Query 029590
Match_columns 191
No_of_seqs 164 out of 1114
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 15:21:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029590.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029590hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 3.5E-29 7.6E-34 211.5 11.7 147 11-191 3-149 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 2E-22 4.4E-27 145.4 6.8 86 16-104 2-87 (87)
3 KOG1623 Multitransmembrane pro 99.6 1.5E-15 3.3E-20 128.7 4.6 93 10-105 121-213 (243)
4 COG4095 Uncharacterized conser 99.2 3.9E-11 8.4E-16 86.7 6.1 83 12-100 3-85 (89)
5 PF04193 PQ-loop: PQ loop repe 98.1 1.1E-05 2.3E-10 54.1 5.8 56 15-75 3-58 (61)
6 TIGR00951 2A43 Lysosomal Cysti 96.7 0.01 2.2E-07 49.9 8.3 50 14-66 4-53 (220)
7 smart00679 CTNS Repeated motif 94.2 0.052 1.1E-06 31.4 2.6 26 31-56 2-27 (32)
8 TIGR00951 2A43 Lysosomal Cysti 90.8 0.55 1.2E-05 39.5 5.4 78 16-95 138-215 (220)
9 PF03650 MPC: Uncharacterised 90.0 0.086 1.9E-06 40.5 -0.2 63 42-105 39-101 (119)
10 KOG1589 Uncharacterized conser 88.2 0.13 2.9E-06 38.9 -0.2 58 42-100 43-100 (118)
11 KOG3211 Predicted endoplasmic 75.9 3.6 7.7E-05 34.8 3.6 71 29-101 154-224 (230)
12 KOG2913 Predicted membrane pro 75.9 6.7 0.00015 34.0 5.5 55 17-73 9-63 (260)
13 PHA02246 hypothetical protein 73.8 23 0.00051 28.7 7.6 62 24-87 116-177 (192)
14 KOG3211 Predicted endoplasmic 65.6 15 0.00033 31.1 5.1 52 13-67 30-81 (230)
15 PF13998 MgrB: MgrB protein 56.0 3.6 7.9E-05 23.9 -0.1 13 120-132 17-29 (29)
16 PF05602 CLPTM1: Cleft lip and 54.2 35 0.00075 31.4 6.0 71 20-93 305-376 (438)
17 KOG2913 Predicted membrane pro 52.7 15 0.00033 31.8 3.2 45 20-67 169-213 (260)
18 PRK10299 PhoPQ regulatory prot 46.9 11 0.00025 24.2 1.1 30 90-132 18-47 (47)
19 PF07578 LAB_N: Lipid A Biosyn 39.0 46 0.001 23.3 3.3 52 33-88 14-65 (72)
20 PF10688 Imp-YgjV: Bacterial i 35.6 12 0.00026 29.9 -0.1 35 54-91 118-152 (163)
21 COG5130 YIP3 Prenylated rab ac 29.0 40 0.00087 26.9 1.9 23 167-189 116-138 (169)
22 KOG3339 Predicted glycosyltran 25.0 46 0.001 27.9 1.6 58 36-97 97-154 (211)
23 PF01102 Glycophorin_A: Glycop 21.3 1.5E+02 0.0032 22.8 3.7 22 11-32 65-86 (122)
24 PF11177 DUF2964: Protein of u 20.1 3E+02 0.0064 18.8 4.8 24 163-186 32-55 (62)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.96 E-value=3.5e-29 Score=211.48 Aligned_cols=147 Identities=43% Similarity=0.725 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHH
Q 029590 11 TVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQL 90 (191)
Q Consensus 11 ~~~~~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~ 90 (191)
+....++|..|+++++++|++|+|+++||+|+||+|++|..||+++++||.+|+.|| .+++||..++.+|++|+++++
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999 566646889999999999999
Q ss_pred HHhhhheeeccccccccccccccchhhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccCcceeeeeh
Q 029590 91 VYIILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPLCSRQVRMLGLLLAVIGIFSIIVAVSLQIVNPFSRQMFV 170 (191)
Q Consensus 91 ~yl~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (191)
+|+..|+.|+++|+... ......++. +..+++++....++++.+.+.+
T Consensus 81 ~Yi~~f~~ya~~k~~~~------------------------------~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l 128 (243)
T KOG1623|consen 81 VYISIFLYYAPKKKTVK------------------------------IVLALVLGV--IGLIILLTLLLFHDPERRVSVL 128 (243)
T ss_pred HHHHHHheecCchheeE------------------------------eeehHHHHH--HHHHHHHHHHhcCCcceeeeee
Confidence 99999999999888531 011111111 1222334556778899999999
Q ss_pred hhHHHHHHHHHhhhchhhhhC
Q 029590 171 GLLSCAALISMFASPLFIIVR 191 (191)
Q Consensus 171 G~~~~~~~i~my~sPL~~~~~ 191 (191)
|.+|++++++||||||+.||+
T Consensus 129 G~vc~~~nI~~~~sPL~~m~~ 149 (243)
T KOG1623|consen 129 GIVCAVFNISMFAAPLSVIRK 149 (243)
T ss_pred ehhhhhhhHHhhhccHHhhhh
Confidence 999999999999999999974
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.87 E-value=2e-22 Score=145.43 Aligned_cols=86 Identities=27% Similarity=0.626 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhh
Q 029590 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (191)
Q Consensus 16 vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v 95 (191)
++|.+|++.++++++||+++++|++|+||+|++|+.|+++.++||.+|+.|| ++.+| ++++.+|++|.+++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999 78875 68999999999999999999
Q ss_pred heeeccccc
Q 029590 96 FITYTEKDK 104 (191)
Q Consensus 96 ~~~y~~~~~ 104 (191)
|++|+++||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 3
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.57 E-value=1.5e-15 Score=128.70 Aligned_cols=93 Identities=23% Similarity=0.429 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhH
Q 029590 10 LTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQ 89 (191)
Q Consensus 10 ~~~~~~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~ 89 (191)
++...+.+|.+|.+++++||.||+..+++++|+||+|.+|+....+.++++..|+.|| ++.+| +++..+|+.|.+++
T Consensus 121 ~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE~mPf~Ls~a~fl~a~~W~lYG--lli~D-~~IaipN~iG~~l~ 197 (243)
T KOG1623|consen 121 PERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVEYMPFPLSFALFLVAVQWLLYG--LLIKD-FFIAIPNVLGFLLG 197 (243)
T ss_pred cceeeeeeehhhhhhhHHhhhccHHhhhhheecCceeeechHHHHHHHHHHHHHHHHH--HHhcC-eEEEcccHHHHHHH
Confidence 3344678999999999999999999999999999999999999999999999999999 67764 77999999999999
Q ss_pred HHHhhhheeecccccc
Q 029590 90 LVYIILFITYTEKDKK 105 (191)
Q Consensus 90 ~~yl~v~~~y~~~~~~ 105 (191)
+.|+.+|++|++++.+
T Consensus 198 ~~QL~Ly~~y~~~~~~ 213 (243)
T KOG1623|consen 198 LIQLILYFKYPKTTEK 213 (243)
T ss_pred HHHHHHhhhcCCCccc
Confidence 9999999999877744
No 4
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.9e-11 Score=86.73 Aligned_cols=83 Identities=19% Similarity=0.373 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHH
Q 029590 12 VLKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 91 (191)
Q Consensus 12 ~~~~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~ 91 (191)
...+++|..|+..+...| +||..+++|+||++++|+..+......+.+|+.|| ++.+| .|+...|.++..++..
T Consensus 3 ~~~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHH
Confidence 345778888888887666 99999999999999999999999999999999999 88974 8999999999999998
Q ss_pred Hhhhheeec
Q 029590 92 YIILFITYT 100 (191)
Q Consensus 92 yl~v~~~y~ 100 (191)
-+.....|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 777766654
No 5
>PF04193 PQ-loop: PQ loop repeat
Probab=98.08 E-value=1.1e-05 Score=54.07 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCc
Q 029590 15 DAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADN 75 (191)
Q Consensus 15 ~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~ 75 (191)
+++|.++. ++...+.+||+++.+|+||++++|...+.....+..+|+.|. ++.+++
T Consensus 3 ~~~g~i~~---~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~~ 58 (61)
T PF04193_consen 3 NILGIISI---VLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNYP 58 (61)
T ss_pred HHHHHHHH---HHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcCC
Confidence 34555554 455567799999999999999999999999999999999999 676654
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.67 E-value=0.01 Score=49.93 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHH
Q 029590 14 KDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWY 66 (191)
Q Consensus 14 ~~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~Y 66 (191)
..++|....+... .+-+||+.+.+|+||++++|+..+..-......|..|
T Consensus 4 S~~lG~~~~~~~~---~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 4 SQILGWGYVAAWS---ISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHHHHHHH---HHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 3456665555555 5669999999999999999999999999999999999
No 7
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=94.22 E-value=0.052 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHhcccCcccchhHHHH
Q 029590 31 SPVPTFRRIIRNHSTEEFSGLPYVYA 56 (191)
Q Consensus 31 SPlp~~~~I~k~kst~~~s~~p~v~~ 56 (191)
+-+|++.+++|+||++++|+..+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~ 27 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLW 27 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHH
Confidence 56899999999999999987666543
No 8
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=90.78 E-value=0.55 Score=39.48 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhh
Q 029590 16 AVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIIL 95 (191)
Q Consensus 16 vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v 95 (191)
.+..+..+--.....+-+||++.-.|+|||++.|......-+..+..=..-. +..++|...+....++..++.+...=
T Consensus 138 ~l~~l~~iki~is~ikyiPQi~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts--~~~~gd~~~l~~~~~s~~~n~i~~~Q 215 (220)
T TIGR00951 138 FVTMLSYIKVAVTLVKYFPQAATNYHNKSTGQLSIITVFLDFTGLLQRIFQS--VNETGDPLKAGLFVVSSLFNGLFAAQ 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344467799999999999999999998887777755444445 33445666666667777777776653
No 9
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=89.95 E-value=0.086 Score=40.51 Aligned_cols=63 Identities=25% Similarity=0.270 Sum_probs=53.2
Q ss_pred hcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhhheeecccccc
Q 029590 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTEKDKK 105 (191)
Q Consensus 42 ~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v~~~y~~~~~~ 105 (191)
+|..|.+|..+..+..+.+.+|..|++ .+...++.++.+|.+-...+.+++.=++.|...+++
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~~ 101 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQKK 101 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 588999999999999999999999996 555556789999999999999999977777654443
No 10
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.21 E-value=0.13 Score=38.87 Aligned_cols=58 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred hcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhhheeec
Q 029590 42 NHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYT 100 (191)
Q Consensus 42 ~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v~~~y~ 100 (191)
.|..|.+|.....+.....+.|..|++ +++..++.++.+|.+=...+.+++.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999996 5665568899999999999999998777774
No 11
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=75.91 E-value=3.6 Score=34.77 Aligned_cols=71 Identities=17% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhhheeecc
Q 029590 29 FVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFITYTE 101 (191)
Q Consensus 29 flSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v~~~y~~ 101 (191)
-.|=++|+.+-.|+|++|..|.......+..|..=..|. +..++|+.+...-....+++..-..-..+|.+
T Consensus 154 v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s 224 (230)
T KOG3211|consen 154 VVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWS 224 (230)
T ss_pred hHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHh
Confidence 367789999999999999999999999999999999999 67777786776666666666555544444443
No 12
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=75.86 E-value=6.7 Score=33.98 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccC
Q 029590 17 VGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSA 73 (191)
Q Consensus 17 vg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~ 73 (191)
-..+|++.+++--.+-+||+.+..|+||.+++|+.+.+.-.+....=+.|- .+.+
T Consensus 9 s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~ 63 (260)
T KOG2913|consen 9 STILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQP 63 (260)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhcc
Confidence 344455555555566699999999999999999999888777777777777 4443
No 13
>PHA02246 hypothetical protein
Probab=73.76 E-value=23 Score=28.72 Aligned_cols=62 Identities=6% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhh
Q 029590 24 FAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAA 87 (191)
Q Consensus 24 ~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~ 87 (191)
.++-..++.+||+.+-+|+|++|+.|...++.....-.+ +...+ .+++-...++.+-.....
T Consensus 116 at~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~-L~~~m-~Lthv~~hIiiTEf~N~i 177 (192)
T PHA02246 116 ATITIILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLAS-LIVSM-VLTHTYVHIIATEFVNFV 177 (192)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHH-HHHHH-hhhCCcceeeHHHHHHHH
Confidence 334445667999999999999999998887764433222 23332 345433445554444443
No 14
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=65.61 E-value=15 Score=31.08 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHh
Q 029590 13 LKDAVGIAGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (191)
Q Consensus 13 ~~~vvg~la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YG 67 (191)
..+.+|......++... +||+.+|+.+||++++|..-+..-++.-..-+.|.
T Consensus 30 lsklLg~~~va~sl~vK---lPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~ 81 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVK---LPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS 81 (230)
T ss_pred HHhhhhHHHHHHHHHhh---hhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh
Confidence 45556666666666555 99999999999999999998888888888888888
No 15
>PF13998 MgrB: MgrB protein
Probab=55.98 E-value=3.6 Score=23.86 Aligned_cols=13 Identities=46% Similarity=0.902 Sum_probs=11.4
Q ss_pred ccccccccccccc
Q 029590 120 GSAICSVNQFFPL 132 (191)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (191)
.+-+|++++++||
T Consensus 17 ~~GiC~it~~iP~ 29 (29)
T PF13998_consen 17 FSGICSITRFIPW 29 (29)
T ss_pred eeeeeEEeeecCC
Confidence 4789999999997
No 16
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=54.21 E-value=35 Score=31.45 Aligned_cols=71 Identities=13% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCC-ceEEEeeehhhhhhHHHHh
Q 029590 20 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSAD-NILVTTVNSIGAAFQLVYI 93 (191)
Q Consensus 20 la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d-~~~Ii~~N~~G~~l~~~yl 93 (191)
++.+-++.=|++-=.++.-++++||.+++|.-..+.-+++.+.=+.|= +.+| .+.|.+++++|+++++.=+
T Consensus 305 vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~WKv 376 (438)
T PF05602_consen 305 VSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEAWKV 376 (438)
T ss_pred HHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhheee
Confidence 344446667778788999999999999999888887777777777776 4433 5779999999999887533
No 17
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=52.66 E-value=15 Score=31.78 Aligned_cols=45 Identities=24% Similarity=0.208 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHccHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHh
Q 029590 20 AGNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (191)
Q Consensus 20 la~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YG 67 (191)
+|.+.+++-..+.+||+..-+|+|+++++++..|. +++..=..|+
T Consensus 169 lG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~---~~~~~n~~y~ 213 (260)
T KOG2913|consen 169 LGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFA---FNSLGNTTYI 213 (260)
T ss_pred HHHHHHHHHcccccchhhhhhccCccchhHHHHHH---HHHccccccc
Confidence 44455677778999999999999999999875554 4445556677
No 18
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=46.90 E-value=11 Score=24.19 Aligned_cols=30 Identities=30% Similarity=0.646 Sum_probs=23.5
Q ss_pred HHHhhhheeeccccccccccccccchhhccccccccccccccc
Q 029590 90 LVYIILFITYTEKDKKVSYPFSHMHLVYCSGSAICSVNQFFPL 132 (191)
Q Consensus 90 ~~yl~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (191)
..|+...=.++++..++ .+.+|+++.+.||
T Consensus 18 ~lyl~ald~~CDQg~~F-------------~~GIC~it~~iPw 47 (47)
T PRK10299 18 LLWAQVFNMMCDQDVQF-------------FSGICAINKFIPW 47 (47)
T ss_pred HHHHHHHHHHhcCCccc-------------eeeeeeeeeecCC
Confidence 35677777788877665 4789999999997
No 19
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=38.99 E-value=46 Score=23.34 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhh
Q 029590 33 VPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAF 88 (191)
Q Consensus 33 lp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l 88 (191)
+-|-..-.|+|.+ .+|..--...++.+.+=+.|| +..+| +..+...+.|.+.
T Consensus 14 ~~QW~~SEk~k~s-v~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~i 65 (72)
T PF07578_consen 14 IVQWIYSEKAKKS-VVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLFI 65 (72)
T ss_pred HHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChHH
Confidence 4455555555552 346666678889999999999 77775 5344444555443
No 20
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=35.64 E-value=12 Score=29.94 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHH
Q 029590 54 VYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLV 91 (191)
Q Consensus 54 v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~ 91 (191)
...++++.+|+.|+ ++.++ ++....|..-...+.+
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~ 152 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLI 152 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHH
Confidence 45789999999999 78875 6566666665555544
No 21
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=28.99 E-value=40 Score=26.95 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=20.5
Q ss_pred eeehhhHHHHHHHHHhhhchhhh
Q 029590 167 QMFVGLLSCAALISMFASPLFII 189 (191)
Q Consensus 167 ~~~~G~~~~~~~i~my~sPL~~~ 189 (191)
+-..|++|+.+-+.+++||..++
T Consensus 116 ~ly~glvcvlip~gffaspI~tl 138 (169)
T COG5130 116 VLYAGLVCVLIPFGFFASPIVTL 138 (169)
T ss_pred hhhhhHHHHHHHHHHHHhHHHHH
Confidence 55789999999999999999875
No 22
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=25.03 E-value=46 Score=27.86 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=43.5
Q ss_pred HHHHHHhcccCcccchhHHHHHHHHHHHHHHhcccccCCceEEEeeehhhhhhHHHHhhhhe
Q 029590 36 FRRIIRNHSTEEFSGLPYVYALLNCLITMWYGTPLVSADNILVTTVNSIGAAFQLVYIILFI 97 (191)
Q Consensus 36 ~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N~~G~~l~~~yl~v~~ 97 (191)
..++-|.|++++ |.+..+.+.+++++|..+= +.++..-++..|++|...-+.+....+
T Consensus 97 ~~~ipRsReVgQ-S~ltSv~Tti~all~s~~l---v~RirPdlil~NGPGTCv~i~~~a~l~ 154 (211)
T KOG3339|consen 97 NYEIPRSREVGQ-SWLTSVFTTIWALLQSFVL---VWRIRPDLILCNGPGTCVPICLSAYLM 154 (211)
T ss_pred heecchhhhhhh-hhhhhHHHHHHHHHHHheE---EEecCCCEEEECCCCcEeHHHHHHHHH
Confidence 345788888887 8888899999999988865 333344599999999887666655444
No 23
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.33 E-value=1.5e+02 Score=22.81 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcc
Q 029590 11 TVLKDAVGIAGNIFAFGLFVSP 32 (191)
Q Consensus 11 ~~~~~vvg~la~v~si~mflSP 32 (191)
+-..-++|++|.++.++++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHH
Confidence 3456678888888877766443
No 24
>PF11177 DUF2964: Protein of unknown function (DUF2964); InterPro: IPR021347 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.07 E-value=3e+02 Score=18.76 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=18.5
Q ss_pred cceeeeehhhHHHHHHHHHhhhch
Q 029590 163 PFSRQMFVGLLSCAALISMFASPL 186 (191)
Q Consensus 163 ~~~~~~~~G~~~~~~~i~my~sPL 186 (191)
.+++....|.++.+..+.-|..=|
T Consensus 32 D~~~~~~yg~~al~~Gv~~fV~~L 55 (62)
T PF11177_consen 32 DEERVFRYGVIALVVGVAGFVVML 55 (62)
T ss_pred cccchhHHHHHHHHHHHHHHHHhC
Confidence 446777889999998888887644
Done!