Query 029590
Match_columns 191
No_of_seqs 164 out of 1114
Neff 6.4
Searched_HMMs 13730
Date Tue Mar 26 01:26:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029590.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029590hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lv3a_ g.39.1.9 (A:) Hypothet 6.4 96 0.007 18.6 1.4 14 127-140 22-35 (65)
2 d1c6wa_ g.3.6.2 (A:) Maurocalc 6.0 66 0.0048 16.7 0.3 14 112-125 4-17 (33)
3 d1uf9a_ c.37.1.1 (A:) Dephosph 4.1 1.4E+02 0.0099 20.1 1.0 20 1-20 4-23 (191)
4 d1ppjc1 f.32.1.1 (C:261-379) M 4.1 2.2E+02 0.016 18.7 2.2 40 3-42 75-115 (119)
5 d2croa_ a.35.1.2 (A:) cro 434 4.1 2E+02 0.015 16.0 1.7 36 32-67 29-64 (65)
6 d3cx5c1 f.32.1.1 (C:262-385) M 4.0 2.2E+02 0.016 18.7 2.2 40 3-42 75-115 (124)
7 d2axtm1 f.23.35.1 (M:1-36) Pho 3.3 2.4E+02 0.018 14.8 1.4 15 81-95 3-17 (36)
8 d1rzhh2 f.23.10.1 (H:11-35) Ph 2.8 3.8E+02 0.027 12.8 1.7 9 59-67 4-12 (26)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 2.7 3.3E+02 0.024 13.3 1.4 16 84-99 10-25 (30)
10 d1xioa_ f.13.1.1 (A:) Sensory 2.4 9.2E+02 0.067 16.5 5.3 14 54-67 167-180 (226)
No 1
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=6.42 E-value=96 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=11.8
Q ss_pred cccccchhhHHHHH
Q 029590 127 NQFFPLCSRQVRML 140 (191)
Q Consensus 127 ~~~~~~~~~~~~~~ 140 (191)
|.++||++.+-+.+
T Consensus 22 ~~~rPFCS~RCk~I 35 (65)
T d1lv3a_ 22 SPFRPFCSKRCQLI 35 (65)
T ss_dssp SSCCSSSSHHHHHH
T ss_pred CCcCCchhHhhhhc
Confidence 57899999998865
No 2
>d1c6wa_ g.3.6.2 (A:) Maurocalcin {Scorpio maurus [TaxId: 53956]}
Probab=6.01 E-value=66 Score=16.66 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=10.8
Q ss_pred ccchhhcccccccc
Q 029590 112 HMHLVYCSGSAICS 125 (191)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (191)
..|+.||+.+.-|+
T Consensus 4 lphlkrcken~dcc 17 (33)
T d1c6wa_ 4 LPHLKLCKENKDCC 17 (33)
T ss_dssp CSSCCEESSGGGST
T ss_pred hHHHHHHHhccchH
Confidence 35888998887776
No 3
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=4.09 E-value=1.4e+02 Score=20.10 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=13.3
Q ss_pred CeeeecccchHHHHHHHHHH
Q 029590 1 MILTITYQALTVLKDAVGIA 20 (191)
Q Consensus 1 ~~~g~~~~~~~~~~~vvg~l 20 (191)
||.|+||...+-..++...+
T Consensus 4 ~IIgitG~~gSGKstva~~l 23 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL 23 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 68899997766555554443
No 4
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.08 E-value=2.2e+02 Score=18.68 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=24.4
Q ss_pred eeecc-cchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Q 029590 3 LTITY-QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRN 42 (191)
Q Consensus 3 ~g~~~-~~~~~~~~vvg~la~v~si~mflSPlp~~~~I~k~ 42 (191)
||.-| |..|.--..+|.++++.-.+.++--+|...++.|+
T Consensus 75 L~wlG~~p~e~p~~~~gqi~tv~YF~~flillP~~~~~E~~ 115 (119)
T d1ppjc1 75 LTWIGGQPVEHPYITIGQLASVLYFLLILVLMPTAGTIENK 115 (119)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344 55556666677777777766665555555555554
No 5
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=4.07 E-value=2e+02 Score=15.99 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=18.7
Q ss_pred cHHHHHHHHHhcccCcccchhHHHHHHHHHHHHHHh
Q 029590 32 PVPTFRRIIRNHSTEEFSGLPYVYALLNCLITMWYG 67 (191)
Q Consensus 32 Plp~~~~I~k~kst~~~s~~p~v~~~~n~~lWl~YG 67 (191)
+-.++.++.+.++...-...-..-.+-...-|+.+|
T Consensus 29 s~~ti~~~E~g~~~~~~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 29 KQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp CHHHHHHHHTTCCSSCTTHHHHHHHTTSCHHHHHHC
T ss_pred CHhHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHhhC
Confidence 356677777766543322222222333446688777
No 6
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.02 E-value=2.2e+02 Score=18.71 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=26.2
Q ss_pred eeecc-cchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHh
Q 029590 3 LTITY-QALTVLKDAVGIAGNIFAFGLFVSPVPTFRRIIRN 42 (191)
Q Consensus 3 ~g~~~-~~~~~~~~vvg~la~v~si~mflSPlp~~~~I~k~ 42 (191)
||.-| |..+.--..+|.++++.-.+.|+--+|-+.+..|+
T Consensus 75 LtwlG~~p~e~p~~~~gqi~s~~YF~~Fli~~Pl~s~~e~~ 115 (124)
T d3cx5c1 75 LGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENV 115 (124)
T ss_dssp HHHHHTSCSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 55666677778888887777776656666665554
No 7
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.34 E-value=2.4e+02 Score=14.78 Aligned_cols=15 Identities=20% Similarity=0.576 Sum_probs=9.5
Q ss_pred eehhhhhhHHHHhhh
Q 029590 81 VNSIGAAFQLVYIIL 95 (191)
Q Consensus 81 ~N~~G~~l~~~yl~v 95 (191)
+|..|++....++.+
T Consensus 3 vN~Lg~iAt~LFilv 17 (36)
T d2axtm1 3 VNQLGLIATALFVLV 17 (36)
T ss_dssp CCTTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 477777766665554
No 8
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.79 E-value=3.8e+02 Score=12.84 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=4.5
Q ss_pred HHHHHHHHh
Q 029590 59 NCLITMWYG 67 (191)
Q Consensus 59 n~~lWl~YG 67 (191)
+..+|+.++
T Consensus 4 slaiw~fw~ 12 (26)
T d1rzhh2 4 SLAIYSFWI 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334555555
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.73 E-value=3.3e+02 Score=13.34 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=8.8
Q ss_pred hhhhhHHHHhhhheee
Q 029590 84 IGAAFQLVYIILFITY 99 (191)
Q Consensus 84 ~G~~l~~~yl~v~~~y 99 (191)
+..++++++..+|++-
T Consensus 10 fac~i~lfffaiffre 25 (30)
T d2axtt1 10 FACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4455556666665543
No 10
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.40 E-value=9.2e+02 Score=16.52 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh
Q 029590 54 VYALLNCLITMWYG 67 (191)
Q Consensus 54 v~~~~n~~lWl~YG 67 (191)
........+|..|+
T Consensus 167 ~l~~~~~v~W~~YP 180 (226)
T d1xioa_ 167 KLVTYFTVLWIGYP 180 (226)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34556678999998
Done!