cCCCcEEeCHHHHHHHHHcCCcEEEEEechhhcCCCchhhhHHHHHHHHHHHcCCEEEEECCCCcch
Confidence 33457789999999999999999999999852 1 1124678899999999999999986655
No 44
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=75.90 E-value=7.4 Score=33.06 Aligned_cols=59 Identities=17% Similarity=0.075 Sum_probs=45.2
Q ss_pred ceeeechhHHHHHHHhc-CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLIEQN-KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..|.+.|..+++.+ ...-|+++.+.... ..+..+|...++|+..+ +.+.|.++++.
T Consensus 34 ~flveG~~~V~eaL~~~~~i~~l~~~~~~~~~---~~l~~~~~~~~~~v~~v-~~~~l~~ls~~ 93 (277)
T 3nk6_A 34 TTLIEDTEPLMECIRAGVQFIEVYGSSGTPLD---PALLDLCRQREIPVRLI-DVSIVNQLFKA 93 (277)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTSCCC---HHHHHHHHHTTCCEEEE-CHHHHTTCC--
T ss_pred CEEEEeHHHHHHHHhCCCCeEEEEEeCCccCc---HHHHHHHHhcCCcEEEE-CHHHHHHhhCC
Confidence 58899999999999987 67778888887653 33667788899999887 55677776653
No 45
>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}
Probab=74.99 E-value=3.4 Score=36.62 Aligned_cols=59 Identities=19% Similarity=0.098 Sum_probs=49.7
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCccc----hhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIE----LVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP~e----lv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
....+|..+|.++++.|-+.-++|..|..-.+ .+.+|...++++|--+.++.+..+-|.
T Consensus 264 ~~a~YG~~eV~~Ale~GAVetLLIsd~l~r~~r~~~~~~~l~e~~~~~G~~v~i~S~~~e~G~ 326 (352)
T 3oby_A 264 ERVAYGLDEVREAHNYRAIEVLLVADEFLLEEREKWDVDGLLREVEESGGKVVIMSTEFEPGK 326 (352)
T ss_dssp CSEEESHHHHHHHHTTTCEEEEEEEHHHHHHHTTTSCHHHHHHHHHHTTCEEEEECTTSHHHH
T ss_pred CcEEECHHHHHHHHHcCCceEEEEeccchhcccchHHHHHHHHHHHHcCCEEEEEcCCCcchh
Confidence 45679999999999999999999998864322 567799999999999999999866554
No 46
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=74.57 E-value=10 Score=31.65 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=46.1
Q ss_pred ceeeechhHHHHHHHhc--CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLIEQN--KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..|.+.|..+++.+ ...-|+++.+.....+ ..+..+|+..++|+..+.. ..|-++++-
T Consensus 12 ~~~veG~~~V~eal~~~~~~i~~l~~~~~~~~~~~-~~l~~~~~~~~i~v~~v~~-~~l~~ls~~ 74 (253)
T 1gz0_A 12 SEMIYGIHAVQALLERAPERFQEVFILKGREDKRL-LPLIHALESQGVVIQLANR-QYLDEKSDG 74 (253)
T ss_dssp CEEEESHHHHHHHHHSCGGGEEEEEEESSCCCTTT-HHHHHHHHHHTCEEEEECS-HHHHHTTTS
T ss_pred cEEEEEHHHHHHHHhcCCCCeEEEEEECCccchhH-HHHHHHHHHCCCcEEEeCH-HHHHHHhCC
Confidence 47889999999999987 5788888887654233 3466778889999987765 667776653
No 47
>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}
Probab=73.45 E-value=6.4 Score=34.57 Aligned_cols=59 Identities=20% Similarity=0.130 Sum_probs=48.9
Q ss_pred ceeeechhHHHHHHHhcCcceEEEecCCCc------cchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 127 IVVKYGLNHVTYLIEQNKAQLVVIAHDVDP------IELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkKAkLVVIA~DvdP------~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
....+|+.+|.++++.|.+.-++|..|..- ...+..|...++.+|--+.+|.+..+-|.
T Consensus 271 g~a~yG~~eV~~Al~~GAVetLLV~d~l~r~~d~~~r~~~~~L~~~a~~~Gg~V~ivs~~~~~G~ 335 (358)
T 3agj_B 271 DTVAYTPGEVLAVARMGAVDTVLLVDTLLHSPDDAVREAVDEALRLVESMGGRVIIIPGDSPAGE 335 (358)
T ss_dssp GGEEESHHHHHHHHHHTCEEEEEEEHHHHTCSSHHHHHHHHHHHHHHHHTTCEEEEECSSSHHHH
T ss_pred CcEEECHHHHHHHHHhCCceEEEEecccccCCChhhHHHHHHHHHHHHHcCCEEEEECCCCcchh
Confidence 456799999999999999999999987532 12356789999999999999999987663
No 48
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=67.21 E-value=5.3 Score=30.49 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=33.9
Q ss_pred hHHHHHHHhcCcceEEEecCC--CccchhhhHHHHHHhcCCCEEE
Q 029589 134 NHVTYLIEQNKAQLVVIAHDV--DPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~Dv--dP~elv~~LpaLC~k~~VPy~i 176 (191)
.++..+|++|++.|||-..|- .+..=...+...|-+++|||+.
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred ccHHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 579999999999999987765 2222334588999999999975
No 49
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=65.07 E-value=14 Score=32.96 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=64.5
Q ss_pred ccccccCChhhHHHHHhhhhcCCcccHHHHHHHHHHHHHHHHcCCCcccCCCceeeechhHHHHHHHhcCcceEEEecCC
Q 029589 75 NQFTKTLDKNLASSLFKLLLKYRPEDRAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDV 154 (191)
Q Consensus 75 nqf~~~l~~~~a~~l~kl~~kyrPEt~~ekk~rl~~~a~~~a~gk~~~~k~p~~L~~G~~~Vtk~IekkKAkLVVIA~Dv 154 (191)
+-|.++|....+..++. +++-.+..+++..-.... .+.+....+|..+|.++++.|-+.-++|..|.
T Consensus 251 ~gl~Evl~~~~v~~~l~-------~~k~~~E~~lle~f~~~l------~~d~g~a~YG~~eV~~Ale~GAVetLLI~d~l 317 (390)
T 3mca_B 251 HSLNEILKDPAVESKLA-------DTKYVQEIRVLNKFYDVM------NEDDRKAWYGPNHVLKAFELGAIGELLISDSL 317 (390)
T ss_dssp GGGGTSSSCHHHHHHHT-------TSHHHHHHHHHHHHHHHH------HHCTTSEEESHHHHHHHHHTTCBSSCEEEETT
T ss_pred hhHHHHHhChhHHHHHH-------HHHHHHHHHHHHHHHHHH------hcCCCcEEECHHHHHHHHHcCCCeEEEEeccc
Confidence 44556666654444433 344444445554433221 12234678999999999999999999999876
Q ss_pred Cc----c---chhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 155 DP----I---ELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 155 dP----~---elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
-- . .++ .|...++.+|--+.++.+..+-|.
T Consensus 318 ~r~~d~~~r~~~~-~L~e~~~~~Gg~V~ivs~~~~~G~ 354 (390)
T 3mca_B 318 FRSSDIATRKKWV-SLVEGVKEINCPVYIFSSLHESGK 354 (390)
T ss_dssp CCCSCHHHHHHHH-HHHHHHHHTTCCEEEECTTSHHHH
T ss_pred ccCCChhHHHHHH-HHHHHHHhcCCEEEEECCCCCchh
Confidence 31 1 132 578889999999999999876654
No 50
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=58.48 E-value=20 Score=30.28 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=41.2
Q ss_pred ceeeechhHHHHHHHhc-CcceEEEecCCCccchhhhHHHHHHhcC-CCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLIEQN-KAQLVVIAHDVDPIELVVWLPALCRKME-IPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~Iekk-KAkLVVIA~DvdP~elv~~LpaLC~k~~-VPy~iV~sK~~LG~a~Gi 189 (191)
..+..|.+.|..+++.+ ...-|+++.+..... ...+..+|.+.+ +|+..+. .+.|.++++-
T Consensus 28 ~f~veG~~~v~eal~~~~~i~~l~~~~~~~~~~-~~~l~~~~~~~~~~~v~~v~-~~~l~~ls~~ 90 (274)
T 1ipa_A 28 RFLIEGAREIERALQAGIELEQALVWEGGLNPE-EQQVYAALGRVGRLALLEVS-EAVLKKLSVR 90 (274)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEETTCCCHH-HHHHHHCC-----CEEEEEC-HHHHHHHCCS
T ss_pred eEEEEeHHHHHHHHhCCCCeEEEEEEcCcccch-HHHHHHHHHhcCCccEEEeC-HHHHHHHhCC
Confidence 58899999999999987 577888888765422 223455677778 9987655 5667777654
No 51
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=51.92 E-value=36 Score=23.85 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=39.2
Q ss_pred hHHHHHHHhcCcceEEEecCCCccchhhhHHHHH-HhcCCCEEEECC------------HhHHhhhhCCC
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALC-RKMEIPYCIVKG------------KSRLGSVNILN 190 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC-~k~~VPy~iV~s------------K~~LG~a~Gi~ 190 (191)
..+-.++++..+.+..+-.|-|| +....+..+. -...||.+++.+ ++.|.++.|++
T Consensus 18 ~~aK~~L~~~gi~y~~idi~~d~-~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~gL~ 86 (92)
T 2lqo_A 18 LRLKTALTANRIAYDEVDIEHNR-AAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIAGLE 86 (92)
T ss_dssp HHHHHHHHHTTCCCEEEETTTCH-HHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHhcCCceEEEEcCCCH-HHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhcCCc
Confidence 45667888888888888888788 4444455554 256799998854 34577777775
No 52
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=43.78 E-value=33 Score=27.69 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=32.7
Q ss_pred hhHHHHHHHh--cCcceEEEecCCCcc-------chhhhHHHHHHhcCCCEEEECCHhH
Q 029589 133 LNHVTYLIEQ--NKAQLVVIAHDVDPI-------ELVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 133 ~~~Vtk~Iek--kKAkLVVIA~DvdP~-------elv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
+..+...+.. .++.+||++.|.-.. .+..++-.+.+..++|+..+.|--+
T Consensus 53 l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~GNHD 111 (330)
T 3ib7_A 53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHD 111 (330)
T ss_dssp HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTS
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCCCCC
Confidence 4455666665 789999999997431 1223344444556999999887655
No 53
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=42.51 E-value=40 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=22.3
Q ss_pred cCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhh
Q 029589 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGS 185 (191)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~ 185 (191)
..+.+|++..|++..+-...+.....++++|++++.+|.+|-.
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 4555566665655433333333333445666666666666543
No 54
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=41.82 E-value=58 Score=23.89 Aligned_cols=46 Identities=11% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHhcCcc-eEEEecCCCccchhhhHHHHHHhcCC--CEEEECC-HhHHhhhhCC
Q 029589 139 LIEQNKAQ-LVVIAHDVDPIELVVWLPALCRKMEI--PYCIVKG-KSRLGSVNIL 189 (191)
Q Consensus 139 ~IekkKAk-LVVIA~DvdP~elv~~LpaLC~k~~V--Py~iV~s-K~~LG~a~Gi 189 (191)
..+...+. +|.|+.| ++ + -+.++++++++ +|-++.+ ..+++++.|+
T Consensus 65 ~~~~~~v~~vv~Is~d-~~-~---~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 114 (162)
T 1tp9_A 65 ELKSKGVTEILCISVN-DP-F---VMKAWAKSYPENKHVKFLADGSATYTHALGL 114 (162)
T ss_dssp HHHHTTCCCEEEEESS-CH-H---HHHHHHHTCTTCSSEEEEECTTSHHHHHTTC
T ss_pred HHHHCCCCEEEEEECC-CH-H---HHHHHHHhcCCCCCeEEEECCCchHHHHcCc
Confidence 33445677 8888776 23 2 25678888888 7776544 4567777775
No 55
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=41.03 E-value=34 Score=24.81 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=20.2
Q ss_pred CcceEEEecCCCccch---hhhHHHHHHhcCCCEEEECCHh
Q 029589 144 KAQLVVIAHDVDPIEL---VVWLPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 144 KAkLVVIA~DvdP~el---v~~LpaLC~k~~VPy~iV~sK~ 181 (191)
..-++++++.+|-.+- ......+++.+++||+.+..+.
T Consensus 108 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (165)
T 2wji_A 108 GANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAK 148 (165)
T ss_dssp TCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred CCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCC
Confidence 4556666666553211 1123556666677776655443
No 56
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=40.77 E-value=24 Score=28.71 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=32.6
Q ss_pred HHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhh
Q 029589 140 IEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSV 186 (191)
Q Consensus 140 IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a 186 (191)
+....+..|++..|++..+-...+.....++++|++++-+|.++-..
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 33456777777777776665555666677778888888888776543
No 57
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=38.73 E-value=54 Score=24.64 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHhcCcceEEEecCCCccc-----hhhhHHHHHHhcCCCEEEECCHhH
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIE-----LVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~e-----lv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
.+...++..++.+||++.|..... ...++..| .+.++|+.+|.|--+
T Consensus 23 ~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~~~~~~l-~~~~~pv~~v~GNHD 74 (228)
T 1uf3_A 23 KFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRIL-SEAHLPTAYVPGPQD 74 (228)
T ss_dssp HHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHH-GGGCSCEEEECCTTS
T ss_pred HHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHH-HhcCCcEEEECCCCC
Confidence 334445555788999999974321 22233334 345789888877543
No 58
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=38.65 E-value=25 Score=28.77 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=22.0
Q ss_pred cCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
..+.++|+..|++..+-...+.....++++|+++|.+|.+|-
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIA 125 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred cCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccch
Confidence 445555555555544444444444455566666666655543
No 59
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=35.07 E-value=44 Score=27.54 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=8.8
Q ss_pred HHHHHhcCCCEEEECCH
Q 029589 164 PALCRKMEIPYCIVKGK 180 (191)
Q Consensus 164 paLC~k~~VPy~iV~sK 180 (191)
..|++..|+||+.+..+
T Consensus 130 ~~l~~~lg~~vi~~SA~ 146 (272)
T 3b1v_A 130 DKLSYHLGVPVVATSAL 146 (272)
T ss_dssp HHHHHHHTSCEEECBTT
T ss_pred HHHHHHcCCCEEEEEcc
Confidence 44555555555554443
No 60
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=34.69 E-value=33 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=33.5
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
+-+....+++..+.++|||++... .+++.+-+..+||++-+
T Consensus 88 l~~~~~~L~~~Gad~IVIaCNTah----~~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 88 LERYLHMLEDAGAECIVIPCNTAH----YWFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHTTCSEEECSCSGGG----GGHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHH----HHHHHHHHHCCCCEEcc
Confidence 556677788889999999999765 26899999999998754
No 61
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=33.75 E-value=27 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=31.3
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
+....+++..++++|||++... ..+++.+-+..+||++-+
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~---~~al~~lr~~~~iPvigi 97 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTAT---AAALYDIREKLDIPVIGV 97 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHH---HHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHhcCCCEEee
Confidence 4455677788999999999755 124789999999999874
No 62
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=32.34 E-value=1.7e+02 Score=22.57 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=26.4
Q ss_pred CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC
Q 029589 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s 179 (191)
....|.+-+...+.+...++-.+|+++|||+.++..
T Consensus 70 ~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~ 105 (215)
T 1sur_A 70 DIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRA 105 (215)
T ss_dssp TCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 445555555554446678999999999999998854
No 63
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=31.75 E-value=60 Score=27.82 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=31.0
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccc---------hhhhHHHHHHhcCCCEEEECCHhH
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIE---------LVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~e---------lv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
+..+...+...++.+||+|.|+-... +..+|-.|+ ..++|++.|.|--+
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~-~~~~pv~~v~GNHD 106 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLH-ENNIKVYIVAGNHE 106 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHH-HTTCEEEECCCGGG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH-hcCCcEEEEcCCCC
Confidence 44566667778899999999973222 122222232 23799988887655
No 64
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=31.71 E-value=25 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhc-CCCEEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKM-EIPYCIV 177 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~-~VPy~iV 177 (191)
+....+++..++++|||+|... ..+++.+-+.. +||++-+
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~---~~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTIS---AIAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHH---HHHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHHCCCCEEEEeCCChH---HHHHHHHHHhcCCCCEEec
Confidence 4555677788999999999755 23578898888 8999863
No 65
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=31.47 E-value=24 Score=29.87 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
+....+++..++++|||+|... ...++.+-+..+||++-+
T Consensus 77 ~~~~~L~~~g~d~IVIACNTa~---~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 77 EALDFFEQFQIDMLIIACNTAS---AYALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHHHHHTTSCCSEEEECCHHHH---HHSHHHHHHHCSSCEECS
T ss_pred HHHHHHHHCCCCEEEEeCCChh---HHHHHHHHHhcCCCEEcC
Confidence 4456777889999999999654 123788999999999864
No 66
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=31.43 E-value=24 Score=24.87 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=19.6
Q ss_pred CcceEEEecCCCc--cchhhhHHHHHHhcCCCEEEECCHhHH
Q 029589 144 KAQLVVIAHDVDP--IELVVWLPALCRKMEIPYCIVKGKSRL 183 (191)
Q Consensus 144 KAkLVVIA~DvdP--~elv~~LpaLC~k~~VPy~iV~sK~~L 183 (191)
.+..+++..|++. .+...++-.++...++|+++|.+|.+|
T Consensus 79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDD 120 (161)
T ss_dssp TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCS
T ss_pred hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccc
Confidence 3444444444432 122233444555556666666666554
No 67
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=31.38 E-value=1e+02 Score=21.75 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=24.6
Q ss_pred CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCH----hHHhhhhCC
Q 029589 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK----SRLGSVNIL 189 (191)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK----~~LG~a~Gi 189 (191)
.+.+|.|..|-+..+. ..+...++++++++..+.+. .++.+..|+
T Consensus 61 ~~~vv~vs~d~~~d~~-~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~v 109 (164)
T 2ggt_A 61 DLTPLFISIDPERDTK-EAIANYVKEFSPKLVGLTGTREEVDQVARAYRV 109 (164)
T ss_dssp CEEEEEEESCTTTCCH-HHHHHHHHTTCSSCEEEECCHHHHHHHHHTTTC
T ss_pred cEEEEEEEeCCCCCCH-HHHHHHHHHcCCCeEEEeCCHHHHHHHHHhcCe
Confidence 4555555555322122 33567778888887776332 235555554
No 68
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=31.26 E-value=37 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=8.8
Q ss_pred HHHHHhcCCCEEEECCH
Q 029589 164 PALCRKMEIPYCIVKGK 180 (191)
Q Consensus 164 paLC~k~~VPy~iV~sK 180 (191)
-..+++.|++++.+..+
T Consensus 135 ~~~~~~~g~~~~~~SA~ 151 (302)
T 2yv5_A 135 ISIYRDAGYDVLKVSAK 151 (302)
T ss_dssp HHHHHHTTCEEEECCTT
T ss_pred HHHHHHCCCeEEEEECC
Confidence 34455556665555443
No 69
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=30.03 E-value=88 Score=22.92 Aligned_cols=46 Identities=11% Similarity=0.239 Sum_probs=29.8
Q ss_pred hhHHHHHHHhcCcceEEEecCCCc-------cchhhhHHHHHHhcCCCEEEEC
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDP-------IELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP-------~elv~~LpaLC~k~~VPy~iV~ 178 (191)
+..+...++...+++|++..-..+ .++-..+..+|++++|+|+.+.
T Consensus 88 l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~~iD~~ 140 (190)
T 1ivn_A 88 LRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFF 140 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCCEECCT
T ss_pred HHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCeEEccH
Confidence 344556666656777777532222 2344567889999999999864
No 70
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=30.00 E-value=80 Score=26.03 Aligned_cols=54 Identities=2% Similarity=0.109 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCcceEEEe-cC---------CCccch---hhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 134 NHVTYLIEQNKAQLVVIA-HD---------VDPIEL---VVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA-~D---------vdP~el---v~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..+++.| +.+|.+= .| .+..++ ...+..+|+++++|+++ .+..+|-..+|.
T Consensus 47 ~~~~~al~~G-v~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liI-nd~~~lA~~~gA 113 (243)
T 3o63_A 47 QFAEAALAGG-VDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAV-NDRADIARAAGA 113 (243)
T ss_dssp HHHHHHHHTT-CSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEE-ESCHHHHHHHTC
T ss_pred HHHHHHHHCC-CCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEE-eCHHHHHHHhCC
Confidence 4555666655 7777773 34 233333 35578999999999755 566677666664
No 71
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=29.22 E-value=72 Score=23.40 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=33.1
Q ss_pred eeee-chhHH--HHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEEC
Q 029589 128 VVKY-GLNHV--TYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 128 ~L~~-G~~~V--tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~ 178 (191)
.+.. |..+- ..+++--.+..+||+.+..|.+- +..+|+++|||+....
T Consensus 55 l~I~~G~r~~~~l~a~~~~~~~~iIlt~g~~~~~~---i~~~A~~~~ipvl~t~ 105 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTALEMPNVRCLILTGNLEPVQL---VLTKAEERGVPVILTG 105 (139)
T ss_dssp EEEEETTCHHHHHHHTTCTTEEEEEEETTCCCCHH---HHHHHHHHTCCEEECS
T ss_pred EEEEcCCHHHHHHHHHhCCCCcEEEEcCCCCCCHH---HHHHHHHCCCeEEEEC
Confidence 3444 65543 23343146889999999888555 3489999999998766
No 72
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=28.99 E-value=1e+02 Score=25.57 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=25.8
Q ss_pred hHHHHHHHhcCcceEEEecCCCcc------chhhhHHHHHH--hcCCCEEEECCHh
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPI------ELVVWLPALCR--KMEIPYCIVKGKS 181 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~------elv~~LpaLC~--k~~VPy~iV~sK~ 181 (191)
..+...+...++.+||+|.|+-.. .+..+...|.+ +.++|+.+|.|--
T Consensus 30 ~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GNH 85 (333)
T 1ii7_A 30 KNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNH 85 (333)
T ss_dssp HHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTT
T ss_pred HHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCcC
Confidence 445556666778888888886321 11111111211 2367877776654
No 73
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=28.89 E-value=89 Score=25.89 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=28.3
Q ss_pred hhHHHHHHHhcCcceEEEecC-CC----cc-c----hhhhHHHHHHhcCCCEEEECCHhH
Q 029589 133 LNHVTYLIEQNKAQLVVIAHD-VD----PI-E----LVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~D-vd----P~-e----lv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
+..+...++..++.+||||.| +- |. + ...+|-.|... +|+++|.|--+
T Consensus 50 l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~--~pv~~i~GNHD 107 (336)
T 2q8u_A 50 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNHD 107 (336)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHH--SCEEECCC---
T ss_pred HHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhc--CCEEEECCCCC
Confidence 455666677778899999999 42 21 1 23344444433 88888877544
No 74
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=28.41 E-value=1e+02 Score=23.77 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=18.3
Q ss_pred hhHHHHHHHhcCcceEEEecCCCc
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDP 156 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP 156 (191)
+..+...++..++.+||++.|...
T Consensus 21 ~~~~l~~~~~~~~D~vi~~GDl~~ 44 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVGNILK 44 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 345566666678999999999754
No 75
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=28.33 E-value=79 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=31.5
Q ss_pred hhHHHHHHHhcCcceEEEec--CCCccchhhhHHHHHHhcCCCEEEECCH
Q 029589 133 LNHVTYLIEQNKAQLVVIAH--DVDPIELVVWLPALCRKMEIPYCIVKGK 180 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~--DvdP~elv~~LpaLC~k~~VPy~iV~sK 180 (191)
...+..++...+.++|++.+ +-.+.++ .-|-.+|+++|+.++. +.-
T Consensus 161 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~i~~l~~~~~~~li~-De~ 208 (425)
T 3ecd_A 161 YDQVEALAQQHKPSLIIAGFSAYPRKLDF-ARFRAIADSVGAKLMV-DMA 208 (425)
T ss_dssp HHHHHHHHHHHCCSEEEEECSCCCSCCCH-HHHHHHHHHHTCEEEE-ECG
T ss_pred HHHHHHHHhhcCCcEEEEccccCCCcCCH-HHHHHHHHHcCCEEEE-ECc
Confidence 45677788766778888873 3233344 4589999999997754 443
No 76
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=28.23 E-value=75 Score=27.28 Aligned_cols=48 Identities=21% Similarity=0.414 Sum_probs=31.1
Q ss_pred hhHHHHHHHhcCcceEEEecCCC-cc---------chhhhHHHHHHhcCCCEEEECCHhH
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVD-PI---------ELVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~Dvd-P~---------elv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
+..+...++..++.+||||.|+- .. .+..+|..|... +|+++|.|--+
T Consensus 32 l~~l~~~~~~~~~D~vliaGDl~hd~~~~~~~~~~~~~~~l~~l~~~--~~v~~i~GNHD 89 (379)
T 3tho_B 32 LDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRT--APVVVLPGNQD 89 (379)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCBSCSSSCCHHHHHHHHHHHHHHHHH--SCEEECCCTTS
T ss_pred HHHHHHHHHhcCCCEEEECCCccccCCCCCHHHHHHHHHHHHHHHhC--CCEEEEcCCCc
Confidence 45566677778888999999986 21 123344445433 88888877544
No 77
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=28.17 E-value=68 Score=26.73 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.9
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEEC
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~ 178 (191)
+.++.+.|+..++..||.-.-++| .+...|-.+|++.|+|+..+.
T Consensus 201 l~~l~~~ik~~~v~~if~e~~~~~-~~~~~l~~~a~~~g~~v~~l~ 245 (282)
T 3mfq_A 201 MIETVNLIIDHNIKAIFTESTTNP-ERMKKLQEAVKAKGGQVEVVT 245 (282)
T ss_dssp HHHHHHHHHHHTCCEEECBTTSCT-HHHHHHHHHHHTTSCCCEEET
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCh-HHHHHHHHHHHhcCCceEEec
Confidence 345677788889999988777777 566667788999999988764
No 78
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=28.04 E-value=85 Score=25.30 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=28.7
Q ss_pred eeeec----hhHHHHHHHhcC--cceEEEecCCCccchhhhHHHHHHhcCCCEEEEC
Q 029589 128 VVKYG----LNHVTYLIEQNK--AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 128 ~L~~G----~~~Vtk~IekkK--AkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~ 178 (191)
+|.+| +..+..+++++. +.+|.+-.|-+. ...-..|+++|||+..+.
T Consensus 5 vl~Sg~gsnl~ali~~~~~~~~~~~i~~Vis~~~~----~~~~~~A~~~gIp~~~~~ 57 (212)
T 1jkx_A 5 VLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKAD----AFGLERARQAGIATHTLI 57 (212)
T ss_dssp EEESSCCHHHHHHHHHHHTTSSSSEEEEEEESCTT----CHHHHHHHHTTCEEEECC
T ss_pred EEEECCcHHHHHHHHHHHcCCCCceEEEEEeCCCc----hHHHHHHHHcCCcEEEeC
Confidence 45566 444555566664 455544444322 124678999999998864
No 79
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=27.76 E-value=98 Score=20.70 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=31.1
Q ss_pred hHHHHHHHhcCcceEEEecCCCccchhhhHHHHHH--hcCCCEEEECCH
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCR--KMEIPYCIVKGK 180 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~--k~~VPy~iV~sK 180 (191)
..+..+++...+.+..+=-|.|+ +....|-.+.- ...||.++|++.
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~~-~~~~~l~~~~g~~~~~vP~ifi~g~ 69 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQDN-ALRDEMRTLAGNPKATPPQIVNGNH 69 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSCH-HHHHHHHHHTTCTTCCSCEEEETTE
T ss_pred HHHHHHHHHCCCceEEEECCCCH-HHHHHHHHHhCCCCCCCCEEEECCE
Confidence 45666777777777766666555 44455666655 568999999875
No 80
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=27.44 E-value=45 Score=26.47 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=30.2
Q ss_pred hHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
-+..+.+++..+..++||++... .++..+-+..+||++-+
T Consensus 63 ~~~~~~L~~~g~d~iviaCnTa~----~~~~~l~~~~~iPvi~i 102 (226)
T 2zsk_A 63 INAAKALERAGAELIAFAANTPH----LVFDDVQREVNVPMVSI 102 (226)
T ss_dssp HHHHHHHHHHTCSEEEESSSGGG----GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHHcCCCEEEECCCcHH----HHHHHHHHhCCCCEecc
Confidence 34455667778999999999766 34688888889998754
No 81
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=27.39 E-value=75 Score=22.99 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=20.1
Q ss_pred cCcceEEEecCCCccc---hhhhHHHHHHhcCCCEEEECCHh
Q 029589 143 NKAQLVVIAHDVDPIE---LVVWLPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 143 kKAkLVVIA~DvdP~e---lv~~LpaLC~k~~VPy~iV~sK~ 181 (191)
....++++++-+|..+ +...+..+++..++||+.+..+.
T Consensus 111 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (188)
T 2wjg_A 111 MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAK 152 (188)
T ss_dssp TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecC
Confidence 3445555655444321 11234566666677776665443
No 82
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=27.00 E-value=2e+02 Score=24.13 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=40.8
Q ss_pred ceeeechhHHHHHHHhcC-cceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 127 IVVKYGLNHVTYLIEQNK-AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 127 ~~L~~G~~~Vtk~IekkK-AkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..|.+.|..+++.+. ..-|+++.+..... .+..++...++|+..+ +...|.++++.
T Consensus 40 ~f~veG~~~V~eal~~~~~i~~l~~~~~~~~~~---~~~~l~~~~~~~v~~v-~~~~l~~ls~~ 99 (287)
T 1x7o_A 40 EFLVMGVRPISLAVEHGWPVRTLLYDGQRELSK---WARELLRTVRTEQIAM-APDLLMELGEK 99 (287)
T ss_dssp EEEEESHHHHHHHHHTTCCEEEEEEESSCCCCH---HHHHHHHHSCSEEEEE-CHHHHTTSSCS
T ss_pred cEEEEeHHHHHHHHhCCCCeEEEEEecCcccch---hHHHHHHHcCCcEEEe-CHHHHHHHhCC
Confidence 588999999999999875 67788888764311 1344444445888665 45677777654
No 83
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=26.82 E-value=42 Score=27.86 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=30.5
Q ss_pred HHHHHHHh-cCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 135 HVTYLIEQ-NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 135 ~Vtk~Iek-kKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
++...+++ ..++++|||++.++ . ..+..+-+..+||++-+
T Consensus 56 ~~~~~L~~~~g~d~iViACNTas-~--~~l~~lr~~~~iPVigi 96 (272)
T 1zuw_A 56 ELTNYLLENHHIKMLVIACNTAT-A--IALDDIQRSVGIPVVGV 96 (272)
T ss_dssp HHHHHHHHHSCCSEEEECCHHHH-H--HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHhhcCCCEEEEeCchhh-H--HHHHHHHHHCCCCEEcc
Confidence 44556666 78999999999765 1 24788888899999864
No 84
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=26.73 E-value=27 Score=26.35 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=21.4
Q ss_pred ccccccccCChhhHHHHHhhhhcCCccc
Q 029589 73 ALNQFTKTLDKNLASSLFKLLLKYRPED 100 (191)
Q Consensus 73 ainqf~~~l~~~~a~~l~kl~~kyrPEt 100 (191)
.|+-|+. +......+..|+|.|+|+.
T Consensus 27 ~V~nFs~--sw~DG~af~aLih~~~P~l 52 (128)
T 2d87_A 27 DIQNFSS--SWSDGMAFCALVHNFFPEA 52 (128)
T ss_dssp CCSCTTT--TTTSSHHHHHHHHHHCTTT
T ss_pred CCCCccc--cccccHHHHHHHHHHCcCc
Confidence 3889985 6677788999999999974
No 85
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=26.73 E-value=83 Score=23.56 Aligned_cols=44 Identities=7% Similarity=0.001 Sum_probs=28.4
Q ss_pred HhcCc-ceEEEecCCCccchhhhHHHHHHhcCCC--EEEEC-CHhHHhhhhCC
Q 029589 141 EQNKA-QLVVIAHDVDPIELVVWLPALCRKMEIP--YCIVK-GKSRLGSVNIL 189 (191)
Q Consensus 141 ekkKA-kLVVIA~DvdP~elv~~LpaLC~k~~VP--y~iV~-sK~~LG~a~Gi 189 (191)
+...+ .+|.|+.| ++ + -+.+++++++++ |-++. ...+++++.|+
T Consensus 63 ~~~gv~~vv~Is~d-~~-~---~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv 110 (167)
T 2wfc_A 63 HGKGVDIIACMAVN-DS-F---VMDAWGKAHGADDKVQMLADPGGAFTKAVDM 110 (167)
T ss_dssp HHTTCCEEEEEESS-CH-H---HHHHHHHHTTCTTTSEEEECTTSHHHHHTTC
T ss_pred HHCCCCEEEEEeCC-CH-H---HHHHHHHhcCCCcceEEEECCCCcHHHHcCC
Confidence 34456 77777766 23 2 256788888888 65544 45677777775
No 86
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=26.42 E-value=81 Score=28.30 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=19.1
Q ss_pred hhHHHHHHHhcCcceEEEecCCCc
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDP 156 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP 156 (191)
+..+...+...++.+||||.|+-.
T Consensus 41 l~~lv~~~~~~~~D~VliaGDLfd 64 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGDIFH 64 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCBS
T ss_pred HHHHHHHHHhcCCCEEEEcCcccc
Confidence 456777777889999999999743
No 87
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=26.30 E-value=49 Score=23.97 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=8.7
Q ss_pred HHHhcCCCEEEECCHhHH
Q 029589 166 LCRKMEIPYCIVKGKSRL 183 (191)
Q Consensus 166 LC~k~~VPy~iV~sK~~L 183 (191)
+....++|+++|.+|.+|
T Consensus 128 ~~~~~~~p~i~v~nK~Dl 145 (195)
T 3pqc_A 128 WMKSLNIPFTIVLTKMDK 145 (195)
T ss_dssp HHHHTTCCEEEEEECGGG
T ss_pred HHHHcCCCEEEEEEChhc
Confidence 334445555555555443
No 88
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=26.17 E-value=34 Score=24.83 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=9.1
Q ss_pred HHHHHHhcCC-CEEEECCH
Q 029589 163 LPALCRKMEI-PYCIVKGK 180 (191)
Q Consensus 163 LpaLC~k~~V-Py~iV~sK 180 (191)
+..+|+.+++ +|+.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~ 174 (198)
T 3t1o_A 156 VRAVVDPEGKFPVLEAVAT 174 (198)
T ss_dssp HHHHHCTTCCSCEEECBGG
T ss_pred HHHHHHhcCCceEEEEecC
Confidence 4455555555 55554443
No 89
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=26.04 E-value=93 Score=25.52 Aligned_cols=43 Identities=5% Similarity=0.195 Sum_probs=30.0
Q ss_pred hhHHHHHHHhcCcceEEEecCCCc--cchhhhHHHHHHhcCCCEEE
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDP--IELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP--~elv~~LpaLC~k~~VPy~i 176 (191)
...+.+++...+..+|++.+-..| .++ .-|-.+|+++|+.++.
T Consensus 158 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~l~~l~~~~~~~li~ 202 (420)
T 3gbx_A 158 YDEMAKLAKEHKPKMIIGGFSAYSGVVDW-AKMREIADSIGAYLFV 202 (420)
T ss_dssp HHHHHHHHHHHCCSEEEECCTTCCSCCCH-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHhcCCeEEEEecCccCCccCH-HHHHHHHHHcCCEEEE
Confidence 467778888777889988542222 233 3478999999997754
No 90
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=25.45 E-value=94 Score=22.20 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=26.3
Q ss_pred HHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC-HhHHhhhhCC
Q 029589 139 LIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG-KSRLGSVNIL 189 (191)
Q Consensus 139 ~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s-K~~LG~a~Gi 189 (191)
......+.+|.|..| ++.+ +...+++++++|.++.+ ..++.+..|+
T Consensus 64 ~~~~~~~~vv~vs~d-~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~v 110 (163)
T 3gkn_A 64 EFDKAGAKILGVSRD-SVKS----HDNFCAKQGFAFPLVSDGDEALCRAFDV 110 (163)
T ss_dssp HHHHTTCEEEEEESS-CHHH----HHHHHHHHCCSSCEEECTTCHHHHHTTC
T ss_pred HHHHCCCEEEEEeCC-CHHH----HHHHHHHhCCCceEEECCcHHHHHHhCC
Confidence 333444667777766 3322 45567777777765543 3456666654
No 91
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=25.04 E-value=1e+02 Score=22.20 Aligned_cols=44 Identities=5% Similarity=-0.038 Sum_probs=29.4
Q ss_pred HHHHHHhcCcceEEEecCCCc-------cchhhhHHHHHHhcCCCEEEECC
Q 029589 136 VTYLIEQNKAQLVVIAHDVDP-------IELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 136 Vtk~IekkKAkLVVIA~DvdP-------~elv~~LpaLC~k~~VPy~iV~s 179 (191)
+...++...+.+|++..-.-| .++-..+..+|++++++|+....
T Consensus 95 ~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~~vd~~~ 145 (185)
T 3hp4_A 95 LVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAHLMNFFM 145 (185)
T ss_dssp HHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCEEECCTT
T ss_pred HHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCEEEcchh
Confidence 455566667788777632222 24456788999999999987653
No 92
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=24.95 E-value=1.1e+02 Score=22.41 Aligned_cols=45 Identities=7% Similarity=0.201 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCcceEEEec---CCCc--------cchhhhHHHHHHhcCCCEEEEC
Q 029589 134 NHVTYLIEQNKAQLVVIAH---DVDP--------IELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~---DvdP--------~elv~~LpaLC~k~~VPy~iV~ 178 (191)
..+...++...+.+|++.- .... .++...+..+|.+++|+|+.+.
T Consensus 120 ~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~~vD~~ 175 (216)
T 3rjt_A 120 RHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQ 175 (216)
T ss_dssp HHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCCEECHH
T ss_pred HHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCeEEEcH
Confidence 3344555556788888852 1111 1245667888999999998753
No 93
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=24.40 E-value=60 Score=25.54 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..+++.|---+-+-..|.++.++...+..+|+.+++++++ .+..++-..+|.
T Consensus 17 ~~~~~a~~~Gv~~v~lr~k~~~~~~~~~~i~~l~~~~~~~liv-nd~~~~A~~~ga 71 (210)
T 3ceu_A 17 KIITALFEEGLDILHLRKPETPAMYSERLLTLIPEKYHRRIVT-HEHFYLKEEFNL 71 (210)
T ss_dssp HHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCGGGGGGEEE-SSCTTHHHHTTC
T ss_pred HHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCeEEE-eCCHHHHHHcCC
Confidence 3444555555332333334455555556677778888887754 555566555554
No 94
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=24.17 E-value=53 Score=26.61 Aligned_cols=41 Identities=10% Similarity=0.181 Sum_probs=31.1
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
+.+....+++..+.++|||++... .+++.+-+..+||++-+
T Consensus 65 l~~~~~~L~~~g~~~iviaCNTa~----~~~~~l~~~~~iPvi~i 105 (231)
T 3ojc_A 65 LSNAAISLKHAGAEVIVVCTNTMH----KVADDIEAACGLPLLHI 105 (231)
T ss_dssp HHHHHHHHHHHTCCEEEECSSGGG----GGHHHHHHHHCSCBCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCchH----HHHHHHHHhCCCCEecc
Confidence 345556777889999999999644 24688888889998754
No 95
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=24.09 E-value=1.2e+02 Score=21.01 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=32.1
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCH
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 180 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK 180 (191)
...+...++...+.+..+-.|-|+ ++...|..+.....||.+++.++
T Consensus 33 C~~ak~~L~~~~i~~~~vdi~~~~-~~~~~l~~~~g~~~vP~ifi~g~ 79 (109)
T 1wik_A 33 SKQILEILNSTGVEYETFDILEDE-EVRQGLKTFSNWPTYPQLYVRGD 79 (109)
T ss_dssp HHHHHHHHHHTCSCEEEEESSSCH-HHHHHHHHHHSCCSSCEEECSSS
T ss_pred HHHHHHHHHHcCCCeEEEECCCCH-HHHHHHHHHhCCCCCCEEEECCE
Confidence 456777778877887777666555 44344555556678999998875
No 96
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=24.07 E-value=55 Score=24.63 Aligned_cols=39 Identities=13% Similarity=-0.007 Sum_probs=20.3
Q ss_pred cceEEEecCCCc--cchhhhHHHHHHhcCCCEEEECCHhHH
Q 029589 145 AQLVVIAHDVDP--IELVVWLPALCRKMEIPYCIVKGKSRL 183 (191)
Q Consensus 145 AkLVVIA~DvdP--~elv~~LpaLC~k~~VPy~iV~sK~~L 183 (191)
+.+|++..|++. .+....+-.++...++|+++|-+|.+|
T Consensus 116 ~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 116 LCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK 156 (223)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred cCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 344555555542 122223344555567777777776665
No 97
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=24.07 E-value=1e+02 Score=21.25 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCcceEEEecCCCccchhhhHHHHH-HhcCCCEEEECCH
Q 029589 134 NHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALC-RKMEIPYCIVKGK 180 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC-~k~~VPy~iV~sK 180 (191)
..+...++...+.+..+--|-++ +....|..+. ....||.+++.++
T Consensus 30 ~~ak~~L~~~~i~y~~idI~~~~-~~~~~l~~~~~g~~~vP~ifi~g~ 76 (99)
T 3qmx_A 30 MRALALLKRKGVEFQEYCIDGDN-EAREAMAARANGKRSLPQIFIDDQ 76 (99)
T ss_dssp HHHHHHHHHHTCCCEEEECTTCH-HHHHHHHHHTTTCCCSCEEEETTE
T ss_pred HHHHHHHHHCCCCCEEEEcCCCH-HHHHHHHHHhCCCCCCCEEEECCE
Confidence 34556677777777777666666 4444455555 6678999999885
No 98
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=23.89 E-value=99 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.144 Sum_probs=28.6
Q ss_pred eeeech----hHHHHHHHhc--CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC
Q 029589 128 VVKYGL----NHVTYLIEQN--KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 128 ~L~~G~----~~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s 179 (191)
.+.+|. ..+..++.++ .+.+|.+-.|-+. ..+-.+|+++|||+..+..
T Consensus 8 vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~----~~v~~~A~~~gIp~~~~~~ 61 (212)
T 3av3_A 8 VFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPG----AKVIERAARENVPAFVFSP 61 (212)
T ss_dssp EECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTT----CHHHHHHHHTTCCEEECCG
T ss_pred EEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCC----cHHHHHHHHcCCCEEEeCc
Confidence 455563 3455566666 4566544444221 1356789999999987543
No 99
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=23.87 E-value=56 Score=22.88 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=10.6
Q ss_pred HHHHHHhcCCCEEEECCHh
Q 029589 163 LPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 163 LpaLC~k~~VPy~iV~sK~ 181 (191)
...+|..++++|+.+..+.
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1ek0_A 134 GEKLAEEKGLLFFETSAKT 152 (170)
T ss_dssp HHHHHHHHTCEEEECCTTT
T ss_pred HHHHHHHcCCEEEEEeCCC
Confidence 3455566666666555443
No 100
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=23.83 E-value=56 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=21.3
Q ss_pred ccccccccCChhhHHHHHhhhhcCCcc
Q 029589 73 ALNQFTKTLDKNLASSLFKLLLKYRPE 99 (191)
Q Consensus 73 ainqf~~~l~~~~a~~l~kl~~kyrPE 99 (191)
.|+-|+. +-.....+..|+|.|+|+
T Consensus 29 ~v~nFs~--sw~DG~af~aLih~~~P~ 53 (121)
T 2d88_A 29 NVTDLTM--SWKSGLALCAIIHRYRPD 53 (121)
T ss_dssp CCCCSSH--HHHTSHHHHHHHHHHCTT
T ss_pred CCCCchh--hccccHHHHHHHHHhCcC
Confidence 3889985 677788899999999997
No 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.77 E-value=56 Score=22.91 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=19.5
Q ss_pred CcceEEEecCCCccc----hhhhHHHHHHhcCCCEEEECCHh
Q 029589 144 KAQLVVIAHDVDPIE----LVVWLPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 144 KAkLVVIA~DvdP~e----lv~~LpaLC~k~~VPy~iV~sK~ 181 (191)
...+++++.=+|-.+ ....+..+|+.+++||+.+..+.
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKE 150 (168)
T ss_dssp SCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred CCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 445555555444221 12234566666677766665544
No 102
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.74 E-value=49 Score=27.26 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=30.3
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
+....+++..++++|||++.++ . .++..+-+..+||++-+
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas-~--~~l~~lr~~~~iPvigi 95 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTAT-A--VVLEEMQKQLPIPVVGV 95 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHH-H--HHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCchhh-H--HHHHHHHHhCCCCEEee
Confidence 4445666778999999999765 1 24788888899999874
No 103
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=23.67 E-value=1.5e+02 Score=20.81 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=23.8
Q ss_pred cceEEEecCCCccchhhhHHHHHHhcCCCEEEECCH----hHHhhhhCCC
Q 029589 145 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK----SRLGSVNILN 190 (191)
Q Consensus 145 AkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK----~~LG~a~Gi~ 190 (191)
+.+|.|..|-++ .-+....++++++|..+.+. .++.+..|+.
T Consensus 70 ~~~v~v~~d~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~ 115 (150)
T 3fw2_A 70 IGMLGISLDVDK----QQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIY 115 (150)
T ss_dssp EEEEEEECCSCH----HHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCC
T ss_pred eEEEEEEcCCCH----HHHHHHHHHhCCCceEEEcCcccchHHHHHcCCC
Confidence 444444444333 22456667778887776663 4566666653
No 104
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=23.34 E-value=70 Score=28.47 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=29.2
Q ss_pred CcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 144 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 144 KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
.+..+++-.|++..+....+...+.+.++|+++|-+|.+|-
T Consensus 113 ~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 113 RADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp SCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTT
T ss_pred cCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCC
Confidence 35666666677666666666777777888888888887763
No 105
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=22.99 E-value=1.8e+02 Score=20.65 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCc--ceEEEecCCCccchhhhHHHHHHhcCCCEEEEC
Q 029589 134 NHVTYLIEQNKA--QLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 134 ~~Vtk~IekkKA--kLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~ 178 (191)
=.+.++|++-.. .|.|++.|-.. ..-||.+|+..|--+....
T Consensus 41 l~tkkaL~~l~~Ge~L~Vl~dd~~a---~~dI~~~~~~~G~~v~~~e 84 (98)
T 1jdq_A 41 VETKRALQNMKPGEILEVWIDYPMS---KERIPETVKKLGHEVLEIE 84 (98)
T ss_dssp HHHHHHHHTCCTTCEEEEEESSCTH---HHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEECCccH---HHHHHHHHHHCCCEEEEEE
Confidence 356667776443 37888888433 3458999999998887653
No 106
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.78 E-value=1e+02 Score=25.60 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=29.8
Q ss_pred hhHHHHHHHhc--CcceEEEecCCCccchhhhHHHHHHhcCCCEEE
Q 029589 133 LNHVTYLIEQN--KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 133 ~~~Vtk~Iekk--KAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~i 176 (191)
+..+..+|+.. +..+|++.+-.....-..-|-.+|+++|+.++.
T Consensus 109 ~~~l~~~i~~~~~~~~~v~~~~~~G~~~~l~~i~~l~~~~~~~li~ 154 (394)
T 1o69_A 109 VDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIE 154 (394)
T ss_dssp HHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhcccCCceEEEEECCCCChhhHHHHHHHHHHcCCEEEE
Confidence 45677777753 678888877433333334588999999987654
No 107
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=22.70 E-value=57 Score=23.20 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=10.7
Q ss_pred HHHHHHhcCCCEEEECCHh
Q 029589 163 LPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 163 LpaLC~k~~VPy~iV~sK~ 181 (191)
.-.+|...+++|+.+..+.
T Consensus 137 ~~~~~~~~~~~~~~~Sa~~ 155 (181)
T 2fn4_A 137 ASAFGASHHVAYFEASAKL 155 (181)
T ss_dssp HHHHHHHTTCEEEECBTTT
T ss_pred HHHHHHHcCCeEEEecCCC
Confidence 4555666666666555443
No 108
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=22.46 E-value=1.3e+02 Score=23.47 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 137 TYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 137 tk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
...+++..+..++||++.+ .++..+-+..+||++-+
T Consensus 68 ~~~l~~~g~d~iviaCnta-----~~~~~l~~~~~iPvi~i 103 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD-----PAVEKVRKLLSIPVIGA 103 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC-----TTHHHHHHHCSSCEEEH
T ss_pred HHHHHHCCCCEEEEeCCch-----HHHHHHHHhCCCCEeCc
Confidence 3445677899999999977 35788888889998764
No 109
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=22.45 E-value=1.1e+02 Score=24.98 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=31.2
Q ss_pred hhHHHHHHHhcCcceEEEe-cCCCcc-chhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 133 LNHVTYLIEQNKAQLVVIA-HDVDPI-ELVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA-~DvdP~-elv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
...+..+|+..+..+|++. +..... ++ .-|-.+|+++|+.++. +.-..+|
T Consensus 152 ~~~l~~~i~~~~~~~v~~~~~~~~~~~~l-~~i~~l~~~~~~~li~-Dea~~~g 203 (405)
T 2vi8_A 152 YDDVREKARLHRPKLIVAAAAAYPRIIDF-AKFREIADEVGAYLMV-DMAHIAG 203 (405)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCH-HHHHHHHHHHTCEEEE-ECTTTHH
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCccCCH-HHHHHHHHHcCCEEEE-Ecccccc
Confidence 4567777776456788874 332222 33 4588999999997755 4433344
No 110
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=22.45 E-value=1.1e+02 Score=24.46 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=8.4
Q ss_pred HHHHHHhcCCCEEEECC
Q 029589 163 LPALCRKMEIPYCIVKG 179 (191)
Q Consensus 163 LpaLC~k~~VPy~iV~s 179 (191)
...+++..|+|++.+..
T Consensus 131 ~~~l~~~lg~~~~~~Sa 147 (271)
T 3k53_A 131 IKKMRKELGVPVIPTNA 147 (271)
T ss_dssp HHHHHHHHSSCEEECBG
T ss_pred HHHHHHHcCCcEEEEEe
Confidence 34455555555554443
No 111
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=22.44 E-value=1.7e+02 Score=20.77 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=15.4
Q ss_pred hhhhHHHHHHhcCCCEEEECC
Q 029589 159 LVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 159 lv~~LpaLC~k~~VPy~iV~s 179 (191)
....+-..|++.||++.+|.+
T Consensus 96 ~~~~l~~~~~~~gi~v~viPG 116 (117)
T 3hh1_A 96 PGYTMASAAHAAGLPVVPVPG 116 (117)
T ss_dssp TTHHHHHHHHHTTCCEEEEC-
T ss_pred cHHHHHHHHHHCCCcEEEeCC
Confidence 344567778889999998875
No 112
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=22.43 E-value=54 Score=22.83 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=24.4
Q ss_pred CcceEEEecCCCccc---h-hhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 144 KAQLVVIAHDVDPIE---L-VVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 144 KAkLVVIA~DvdP~e---l-v~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
...+++++.=+|-.+ + ......+|+.+++||+.+..+..-|
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152 (167)
T ss_dssp CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred CCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC
Confidence 456666666555211 1 1234667777888888777665444
No 113
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=22.33 E-value=97 Score=25.79 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=29.4
Q ss_pred hhHHHHHHHhcCcceEEEecCCCcc------chhhhHHHHHHhcCCCEEEE
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPI------ELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~------elv~~LpaLC~k~~VPy~iV 177 (191)
...+..++++.+.++|+|.+=-.|. +-..-|-.+|+++|+.++.-
T Consensus 171 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D 221 (437)
T 3g0t_A 171 REKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED 221 (437)
T ss_dssp HHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE
Confidence 4556666756778888885433332 12334788999999977653
No 114
>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*
Probab=22.30 E-value=98 Score=28.63 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=37.2
Q ss_pred hHHHHHHHhcCcceEEE-ecCCCccch---hhhHHHHHHhcCCCEEEECCHhHHhhhhCC
Q 029589 134 NHVTYLIEQNKAQLVVI-AHDVDPIEL---VVWLPALCRKMEIPYCIVKGKSRLGSVNIL 189 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVI-A~DvdP~el---v~~LpaLC~k~~VPy~iV~sK~~LG~a~Gi 189 (191)
..+..+++.| +.+|-+ ..|.+..++ ..-+..+|+++++|++ |.+.-+|-..+|.
T Consensus 29 ~~ve~al~~G-v~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~li-IND~~dlA~~~gA 86 (540)
T 3nl6_A 29 GQVEAGLQNG-VTLVQIREKDADTKFFIEEALQIKELCHAHNVPLI-INDRIDVAMAIGA 86 (540)
T ss_dssp HHHHHHHHTT-CSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEE-ECSCSHHHHHTTC
T ss_pred HHHHHHHHCC-CCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEE-EeCcHHHHHHcCC
Confidence 5666677777 777777 456666544 3456788999999975 4667777766654
No 115
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=22.26 E-value=1.4e+02 Score=21.98 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=15.9
Q ss_pred hhhhHHHHHHhcCCCEEEEC
Q 029589 159 LVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 159 lv~~LpaLC~k~~VPy~iV~ 178 (191)
+...+..+|+++||+|+.+.
T Consensus 164 ~n~~~~~~a~~~~v~~iD~~ 183 (216)
T 2q0q_A 164 LARVYSALASFMKVPFFDAG 183 (216)
T ss_dssp HHHHHHHHHHHHTCCEEEGG
T ss_pred HHHHHHHHHHHcCCcEEchh
Confidence 44567889999999998764
No 116
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=22.16 E-value=57 Score=26.92 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIV 177 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV 177 (191)
++...+++..++.+|||++.+. ..++..+-+..+||++-+
T Consensus 65 ~~~~~L~~~g~d~iviaCNTas---~~~l~~lr~~~~iPvigi 104 (273)
T 2oho_A 65 ELVNFLLTQNVKMIVFACNTAT---AVAWEEVKAALDIPVLGV 104 (273)
T ss_dssp HHHHHHHTTTCSEEEECCHHHH---HHHHHHHHHHCSSCEEES
T ss_pred HHHHHHHHCCCCEEEEeCchHh---HHHHHHHHHhCCCCEEec
Confidence 4455666778999999999654 124788888899999874
No 117
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=22.14 E-value=1.7e+02 Score=22.59 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=30.1
Q ss_pred hhHHHHHHHhc--CcceEEEecCCCccc---hhhhHHHHHHhcCCCEEEECCHhH
Q 029589 133 LNHVTYLIEQN--KAQLVVIAHDVDPIE---LVVWLPALCRKMEIPYCIVKGKSR 182 (191)
Q Consensus 133 ~~~Vtk~Iekk--KAkLVVIA~DvdP~e---lv~~LpaLC~k~~VPy~iV~sK~~ 182 (191)
+..+...+.+. ++.+||++.|.-... -...+-.+.+..++|+..|.|--+
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD 82 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHD 82 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTS
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 34444555543 578999999964211 112344555667889888877654
No 118
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=22.07 E-value=45 Score=23.63 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=9.1
Q ss_pred HHHHHHhcCCCEEEECCH
Q 029589 163 LPALCRKMEIPYCIVKGK 180 (191)
Q Consensus 163 LpaLC~k~~VPy~iV~sK 180 (191)
...+|+.+++||+.+..+
T Consensus 132 ~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 132 GRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHHHHTTCEEEECBTT
T ss_pred HHHHHHHcCCcEEEecCc
Confidence 344555555555554443
No 119
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=22.07 E-value=53 Score=24.02 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=27.3
Q ss_pred CcceEEEecCCCccc----hhhhHHHHHHh----------cCCCEEEECCHhHHh
Q 029589 144 KAQLVVIAHDVDPIE----LVVWLPALCRK----------MEIPYCIVKGKSRLG 184 (191)
Q Consensus 144 KAkLVVIA~DvdP~e----lv~~LpaLC~k----------~~VPy~iV~sK~~LG 184 (191)
.+..+|+..|++..+ +..++..+.+. .++|+++|.+|.+|-
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 140 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAA 140 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTST
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCC
Confidence 577788888877543 22344444433 289999999988764
No 120
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=22.00 E-value=51 Score=23.54 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=8.4
Q ss_pred hcCCCEEEECCHhHH
Q 029589 169 KMEIPYCIVKGKSRL 183 (191)
Q Consensus 169 k~~VPy~iV~sK~~L 183 (191)
..++|+++|.+|.+|
T Consensus 105 ~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 105 AANVPIIVAINKMDK 119 (178)
T ss_dssp GGSCCEEEEEETTTS
T ss_pred hCCCCEEEEEECccC
Confidence 345666666665554
No 121
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.82 E-value=1.6e+02 Score=22.76 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=21.2
Q ss_pred HHHHHhcCcceEEEecCCCcc-chhhhHHHHHHhcCCCEEEECCH
Q 029589 137 TYLIEQNKAQLVVIAHDVDPI-ELVVWLPALCRKMEIPYCIVKGK 180 (191)
Q Consensus 137 tk~IekkKAkLVVIA~DvdP~-elv~~LpaLC~k~~VPy~iV~sK 180 (191)
..++.++--.++++..|.+.. .... +-..+.+.|||++.+.+.
T Consensus 65 ~~l~~~~vdgiIi~~~~~~~~~~~~~-~~~~~~~~~iPvV~~~~~ 108 (298)
T 3tb6_A 65 ENLLSQHIDGLIVEPTKSALQTPNIG-YYLNLEKNGIPFAMINAS 108 (298)
T ss_dssp HHHHHTCCSEEEECCSSTTSCCTTHH-HHHHHHHTTCCEEEESSC
T ss_pred HHHHHCCCCEEEEecccccccCCcHH-HHHHHHhcCCCEEEEecC
Confidence 334444444455444443211 1112 234456678888887653
No 122
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=21.80 E-value=1.3e+02 Score=23.54 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=32.2
Q ss_pred HHHHHHHhcCc-ceEEEecCCCccchhhhHHHHHHhcCCC--EEEECC-HhHHhhhhCC
Q 029589 135 HVTYLIEQNKA-QLVVIAHDVDPIELVVWLPALCRKMEIP--YCIVKG-KSRLGSVNIL 189 (191)
Q Consensus 135 ~Vtk~IekkKA-kLVVIA~DvdP~elv~~LpaLC~k~~VP--y~iV~s-K~~LG~a~Gi 189 (191)
.....++..-+ .++.|+.| +|. -..++|++++++ |-++.+ ..+++++.|+
T Consensus 73 ~~~~ef~~~g~d~VigIS~D-~~~----~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv 126 (176)
T 4f82_A 73 EHAEQLRAAGIDEIWCVSVN-DAF----VMGAWGRDLHTAGKVRMMADGSAAFTHALGL 126 (176)
T ss_dssp HHHHHHHHTTCCEEEEEESS-CHH----HHHHHHHHTTCTTTSEEEECTTCHHHHHHTC
T ss_pred HHHHHHHhCCCCEEEEEeCC-CHH----HHHHHHHHhCCCCCceEEEcCchHHHHHhCC
Confidence 33344455556 78888887 332 256789998888 665544 4567777775
No 123
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=21.75 E-value=46 Score=27.16 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=29.4
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEE
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~i 176 (191)
+....+++..+..+|||++.++. .++..+-+..+||++-
T Consensus 53 ~~~~~L~~~g~d~iviaCNTa~~---~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 53 EALDFFKPHEIELLIVACNTASA---LALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHHGGGCCSCEEECCHHHHH---HTHHHHHHHCSSCEEC
T ss_pred HHHHHHHHCCCCEEEEeCchhhH---HHHHHHHHhCCCCEEe
Confidence 34445666789999999997651 1578888889999886
No 124
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=21.72 E-value=89 Score=24.11 Aligned_cols=43 Identities=7% Similarity=0.163 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCcceEEEecCC-CccchhhhHHHHHHhcCCCEEEECCHh
Q 029589 134 NHVTYLIEQNKAQLVVIAHDV-DPIELVVWLPALCRKMEIPYCIVKGKS 181 (191)
Q Consensus 134 ~~Vtk~IekkKAkLVVIA~Dv-dP~elv~~LpaLC~k~~VPy~iV~sK~ 181 (191)
..+...++..++.+||++.|. +| +. +..| .+.++|+..|.|--
T Consensus 42 ~~~l~~~~~~~~D~ii~~GDl~~~-~~---~~~l-~~l~~~~~~V~GNh 85 (190)
T 1s3l_A 42 RKAIEIFNDENVETVIHCGDFVSL-FV---IKEF-ENLNANIIATYGNN 85 (190)
T ss_dssp HHHHHHHHHSCCSEEEECSCCCST-HH---HHHG-GGCSSEEEEECCTT
T ss_pred HHHHHHHhhcCCCEEEECCCCCCH-HH---HHHH-HhcCCCEEEEeCCC
Confidence 344455556778899999995 44 32 2222 34467888887654
No 125
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=21.62 E-value=43 Score=24.65 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=7.6
Q ss_pred cCCCEEEECCHhHH
Q 029589 170 MEIPYCIVKGKSRL 183 (191)
Q Consensus 170 ~~VPy~iV~sK~~L 183 (191)
.++|+++|.+|.+|
T Consensus 125 ~~~piilv~nK~Dl 138 (190)
T 2h57_A 125 RRIPILFFANKMDL 138 (190)
T ss_dssp SCCCEEEEEECTTS
T ss_pred CCCeEEEEEeCcCc
Confidence 35555555555554
No 126
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=21.58 E-value=59 Score=24.22 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=24.9
Q ss_pred cceEEEecCCCcc--chhhhHHHHHHh-----cCCCEEEECCHhHH
Q 029589 145 AQLVVIAHDVDPI--ELVVWLPALCRK-----MEIPYCIVKGKSRL 183 (191)
Q Consensus 145 AkLVVIA~DvdP~--elv~~LpaLC~k-----~~VPy~iV~sK~~L 183 (191)
+..+|+..|++.. +....+..+..+ .++|+++|.+|.+|
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl 141 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG 141 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence 6667777777663 222333333333 38999999999885
No 127
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.32 E-value=1.7e+02 Score=23.43 Aligned_cols=41 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred hHHHHHHHhcCc--ceEEEecCCCccchhhhHHHHHHhcCCCEEEEC
Q 029589 134 NHVTYLIEQNKA--QLVVIAHDVDPIELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 134 ~~Vtk~IekkKA--kLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~ 178 (191)
..+..++.++.. .+|.+-.|-+. ...-..|+++|||+..+.
T Consensus 16 ~~~l~~l~~~~~~~~i~~Vvs~~~~----~~~~~~A~~~gIp~~~~~ 58 (216)
T 2ywr_A 16 QAIIDAIESGKVNASIELVISDNPK----AYAIERCKKHNVECKVIQ 58 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEESCTT----CHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHhCCCCCeEEEEEeCCCC----hHHHHHHHHcCCCEEEeC
Confidence 345566666543 55544444322 124678999999998754
No 128
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=21.19 E-value=44 Score=23.68 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=8.1
Q ss_pred cCCCEEEECCHhHH
Q 029589 170 MEIPYCIVKGKSRL 183 (191)
Q Consensus 170 ~~VPy~iV~sK~~L 183 (191)
.++|+++|.+|.+|
T Consensus 107 ~~~piilv~nK~Dl 120 (171)
T 1upt_A 107 RKAILVVFANKQDM 120 (171)
T ss_dssp TTCEEEEEEECTTS
T ss_pred CCCEEEEEEECCCC
Confidence 45666666665554
No 129
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=21.12 E-value=1.1e+02 Score=25.11 Aligned_cols=46 Identities=7% Similarity=0.304 Sum_probs=29.8
Q ss_pred hhHHHHHHHhcCcceEEEecCCCcc------chhhhHHHHHHhcCCCEEEEC
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPI------ELVVWLPALCRKMEIPYCIVK 178 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~------elv~~LpaLC~k~~VPy~iV~ 178 (191)
...+..+++..+.++|+|.+=-.|. +-..-|-.+|+++|+.++.-.
T Consensus 151 ~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De 202 (390)
T 1d2f_A 151 MGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDE 202 (390)
T ss_dssp HHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEc
Confidence 4566777765577888875422231 223457889999999876533
No 130
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=21.09 E-value=1.6e+02 Score=18.33 Aligned_cols=45 Identities=7% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECCH
Q 029589 135 HVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 180 (191)
Q Consensus 135 ~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~sK 180 (191)
.+...++...+.+..+-.|-++ +....+-......+||.+++.+.
T Consensus 16 ~~~~~l~~~~i~~~~~~i~~~~-~~~~~~~~~~~~~~vP~l~~~g~ 60 (82)
T 1fov_A 16 RAKALLSSKGVSFQELPIDGNA-AKREEMIKRSGRTTVPQIFIDAQ 60 (82)
T ss_dssp HHHHHHHHHTCCCEEEECTTCS-HHHHHHHHHHSSCCSCEEEETTE
T ss_pred HHHHHHHHCCCCcEEEECCCCH-HHHHHHHHHhCCCCcCEEEECCE
Confidence 4445566555666666555444 33233444555678999988774
No 131
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=21.08 E-value=1.5e+02 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=33.2
Q ss_pred hhHHHHHHHhcCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s 179 (191)
.+.+..++.++.+.-||.....+...+..++-.+|..++||.+....
T Consensus 52 ~~~~C~~l~~~~V~aiIgg~~s~~~a~a~~v~~i~~~~~iP~IS~~a 98 (364)
T 3qel_B 52 ITRICDLMSDRKIQGVVFADDTDQEAIAQILDFISAQTLTPILGIHG 98 (364)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSCCTHHHHHHHHHHHHHTCCEEEEEG
T ss_pred HHHHHHHHHhCCeEEEEecCCCCchHHHHHHHHHHhccCCCEEEeec
Confidence 56677777777776666666655434445578899999999987654
No 132
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=20.94 E-value=1.1e+02 Score=25.09 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=29.7
Q ss_pred hhHHHHHHHhcCcceEEEecCCCc----cchhhhHHHHHHhcCCCEEE
Q 029589 133 LNHVTYLIEQNKAQLVVIAHDVDP----IELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 133 ~~~Vtk~IekkKAkLVVIA~DvdP----~elv~~LpaLC~k~~VPy~i 176 (191)
...+..+|+..+..+|++.+=-.| ..+ .-|-.+|+++|+.++.
T Consensus 125 ~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l-~~i~~l~~~~~~~li~ 171 (416)
T 3isl_A 125 PEDIIREIKKVKPKIVAMVHGETSTGRIHPL-KAIGEACRTEDALFIV 171 (416)
T ss_dssp HHHHHHHHHHHCCSEEEEESEETTTTEECCC-HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHhhCCCcEEEEEccCCCCceecCH-HHHHHHHHHcCCEEEE
Confidence 567788887667788888763111 123 3478999999997754
No 133
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=20.82 E-value=49 Score=23.86 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=25.0
Q ss_pred CcceEEEecCCCcc--c--hhhhHHHHHHhcCCCEEEECCHhHHh
Q 029589 144 KAQLVVIAHDVDPI--E--LVVWLPALCRKMEIPYCIVKGKSRLG 184 (191)
Q Consensus 144 KAkLVVIA~DvdP~--e--lv~~LpaLC~k~~VPy~iV~sK~~LG 184 (191)
...+++++.=+|-. . ....+..+|+.+++||+.+..+..-|
T Consensus 111 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 111 QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155 (181)
T ss_dssp -CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 45566776655521 1 12346678888888888777766544
No 134
>2i0x_A Hypothetical protein PF1117; PSI, STRU genomics, southeast collaboratory for structural genomics, structure initiative, secsg; 2.70A {Pyrococcus furiosus} SCOP: d.58.58.1
Probab=20.51 E-value=51 Score=23.05 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=22.0
Q ss_pred eEEEecCCCccchhhhHHHHHHhcCCCE
Q 029589 147 LVVIAHDVDPIELVVWLPALCRKMEIPY 174 (191)
Q Consensus 147 LVVIA~DvdP~elv~~LpaLC~k~~VPy 174 (191)
+|+|+-|++. .....+-.+|+++|..+
T Consensus 2 ~vlv~YDI~~-kR~~kv~k~l~~yg~rv 28 (85)
T 2i0x_A 2 YIVVVYDVGV-ERVNKVKKFLRMHLNWV 28 (85)
T ss_dssp EEEEEEECCS-SSHHHHHHHHTTTSEEE
T ss_pred EEEEEeeCCh-HHHHHHHHHHHHhCccc
Confidence 5899999988 55566899999998764
No 135
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=20.46 E-value=1.3e+02 Score=23.83 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=29.9
Q ss_pred hhHHHHHHHhc------CcceEEEecCCCcc------chhhhHHHHHHhcCCCEEE
Q 029589 133 LNHVTYLIEQN------KAQLVVIAHDVDPI------ELVVWLPALCRKMEIPYCI 176 (191)
Q Consensus 133 ~~~Vtk~Iekk------KAkLVVIA~DvdP~------elv~~LpaLC~k~~VPy~i 176 (191)
+..+..+++.. +..+|++.+- .|. +-..-|-++|+++|+.++.
T Consensus 128 ~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~ 182 (359)
T 1svv_A 128 VADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFL 182 (359)
T ss_dssp HHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEE
Confidence 56777888776 4788888753 331 2244588999999997654
No 136
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=20.08 E-value=90 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=27.4
Q ss_pred cCcceEEEecCCCccchhhhHHHHHHhcCCCEEEECC
Q 029589 143 NKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG 179 (191)
Q Consensus 143 kKAkLVVIA~DvdP~elv~~LpaLC~k~~VPy~iV~s 179 (191)
....+||.|.|- .+....|-..|++++||++...+
T Consensus 124 ~~~dvVv~~~d~--~~~r~~ln~~~~~~~ip~i~~~~ 158 (346)
T 1y8q_A 124 TQFDAVCLTCCS--RDVIVKVDQICHKNSIKFFTGDV 158 (346)
T ss_dssp TTCSEEEEESCC--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCEEEEcCCC--HHHHHHHHHHHHHcCCCEEEEee
Confidence 357899888763 35556799999999999998654
Done!