Query 029590
Match_columns 191
No_of_seqs 164 out of 1114
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dad_A FH1/FH2 domain-containi 5.4 3.5E+02 0.012 23.1 2.6 31 32-62 255-285 (339)
2 2vxz_A Pyrsv_GP04; viral prote 5.2 4.7E+02 0.016 20.1 2.9 31 52-82 125-155 (165)
3 3qrx_B Melittin; calcium-bindi 4.7 4.3E+02 0.015 13.9 1.7 15 30-44 10-24 (26)
4 2b2h_A AMT-1, ammonium transpo 4.0 2.4E+02 0.0082 24.6 0.5 29 39-67 30-58 (399)
5 1u7g_A Probable ammonium trans 3.4 2.3E+02 0.008 24.6 -0.1 29 39-67 35-63 (385)
6 3j1z_P YIIP, cation efflux fam 3.3 1.7E+03 0.057 17.7 5.4 32 82-113 47-78 (306)
7 2nr1_A NR1 M2, M2; receptor, s 3.3 5E+02 0.017 14.0 1.2 10 58-67 9-18 (27)
8 3l1l_A Arginine/agmatine antip 2.9 1.9E+03 0.066 17.6 6.1 47 21-67 357-404 (445)
9 3h90_A Ferrous-iron efflux pum 2.4 2.1E+03 0.07 16.7 6.0 32 82-113 38-69 (283)
10 2l2t_A Receptor tyrosine-prote 2.3 1.2E+03 0.04 13.7 2.5 21 8-28 5-25 (44)
No 1
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=5.41 E-value=3.5e+02 Score=23.13 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.4
Q ss_pred cHHHHHHHHHhcccCcccchhHHHHHHHHHH
Q 029590 32 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLI 62 (191)
Q Consensus 32 Plp~~~~I~k~kst~~~s~~p~v~~~~n~~l 62 (191)
|+..+.++.++|+.++.....+.++++|+++
T Consensus 255 p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 255 PWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp TTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 4677777888888888888888888888764
No 2
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=5.18 E-value=4.7e+02 Score=20.08 Aligned_cols=31 Identities=35% Similarity=0.629 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHhcccccCCceEEEeee
Q 029590 52 PYVYALLNCLITMWYGTPLVSADNILVTTVN 82 (191)
Q Consensus 52 p~v~~~~n~~lWl~YGl~~l~~d~~~Ii~~N 82 (191)
--...|+|+.+=..||-|+-.+|....+.+|
T Consensus 125 ~~~l~fl~~~l~~l~g~p~~k~~~~~~~~~~ 155 (165)
T 2vxz_A 125 AIILSFLNHLLKMIYGEPYVKTDETVYLTAN 155 (165)
T ss_dssp HHHHHHHHHHHHHHHCSCSBCSSSCBEEGGG
T ss_pred hHHHHHHHHHHHHHhCCCccccccEEEEEec
Confidence 3467899999999999999888765444444
No 3
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=4.72 E-value=4.3e+02 Score=13.90 Aligned_cols=15 Identities=13% Similarity=0.332 Sum_probs=11.4
Q ss_pred HccHHHHHHHHHhcc
Q 029590 30 VSPVPTFRRIIRNHS 44 (191)
Q Consensus 30 lSPlp~~~~I~k~ks 44 (191)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 456788888888875
No 4
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=3.98 E-value=2.4e+02 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.591 Sum_probs=23.8
Q ss_pred HHHhcccCcccchhHHHHHHHHHHHHHHh
Q 029590 39 IIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (191)
Q Consensus 39 I~k~kst~~~s~~p~v~~~~n~~lWl~YG 67 (191)
..|+|++-+.=...+....+.+..|..+|
T Consensus 30 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~G 58 (399)
T 2b2h_A 30 MVRRKNAVNMIALSFISLIITVLLWIFYG 58 (399)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788887777777888889999999987
No 5
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=3.39 E-value=2.3e+02 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=23.9
Q ss_pred HHHhcccCcccchhHHHHHHHHHHHHHHh
Q 029590 39 IIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (191)
Q Consensus 39 I~k~kst~~~s~~p~v~~~~n~~lWl~YG 67 (191)
..|+|++-+.=...+....+.+..|..+|
T Consensus 35 ~vR~KN~~n~l~k~~~~~~i~~i~w~~~G 63 (385)
T 1u7g_A 35 LIRGKNVLSMLTQVTVTFALVCILWVVYG 63 (385)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788887777777888889999999987
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=3.34 E-value=1.7e+03 Score=17.72 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=17.4
Q ss_pred ehhhhhhHHHHhhhheeecccccccccccccc
Q 029590 82 NSIGAAFQLVYIILFITYTEKDKKVSYPFSHM 113 (191)
Q Consensus 82 N~~G~~l~~~yl~v~~~y~~~~~~~~~~~~~~ 113 (191)
+.+..+++..-..+-.++..++...++|+||-
T Consensus 47 hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~ 78 (306)
T 3j1z_P 47 DSFADTLASIINFIAIRYAIVPADHDHRYGHG 78 (306)
T ss_dssp HTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCCCchh
Confidence 44455555554555555555555555666653
No 7
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=3.26 E-value=5e+02 Score=13.96 Aligned_cols=10 Identities=20% Similarity=0.394 Sum_probs=8.0
Q ss_pred HHHHHHHHHh
Q 029590 58 LNCLITMWYG 67 (191)
Q Consensus 58 ~n~~lWl~YG 67 (191)
+.+.+|+..|
T Consensus 9 l~aa~wF~WG 18 (27)
T 2nr1_A 9 LSSAMWFSWG 18 (27)
T ss_dssp HHHHHHHHHH
T ss_pred hhhhHHHhhH
Confidence 5677899998
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=2.89 E-value=1.9e+03 Score=17.58 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=21.0
Q ss_pred HHHHHHHHHHccHHHHHHHHHhcccCcccchhHHH-HHHHHHHHHHHh
Q 029590 21 GNIFAFGLFVSPVPTFRRIIRNHSTEEFSGLPYVY-ALLNCLITMWYG 67 (191)
Q Consensus 21 a~v~si~mflSPlp~~~~I~k~kst~~~s~~p~v~-~~~n~~lWl~YG 67 (191)
++......|..+.-...+.+|++..+..+..+.+. ...-..+|..|.
T Consensus 357 ~~~~~~~~y~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 357 SVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSGGGCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccchhHHHHHHHHHHHHHHHHH
Confidence 33444455555555556655554311222222222 222334666666
No 9
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=2.39 E-value=2.1e+03 Score=16.74 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=16.8
Q ss_pred ehhhhhhHHHHhhhheeecccccccccccccc
Q 029590 82 NSIGAAFQLVYIILFITYTEKDKKVSYPFSHM 113 (191)
Q Consensus 82 N~~G~~l~~~yl~v~~~y~~~~~~~~~~~~~~ 113 (191)
+.+.-+++..-..+-.+..+++...++|+||-
T Consensus 38 hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~ 69 (283)
T 3h90_A 38 DSLVDIGASLTNLLVVRYSLQPADDNHSFGHG 69 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSSCSSCST
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Confidence 44444555544444445555554455667764
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=2.33 E-value=1.2e+03 Score=13.71 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=9.8
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 029590 8 QALTVLKDAVGIAGNIFAFGL 28 (191)
Q Consensus 8 ~~~~~~~~vvg~la~v~si~m 28 (191)
+++..-.-..|+++.++.++.
T Consensus 5 ~~s~~~aIA~gVVgGv~~v~i 25 (44)
T 2l2t_A 5 QHARTPLIAAGVIGGLFILVI 25 (44)
T ss_dssp SSCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEeehHHHHHHHH
Confidence 333333445555555544443
Done!