Query 029591
Match_columns 191
No_of_seqs 149 out of 530
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 01:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ytb_A Protein (tata binding p 100.0 8.8E-70 3E-74 442.5 23.7 179 10-188 1-179 (180)
2 3eik_A Tata-box-binding protei 100.0 9.8E-69 3.4E-73 446.3 24.3 179 10-188 39-217 (218)
3 1rm1_A Tata-box binding protei 100.0 4.8E-67 1.6E-71 442.3 24.0 180 10-189 61-240 (240)
4 2z8u_A Tata-box-binding protei 100.0 9E-66 3.1E-70 421.4 23.7 176 12-188 11-187 (188)
5 1ais_A TBP, protein (tata-bind 100.0 3.4E-65 1.2E-69 416.2 23.3 175 11-186 6-181 (182)
6 1mp9_A Tata-binding protein; t 100.0 5.5E-65 1.9E-69 419.7 24.7 179 10-189 9-188 (198)
7 1rm1_A Tata-box binding protei 100.0 2.8E-33 9.7E-38 236.2 12.1 123 60-187 25-147 (240)
8 2z8u_A Tata-box-binding protei 100.0 8.2E-29 2.8E-33 202.5 12.1 86 12-97 102-187 (188)
9 1mp9_A Tata-binding protein; t 100.0 2E-28 6.9E-33 201.6 12.3 87 12-98 102-188 (198)
10 1ais_A TBP, protein (tata-bind 100.0 2.6E-28 8.8E-33 198.6 11.6 85 11-95 97-181 (182)
11 1ytb_A Protein (tata binding p 99.9 1.1E-27 3.9E-32 194.5 11.4 84 103-187 4-87 (180)
12 3eik_A Tata-box-binding protei 99.9 2.3E-25 7.9E-30 185.3 12.3 84 12-95 131-215 (218)
13 2d0b_A RNAse HIII, ribonucleas 92.6 0.12 4.1E-06 44.5 4.8 33 46-78 27-59 (310)
14 3vn5_A RNAse HIII, ribonucleas 92.3 0.04 1.4E-06 46.4 1.3 35 46-80 26-60 (257)
15 3krm_A Insulin-like growth fac 90.5 3 0.0001 31.5 10.2 30 160-191 133-162 (163)
16 3vn5_A RNAse HIII, ribonucleas 89.8 0.19 6.3E-06 42.3 3.0 40 135-174 24-63 (257)
17 2d0b_A RNAse HIII, ribonucleas 89.8 0.48 1.7E-05 40.7 5.7 37 137-173 27-63 (310)
18 2av4_A Thioredoxin-like protei 81.4 1.2 4.1E-05 34.8 3.5 33 151-183 97-141 (160)
19 2jzx_A Poly(RC)-binding protei 80.8 9.5 0.00032 28.5 8.5 99 69-185 49-159 (160)
20 1t00_A Thioredoxin, TRX; redox 72.9 3.7 0.00013 27.8 3.8 29 152-180 80-110 (112)
21 2trx_A Thioredoxin; electron t 70.9 7.2 0.00025 26.0 4.9 28 152-179 77-106 (108)
22 3gnj_A Thioredoxin domain prot 69.8 8.5 0.00029 25.7 5.1 29 152-180 79-109 (111)
23 2ctf_A Vigilin; K homology typ 69.3 5.9 0.0002 28.2 4.3 41 139-189 56-96 (102)
24 1fb6_A Thioredoxin M; electron 69.3 5.7 0.00019 26.2 4.0 28 152-179 75-104 (105)
25 1thx_A Thioredoxin, thioredoxi 68.9 6.4 0.00022 26.4 4.3 29 152-180 82-112 (115)
26 2o8v_B Thioredoxin 1; disulfid 68.8 7.8 0.00027 27.5 4.9 28 152-179 97-126 (128)
27 1dby_A Chloroplast thioredoxin 68.3 7.2 0.00025 25.9 4.4 28 152-179 76-105 (107)
28 2e0q_A Thioredoxin; electron t 67.4 8.4 0.00029 25.1 4.5 29 152-180 72-102 (104)
29 1w4v_A Thioredoxin, mitochondr 67.0 9.2 0.00032 26.4 4.9 28 152-179 88-117 (119)
30 3tco_A Thioredoxin (TRXA-1); d 66.3 7.4 0.00025 25.8 4.1 28 152-179 78-107 (109)
31 2i4a_A Thioredoxin; acidophIle 66.2 7.7 0.00026 25.6 4.2 27 152-178 77-105 (107)
32 1ep7_A Thioredoxin CH1, H-type 64.7 11 0.00037 25.2 4.8 28 152-180 81-110 (112)
33 2yzu_A Thioredoxin; redox prot 64.4 5.4 0.00018 26.4 3.1 29 152-180 75-105 (109)
34 3hz4_A Thioredoxin; NYSGXRC, P 63.8 12 0.0004 26.8 5.1 33 152-184 81-115 (140)
35 3gix_A Thioredoxin-like protei 63.7 14 0.00047 27.1 5.5 32 153-184 81-124 (149)
36 1v98_A Thioredoxin; oxidoreduc 63.4 11 0.00039 26.7 4.9 29 152-180 107-137 (140)
37 2es7_A Q8ZP25_salty, putative 63.1 8.1 0.00028 28.5 4.1 30 152-181 94-125 (142)
38 3m9j_A Thioredoxin; oxidoreduc 61.9 9.5 0.00032 25.1 4.0 27 152-179 76-104 (105)
39 2qgv_A Hydrogenase-1 operon pr 60.5 13 0.00045 28.0 4.9 29 152-180 94-124 (140)
40 3p2a_A Thioredoxin 2, putative 60.0 13 0.00043 26.7 4.6 30 152-181 112-143 (148)
41 2ppt_A Thioredoxin-2; thiredox 59.9 14 0.00046 27.3 4.9 29 152-180 121-151 (155)
42 2jvf_A De novo protein M7; tet 59.7 17 0.00059 24.9 4.9 24 75-98 56-79 (96)
43 3d22_A TRXH4, thioredoxin H-ty 59.6 15 0.00051 25.8 4.9 30 152-182 102-133 (139)
44 1r26_A Thioredoxin; redox-acti 59.4 16 0.00053 25.8 5.0 28 152-180 93-122 (125)
45 2opv_A KHSRP protein; KH domai 59.4 12 0.0004 25.3 4.1 33 150-184 44-84 (85)
46 2j23_A Thioredoxin; immune pro 59.3 9.2 0.00031 26.6 3.7 27 152-179 91-119 (121)
47 2voc_A Thioredoxin; electron t 58.2 14 0.00047 25.1 4.4 27 152-178 74-102 (112)
48 3zzx_A Thioredoxin; oxidoreduc 57.9 14 0.00048 25.5 4.4 25 152-177 76-102 (105)
49 1syr_A Thioredoxin; SGPP, stru 57.9 7.6 0.00026 26.4 3.0 27 152-179 82-110 (112)
50 2cte_A Vigilin; K homology typ 57.8 13 0.00044 25.8 4.1 29 158-188 59-87 (94)
51 3qfa_C Thioredoxin; protein-pr 57.3 11 0.00036 26.1 3.7 27 152-179 87-115 (116)
52 2vlu_A Thioredoxin, thioredoxi 56.3 14 0.00048 25.2 4.2 28 152-180 90-119 (122)
53 4euy_A Uncharacterized protein 56.3 8.9 0.00031 25.7 3.1 28 152-179 74-103 (105)
54 2opv_A KHSRP protein; KH domai 56.0 15 0.00052 24.7 4.2 33 59-93 44-84 (85)
55 2ctf_A Vigilin; K homology typ 55.6 19 0.00066 25.4 4.9 28 66-95 66-93 (102)
56 3gnj_A Thioredoxin domain prot 55.6 20 0.00069 23.7 4.8 29 61-89 79-109 (111)
57 1nsw_A Thioredoxin, TRX; therm 55.3 6.8 0.00023 26.0 2.3 27 152-178 74-102 (105)
58 1oaz_A Thioredoxin 1; immune s 54.7 7 0.00024 27.6 2.4 26 153-178 93-120 (123)
59 1dby_A Chloroplast thioredoxin 54.5 19 0.00066 23.7 4.6 28 61-88 76-105 (107)
60 1t00_A Thioredoxin, TRX; redox 54.4 16 0.00054 24.4 4.2 28 61-88 80-109 (112)
61 2qsi_A Putative hydrogenase ex 54.3 19 0.00066 26.9 4.9 30 151-180 91-122 (137)
62 3tco_A Thioredoxin (TRXA-1); d 53.9 15 0.00051 24.1 3.9 28 61-88 78-107 (109)
63 2ggt_A SCO1 protein homolog, m 53.8 24 0.00083 25.1 5.3 36 149-187 127-164 (164)
64 2i1u_A Thioredoxin, TRX, MPT46 53.6 2.9 0.0001 28.7 0.2 28 152-179 87-116 (121)
65 2ctm_A Vigilin; K homology typ 53.4 18 0.00063 25.1 4.4 38 150-189 47-89 (95)
66 2trx_A Thioredoxin; electron t 53.3 22 0.00074 23.5 4.7 28 61-88 77-106 (108)
67 1faa_A Thioredoxin F; electron 53.2 20 0.00067 24.6 4.6 27 152-179 94-122 (124)
68 2oe3_A Thioredoxin-3; electron 53.0 11 0.00039 25.9 3.3 25 152-177 86-112 (114)
69 2pu9_C TRX-F, thioredoxin F-ty 52.5 20 0.00068 24.0 4.4 27 152-179 81-109 (111)
70 2o8v_B Thioredoxin 1; disulfid 51.3 22 0.00076 25.0 4.7 28 61-88 97-126 (128)
71 2a4v_A Peroxiredoxin DOT5; yea 51.3 25 0.00086 25.3 5.1 37 151-188 120-158 (159)
72 2kuc_A Putative disulphide-iso 51.0 22 0.00074 24.5 4.5 28 152-179 89-119 (130)
73 1fb6_A Thioredoxin M; electron 51.0 23 0.00079 23.0 4.5 28 61-88 75-104 (105)
74 1thx_A Thioredoxin, thioredoxi 50.5 25 0.00086 23.3 4.7 28 61-88 82-111 (115)
75 1kng_A Thiol:disulfide interch 50.4 19 0.00065 25.4 4.2 33 151-183 120-154 (156)
76 3d6i_A Monothiol glutaredoxin- 50.3 29 0.001 23.1 5.0 29 153-182 80-110 (112)
77 2i4a_A Thioredoxin; acidophIle 49.4 20 0.00069 23.4 4.0 27 61-87 77-105 (107)
78 2xc2_A Thioredoxinn; oxidoredu 49.3 20 0.00069 24.3 4.1 27 152-179 88-116 (117)
79 2fwh_A Thiol:disulfide interch 49.2 7.3 0.00025 27.7 1.7 31 152-182 94-129 (134)
80 2l6c_A Thioredoxin; oxidoreduc 49.2 14 0.00049 25.0 3.3 28 152-179 75-104 (110)
81 2o5a_A BH1328 protein; BHR21, 49.1 24 0.00081 26.2 4.6 30 69-99 37-66 (125)
82 2vim_A Thioredoxin, TRX; thior 49.0 22 0.00074 23.2 4.1 27 152-179 75-103 (104)
83 2es7_A Q8ZP25_salty, putative 48.8 21 0.00071 26.2 4.3 29 60-88 93-123 (142)
84 4euy_A Uncharacterized protein 48.6 13 0.00044 24.8 2.9 29 60-88 73-103 (105)
85 1xfl_A Thioredoxin H1; AT3G510 47.5 27 0.00093 24.3 4.6 27 152-179 94-122 (124)
86 1w4v_A Thioredoxin, mitochondr 47.5 29 0.00098 23.7 4.7 28 61-88 88-117 (119)
87 2id1_A Hypothetical protein; a 47.3 26 0.0009 26.2 4.6 30 69-99 37-66 (130)
88 2e0q_A Thioredoxin; electron t 46.9 32 0.0011 22.0 4.7 28 61-88 72-101 (104)
89 2l57_A Uncharacterized protein 46.3 28 0.00096 23.9 4.5 28 152-179 85-115 (126)
90 1kng_A Thiol:disulfide interch 46.0 25 0.00085 24.7 4.2 33 60-92 120-154 (156)
91 3die_A Thioredoxin, TRX; elect 45.7 17 0.00058 23.8 3.1 27 152-178 76-104 (106)
92 1v98_A Thioredoxin; oxidoreduc 45.5 27 0.00091 24.6 4.3 28 61-88 107-136 (140)
93 1x5d_A Protein disulfide-isome 45.4 32 0.0011 23.5 4.7 30 152-181 86-117 (133)
94 2b1k_A Thiol:disulfide interch 45.3 26 0.00088 25.3 4.3 34 151-184 128-163 (168)
95 3p2a_A Thioredoxin 2, putative 45.2 30 0.001 24.6 4.6 29 61-89 112-142 (148)
96 3uvt_A Thioredoxin domain-cont 44.8 29 0.00098 22.8 4.2 26 153-178 82-109 (111)
97 3gix_A Thioredoxin-like protei 44.8 37 0.0013 24.6 5.2 34 61-94 80-125 (149)
98 1ti3_A Thioredoxin H, PTTRXH1; 44.5 32 0.0011 22.7 4.4 29 152-181 82-112 (113)
99 2in3_A Hypothetical protein; D 44.4 29 0.00098 26.4 4.6 29 152-180 179-209 (216)
100 3emx_A Thioredoxin; structural 43.9 27 0.00091 24.7 4.1 30 152-181 95-126 (135)
101 3qou_A Protein YBBN; thioredox 43.8 19 0.00064 28.8 3.6 30 152-181 83-114 (287)
102 3hz4_A Thioredoxin; NYSGXRC, P 43.7 48 0.0016 23.4 5.5 34 61-94 81-116 (140)
103 3m9j_A Thioredoxin; oxidoreduc 42.7 36 0.0012 22.1 4.4 27 61-88 76-104 (105)
104 2hh2_A KH-type splicing regula 42.1 21 0.00071 25.3 3.2 27 159-187 55-81 (107)
105 2qgv_A Hydrogenase-1 operon pr 42.0 36 0.0012 25.5 4.7 29 60-88 93-123 (140)
106 1zzo_A RV1677; thioredoxin fol 41.8 27 0.00092 23.6 3.8 29 152-180 104-134 (136)
107 1xwb_A Thioredoxin; dimerizati 41.7 33 0.0011 22.2 4.1 26 152-178 77-104 (106)
108 2axy_A Poly(RC)-binding protei 41.3 43 0.0015 21.8 4.5 33 151-185 36-72 (73)
109 2ppt_A Thioredoxin-2; thiredox 41.3 37 0.0013 24.8 4.7 28 61-88 121-150 (155)
110 3qfa_C Thioredoxin; protein-pr 41.0 38 0.0013 23.1 4.5 27 61-88 87-115 (116)
111 2vm1_A Thioredoxin, thioredoxi 41.0 45 0.0015 22.1 4.8 28 152-180 84-113 (118)
112 2voc_A Thioredoxin; electron t 41.0 29 0.001 23.3 3.8 25 61-85 74-100 (112)
113 1lu4_A Soluble secreted antige 40.9 23 0.00079 24.1 3.3 29 152-180 102-135 (136)
114 2qsi_A Putative hydrogenase ex 40.2 46 0.0016 24.8 5.0 30 60-89 91-122 (137)
115 1zma_A Bacterocin transport ac 40.2 21 0.00072 24.3 3.0 25 152-176 90-116 (118)
116 1nho_A Probable thioredoxin; b 40.2 32 0.0011 21.4 3.7 22 158-179 62-83 (85)
117 1ep7_A Thioredoxin CH1, H-type 40.1 43 0.0015 22.0 4.6 27 61-88 81-109 (112)
118 2av4_A Thioredoxin-like protei 39.8 43 0.0015 25.9 4.9 35 60-94 97-143 (160)
119 1x4m_A FAR upstream element bi 39.5 22 0.00075 24.5 2.9 35 150-186 45-87 (94)
120 1fo5_A Thioredoxin; disulfide 39.1 20 0.00068 22.5 2.5 22 158-179 63-84 (85)
121 2p2r_A Poly(RC)-binding protei 38.9 43 0.0015 21.8 4.2 25 158-184 49-73 (76)
122 2b1k_A Thiol:disulfide interch 38.9 43 0.0015 24.0 4.7 34 60-93 128-163 (168)
123 2ctm_A Vigilin; K homology typ 38.4 47 0.0016 22.9 4.6 35 59-95 47-86 (95)
124 2l5l_A Thioredoxin; structural 38.3 31 0.0011 24.2 3.7 28 153-180 96-125 (136)
125 3dml_A Putative uncharacterize 38.3 63 0.0022 23.2 5.4 32 151-182 78-111 (116)
126 1gh2_A Thioredoxin-like protei 38.2 38 0.0013 22.3 4.0 27 152-179 77-105 (107)
127 3emx_A Thioredoxin; structural 37.8 46 0.0016 23.3 4.6 28 61-88 95-124 (135)
128 1zzk_A Heterogeneous nuclear r 37.8 39 0.0013 22.4 4.0 28 158-187 51-78 (82)
129 3f3q_A Thioredoxin-1; His TAG, 37.8 50 0.0017 22.1 4.6 27 152-179 80-108 (109)
130 2b7k_A SCO1 protein; metalloch 36.8 34 0.0012 26.0 3.9 43 140-182 136-180 (200)
131 2ctk_A Vigilin; K homology typ 36.7 31 0.0011 24.3 3.4 37 150-188 47-87 (104)
132 3d22_A TRXH4, thioredoxin H-ty 36.7 52 0.0018 22.8 4.7 27 61-88 102-130 (139)
133 3ups_A Iojap-like protein; PSI 36.4 34 0.0012 25.7 3.7 31 67-98 51-81 (136)
134 1j5k_A Heterogeneous nuclear r 36.0 57 0.002 22.0 4.6 27 158-186 58-84 (89)
135 1qgv_A Spliceosomal protein U5 35.9 45 0.0015 23.9 4.3 20 163-182 102-122 (142)
136 2j23_A Thioredoxin; immune pro 35.5 50 0.0017 22.5 4.4 27 61-88 91-119 (121)
137 1r26_A Thioredoxin; redox-acti 35.2 59 0.002 22.6 4.8 27 61-88 93-121 (125)
138 1x4m_A FAR upstream element bi 35.0 27 0.00092 24.0 2.8 35 59-95 45-87 (94)
139 1zzk_A Heterogeneous nuclear r 35.0 58 0.002 21.5 4.4 26 68-95 52-77 (82)
140 1oaz_A Thioredoxin 1; immune s 34.0 28 0.00096 24.3 2.8 26 61-86 92-119 (123)
141 2axy_A Poly(RC)-binding protei 33.9 74 0.0025 20.6 4.8 33 60-94 36-72 (73)
142 2yj7_A LPBCA thioredoxin; oxid 40.1 8.6 0.0003 25.1 0.0 28 152-179 76-105 (106)
143 2rli_A SCO2 protein homolog, m 33.8 54 0.0018 23.4 4.5 32 150-181 131-164 (171)
144 2dj1_A Protein disulfide-isome 33.8 54 0.0018 22.7 4.4 28 153-180 95-123 (140)
145 2kuc_A Putative disulphide-iso 33.6 66 0.0022 21.9 4.8 28 61-88 89-119 (130)
146 2l57_A Uncharacterized protein 33.4 62 0.0021 22.0 4.6 27 61-87 85-114 (126)
147 2rem_A Disulfide oxidoreductas 32.4 58 0.002 24.1 4.6 26 156-182 160-185 (193)
148 3ul3_B Thioredoxin, thioredoxi 32.1 35 0.0012 23.6 3.1 25 153-177 100-126 (128)
149 3h93_A Thiol:disulfide interch 31.9 54 0.0018 24.4 4.3 26 158-183 159-186 (192)
150 2ctl_A Vigilin; K homology typ 31.5 62 0.0021 22.3 4.3 36 151-188 48-90 (97)
151 4dvc_A Thiol:disulfide interch 31.5 38 0.0013 24.7 3.3 27 154-180 153-181 (184)
152 2znm_A Thiol:disulfide interch 31.4 49 0.0017 24.6 4.0 28 156-183 155-182 (195)
153 1x4n_A FAR upstream element bi 31.3 83 0.0028 21.3 4.9 28 159-188 60-87 (92)
154 2ctj_A Vigilin; K homology typ 31.1 45 0.0016 23.1 3.5 35 59-95 48-86 (95)
155 1ec6_A RNA-binding protein NOV 30.9 50 0.0017 22.1 3.6 28 158-187 50-77 (87)
156 2a4v_A Peroxiredoxin DOT5; yea 30.6 76 0.0026 22.6 4.9 35 60-95 120-156 (159)
157 2fwh_A Thiol:disulfide interch 30.3 30 0.001 24.3 2.5 28 61-88 94-126 (134)
158 3dxb_A Thioredoxin N-terminall 30.2 67 0.0023 24.7 4.7 29 152-180 87-117 (222)
159 2in3_A Hypothetical protein; D 29.7 71 0.0024 24.1 4.8 29 61-89 179-209 (216)
160 1x5d_A Protein disulfide-isome 29.0 82 0.0028 21.3 4.6 28 61-88 86-115 (133)
161 1a8l_A Protein disulfide oxido 28.9 79 0.0027 23.9 4.9 117 61-179 81-224 (226)
162 1ilo_A Conserved hypothetical 28.8 38 0.0013 20.8 2.5 18 158-175 57-75 (77)
163 1mek_A Protein disulfide isome 28.4 38 0.0013 22.4 2.7 26 153-178 85-114 (120)
164 2hh2_A KH-type splicing regula 28.4 45 0.0015 23.4 3.1 25 68-94 55-79 (107)
165 2ctl_A Vigilin; K homology typ 28.3 87 0.003 21.6 4.6 35 59-95 47-88 (97)
166 3apq_A DNAJ homolog subfamily 28.1 45 0.0016 25.3 3.3 30 152-181 171-202 (210)
167 4f9u_A CG32412; alpha/beta hyd 28.0 57 0.0019 26.8 4.1 35 80-114 30-74 (312)
168 2jvz_A KH type-splicing, FAR u 27.8 90 0.0031 22.8 4.9 28 158-187 135-162 (164)
169 3kij_A Probable glutathione pe 27.6 56 0.0019 24.0 3.7 34 152-185 139-174 (180)
170 2l5o_A Putative thioredoxin; s 27.6 58 0.002 22.7 3.6 29 153-181 111-141 (153)
171 2cte_A Vigilin; K homology typ 27.1 81 0.0028 21.5 4.2 27 67-95 59-85 (94)
172 3feu_A Putative lipoprotein; a 27.0 56 0.0019 24.7 3.6 24 157-180 158-183 (185)
173 3hz8_A Thiol:disulfide interch 27.0 78 0.0027 23.9 4.5 28 157-185 160-187 (193)
174 3lwa_A Secreted thiol-disulfid 26.7 78 0.0027 23.0 4.4 30 151-180 149-180 (183)
175 2jro_A Uncharacterized protein 26.6 44 0.0015 22.9 2.6 35 63-98 32-66 (78)
176 3kh7_A Thiol:disulfide interch 26.3 1E+02 0.0035 22.5 5.0 34 60-93 135-170 (176)
177 3ph9_A Anterior gradient prote 26.2 36 0.0012 25.4 2.4 37 152-188 103-149 (151)
178 2hh3_A KH-type splicing regula 26.1 1.1E+02 0.0037 21.5 4.8 26 160-187 57-82 (106)
179 3krm_A Insulin-like growth fac 25.3 95 0.0032 22.8 4.6 35 59-95 115-157 (163)
180 3it4_B Arginine biosynthesis b 25.2 53 0.0018 26.5 3.2 23 69-91 88-110 (205)
181 1sen_A Thioredoxin-like protei 25.1 54 0.0019 24.1 3.2 32 152-183 106-150 (164)
182 2dbc_A PDCL2, unnamed protein 25.1 52 0.0018 23.2 3.0 27 152-178 83-118 (135)
183 4evm_A Thioredoxin family prot 25.0 70 0.0024 21.2 3.6 27 153-179 108-137 (138)
184 2hh3_A KH-type splicing regula 24.9 1.4E+02 0.0049 20.8 5.3 25 69-95 57-81 (106)
185 1x5e_A Thioredoxin domain cont 24.9 68 0.0023 21.8 3.5 27 153-179 81-108 (126)
186 2ctj_A Vigilin; K homology typ 24.6 61 0.0021 22.4 3.2 26 160-187 62-87 (95)
187 2fgx_A Putative thioredoxin; N 24.5 51 0.0018 23.3 2.8 25 152-176 82-106 (107)
188 3ha9_A Uncharacterized thiored 24.5 63 0.0021 23.0 3.4 28 153-180 135-163 (165)
189 2b5x_A YKUV protein, TRXY; thi 24.3 1E+02 0.0034 21.0 4.4 29 152-180 113-144 (148)
190 3i96_A Ethanolamine utilizatio 24.0 1E+02 0.0036 22.6 4.4 30 67-98 74-104 (119)
191 3c4b_A Endoribonuclease dicer; 23.8 2.8E+02 0.0095 22.1 7.7 41 54-94 221-263 (265)
192 3kij_A Probable glutathione pe 23.6 87 0.003 22.9 4.1 33 61-93 139-173 (180)
193 1we8_A Tudor and KH domain con 23.4 45 0.0015 23.2 2.3 27 158-186 61-87 (104)
194 3h79_A Thioredoxin-like protei 23.3 79 0.0027 21.6 3.6 26 153-178 96-125 (127)
195 1dtj_A RNA-binding neurooncolo 23.2 54 0.0018 21.1 2.5 25 158-184 50-74 (76)
196 3c7m_A Thiol:disulfide interch 22.9 82 0.0028 23.1 3.8 25 156-180 167-193 (195)
197 3u27_C Microcompartments prote 22.9 78 0.0027 25.7 3.9 29 158-186 83-112 (220)
198 2ctk_A Vigilin; K homology typ 22.9 99 0.0034 21.6 4.1 35 59-95 47-85 (104)
199 2wz9_A Glutaredoxin-3; protein 22.5 1.2E+02 0.004 21.6 4.6 28 152-180 88-117 (153)
200 2h30_A Thioredoxin, peptide me 22.5 31 0.0011 24.5 1.3 31 153-183 126-158 (164)
201 1whq_A RNA helicase A; double- 22.4 1.2E+02 0.0042 21.0 4.4 41 57-97 35-78 (99)
202 2ggt_A SCO1 protein homolog, m 22.4 1.4E+02 0.0048 20.8 5.0 30 60-89 129-160 (164)
203 3igm_B PF14_0633 protein; AP2 22.0 1.4E+02 0.0048 20.3 4.4 56 39-98 9-64 (77)
204 3lwa_A Secreted thiol-disulfid 21.9 1.3E+02 0.0044 21.8 4.8 30 60-89 149-180 (183)
205 1rre_A ATP-dependent protease 21.8 1.3E+02 0.0043 23.6 4.9 40 66-106 36-80 (200)
206 2opa_A Probable tautomerase YW 21.7 1.4E+02 0.0047 17.8 5.9 31 70-100 5-36 (61)
207 3kh7_A Thiol:disulfide interch 21.6 1.2E+02 0.0042 22.1 4.6 34 151-184 135-170 (176)
208 1vra_B Arginine biosynthesis b 21.5 56 0.0019 26.5 2.7 21 70-90 95-115 (215)
209 3qou_A Protein YBBN; thioredox 21.4 1.1E+02 0.0037 24.1 4.5 27 61-87 83-111 (287)
210 3i96_A Ethanolamine utilizatio 21.3 1.1E+02 0.0037 22.5 4.1 26 158-185 74-99 (119)
211 3h93_A Thiol:disulfide interch 21.2 1.1E+02 0.0037 22.6 4.3 28 67-94 159-188 (192)
212 3iwl_A Copper transport protei 21.1 68 0.0023 19.6 2.6 24 155-178 34-57 (68)
213 2v4i_B Glutamate N-acetyltrans 21.1 58 0.002 26.4 2.7 21 70-90 88-108 (213)
214 1vig_A Vigilin; RNA-binding pr 21.0 80 0.0027 20.3 3.0 31 150-182 35-69 (71)
215 3rjs_A Dynein light chain moto 20.9 72 0.0025 21.8 2.9 28 128-159 62-89 (89)
216 2noc_A Putative periplasmic pr 20.8 55 0.0019 23.2 2.3 25 157-181 39-63 (99)
217 1xhk_A Putative protease LA ho 20.6 1.1E+02 0.0039 23.4 4.3 23 68-94 39-61 (187)
218 3ia1_A THIO-disulfide isomeras 20.5 1.3E+02 0.0043 20.9 4.3 29 151-179 112-142 (154)
219 3nec_A Profilin, inflammatory 20.4 1.6E+02 0.0054 22.6 5.1 42 56-97 118-166 (166)
220 3adg_A F21M12.9 protein; HYL1, 20.1 1.8E+02 0.0061 18.5 4.7 31 57-87 33-65 (73)
No 1
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=100.00 E-value=8.8e-70 Score=442.46 Aligned_cols=179 Identities=83% Similarity=1.271 Sum_probs=175.9
Q ss_pred cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~ 89 (191)
++++|+|+|||||++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus 1 ~~~~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~ 80 (180)
T 1ytb_A 1 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 80 (180)
T ss_dssp CCCCCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCH
Q 029591 90 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 169 (191)
Q Consensus 90 ~~l~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~ 169 (191)
++|+++|+++++.+|+|+|||||+|++|+|||+.||..|+++++||||+||||+||+.+|+++++||+||||+|||||++
T Consensus 81 ~~L~~lg~~~~~~~~~i~NIvas~dl~~~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~ 160 (180)
T 1ytb_A 81 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR 160 (180)
T ss_dssp HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccccceEEEEEEEEECCCccCHHHHHHhcccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 029591 170 DETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 170 ~~~~~a~~~i~~~L~~~r~ 188 (191)
+|+++|++.|+|+|.+||+
T Consensus 161 ~~~~~a~~~i~p~L~~~~~ 179 (180)
T 1ytb_A 161 EEIYQAFEAIYPVLSEFRK 179 (180)
T ss_dssp HHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999997
No 2
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=100.00 E-value=9.8e-69 Score=446.35 Aligned_cols=179 Identities=77% Similarity=1.209 Sum_probs=176.0
Q ss_pred cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~ 89 (191)
+|++|+|+||||+++++|+|||++||..++|+|||||+||||+||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus 39 ~~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~ 118 (218)
T 3eik_A 39 SGIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYA 118 (218)
T ss_dssp -CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCceEEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCH
Q 029591 90 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 169 (191)
Q Consensus 90 ~~l~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~ 169 (191)
++|+++|+++++.+|+|+|||||+|++|+|||+.||..++.+++||||+||||+||+.+|++|++||+||||+|||||++
T Consensus 119 ~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~ 198 (218)
T 3eik_A 119 KIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVR 198 (218)
T ss_dssp HHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 029591 170 DETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 170 ~~~~~a~~~i~~~L~~~r~ 188 (191)
+|+++|++.|+|+|.+|||
T Consensus 199 ~d~~~A~~~I~p~L~~frk 217 (218)
T 3eik_A 199 DDIYQAFNNIYPVLIQHRK 217 (218)
T ss_dssp HHHHHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999997
No 3
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=4.8e-67 Score=442.26 Aligned_cols=180 Identities=82% Similarity=1.267 Sum_probs=176.3
Q ss_pred cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~ 89 (191)
.++.|+|+||||+++++++|||++||..++|++||||+||||+||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus 61 ~~~~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~ 140 (240)
T 1rm1_A 61 SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYA 140 (240)
T ss_dssp CCCCCEEEEEEEEEECCSCCCHHHHHHHBTTEEECTTTCSEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCccCHHHHHhhCCCcEEcCcccceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCH
Q 029591 90 RIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 169 (191)
Q Consensus 90 ~~l~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~ 169 (191)
++|+++|+++++.+|+|+|||||+|++|+|||+.||..|+++++||||+||||+||+.+|+++++||+||||+|||||++
T Consensus 141 ~~L~~lg~~~~~~~f~IqNIVas~dl~f~I~Le~la~~~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~ 220 (240)
T 1rm1_A 141 RIIQKIGFAAKFTDFKIQNIVGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQR 220 (240)
T ss_dssp HHHHHHTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHTTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHHcCCCcccCcceEEEEEEEEeCCCccCHHHHHHhchhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 029591 170 DETYTAFENIYPVLTEFRKV 189 (191)
Q Consensus 170 ~~~~~a~~~i~~~L~~~r~~ 189 (191)
+|+++|++.|+|+|.+||++
T Consensus 221 ~~~~~Ai~~i~p~L~~~~~~ 240 (240)
T 1rm1_A 221 EEIYQAFEAIYPVLSEFRKM 240 (240)
T ss_dssp HHHHHHHHHHHHHHHHTBCC
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999974
No 4
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=100.00 E-value=9e-66 Score=421.38 Aligned_cols=176 Identities=36% Similarity=0.663 Sum_probs=164.0
Q ss_pred CeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHHH
Q 029591 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARI 91 (191)
Q Consensus 12 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~~ 91 (191)
.+++|+|||||++++|+|||++||..++|+||||++|||+++|+++|+++++||+||||+||||+|+++++.|+++++++
T Consensus 11 ~~~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAkS~e~a~~a~~~~~~~ 90 (188)
T 2z8u_A 11 PEIKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTGAKSKEEAEIAIKKIIKE 90 (188)
T ss_dssp CCCEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC-CcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCHH
Q 029591 92 IQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRD 170 (191)
Q Consensus 92 l~~~g~~-~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~~ 170 (191)
|+++|++ .++.+|+|+|||||+|++++|||+.|+..+ ++++||||+||||+||+.+|+++++||+||||+||||||++
T Consensus 91 L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~ 169 (188)
T 2z8u_A 91 LKDAGIDVIENPEIKIQNMVATADLGIEPNLDDIALMV-EGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEE 169 (188)
T ss_dssp HHHTTCCCCSSCCCEEEEEEEEEECSSCCCHHHHHHHS-TTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHH
T ss_pred HHhcCCCccccCceEEEEEEEEEecCCccCHHHHHhhC-cCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHH
Confidence 9999998 688899999999999999999999999886 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 029591 171 ETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 171 ~~~~a~~~i~~~L~~~r~ 188 (191)
|+++|++.|+|+|.+|++
T Consensus 170 ~~~~A~~~i~~~L~~~~~ 187 (188)
T 2z8u_A 170 DAKRALKKILDTIKEVQE 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999999985
No 5
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=100.00 E-value=3.4e-65 Score=416.22 Aligned_cols=175 Identities=38% Similarity=0.627 Sum_probs=170.6
Q ss_pred CCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHH
Q 029591 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR 90 (191)
Q Consensus 11 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~ 90 (191)
..+++|+|||||++++++|||++||..++|+||||++|||+++|+++|+++++||+||||+||||+|+++++.|++++++
T Consensus 6 ~~~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~ 85 (182)
T 1ais_A 6 KVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQ 85 (182)
T ss_dssp TCEEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC-CcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCH
Q 029591 91 IIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVR 169 (191)
Q Consensus 91 ~l~~~g~~-~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~ 169 (191)
+|+++|++ .++.+|+|+|||||++++++|||+.||..+ ++++||||+||||+||+.+|+++++||+||||+||||||+
T Consensus 86 ~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~ 164 (182)
T 1ais_A 86 KLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALTL-PNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSE 164 (182)
T ss_dssp HHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHHHHHHHS-TTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSH
T ss_pred HHHHcCCCcccccceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCH
Confidence 99999998 588999999999999999999999999886 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 029591 170 DETYTAFENIYPVLTEF 186 (191)
Q Consensus 170 ~~~~~a~~~i~~~L~~~ 186 (191)
+++++|+++|+|+|.+|
T Consensus 165 ~~~~~a~~~i~~~L~~~ 181 (182)
T 1ais_A 165 ADAWEAVRKLLRELDKY 181 (182)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999876
No 6
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=5.5e-65 Score=419.67 Aligned_cols=179 Identities=45% Similarity=0.699 Sum_probs=173.9
Q ss_pred cCCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHH
Q 029591 10 LGAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 10 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~ 89 (191)
.+++++|+|||||++++|+|||++||..++|++|||++|||++||+++|+++++||+||||+||||+|+++++.|+++++
T Consensus 9 ~~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGakS~e~a~~a~~~i~ 88 (198)
T 1mp9_A 9 YKAVVNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTGAKSTDELIKAVKRII 88 (198)
T ss_dssp CCCEEEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEECCSSHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEeccCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-CcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCC
Q 029591 90 RIIQKLGFP-AKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKV 168 (191)
Q Consensus 90 ~~l~~~g~~-~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks 168 (191)
++|+++|++ .++.+|+|+|||||++++++|||+.||..+ ++++||||+||||+||+.+|+++++||+||||+||||||
T Consensus 89 ~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~la~~~-~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks 167 (198)
T 1mp9_A 89 KTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLL-ENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKR 167 (198)
T ss_dssp HHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHHHHHHS-SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESS
T ss_pred HHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHHHHhhc-CCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCC
Confidence 999999998 588999999999999999999999999885 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 029591 169 RDETYTAFENIYPVLTEFRKV 189 (191)
Q Consensus 169 ~~~~~~a~~~i~~~L~~~r~~ 189 (191)
++++++|+++|+|+|.+++..
T Consensus 168 ~~~~~~A~~~i~~~L~~~~~~ 188 (198)
T 1mp9_A 168 EDEVHKAVKKIFDKLVELDCV 188 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999864
No 7
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=100.00 E-value=2.8e-33 Score=236.17 Aligned_cols=123 Identities=28% Similarity=0.322 Sum_probs=83.2
Q ss_pred eEEEEecCceEEEeccCCHHHHHHHHHHHHHHHHHcCCCCcccceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCC
Q 029591 60 TTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELF 139 (191)
Q Consensus 60 ~t~lIf~SGKivitGaks~e~a~~a~~~i~~~l~~~g~~~~~~~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~f 139 (191)
.--+=|+|||++++|+++.++++.++ +.+++++.++...+++|+|||||++++++|||+.||..+ ++++||||+|
T Consensus 25 ~~~~~f~sGk~~~s~~~s~~~~~~~~----~~~~~~~~~~~~~~~~I~NIVas~~l~~~ldL~~ia~~~-~n~eYePe~F 99 (240)
T 1rm1_A 25 VWENQNRDGTKPATTFQSEEDIKRAA----PESEKDTSATSGIVPTLQNIVATVTLGCRLDLKTVALHA-RNAEYNPKRF 99 (240)
T ss_dssp ----------------------------------------CCCCCEEEEEEEEEECCSCCCHHHHHHHB-TTEEECTTTC
T ss_pred cccccCCCCcceecccccHHHHHHHH----HHHHhhccCcCCCceEEEEEEEEEEcCCccCHHHHHhhC-CCcEEcCccc
Confidence 34556899999999999888877665 455677776666678999999999999999999999876 5999999999
Q ss_pred ceeEEEecCCeEEEEEeecceEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 140 PGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 140 pgli~r~~~~~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
|||+||+++|+++++||+||||+||||||+++++.|+++++++|.++.
T Consensus 100 pgli~Rl~~Pk~t~lIF~SGKiV~TGaks~e~a~~A~~~i~~~L~~lg 147 (240)
T 1rm1_A 100 AAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIG 147 (240)
T ss_dssp SEEEEEEETTEEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999998875
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=99.96 E-value=8.2e-29 Score=202.48 Aligned_cols=86 Identities=36% Similarity=0.596 Sum_probs=83.4
Q ss_pred CeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHHH
Q 029591 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARI 91 (191)
Q Consensus 12 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~~ 91 (191)
.+++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 102 ~~~~I~NIVas~~l~~~i~L~~la~~~~~~eYePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~ 181 (188)
T 2z8u_A 102 PEIKIQNMVATADLGIEPNLDDIALMVEGTEYEPEQFPGLVYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDT 181 (188)
T ss_dssp CCCEEEEEEEEEECSSCCCHHHHHHHSTTEEECTTTSSSEEEEEETTEEEEEECTTSEEEEESCSCHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEEecCCccCHHHHHhhCcCcEECCccCceEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC
Q 029591 92 IQKLGF 97 (191)
Q Consensus 92 l~~~g~ 97 (191)
|+++|+
T Consensus 182 L~~~~~ 187 (188)
T 2z8u_A 182 IKEVQE 187 (188)
T ss_dssp HHHHC-
T ss_pred HHHhcc
Confidence 999875
No 9
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=99.95 E-value=2e-28 Score=201.57 Aligned_cols=87 Identities=37% Similarity=0.567 Sum_probs=84.9
Q ss_pred CeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHHH
Q 029591 12 AVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARI 91 (191)
Q Consensus 12 ~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~~ 91 (191)
.+++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++.++
T Consensus 102 ~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fPgliyR~~~Pk~t~lIF~SGKiviTGaks~~~~~~A~~~i~~~ 181 (198)
T 1mp9_A 102 PKIQIQNIVASANLHVIVNLDKAAFLLENNMYEPEQFPGLIYRMDEPRVVLLIFSSGKMVITGAKREDEVHKAVKKIFDK 181 (198)
T ss_dssp CEEEEEEEEEEEECSSEECHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEeeCCCccCHHHHHhhcCCcEECCccCCeEEEEeCCCcEEEEEeCCCEEEEEecCCHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCC
Q 029591 92 IQKLGFP 98 (191)
Q Consensus 92 l~~~g~~ 98 (191)
|+++|+.
T Consensus 182 L~~~~~~ 188 (198)
T 1mp9_A 182 LVELDCV 188 (198)
T ss_dssp HHHTTCE
T ss_pred HHHhCCC
Confidence 9999874
No 10
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=99.95 E-value=2.6e-28 Score=198.63 Aligned_cols=85 Identities=40% Similarity=0.672 Sum_probs=82.0
Q ss_pred CCeeEEEEEEEEEEcCCccCHHHHHhhCCCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHH
Q 029591 11 GAVSSVKNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR 90 (191)
Q Consensus 11 ~~~~~I~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~ 90 (191)
..+++|+|||||++++++|||+.||..++|++||||+||||+||+++|+++++||+||||+||||||+++++.|++++++
T Consensus 97 ~~~~~I~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpgli~R~~~pk~~~lIF~SGKiviTGaks~~~~~~a~~~i~~ 176 (182)
T 1ais_A 97 APQIDVQNMVFSGDIGREFNLDVVALTLPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADAWEAVRKLLR 176 (182)
T ss_dssp SCEEEEEEEEEEEECSSCCCHHHHHHHSTTEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEEEcCCccCHHHHHhhCCCCEECCccCceEEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 029591 91 IIQKL 95 (191)
Q Consensus 91 ~l~~~ 95 (191)
+|+++
T Consensus 177 ~L~~~ 181 (182)
T 1ais_A 177 ELDKY 181 (182)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 99764
No 11
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=99.95 E-value=1.1e-27 Score=194.51 Aligned_cols=84 Identities=31% Similarity=0.507 Sum_probs=80.6
Q ss_pred ceeEEeEEEEEEcCCccChhHHHHhcCCccccccCCCceeEEEecCCeEEEEEeecceEEEeccCCHHHHHHHHHHHHHH
Q 029591 103 DFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 103 ~~~i~Nivat~~l~~~i~L~~la~~~~~~~~YePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~ 182 (191)
.++|+|||||++++++|||+.+|..+ ++++||||+||||+||+++|+++++||+||||+||||||+++++.|+++++++
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~-~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TGaks~e~~~~a~~~i~~~ 82 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHA-RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTGAKSEDDSKLASRKYARI 82 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHS-SSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhC-CCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999876 59999999999999999999999999999999999999999999999999999
Q ss_pred HHhhh
Q 029591 183 LTEFR 187 (191)
Q Consensus 183 L~~~r 187 (191)
|.++-
T Consensus 83 L~~lg 87 (180)
T 1ytb_A 83 IQKIG 87 (180)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 98874
No 12
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=99.93 E-value=2.3e-25 Score=185.31 Aligned_cols=84 Identities=30% Similarity=0.460 Sum_probs=80.9
Q ss_pred CeeEEEEEEEEEEcCCccCHHHHHhhC-CCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHH
Q 029591 12 AVSSVKNIVSTVNLDCKLDLKKIALQA-RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR 90 (191)
Q Consensus 12 ~~~~I~NvVas~~l~~~ldL~~la~~~-~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~ 90 (191)
.+++|+||||+++++++|||+.||... ++++||||+||||+||+.+|+++++||+||||+|||||+++|++.|++++..
T Consensus 131 ~~fkIqNIvas~dl~f~I~Le~la~~~~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p 210 (218)
T 3eik_A 131 DDFKIQNIVSSCDIKFSIRLEGLAYAHSNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYP 210 (218)
T ss_dssp EEEEEEEEEEEEECSSCBCHHHHHHHSTTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEEECCCcCcHHHHHHhccCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 479999999999999999999999876 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHc
Q 029591 91 IIQKL 95 (191)
Q Consensus 91 ~l~~~ 95 (191)
+|.++
T Consensus 211 ~L~~f 215 (218)
T 3eik_A 211 VLIQH 215 (218)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 13
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=92.63 E-value=0.12 Score=44.49 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=28.7
Q ss_pred CCCceEEEEecCCceEEEEecCceEEEeccCCH
Q 029591 46 KRFAAVIMRIREPKTTALIFASGKMVCTGAKSE 78 (191)
Q Consensus 46 e~fpglv~R~~~P~~t~lIf~SGKivitGaks~ 78 (191)
..-|+..++.+.+.+++.+|.|||++.+|...+
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~ 59 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAE 59 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchH
Confidence 334789999999999999999999999996544
No 14
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=92.30 E-value=0.04 Score=46.41 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=28.7
Q ss_pred CCCceEEEEecCCceEEEEecCceEEEeccCCHHH
Q 029591 46 KRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQ 80 (191)
Q Consensus 46 e~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~ 80 (191)
..-|+..++.+.+.+++.+|.|||++.+|...++.
T Consensus 26 ~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~ 60 (257)
T 3vn5_A 26 INAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKV 60 (257)
T ss_dssp CCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHH
T ss_pred cCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHH
Confidence 33467899999999999999999999999654433
No 15
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=90.48 E-value=3 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=24.3
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHhhhcccC
Q 029591 160 KIVITGAKVRDETYTAFENIYPVLTEFRKVQQ 191 (191)
Q Consensus 160 kivitGaks~~~~~~a~~~i~~~L~~~r~~~~ 191 (191)
.|.|+| +.+.+..|.+.|..++.+.+..+|
T Consensus 133 ~v~I~G--~~~~v~~A~~~I~~~i~~~~~~~~ 162 (163)
T 3krm_A 133 IVKIIG--HFYASQMAQRKIRDILAQVKQQHQ 162 (163)
T ss_dssp EEEEEE--CHHHHHHHHHHHHHHHHHHTC---
T ss_pred EEEEEe--CHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578999 678899999999999999987765
No 16
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus}
Probab=89.83 E-value=0.19 Score=42.33 Aligned_cols=40 Identities=10% Similarity=0.215 Sum_probs=33.6
Q ss_pred ccCCCceeEEEecCCeEEEEEeecceEEEeccCCHHHHHH
Q 029591 135 EPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYT 174 (191)
Q Consensus 135 ePe~fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~~~ 174 (191)
++..=|+..|+...+.+++.++.||||++.|...++++..
T Consensus 24 ~~~~~~~~~f~~k~~~~~it~Y~SGkv~fqG~~a~~~a~~ 63 (257)
T 3vn5_A 24 RKINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLKE 63 (257)
T ss_dssp EECCCTTCSEEEEETTEEEEECTTSEEEEESTTHHHHHHH
T ss_pred cccCCCceEEEEecCCeEEEEEeccEEEEeCCCHHHHHHH
Confidence 3455689999999999999999999999999977665544
No 17
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A
Probab=89.79 E-value=0.48 Score=40.68 Aligned_cols=37 Identities=27% Similarity=0.590 Sum_probs=32.0
Q ss_pred CCCceeEEEecCCeEEEEEeecceEEEeccCCHHHHH
Q 029591 137 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETY 173 (191)
Q Consensus 137 e~fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~~ 173 (191)
..=|+..|+...+.+++.++.||||++.|...++++.
T Consensus 27 ~~~~~~~f~~k~~~~~it~Y~SGkv~~qG~~a~~~~~ 63 (310)
T 2d0b_A 27 RLPAGALFAVKRPDVVITAYRSGKVLFQGKAAEQEAA 63 (310)
T ss_dssp SCCTTEEEEECCTTCEEEEETTSEEEEESTTHHHHHH
T ss_pred CCCCCeEEEecCCCeEEEEEeCCEEEEeCCchHHHHH
Confidence 4458999999999999999999999999988765443
No 18
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=81.39 E-value=1.2 Score=34.83 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=27.8
Q ss_pred EEEEEeecceEE-----------EeccCC-HHHHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV-----------ITGAKV-RDETYTAFENIYPVL 183 (191)
Q Consensus 151 ~t~lIF~sGkiv-----------itGaks-~~~~~~a~~~i~~~L 183 (191)
.|+++|.+|+.+ +.|+.. .+++.+.++.+++--
T Consensus 97 PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a 141 (160)
T 2av4_A 97 VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGA 141 (160)
T ss_dssp EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHh
Confidence 688999999997 789977 888999998887653
No 19
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=80.85 E-value=9.5 Score=28.46 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=54.4
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHHcC---CCCc----ccceeEEeEEEEEEcCC-----ccChhHHHHhcCCcccccc
Q 029591 69 KMVCTGAKSEQQSKLAARKYARIIQKLG---FPAK----FKDFKIQNIVGSCDVKF-----PIRLEGLAYSHGAFSSYEP 136 (191)
Q Consensus 69 KivitGaks~e~a~~a~~~i~~~l~~~g---~~~~----~~~~~i~Nivat~~l~~-----~i~L~~la~~~~~~~~YeP 136 (191)
.+.++|. .+++..|...+.+.+++-. .... .....+.-.+-.-..+. .-++..|....+-....++
T Consensus 49 ~v~I~G~--~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~ 126 (160)
T 2jzx_A 49 IITLAGP--TNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 126 (160)
T ss_dssp EEEEEEE--HHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC
Confidence 6888884 6788888888887776631 1100 00111111111100110 1123444444443444444
Q ss_pred CCCceeEEEecCCeEEEEEeecceEEEeccCCHHHHHHHHHHHHHHHHh
Q 029591 137 ELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTE 185 (191)
Q Consensus 137 e~fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~L~~ 185 (191)
+.+|+- ..+.|.|+| +.+.+..|.+.|..++.+
T Consensus 127 ~~~~~~--------------~~~~v~I~G--~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 127 DMLPNS--------------TERAITIAG--IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CCSTTC--------------CEEEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC--------------CceEEEEEc--CHHHHHHHHHHHHHHHhc
Confidence 444431 357899999 688999999999988875
No 20
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=72.93 E-value=3.7 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=23.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 45678899986 789999988888877654
No 21
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=70.88 E-value=7.2 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 35666888885 68999998888887764
No 22
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=69.76 E-value=8.5 Score=25.68 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=22.5
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++.+|..|+++ ..|..+.+++.+.++.++
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 35667888875 789999999988887654
No 23
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.32 E-value=5.9 Score=28.19 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=31.9
Q ss_pred CceeEEEecCCeEEEEEeecceEEEeccCCHHHHHHHHHHHHHHHHhhhcc
Q 029591 139 FPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKV 189 (191)
Q Consensus 139 fpgli~r~~~~~~t~lIF~sGkivitGaks~~~~~~a~~~i~~~L~~~r~~ 189 (191)
|+++...+.+ .++.|+|+|. .+++..|...|..++.+++..
T Consensus 56 ~~~v~I~fp~--------~~~~ItI~G~--~~~V~~a~~~I~~~v~el~~~ 96 (102)
T 2ctf_A 56 MPKVHIEFTE--------GEDKITLEGP--TEDVSVAQEQIEGMVKDLINR 96 (102)
T ss_dssp CSSSEEEECS--------SSCEEEEEEC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEeCC--------CCCEEEEECC--HHHHHHHHHHHHHHHHHHHhh
Confidence 4565544444 5789999999 678999999999999888754
No 24
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=69.30 E-value=5.7 Score=26.22 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=22.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ .+|..+.+++.+.++.+
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 45677889875 68999998888887754
No 25
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=68.95 E-value=6.4 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.5
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++++|.+|+++ ..|..+.+++.+.++.+.
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l 112 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTHL 112 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHHh
Confidence 45666889886 679999998888887654
No 26
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=68.81 E-value=7.8 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=21.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ .+|..+.+++.+.++.+
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 34566889886 78999999888888765
No 27
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=68.29 E-value=7.2 Score=25.94 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=22.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 45677889885 68999998888888765
No 28
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=67.41 E-value=8.4 Score=25.07 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 102 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLL 102 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHHh
Confidence 45677889884 679999988888887654
No 29
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=66.96 E-value=9.2 Score=26.38 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=21.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 45677889885 67998998888887765
No 30
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=66.29 E-value=7.4 Score=25.75 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=21.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++++|.+|+++ ..|..+.+++.+.++.+
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHH
Confidence 34666888876 67999999888888765
No 31
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=66.19 E-value=7.7 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
++.+|.+|+++ ..|..+.+++.+.++.
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 45666889887 6799999888877764
No 32
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=64.74 E-value=11 Score=25.24 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=21.3
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+++|.+|+++ ..|. +.+++.+.++.++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHHh
Confidence 46778889884 6788 8888888777654
No 33
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=64.43 E-value=5.4 Score=26.41 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred EEEEEeCCcEeeeEeCCCCHHHHHHHHHHHh
Confidence 45666888876 789999888888777543
No 34
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=63.84 E-value=12 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=26.4
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 184 (191)
|+++|.+|+++ ..|..+.+++.+.++.+++.-.
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~ 115 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGE 115 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcccc
Confidence 46777889884 7899999999999988876533
No 35
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=63.75 E-value=14 Score=27.07 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEEeecceEE-----------Eec-cCCHHHHHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIV-----------ITG-AKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 153 ~lIF~sGkiv-----------itG-aks~~~~~~a~~~i~~~L~ 184 (191)
+++|..|+++ +.| ..+.+++.+.++.++....
T Consensus 81 ~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~ 124 (149)
T 3gix_A 81 TVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAM 124 (149)
T ss_dssp EEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhh
Confidence 3488889888 899 8999999999998876653
No 36
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=63.39 E-value=11 Score=26.66 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=22.4
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+.+|.+|+++ ..|..+.+++.+.++.++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l 137 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPYL 137 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHHH
Confidence 45677889886 789999888888777543
No 37
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=63.08 E-value=8.1 Score=28.50 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
|+++|.+|+++ +.|+.+.+++.+.++.++.
T Consensus 94 T~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~ 125 (142)
T 2es7_A 94 ATLVFTDGKLRGALSGIHPWAELLTLMRSIVD 125 (142)
T ss_dssp EEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred eEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 35677889876 7899999888888876653
No 38
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=61.95 E-value=9.5 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=20.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ .+|. +.+++.+.++.+
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 46677889886 7798 888888877754
No 39
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=60.46 E-value=13 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=24.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+++|.+|+++ +.|+.+.+++.+.++.++
T Consensus 94 TlilFk~G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 94 ATLVFTGGNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEecCCCHHHHHHHHHHHh
Confidence 78999999994 779999998888887654
No 40
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=60.05 E-value=13 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=23.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
++++|.+|+++ ..|..+.+++.+.++.++.
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~ 143 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLS 143 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHhc
Confidence 46777899887 7899999988888876543
No 41
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=59.86 E-value=14 Score=27.26 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+.+|.+|+++ ..|..+.+++.+.++..+
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 151 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGKL 151 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHHh
Confidence 46777899987 889999888888777543
No 42
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=59.69 E-value=17 Score=24.89 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCC
Q 029591 75 AKSEQQSKLAARKYARIIQKLGFP 98 (191)
Q Consensus 75 aks~e~a~~a~~~i~~~l~~~g~~ 98 (191)
|.+.|+|++-++-+++.|+++|++
T Consensus 56 aendeqakelleliarllqklgyk 79 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK 79 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC
Confidence 578899999999999999999985
No 43
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=59.56 E-value=15 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=22.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 182 (191)
++.+|.+|+++ ..|. +.+++.+.++.+++.
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 46677899986 6788 788888888876653
No 44
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=59.43 E-value=16 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=20.5
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+++|.+|+++ .+| .+.+++.+.++.++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~l 122 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDII 122 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHHh
Confidence 46777889885 678 57788888777654
No 45
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=59.39 E-value=12 Score=25.32 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.3
Q ss_pred eEEEEEeecce--------EEEeccCCHHHHHHHHHHHHHHHH
Q 029591 150 KIVLLIFVSGK--------IVITGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 150 ~~t~lIF~sGk--------ivitGaks~~~~~~a~~~i~~~L~ 184 (191)
.+++.|-.+|. |.|+| +++.+..|.+.|..++.
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 46677777887 99999 88899999999888764
No 46
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=59.28 E-value=9.2 Score=26.56 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.6
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+.+|.+|+++ ..|. +.+++.+.++.+
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 46777889885 6888 888888877754
No 47
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=58.21 E-value=14 Score=25.11 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.5
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
++.+|.+|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELVNK 102 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHH
Confidence 45666899987 7899998887766553
No 48
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=57.92 E-value=14 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=17.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFE 177 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~ 177 (191)
|+++|.+|+.+ ++|+ +.+++.+.++
T Consensus 76 T~~~~~~G~~v~~~~G~-~~~~l~~~i~ 102 (105)
T 3zzx_A 76 TFLFMKNGQKLDSLSGA-NYDKLLELVE 102 (105)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCc-CHHHHHHHHH
Confidence 56788899885 6785 6766666554
No 49
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=57.92 E-value=7.6 Score=26.39 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++++|.+|+++ .+|. +.+++.+.++.+
T Consensus 82 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 110 (112)
T 1syr_A 82 TFKVYKNGSSVDTLLGA-NDSALKQLIEKY 110 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHTT
T ss_pred EEEEEECCcEEEEEeCC-CHHHHHHHHHHh
Confidence 35677888874 7798 888888777643
No 50
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=57.84 E-value=13 Score=25.76 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.4
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhhhc
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~r~ 188 (191)
+|.|.|+|. .+.+..|.+.|..++.+..+
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcccc
Confidence 689999997 78999999999999887654
No 51
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=57.35 E-value=11 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=21.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++++|.+|+++ ..|. +.+++.+.++.+
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 46777889886 6788 888888887754
No 52
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=56.28 E-value=14 Score=25.18 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+++|.+|+++ .+|.. .+++.+.++.+.
T Consensus 90 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 90 TFLFMKEGDVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCcC-HHHHHHHHHHHh
Confidence 46778899985 78988 888888777654
No 53
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=56.27 E-value=8.9 Score=25.69 Aligned_cols=28 Identities=14% Similarity=0.263 Sum_probs=22.3
Q ss_pred EEEEeecceEEE--eccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIVI--TGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkivi--tGaks~~~~~~a~~~i 179 (191)
|+++|.+|+++- .|..+.+++.+.++.+
T Consensus 74 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 74 TVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 567889999874 7999999888877654
No 54
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=56.04 E-value=15 Score=24.75 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=26.2
Q ss_pred ceEEEEecCce--------EEEeccCCHHHHHHHHHHHHHHHH
Q 029591 59 KTTALIFASGK--------MVCTGAKSEQQSKLAARKYARIIQ 93 (191)
Q Consensus 59 ~~t~lIf~SGK--------ivitGaks~e~a~~a~~~i~~~l~ 93 (191)
.+.+.|-.+|. +.++| +.+++..|.+.+..+++
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G--~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG--DPYKVQQACEMVMDILR 84 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE--CHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHhc
Confidence 46788888888 99999 78888888877766653
No 55
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=55.59 E-value=19 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.2
Q ss_pred cCceEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 66 ASGKMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 66 ~SGKivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.++.|.++|. .+++..|..++..+++++
T Consensus 66 ~~~~ItI~G~--~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 66 GEDKITLEGP--TEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp SSCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHHHHHH
Confidence 5789999995 688888888888887765
No 56
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=55.58 E-value=20 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=23.1
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i~ 89 (191)
++.+|.+|+.+ ..|..+.++....+++..
T Consensus 79 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l 109 (111)
T 3gnj_A 79 QILYFKDGEYKGKMAGDVEDDEVEQMIADVL 109 (111)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeccCCHHHHHHHHHHHh
Confidence 77788999986 679989888888776653
No 57
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=55.28 E-value=6.8 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=20.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
++.+|.+|+++ ..|..+.+++.+.++.
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 74 TLILFKGGRPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTTT
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHH
Confidence 35566888875 6899998888776654
No 58
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=54.72 E-value=7 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 153 LLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 153 ~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
+.+|.+|+++ ..|..+.+++.+.++.
T Consensus 93 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 93 LLLFKNGEVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp EEEEESSSEEEEEESCCCHHHHHHHHTT
T ss_pred EEEEECCEEEEEEeCCCCHHHHHHHHHH
Confidence 4556889886 8899998888777654
No 59
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=54.46 E-value=19 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=21.9
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 76 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 76 TIMVFKGGKKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp EEEEESSSSEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 67788999986 57988888877776654
No 60
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=54.44 E-value=16 Score=24.42 Aligned_cols=28 Identities=18% Similarity=0.327 Sum_probs=22.2
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 80 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 109 (112)
T 1t00_A 80 TLNVYQGGEVAKTIVGAKPKAAIVRDLEDF 109 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 67788999987 67999888877766554
No 61
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=54.26 E-value=19 Score=26.93 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=25.3
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
-|+++|.+|+++ +.|+.+.+++.+.++.++
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 378999999996 679999999988888665
No 62
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=53.90 E-value=15 Score=24.14 Aligned_cols=28 Identities=39% Similarity=0.634 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 78 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 78 TTLIFVNGQLVDSLVGAVDEDTLESTVNKY 107 (109)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEeeeccCCHHHHHHHHHHH
Confidence 67778999987 57888888888777655
No 63
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=53.84 E-value=24 Score=25.12 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=25.8
Q ss_pred CeEEEEEeecceEEE--eccCCHHHHHHHHHHHHHHHHhhh
Q 029591 149 PKIVLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 149 ~~~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~~~r 187 (191)
...+++|..+|+|+- .|..+.+++.+.++.+ |.+||
T Consensus 127 ~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l---l~~~~ 164 (164)
T 2ggt_A 127 TIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH---MRPYR 164 (164)
T ss_dssp CCEEEEECTTSCEEEEEETTCCHHHHHHHHHHH---HGGGC
T ss_pred cceEEEECCCCeEEEEeCCCCCHHHHHHHHHHH---HHhcC
Confidence 347889999999974 5777888787777654 45554
No 64
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=53.64 E-value=2.9 Score=28.66 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++++|.+|+++ ..|..+.+++.+.++.+
T Consensus 87 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 116 (121)
T 2i1u_A 87 TLILFKDGQPVKRIVGAKGKAALLRELSDV 116 (121)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHTCSC
T ss_pred EEEEEECCEEEEEecCCCCHHHHHHHHHHH
Confidence 45677888886 67999988887766543
No 65
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=53.44 E-value=18 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred eEEEEEeecc-----eEEEeccCCHHHHHHHHHHHHHHHHhhhcc
Q 029591 150 KIVLLIFVSG-----KIVITGAKVRDETYTAFENIYPVLTEFRKV 189 (191)
Q Consensus 150 ~~t~lIF~sG-----kivitGaks~~~~~~a~~~i~~~L~~~r~~ 189 (191)
.+++-|...| .|.|+|. .+.+..|.+.|..++.++...
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~~~~ 89 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEYLAD 89 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777 8999998 478999999999998887653
No 66
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=53.34 E-value=22 Score=23.47 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=21.6
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....+++.
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 77 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 106 (108)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEecCCCHHHHHHHHHHh
Confidence 67777999986 67888888877766554
No 67
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=53.25 E-value=20 Score=24.57 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+++|.+|+++ ..|.. .+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~~-~~~l~~~i~~~ 122 (124)
T 1faa_A 94 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 122 (124)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 46788899986 67876 77777776653
No 68
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=53.00 E-value=11 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFE 177 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~ 177 (191)
++.+|.+|+++ ..|.. .+++.+.++
T Consensus 86 t~~~~~~G~~~~~~~G~~-~~~l~~~l~ 112 (114)
T 2oe3_A 86 TFVLGKDGQLIGKIIGAN-PTALEKGIK 112 (114)
T ss_dssp EEEEEETTEEEEEEESSC-HHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeCCC-HHHHHHHHH
Confidence 45678899987 78988 777777665
No 69
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=52.50 E-value=20 Score=23.99 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+++|.+|+++ ..|.. .+++.+.++.+
T Consensus 81 t~~~~~~G~~~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 81 TFKILKENSVVGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp EEEEESSSSEEEEEESSC-HHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCC-HHHHHHHHHHh
Confidence 46788899985 67875 77777776654
No 70
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=51.27 E-value=22 Score=24.96 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=22.2
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ .+|..+.++....++++
T Consensus 97 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 97 TLLLFKNGEVAATKVGALSKGQLKEFLDAN 126 (128)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEcCCCCHHHHHHHHHHh
Confidence 67777999987 68988888887776654
No 71
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=51.25 E-value=25 Score=25.34 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=29.0
Q ss_pred EEEEEeecceEEEe--ccCCHHHHHHHHHHHHHHHHhhhc
Q 029591 151 IVLLIFVSGKIVIT--GAKVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 151 ~t~lIF~sGkivit--Gaks~~~~~~a~~~i~~~L~~~r~ 188 (191)
.+++| .+|+|+-. |.....++...++.|...|.+++.
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l~~ 158 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKFKE 158 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHhhc
Confidence 67899 99999854 555667788888888888887753
No 72
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.03 E-value=22 Score=24.48 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=20.6
Q ss_pred EEEEe-ecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF-~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+| .+|+++ .+|..+.+++.+.++..
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 45666 689886 66999988887777654
No 73
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=51.03 E-value=23 Score=23.05 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=21.8
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ .+|..+.++....++++
T Consensus 75 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 75 TVLFFKNGERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEecCCCHHHHHHHHHhh
Confidence 67788999986 57988888887766553
No 74
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=50.45 E-value=25 Score=23.28 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=21.7
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 82 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 82 ALRLVKGEQILDSTEGVISKDKLLSFLDTH 111 (115)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEcCCEEEEEecCCCCHHHHHHHHHHH
Confidence 67777999987 57888888887766654
No 75
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=50.37 E-value=19 Score=25.40 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.4
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPVL 183 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L 183 (191)
.+++|..+|+++ ..|..+.+++.+.++.++..+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467788999996 678889999998888776554
No 76
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=50.26 E-value=29 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEeecceEE--EeccCCHHHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIV--ITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 153 ~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 182 (191)
+.+|.+|+++ ..|.. .+++.+.++.+++-
T Consensus 80 ~~~~~~G~~~~~~~G~~-~~~l~~~l~~~~~~ 110 (112)
T 3d6i_A 80 FIIIHKGTILKELSGAD-PKEYVSLLEDCKNS 110 (112)
T ss_dssp EEEEETTEEEEEECSCC-HHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEEecCCC-HHHHHHHHHHHHhh
Confidence 4567888875 56774 45687777766543
No 77
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=49.36 E-value=20 Score=23.43 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=20.5
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARK 87 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~ 87 (191)
++.+|.+|+++ ..|..+.++....+++
T Consensus 77 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 77 TLMLVRDGKVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEecCCCCHHHHHHHHHh
Confidence 67777999987 6788888877766543
No 78
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=49.31 E-value=20 Score=24.28 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=19.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+++|.+|+++ ..| .+.+++.+.++.+
T Consensus 88 t~~~~~~G~~~~~~~G-~~~~~l~~~l~~~ 116 (117)
T 2xc2_A 88 TFIAIKNGEKVGDVVG-ASIAKVEDMIKKF 116 (117)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred eEEEEeCCcEEEEEeC-CCHHHHHHHHHHh
Confidence 46777889885 668 4777777777653
No 79
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=49.22 E-value=7.3 Score=27.67 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.8
Q ss_pred EEEEe-ecceEE----EeccCCHHHHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIV----ITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 152 t~lIF-~sGkiv----itGaks~~~~~~a~~~i~~~ 182 (191)
++.+| .+|+++ ..|..+.+++.+.++.+-|.
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~~ 129 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQPH 129 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC---
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhcCcc
Confidence 46677 899996 89999999999888876553
No 80
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=49.16 E-value=14 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..|..+.+++.+.++..
T Consensus 75 t~~~~~~G~~v~~~~G~~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 75 TLVFIRDGKVAKVFSGIMNPRELQALYASI 104 (110)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHHTC
T ss_pred EEEEEECCEEEEEEcCCCCHHHHHHHHHHH
Confidence 34566888874 56999999888877654
No 81
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=49.11 E-value=24 Score=26.20 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=25.7
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHHcCCCC
Q 029591 69 KMVCTGAKSEQQSKLAARKYARIIQKLGFPA 99 (191)
Q Consensus 69 KivitGaks~e~a~~a~~~i~~~l~~~g~~~ 99 (191)
=|+||| .|..+++..++.+.+.+++.|..+
T Consensus 37 fVIatg-~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 37 FLICHG-NSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp EEEEEE-SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEc-CCHHHHHHHHHHHHHHHHHcCCcc
Confidence 477887 788999999999999999988754
No 82
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=49.01 E-value=22 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=18.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..| .+.+++.+.++.+
T Consensus 75 t~~~~~~g~~~~~~~G-~~~~~l~~~l~~~ 103 (104)
T 2vim_A 75 TFVFIKDGKEVDRFSG-ANETKLRETITRH 103 (104)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeC-CCHHHHHHHHHhh
Confidence 35677788875 568 4777777777654
No 83
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=48.80 E-value=21 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=20.2
Q ss_pred eEEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 60 ~t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
-|+.+|++|+++ ..|+.+.++....+++.
T Consensus 93 PT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~ 123 (142)
T 2es7_A 93 PATLVFTDGKLRGALSGIHPWAELLTLMRSI 123 (142)
T ss_dssp SEEEEESCC----CEESCCCHHHHHHHHHHH
T ss_pred CeEEEEeCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 388889999986 67998888777766554
No 84
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=48.57 E-value=13 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=22.6
Q ss_pred eEEEEecCceEEE--eccCCHHHHHHHHHHH
Q 029591 60 TTALIFASGKMVC--TGAKSEQQSKLAARKY 88 (191)
Q Consensus 60 ~t~lIf~SGKivi--tGaks~e~a~~a~~~i 88 (191)
.|+.+|.+|+++- .|..+.++....++++
T Consensus 73 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 73 PTVLLFYNGKEILRESRFISLENLERTIQLF 103 (105)
T ss_dssp CEEEEEETTEEEEEEESSCCHHHHHHHHHTT
T ss_pred CEEEEEeCCeEEEEEeCCcCHHHHHHHHHHh
Confidence 3788889999875 7988888887766543
No 85
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=47.55 E-value=27 Score=24.29 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+++|.+|+++ ..|. +.+++.+.++.+
T Consensus 94 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 94 TFMFLKEGKILDKVVGA-KKDELQSTIAKH 122 (124)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHh
Confidence 46777899985 6785 777887777654
No 86
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=47.51 E-value=29 Score=23.72 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=21.4
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKL 117 (119)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 67777999986 67888888877766554
No 87
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=47.33 E-value=26 Score=26.17 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=25.5
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHHcCCCC
Q 029591 69 KMVCTGAKSEQQSKLAARKYARIIQKLGFPA 99 (191)
Q Consensus 69 KivitGaks~e~a~~a~~~i~~~l~~~g~~~ 99 (191)
=|+||| .|..+++..++.+.+.+++.|..+
T Consensus 37 fVIaTg-~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 37 MIVATG-DSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp EEEEEC-SSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEEc-CCHHHHHHHHHHHHHHHHHcCCcC
Confidence 377887 788999999999999999988753
No 88
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=46.87 E-value=32 Score=22.03 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNL 101 (104)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEECCeEhhhccCCCCHHHHHHHHHHH
Confidence 67777999985 57888888877776654
No 89
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=46.35 E-value=28 Score=23.86 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=21.0
Q ss_pred EEEEee-cceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFV-SGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~-sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|. +|+++ ..|..+.+++.+.++..
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 115 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNSL 115 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHHH
Confidence 456666 88885 67999998888877654
No 90
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=45.96 E-value=25 Score=24.75 Aligned_cols=33 Identities=12% Similarity=0.079 Sum_probs=25.5
Q ss_pred eEEEEecCceEE--EeccCCHHHHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV--CTGAKSEQQSKLAARKYARII 92 (191)
Q Consensus 60 ~t~lIf~SGKiv--itGaks~e~a~~a~~~i~~~l 92 (191)
+++.+..+|+++ ..|..+.++....++++++.+
T Consensus 120 ~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l~~~ 154 (156)
T 1kng_A 120 ETFVVGREGTIVYKLVGPITPDNLRSVLLPQMEKA 154 (156)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTHHHHHHHH
T ss_pred eEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 467777999996 578888888888887775544
No 91
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=45.67 E-value=17 Score=23.80 Aligned_cols=27 Identities=19% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
++++|.+|+++ ..|..+.+++.+.++.
T Consensus 76 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 76 TLIVFKDGQPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHT
T ss_pred EEEEEeCCeEEEEEeCCCCHHHHHHHHHH
Confidence 35667788874 5789998888887764
No 92
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=45.45 E-value=27 Score=24.60 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=22.1
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....++++
T Consensus 107 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 136 (140)
T 1v98_A 107 TLVLFRRGAPVATWVGASPRRVLEERLRPY 136 (140)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEeCCCCHHHHHHHHHHH
Confidence 77888999987 68988888777766554
No 93
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.43 E-value=32 Score=23.50 Aligned_cols=30 Identities=17% Similarity=0.402 Sum_probs=21.9
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
++.+|..|+++ ..|..+.+++.+.++.+++
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~ 117 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS 117 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence 35667777755 6788899888888776654
No 94
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=45.34 E-value=26 Score=25.29 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=27.5
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~L~ 184 (191)
.+++|..+|+|+ ..|..+.+++.+.++.+++.+.
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 578899999997 5688899999888887776554
No 95
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=45.19 E-value=30 Score=24.60 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=23.2
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i~ 89 (191)
++.+|.+|+++ ..|..+.++....+++..
T Consensus 112 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 142 (148)
T 3p2a_A 112 TIMLYRNGKMIDMLNGAVPKAPFDNWLDEQL 142 (148)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCCHHHHHHHHHHHh
Confidence 78888999987 678888888888776653
No 96
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=44.83 E-value=29 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=19.3
Q ss_pred EEEeecceE--EEeccCCHHHHHHHHHH
Q 029591 153 LLIFVSGKI--VITGAKVRDETYTAFEN 178 (191)
Q Consensus 153 ~lIF~sGki--vitGaks~~~~~~a~~~ 178 (191)
+++|.+|++ ...|..+.+++.+.++.
T Consensus 82 ~~~~~~g~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 82 LLLFRGGKKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp EEEEETTEEEEEECSCCSHHHHHHHHHH
T ss_pred EEEEeCCcEEEeccCCcCHHHHHHHHHh
Confidence 566678877 46788888888877653
No 97
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=44.81 E-value=37 Score=24.62 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=27.6
Q ss_pred EEEEecCceEE-----------Eec-cCCHHHHHHHHHHHHHHHHH
Q 029591 61 TALIFASGKMV-----------CTG-AKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 61 t~lIf~SGKiv-----------itG-aks~e~a~~a~~~i~~~l~~ 94 (191)
|+.+|.+|+++ ..| ..+.++....++.+.+-.++
T Consensus 80 t~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~~~~~ 125 (149)
T 3gix_A 80 STVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMR 125 (149)
T ss_dssp EEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHHHhhc
Confidence 55599999998 789 88999999988888766543
No 98
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=44.55 E-value=32 Score=22.72 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
++.+|.+|+++ ..| .+.+++.+.++.+++
T Consensus 82 t~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~~ 112 (113)
T 1ti3_A 82 TFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112 (113)
T ss_dssp EEEEEETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred EEEEEeCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence 45677889884 577 467788888876653
No 99
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=44.41 E-value=29 Score=26.41 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=24.1
Q ss_pred EEEEeecceE--EEeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKI--VITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGki--vitGaks~~~~~~a~~~i~ 180 (191)
++.||.+|+. .+.|+.+.+++.++++.+.
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~ 209 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWL 209 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence 4567789997 7899999999999988665
No 100
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=43.90 E-value=27 Score=24.67 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=23.2
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
|+++|.+|+++ ++|..+.+...+.++.+..
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~ 126 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREIYG 126 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence 57788899875 6899999888877776543
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=43.77 E-value=19 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.475 Sum_probs=24.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
|+++|..|+++ .+|..+.+.+.+.++...|
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp 114 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDXVLP 114 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence 46777899987 7899999888888776553
No 102
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=43.69 E-value=48 Score=23.36 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=27.2
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i~~~l~~ 94 (191)
++.+|.+|+++ ..|..+.++....+++++..-.+
T Consensus 81 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~ 116 (140)
T 3hz4_A 81 TFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEE 116 (140)
T ss_dssp EEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhccccc
Confidence 78888999985 67999999999888887655443
No 103
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=42.65 E-value=36 Score=22.12 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+.+ ..|. +.++....++++
T Consensus 76 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 76 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCC-CHHHHHHHHHHh
Confidence 77888999986 6787 887777766543
No 104
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=42.07 E-value=21 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=22.9
Q ss_pred ceEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 159 GKIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 159 GkivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
+.|+|+| +.+.++.|.+.|..++.+-+
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhccc
Confidence 6889999 78899999999998877654
No 105
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=42.02 E-value=36 Score=25.53 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=23.6
Q ss_pred eEEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 60 ~t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
-|+.+|++|+.+ ..|+.+.++....++++
T Consensus 93 PTlilFk~G~~v~~~~G~~~k~~l~~~i~~~ 123 (140)
T 2qgv_A 93 PATLVFTGGNYRGVLNGIHPWAELINLMRGL 123 (140)
T ss_dssp SEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEecCCCHHHHHHHHHHH
Confidence 399999999996 46999988887776655
No 106
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=41.84 E-value=27 Score=23.65 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=22.2
Q ss_pred EEEEe-ecceEE-EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIV-ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF-~sGkiv-itGaks~~~~~~a~~~i~ 180 (191)
++.++ .+|+++ ..|..+.+++.+.++.++
T Consensus 104 ~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 104 AYAFVDPHGNVDVVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp EEEEECTTCCEEEEESCCCHHHHHHHHHHHC
T ss_pred eEEEECCCCCEEEEecCCCHHHHHHHHHHHh
Confidence 34555 699996 889889988888887654
No 107
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=41.66 E-value=33 Score=22.25 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=18.1
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~ 178 (191)
++.+|.+|+++ .+| .+.+++.+.++.
T Consensus 77 t~~~~~~G~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 77 TFVFLKNGVKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp EEEEEETTEEEEEEES-CCHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEEcC-CCHHHHHHHHHH
Confidence 46777888874 567 577777776654
No 108
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=41.29 E-value=43 Score=21.76 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=24.5
Q ss_pred EEEEEeecc----eEEEeccCCHHHHHHHHHHHHHHHHh
Q 029591 151 IVLLIFVSG----KIVITGAKVRDETYTAFENIYPVLTE 185 (191)
Q Consensus 151 ~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~L~~ 185 (191)
+++-|-..| -|.|+|. ++.+..|.+.|...|.+
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 344444444 5888987 78899999999988764
No 109
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=41.25 E-value=37 Score=24.77 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=22.0
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|..+.++....+++.
T Consensus 121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 121 AFILFHKGRELARAAGARPASELVGFVRGK 150 (155)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCCCCHHHHHHHHHHH
Confidence 77788999997 78988888777766554
No 110
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=40.99 E-value=38 Score=23.06 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=20.8
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|. +.++....++++
T Consensus 87 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 87 TFQFFKKGQKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EEEEESSSSEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEcCC-CHHHHHHHHHHh
Confidence 68888999987 5687 888877766553
No 111
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=40.99 E-value=45 Score=22.11 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=19.3
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 84 t~~~~~~g~~~~~~~g~-~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 84 TFLFIKDGEKVDSVVGG-RKDDIHTKIVALM 113 (118)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEecCC-CHHHHHHHHHHHh
Confidence 45667788875 6774 6777777776654
No 112
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=40.95 E-value=29 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAA 85 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~ 85 (191)
++.+|.+|+++ ..|..+.++....+
T Consensus 74 t~~~~~~G~~~~~~~G~~~~~~l~~~l 100 (112)
T 2voc_A 74 TLLVLKDGEVVETSVGFKPKEALQELV 100 (112)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHH
T ss_pred EEEEEeCCEEEEEEeCCCCHHHHHHHH
Confidence 66777999987 77988877665543
No 113
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=40.88 E-value=23 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=21.4
Q ss_pred EEEEe-ecceEE-Ee---ccCCHHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIV-IT---GAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF-~sGkiv-it---Gaks~~~~~~a~~~i~ 180 (191)
++.++ .+|+++ .. |..+.+++.+.++.++
T Consensus 102 ~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 102 AFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp EEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred EEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence 34555 799997 67 8889988888887653
No 114
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.24 E-value=46 Score=24.82 Aligned_cols=30 Identities=0% Similarity=-0.092 Sum_probs=25.2
Q ss_pred eEEEEecCceEEE--eccCCHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMVC--TGAKSEQQSKLAARKYA 89 (191)
Q Consensus 60 ~t~lIf~SGKivi--tGaks~e~a~~a~~~i~ 89 (191)
-|+.+|++|+.+- .|+.+.++....++++.
T Consensus 91 PTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 91 PSLAVVQPERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp SEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 4999999999975 59999988888777665
No 115
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=40.21 E-value=21 Score=24.27 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=18.1
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAF 176 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~ 176 (191)
|+++|.+|+++ +.|..+.+++.+.+
T Consensus 90 t~~~~~~G~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 90 GFVHITDGQINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp EEEEEETTEEEEECCTTCCHHHHHHHH
T ss_pred eEEEEECCEEEEEecCCCCHHHHHHHh
Confidence 45667788875 57888888777654
No 116
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=40.15 E-value=32 Score=21.42 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.3
Q ss_pred cceEEEeccCCHHHHHHHHHHH
Q 029591 158 SGKIVITGAKVRDETYTAFENI 179 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i 179 (191)
+|++...|..+.+++.+.++..
T Consensus 62 ~G~~~~~G~~~~~~l~~~l~~~ 83 (85)
T 1nho_A 62 NGVVRFVGAPSREELFEAINDE 83 (85)
T ss_dssp TTTEEEECSSCCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHH
Confidence 8888889998999988887754
No 117
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=40.09 E-value=43 Score=22.04 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=20.2
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|. +.++....++++
T Consensus 81 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 109 (112)
T 1ep7_A 81 TFHVYKDGVKADDLVGA-SQDKLKALVAKH 109 (112)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEEEEcCC-CHHHHHHHHHHH
Confidence 67788999985 5787 777777666554
No 118
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=39.80 E-value=43 Score=25.88 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=28.3
Q ss_pred eEEEEecCceEE-----------EeccCC-HHHHHHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV-----------CTGAKS-EQQSKLAARKYARIIQK 94 (191)
Q Consensus 60 ~t~lIf~SGKiv-----------itGaks-~e~a~~a~~~i~~~l~~ 94 (191)
.|+.+|.+|+.+ +.|+.+ .++....++++++--++
T Consensus 97 PT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~ 143 (160)
T 2av4_A 97 VSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARK 143 (160)
T ss_dssp EEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhc
Confidence 589999999997 779877 88888888887766544
No 119
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=39.50 E-value=22 Score=24.45 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=26.2
Q ss_pred eEEEEEeecce--------EEEeccCCHHHHHHHHHHHHHHHHhh
Q 029591 150 KIVLLIFVSGK--------IVITGAKVRDETYTAFENIYPVLTEF 186 (191)
Q Consensus 150 ~~t~lIF~sGk--------ivitGaks~~~~~~a~~~i~~~L~~~ 186 (191)
.+++.|-..|. |.|+| +++.+..|.+.|..++.+.
T Consensus 45 ga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 45 GVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp TSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCC
T ss_pred CCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhcc
Confidence 35555555555 89999 6678999999999887653
No 120
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=39.09 E-value=20 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=18.3
Q ss_pred cceEEEeccCCHHHHHHHHHHH
Q 029591 158 SGKIVITGAKVRDETYTAFENI 179 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i 179 (191)
+|++...|..+.+++.+.++..
T Consensus 63 ~G~~~~~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 63 NGDVEFIGAPTKEALVEAIKKR 84 (85)
T ss_dssp TTEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEeeecCCCHHHHHHHHHHh
Confidence 8888889998999988887753
No 121
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=38.92 E-value=43 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.2
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHH
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~ 184 (191)
.+.|.|+|. ++.+..|.+.|...+.
T Consensus 49 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 49 DRQVTITGS--AASISLAQYLINVRLS 73 (76)
T ss_dssp EEEEEEEEC--HHHHHHHHHHHHHHHT
T ss_pred eEEEEEEeC--HHHHHHHHHHHHHHHH
Confidence 678999996 7889999999888765
No 122
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=38.86 E-value=43 Score=24.03 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=27.0
Q ss_pred eEEEEecCceEE--EeccCCHHHHHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV--CTGAKSEQQSKLAARKYARIIQ 93 (191)
Q Consensus 60 ~t~lIf~SGKiv--itGaks~e~a~~a~~~i~~~l~ 93 (191)
++++|..+|+++ ..|..+.++....++++.+.++
T Consensus 128 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 163 (168)
T 2b1k_A 128 ETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWEKYS 163 (168)
T ss_dssp EEEEECTTSBEEEEEESCCCHHHHHHTTHHHHHHHH
T ss_pred EEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 578888999997 5688888888888887766654
No 123
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.39 E-value=47 Score=22.93 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=27.5
Q ss_pred ceEEEEecCc-----eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASG-----KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SG-----KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.+..+| .+.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 47 KVDIRFPQSGAPDPNCVTVTGL--PENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TCEEECCCTTCSCTTEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEecCCCCCCCcEEEEEcC--HHHHHHHHHHHHHHHHHH
Confidence 4677788888 8999995 578888888887777664
No 124
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=38.31 E-value=31 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEe-ecceEE-EeccCCHHHHHHHHHHHH
Q 029591 153 LLIF-VSGKIV-ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 153 ~lIF-~sGkiv-itGaks~~~~~~a~~~i~ 180 (191)
+.+| .+|+++ ..|..+.+++.+.++...
T Consensus 96 ~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 96 ILFIPMEGKPEMAQGAMPKASFKKAIDEFL 125 (136)
T ss_dssp EEEECSSSCCEEEESCCCHHHHHHHHHHHH
T ss_pred EEEECCCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 4555 677753 578899998888887654
No 125
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=38.29 E-value=63 Score=23.22 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=25.5
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~~ 182 (191)
-|+++|.+|+.+ ++|+.+.++....++.++..
T Consensus 78 PT~i~f~~G~ev~Ri~G~~~~~~f~~~L~~~l~~ 111 (116)
T 3dml_A 78 PTFVLMAGDVESGRLEGYPGEDFFWPMLARLIGQ 111 (116)
T ss_dssp SEEEEEETTEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCEEEeeecCCCCHHHHHHHHHHHHhh
Confidence 367888888875 78999999998888876543
No 126
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=38.18 E-value=38 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=16.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
|+.+|.+|+++ ..|... +++.+.++..
T Consensus 77 t~~~~~~G~~~~~~~G~~~-~~l~~~l~~~ 105 (107)
T 1gh2_A 77 TFQFFRNKVRIDQYQGADA-VGLEEKIKQH 105 (107)
T ss_dssp EEEEEETTEEEEEEESSCH-HHHHHHHHHH
T ss_pred EEEEEECCeEEEEEeCCCH-HHHHHHHHHh
Confidence 35667788875 668554 4566666543
No 127
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=37.85 E-value=46 Score=23.35 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=21.7
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
|+.+|.+|+++ .+|+.+.+.....+++.
T Consensus 95 t~~~~~~G~~v~~~~G~~~~~~~~~~i~~~ 124 (135)
T 3emx_A 95 TLVFYKEGRIVDKLVGATPWSLKVEKAREI 124 (135)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred eEEEEcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence 88899999986 57998887777655544
No 128
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=37.83 E-value=39 Score=22.40 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.2
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
.+.|.|+| +++.++.|.+.|..++.+.-
T Consensus 51 ~~~v~I~G--~~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 51 DRIITITG--TQDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp EEEEEEEE--CHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEe--CHHHHHHHHHHHHHHHHhcc
Confidence 36799999 47899999999999887753
No 129
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=37.78 E-value=50 Score=22.09 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=18.7
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++++|.+|+++ ..|. +.+++.+.++.+
T Consensus 80 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~ 108 (109)
T 3f3q_A 80 TLLLFKNGKEVAKVVGA-NPAAIKQAIAAN 108 (109)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHhh
Confidence 35667788874 4588 667888877654
No 130
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=36.80 E-value=34 Score=25.97 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=25.7
Q ss_pred ceeEEEecCCeEEEEEeecceEEE--eccCCHHHHHHHHHHHHHH
Q 029591 140 PGLIYRMKQPKIVLLIFVSGKIVI--TGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 140 pgli~r~~~~~~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~ 182 (191)
||..|.+.....+++|..+|+|+- .|.-+.+++.+.+..++..
T Consensus 136 ~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l~~ 180 (200)
T 2b7k_A 136 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKS 180 (200)
T ss_dssp -----CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHH
T ss_pred CCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 344444444457899999999974 4556666776666655544
No 131
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=36.74 E-value=31 Score=24.32 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred eEEEEEeecc----eEEEeccCCHHHHHHHHHHHHHHHHhhhc
Q 029591 150 KIVLLIFVSG----KIVITGAKVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 150 ~~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~L~~~r~ 188 (191)
.+++-|=..| .|.|+|.. +.+..|.+.|..++.+...
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~--e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA--ANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH--HHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH--HHHHHHHHHHHHHHhhHHH
Confidence 3444444455 99999974 7899999999998887664
No 132
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=36.68 E-value=52 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.7
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|. +.++....++++
T Consensus 102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 130 (139)
T 3d22_A 102 TFFFLRDGQQVDKLVGA-NKPELHKKITAI 130 (139)
T ss_dssp EEEEEETTEEEEEEESC-CHHHHHHHHHHH
T ss_pred EEEEEcCCeEEEEEeCC-CHHHHHHHHHHH
Confidence 67778999987 5687 777777666555
No 133
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=36.39 E-value=34 Score=25.72 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=25.3
Q ss_pred CceEEEeccCCHHHHHHHHHHHHHHHHHcCCC
Q 029591 67 SGKMVCTGAKSEQQSKLAARKYARIIQKLGFP 98 (191)
Q Consensus 67 SGKivitGaks~e~a~~a~~~i~~~l~~~g~~ 98 (191)
.==|+||| .|..+++..++.+.+.+++.|..
T Consensus 51 DyfVIatg-~S~rqv~Aiad~v~~~lk~~g~~ 81 (136)
T 3ups_A 51 DYMVIASG-RSSRQVTAMAQKLADRIKAATGY 81 (136)
T ss_dssp SEEEEEEC-SSHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHHHHHcCCc
Confidence 33467787 78999999999999999987764
No 134
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=35.97 E-value=57 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.0
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEF 186 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~ 186 (191)
.+.|.|+|. ++.+..|.+.|..++.+.
T Consensus 58 ~~~v~I~G~--~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 58 DRIITITGT--QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp EEEEEEEEE--HHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEcC--HHHHHHHHHHHHHHHHhh
Confidence 578999996 788999999999988765
No 135
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=35.90 E-value=45 Score=23.94 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=14.2
Q ss_pred EeccCC-HHHHHHHHHHHHHH
Q 029591 163 ITGAKV-RDETYTAFENIYPV 182 (191)
Q Consensus 163 itGaks-~~~~~~a~~~i~~~ 182 (191)
+.|+-+ .+++.+.++.+++.
T Consensus 102 ~~g~~~~~~~l~~~i~~~~~~ 122 (142)
T 1qgv_A 102 INWAMEDKQEMVDIIETVYRG 122 (142)
T ss_dssp CCSCCSCHHHHHHHHHHHHHH
T ss_pred eeeecCcHHHHHHHHHHHHHH
Confidence 556654 78888888877665
No 136
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=35.52 E-value=50 Score=22.54 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..|. +.++....++++
T Consensus 91 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 91 TFVFFKNGQKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHH
T ss_pred EEEEEECCeEEeeEcCC-CHHHHHHHHHHh
Confidence 67788999986 5787 777776665543
No 137
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=35.17 E-value=59 Score=22.63 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=19.6
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|.+|+++ ..| .+.++....++++
T Consensus 93 t~~i~~~G~~~~~~~G-~~~~~l~~~l~~~ 121 (125)
T 1r26_A 93 TFIIARSGKMLGHVIG-ANPGMLRQKLRDI 121 (125)
T ss_dssp EEEEEETTEEEEEEES-SCHHHHHHHHHHH
T ss_pred EEEEEeCCeEEEEEeC-CCHHHHHHHHHHH
Confidence 67888999986 568 5777766666554
No 138
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=35.02 E-value=27 Score=23.98 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred ceEEEEecCce--------EEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASGK--------MVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SGK--------ivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.|-..|. +.++| +.+++..|.+.+..++++.
T Consensus 45 ga~I~I~~~~~~~~~~~r~v~I~G--~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 45 GVKMVMIQDGPQNTGADKPLRITG--DPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp TSEEEECCSCCCSSCSCEEEEEEE--CTTTHHHHHHHHHHHHCCC
T ss_pred CCeEEecCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHhcc
Confidence 45666777666 99999 6678888888887777654
No 139
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=34.99 E-value=58 Score=21.54 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.0
Q ss_pred ceEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 68 GKMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 68 GKivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
+.+.++| +.+++..|.+.+..++++.
T Consensus 52 ~~v~I~G--~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 52 RIITITG--TQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp EEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEe--CHHHHHHHHHHHHHHHHhc
Confidence 5899999 4789999998888888875
No 140
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=34.04 E-value=28 Score=24.27 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAAR 86 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~ 86 (191)
++.+|.+|+++ ..|..+.++....++
T Consensus 92 t~~~~~~G~~~~~~~G~~~~~~l~~~l~ 119 (123)
T 1oaz_A 92 TLLLFKNGEVAATKVGALSKGQLKEFLD 119 (123)
T ss_dssp EEEEEESSSEEEEEESCCCHHHHHHHHT
T ss_pred EEEEEECCEEEEEEeCCCCHHHHHHHHH
Confidence 66777999987 789888877766554
No 141
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=33.94 E-value=74 Score=20.56 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=24.0
Q ss_pred eEEEEecCc----eEEEeccCCHHHHHHHHHHHHHHHHH
Q 029591 60 TTALIFASG----KMVCTGAKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 60 ~t~lIf~SG----KivitGaks~e~a~~a~~~i~~~l~~ 94 (191)
+.+.|..+| .+.++|. .+++..|.+.+.+.|++
T Consensus 36 a~I~i~~~~~~er~v~I~G~--~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 36 ARINISEGNCPERIITLAGP--TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEECSSCCSEEEEEEEEC--HHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCcEEEEEEeC--HHHHHHHHHHHHHHHhc
Confidence 445555555 5888994 78999999888887764
No 142
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=40.13 E-value=8.6 Score=25.10 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=20.0
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
++.+|.+|+++ ..|..+.+++.+.++.+
T Consensus 76 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 105 (106)
T 2yj7_A 76 TLLLFKNGQVVDRLVGAQPKEALKERIDKH 105 (106)
Confidence 45566888876 57888888887776643
No 143
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=33.82 E-value=54 Score=23.41 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=24.5
Q ss_pred eEEEEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 150 KIVLLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 150 ~~t~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
..+++|..+|+|+ ..|..+.+++.+.++.++.
T Consensus 131 ~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 131 IAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp CEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred ceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3678899999997 4577788888887776543
No 144
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.76 E-value=54 Score=22.66 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=19.4
Q ss_pred EEEeecceEE-EeccCCHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIV-ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 153 ~lIF~sGkiv-itGaks~~~~~~a~~~i~ 180 (191)
+.+|.+|++. ..|..+.+++.+.++.++
T Consensus 95 ~~~~~~G~~~~~~g~~~~~~l~~~l~~~~ 123 (140)
T 2dj1_A 95 IKILKKGQAVDYDGSRTQEEIVAKVREVS 123 (140)
T ss_dssp EEEEETTEEEECCSCCCHHHHHHHHHHHH
T ss_pred EEEEECCcEEEcCCCCCHHHHHHHHHHhc
Confidence 4556777732 468889888888777654
No 145
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.56 E-value=66 Score=21.85 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=19.7
Q ss_pred EEEEe-cCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIF-ASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf-~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+| .+|+++ ..|..+.++....+++.
T Consensus 89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~ 119 (130)
T 2kuc_A 89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLG 119 (130)
T ss_dssp EEEEECTTSCEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHH
Confidence 66677 799987 55988877766655443
No 146
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=33.39 E-value=62 Score=21.98 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=19.7
Q ss_pred EEEEec-CceEE--EeccCCHHHHHHHHHH
Q 029591 61 TALIFA-SGKMV--CTGAKSEQQSKLAARK 87 (191)
Q Consensus 61 t~lIf~-SGKiv--itGaks~e~a~~a~~~ 87 (191)
++.+|. +|+++ ..|..+.++....+++
T Consensus 85 t~~~~~~~G~~~~~~~G~~~~~~l~~~l~~ 114 (126)
T 2l57_A 85 TTVFLDKEGNKFYVHQGLMRKNNIETILNS 114 (126)
T ss_dssp EEEEECTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred EEEEECCCCCEEEEecCCCCHHHHHHHHHH
Confidence 677777 99986 5688888776665543
No 147
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=32.38 E-value=58 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=21.3
Q ss_pred eecceEEEeccCCHHHHHHHHHHHHHH
Q 029591 156 FVSGKIVITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 156 F~sGkivitGaks~~~~~~a~~~i~~~ 182 (191)
|.+|+.++.|+ +.+++.++++.+...
T Consensus 160 ving~~~~~g~-~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 160 VVNGRYMVTGH-DFEDTLRITDYLVSR 185 (193)
T ss_dssp EETTTEEECCS-SHHHHHHHHHHHHHH
T ss_pred EECCEEEecCC-CHHHHHHHHHHHHHH
Confidence 44899888999 999999999877654
No 148
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=32.07 E-value=35 Score=23.56 Aligned_cols=25 Identities=0% Similarity=0.118 Sum_probs=18.1
Q ss_pred EEEeecceEE--EeccCCHHHHHHHHH
Q 029591 153 LLIFVSGKIV--ITGAKVRDETYTAFE 177 (191)
Q Consensus 153 ~lIF~sGkiv--itGaks~~~~~~a~~ 177 (191)
+.+|.+|+++ ..|..+.+++.+.++
T Consensus 100 ~~~~~~G~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 100 IILLKNKTMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp EEEEETTEEEEEESSCCCHHHHHHHHT
T ss_pred EEEEECCEEEEEecCCCCHHHHHHHHH
Confidence 4556788876 458889888877654
No 149
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=31.90 E-value=54 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=22.4
Q ss_pred cceEEEe--ccCCHHHHHHHHHHHHHHH
Q 029591 158 SGKIVIT--GAKVRDETYTAFENIYPVL 183 (191)
Q Consensus 158 sGkivit--Gaks~~~~~~a~~~i~~~L 183 (191)
+|+..+. |+.+.+++.++++.+....
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~ 186 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKE 186 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHH
Confidence 8999888 9999999999998876554
No 150
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.50 E-value=62 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=26.9
Q ss_pred EEEEEeecc-------eEEEeccCCHHHHHHHHHHHHHHHHhhhc
Q 029591 151 IVLLIFVSG-------KIVITGAKVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 151 ~t~lIF~sG-------kivitGaks~~~~~~a~~~i~~~L~~~r~ 188 (191)
+++-|=..| .|+|+|. .+.+..|.+.|..++.+..+
T Consensus 48 ~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 48 VNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp CEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHHHh
Confidence 444444555 8999996 67889999999888877654
No 151
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=31.48 E-value=38 Score=24.69 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEeecceEEEec--cCCHHHHHHHHHHHH
Q 029591 154 LIFVSGKIVITG--AKVRDETYTAFENIY 180 (191)
Q Consensus 154 lIF~sGkivitG--aks~~~~~~a~~~i~ 180 (191)
.+|.+||.++.| +.+.+++.+.++.++
T Consensus 153 tfiINGky~v~~~~~~s~e~~~~~i~~Ll 181 (184)
T 4dvc_A 153 AVVVNNRYLVQGQSAKSLDEYFDLVNYLL 181 (184)
T ss_dssp EEEETTTEEECGGGCSSHHHHHHHHHHHT
T ss_pred EEEECCEEeeCCcCCCCHHHHHHHHHHHH
Confidence 355699977755 678888888777653
No 152
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=31.37 E-value=49 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=22.1
Q ss_pred eecceEEEeccCCHHHHHHHHHHHHHHH
Q 029591 156 FVSGKIVITGAKVRDETYTAFENIYPVL 183 (191)
Q Consensus 156 F~sGkivitGaks~~~~~~a~~~i~~~L 183 (191)
|.+|+..+.|+.+.+++.++++.++...
T Consensus 155 ving~~~~~g~~~~~~l~~~i~~~l~~~ 182 (195)
T 2znm_A 155 IVGGKYRVIFNNGFDGGVHTIKELVAKV 182 (195)
T ss_dssp EETTTEEECCCSHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3489988899988888888888776544
No 153
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=31.34 E-value=83 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=23.8
Q ss_pred ceEEEeccCCHHHHHHHHHHHHHHHHhhhc
Q 029591 159 GKIVITGAKVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 159 GkivitGaks~~~~~~a~~~i~~~L~~~r~ 188 (191)
+.|.|+|. .+.+..|.+.|..++.+.+.
T Consensus 60 r~v~I~G~--~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 60 RSCMLTGT--PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp EEEEEEEC--HHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeC--HHHHHHHHHHHHHHHHhccc
Confidence 58999996 78999999999999887664
No 154
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.15 E-value=45 Score=23.13 Aligned_cols=35 Identities=11% Similarity=0.177 Sum_probs=24.9
Q ss_pred ceEEEEecCc----eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASG----KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SG----KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.+-.+| +|.++|.. +.+..|.+.+..++++.
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~--~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPS--SDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCH--HHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCH--HHHHHHHHHHHHHHhhh
Confidence 3445555567 99999953 38888888888777764
No 155
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=30.86 E-value=50 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=22.7
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
.+.|.|+|. .+.+..|.+.|..++.+-.
T Consensus 50 ~r~v~I~G~--~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 50 NRRVTITGS--PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp EEEEEEESS--HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEcC--HHHHHHHHHHHHHHHhccc
Confidence 468899996 7889999999998887643
No 156
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=30.56 E-value=76 Score=22.60 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=24.9
Q ss_pred eEEEEecCceEEEe--ccCCHHHHHHHHHHHHHHHHHc
Q 029591 60 TTALIFASGKMVCT--GAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 60 ~t~lIf~SGKivit--Gaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+++| .+|+|+-. |....++....++.+.+.|+.+
T Consensus 120 ~~~li-~~G~i~~~~~g~~~~~~~~~~~~~l~~~l~~l 156 (159)
T 2a4v_A 120 SHFIF-VDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 156 (159)
T ss_dssp EEEEE-ETTEEEEEEESCCHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEE-cCCEEEEEEccCCccccHHHHHHHHHHHHHHh
Confidence 68888 99999854 5555566677777777766654
No 157
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=30.28 E-value=30 Score=24.26 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=21.6
Q ss_pred EEEEe-cCceEE----EeccCCHHHHHHHHHHH
Q 029591 61 TALIF-ASGKMV----CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf-~SGKiv----itGaks~e~a~~a~~~i 88 (191)
++.+| .+|+++ ..|..+.++....++++
T Consensus 94 t~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 94 TILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp EEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence 66777 899996 88999988877665543
No 158
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=30.20 E-value=67 Score=24.70 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.3
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
|+++|.+|+++ ..|..+.+++.+.++.+.
T Consensus 87 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l 117 (222)
T 3dxb_A 87 TLLLFKNGEVAATKVGALSKGQLKEFLDANL 117 (222)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred EEEEEECCeEEEEeccccChHHHHHHHHhhc
Confidence 56778899885 789999999988887654
No 159
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=29.71 E-value=71 Score=24.09 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=23.8
Q ss_pred EEEEecCceE--EEeccCCHHHHHHHHHHHH
Q 029591 61 TALIFASGKM--VCTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 61 t~lIf~SGKi--vitGaks~e~a~~a~~~i~ 89 (191)
++.++.+|+. ...|+.+.++...+++++.
T Consensus 179 t~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~ 209 (216)
T 2in3_A 179 ALVVESGTDRYLITTGYRPIEALRQLLDTWL 209 (216)
T ss_dssp EEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred eEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence 5666779998 7899999999988887764
No 160
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.02 E-value=82 Score=21.31 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=21.1
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARKY 88 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~i 88 (191)
++.+|..|+.+ ..|..+.++....+++.
T Consensus 86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~ 115 (133)
T 1x5d_A 86 TIKIFQKGESPVDYDGGRTRSDIVSRALDL 115 (133)
T ss_dssp EEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred eEEEEeCCCceEEecCCCCHHHHHHHHHHH
Confidence 77788889865 66888888877766655
No 161
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=28.93 E-value=79 Score=23.85 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=59.3
Q ss_pred EEEEecCce---EEEeccCCHHHHHHHHHHHHHHHHHcCCCCc---------c-cceeEEeEEEEEEcCCc---cChhHH
Q 029591 61 TALIFASGK---MVCTGAKSEQQSKLAARKYARIIQKLGFPAK---------F-KDFKIQNIVGSCDVKFP---IRLEGL 124 (191)
Q Consensus 61 t~lIf~SGK---ivitGaks~e~a~~a~~~i~~~l~~~g~~~~---------~-~~~~i~Nivat~~l~~~---i~L~~l 124 (191)
|+.+|.+|+ ....|..+.++...-+..+...- .-..... . ....+.+..|+.+-++. -.++.+
T Consensus 81 t~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~-~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l 159 (226)
T 1a8l_A 81 ATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVS-REETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKF 159 (226)
T ss_dssp EEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHH-HTCCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHH
T ss_pred eEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHH
Confidence 788888884 56789888777766555543221 1111111 1 12225555555543332 224555
Q ss_pred HHhcC----Cc---cccccCCCceeE--EEecCCeEEEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 125 AYSHG----AF---SSYEPELFPGLI--YRMKQPKIVLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 125 a~~~~----~~---~~YePe~fpgli--~r~~~~~~t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
+.+++ .+ ...+-+..+.+. |.+.. --|+.+|.+|+.+ ..|..+.+++.+.++..
T Consensus 160 ~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~ 224 (226)
T 1a8l_A 160 AIENTKAGKGKILGDMVEAIEYPEWADQYNVMA-VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224 (226)
T ss_dssp HHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCS-SCEEEEEETTEEEEEEESCCCHHHHHHHHHHH
T ss_pred HHhcccccCCcEEEEEEEcccCHHHHHhCCCcc-cCeEEEEeCCceeEEEcCCCCHHHHHHHHHHh
Confidence 55432 01 111111111111 11111 1247888999865 68999998887777654
No 162
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=28.76 E-value=38 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.4
Q ss_pred cceEEEeccC-CHHHHHHH
Q 029591 158 SGKIVITGAK-VRDETYTA 175 (191)
Q Consensus 158 sGkivitGak-s~~~~~~a 175 (191)
+|+++..|.. +.+++.+.
T Consensus 57 ~G~~~~~G~~~~~~~l~~~ 75 (77)
T 1ilo_A 57 DGELKIMGRVASKEEIKKI 75 (77)
T ss_dssp TTEEEECSSCCCHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHH
Confidence 8888888987 88887764
No 163
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=28.43 E-value=38 Score=22.38 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=18.3
Q ss_pred EEEeecce----EEEeccCCHHHHHHHHHH
Q 029591 153 LLIFVSGK----IVITGAKVRDETYTAFEN 178 (191)
Q Consensus 153 ~lIF~sGk----ivitGaks~~~~~~a~~~ 178 (191)
+.+|.+|+ ....|..+.+++.+.++.
T Consensus 85 ~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~ 114 (120)
T 1mek_A 85 IKFFRNGDTASPKEYTAGREADDIVNWLKK 114 (120)
T ss_dssp EEEEESSCSSSCEECCCCSSHHHHHHHHHT
T ss_pred EEEEeCCCcCCcccccCccCHHHHHHHHHh
Confidence 45667787 456788888877766654
No 164
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=28.38 E-value=45 Score=23.45 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=19.6
Q ss_pred ceEEEeccCCHHHHHHHHHHHHHHHHH
Q 029591 68 GKMVCTGAKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 68 GKivitGaks~e~a~~a~~~i~~~l~~ 94 (191)
+.|.++| +.+++..|.+.+.+++++
T Consensus 55 r~V~I~G--~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 55 KLFIIRG--SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp EEEEEES--CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEEC--CHHHHHHHHHHHHHHHhc
Confidence 6889999 678888888777666554
No 165
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.31 E-value=87 Score=21.57 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=25.2
Q ss_pred ceEEEEecCc-------eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASG-------KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SG-------KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.|-.+| .|.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~i~~~g~~~~~~~~V~I~G~--~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 47 DVNIQFPDKDDGNQPQDQITITGY--EKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEECCCTTTCSSCSSEEEEESC--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCCccEEEEEeC--HHHHHHHHHHHHHHHHHH
Confidence 4566666777 8999994 677777777777766653
No 166
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=28.08 E-value=45 Score=25.34 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEeecceE--EEeccCCHHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKI--VITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 152 t~lIF~sGki--vitGaks~~~~~~a~~~i~~ 181 (191)
|+.+|.+|++ ...|..+.+++.+.++..++
T Consensus 171 t~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~ 202 (210)
T 3apq_A 171 SLFIFRSGMAAVKYNGDRSKESLVAFAMQHVR 202 (210)
T ss_dssp EEEEECTTSCCEECCSCCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCceeEecCCCCHHHHHHHHHHhCc
Confidence 4566788886 45788899888888876654
No 167
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=27.95 E-value=57 Score=26.83 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccce----------eEEeEEEEEE
Q 029591 80 QSKLAARKYARIIQKLGFPAKFKDF----------KIQNIVGSCD 114 (191)
Q Consensus 80 ~a~~a~~~i~~~l~~~g~~~~~~~~----------~i~Nivat~~ 114 (191)
.-+++.+-|.+.|+++|+++..++| +.+||+|+..
T Consensus 30 ~~~~~~~~i~~~l~~~g~~v~~~~f~~~~~~~~~~~~~Nii~~~~ 74 (312)
T 4f9u_A 30 GHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGTIN 74 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTEEEEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeEEEecCCCCceeEEEEEEEEC
Confidence 3456777899999999998755443 4579999876
No 168
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=27.85 E-value=90 Score=22.81 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.8
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
.+.|.|+|. .+.+..|.+.|..++.+.+
T Consensus 135 ~~~v~I~G~--~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 135 EKIAHIMGP--PDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcC--HHHHHHHHHHHHHHHhhhh
Confidence 578999996 6789999999998887764
No 169
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=27.63 E-value=56 Score=24.01 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=26.8
Q ss_pred EEEEeecceEEE--eccCCHHHHHHHHHHHHHHHHh
Q 029591 152 VLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLTE 185 (191)
Q Consensus 152 t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~~ 185 (191)
+++|...|+|+- .|..+.+++.+.++.++..+..
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~~ 174 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVII 174 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 799999999964 5888888888888877665543
No 170
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=27.56 E-value=58 Score=22.69 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEeecceEE--EeccCCHHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIV--ITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 153 ~lIF~sGkiv--itGaks~~~~~~a~~~i~~ 181 (191)
++|=.+|+|+ ..|..+.+++.+.++.++.
T Consensus 111 ~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 141 (153)
T 2l5o_A 111 VLIGKKGEILKTYVGEPDFGKLYQEIDTAWR 141 (153)
T ss_dssp EEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3333899985 7888898888888776543
No 171
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=27.05 E-value=81 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.1
Q ss_pred CceEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 67 SGKMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 67 SGKivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
+|.+.++|. .+.+..|.+.+..++++.
T Consensus 59 ~~~V~I~G~--~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 59 SNQIKITGT--KEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEC--HHHHHHHHHHHHHHhhcc
Confidence 689999995 788888888888877664
No 172
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=27.02 E-value=56 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=20.5
Q ss_pred ecceEEE--eccCCHHHHHHHHHHHH
Q 029591 157 VSGKIVI--TGAKVRDETYTAFENIY 180 (191)
Q Consensus 157 ~sGkivi--tGaks~~~~~~a~~~i~ 180 (191)
.+|+..+ .|+.+.+++.++++.+.
T Consensus 158 vng~~~v~~~Ga~~~e~~~~~i~~ll 183 (185)
T 3feu_A 158 VNGKYNVLIGGHDDPKQIADTIRYLL 183 (185)
T ss_dssp ETTTEEECGGGCSSHHHHHHHHHHHH
T ss_pred ECCEEEEecCCCCCHHHHHHHHHHHH
Confidence 4899888 89999999999988764
No 173
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=27.00 E-value=78 Score=23.89 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=22.3
Q ss_pred ecceEEEeccCCHHHHHHHHHHHHHHHHh
Q 029591 157 VSGKIVITGAKVRDETYTAFENIYPVLTE 185 (191)
Q Consensus 157 ~sGkivitGaks~~~~~~a~~~i~~~L~~ 185 (191)
.+|+..+.|+ +.+++.++++.+.....+
T Consensus 160 vng~~~~~~~-~~e~l~~~i~~ll~k~r~ 187 (193)
T 3hz8_A 160 VGGKYKVEFA-DWESGMNTIDLLADKVRE 187 (193)
T ss_dssp ETTTEEECCS-SHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEecCC-CHHHHHHHHHHHHHHHHH
Confidence 4899998888 999999998877665443
No 174
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=26.74 E-value=78 Score=23.02 Aligned_cols=30 Identities=0% Similarity=-0.048 Sum_probs=24.6
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
.+++|..+|+|+ ..|..+.+++.+.++.++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 568889999996 568888888988888765
No 175
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=26.61 E-value=44 Score=22.93 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=28.8
Q ss_pred EEecCceEEEeccCCHHHHHHHHHHHHHHHHHcCCC
Q 029591 63 LIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFP 98 (191)
Q Consensus 63 lIf~SGKivitGaks~e~a~~a~~~i~~~l~~~g~~ 98 (191)
.=|.+||+.... ++......++.++.+.+.++.-+
T Consensus 32 FeFd~GkillP~-~~d~~~~~~~sEIN~~I~~L~~e 66 (78)
T 2jro_A 32 LEFEKGRFLLPR-KSLPKVKQAILELNELIEAQNHQ 66 (78)
T ss_dssp EEEETTEECCCS-SCCHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCEEeCCc-cccHHHHHHHHHHHHHHHHHHHH
Confidence 458999999987 45678889999999999988654
No 176
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=26.26 E-value=1e+02 Score=22.50 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.0
Q ss_pred eEEEEecCceEEEe--ccCCHHHHHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMVCT--GAKSEQQSKLAARKYARIIQ 93 (191)
Q Consensus 60 ~t~lIf~SGKivit--Gaks~e~a~~a~~~i~~~l~ 93 (191)
.+++|..+|+|+-. |..+.++....++++++.++
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 57788899999754 88889998888888766654
No 177
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=26.25 E-value=36 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=28.5
Q ss_pred EEEEee-cceEE--Eecc-------CCHHHHHHHHHHHHHHHHhhhc
Q 029591 152 VLLIFV-SGKIV--ITGA-------KVRDETYTAFENIYPVLTEFRK 188 (191)
Q Consensus 152 t~lIF~-sGkiv--itGa-------ks~~~~~~a~~~i~~~L~~~r~ 188 (191)
|+++|. +|+++ ++|+ -+.++..+.++.+...|.+++.
T Consensus 103 T~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~ 149 (151)
T 3ph9_A 103 RIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQS 149 (151)
T ss_dssp EEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred EEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence 567776 89986 4798 5668888899988888887764
No 178
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=26.05 E-value=1.1e+02 Score=21.54 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=21.7
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 160 KIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 160 kivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
.|+|+|. .+.++.|.+.|..++.+..
T Consensus 57 ~V~I~G~--~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 57 IAHIMGP--PDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHhccc
Confidence 5889986 7889999999999887654
No 179
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=25.28 E-value=95 Score=22.80 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=28.6
Q ss_pred ceEEEEecCc--------eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASG--------KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SG--------KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.+..+| .+.++| +.+++..|.+.+..++++.
T Consensus 115 ga~I~i~~~~~~~~~~~~~v~I~G--~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 115 AAEVVVPRDQTPDENDQVIVKIIG--HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CCEEECCTTCCCCTTSEEEEEEEE--CHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCCCCCceEEEEEe--CHHHHHHHHHHHHHHHHHH
Confidence 4678887777 689999 5788999998888888765
No 180
>3it4_B Arginine biosynthesis bifunctional protein ARGJ beta chain; ornithine acetyltransferase, structural genomics; 1.70A {Mycobacterium tuberculosis} PDB: 3it6_B
Probab=25.16 E-value=53 Score=26.48 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.4
Q ss_pred eEEEeccCCHHHHHHHHHHHHHH
Q 029591 69 KMVCTGAKSEQQSKLAARKYARI 91 (191)
Q Consensus 69 KivitGaks~e~a~~a~~~i~~~ 91 (191)
.|.++||+|+++|+.+++.++.-
T Consensus 88 ~v~V~gA~s~~~A~~iA~~Ia~S 110 (205)
T 3it4_B 88 TVTVTGAATEDDALVAARQIARD 110 (205)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHHHhcC
Confidence 36789999999999999887653
No 181
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=25.09 E-value=54 Score=24.07 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=22.1
Q ss_pred EEEEe-ecceEE--Eecc----------CCHHHHHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIV--ITGA----------KVRDETYTAFENIYPVL 183 (191)
Q Consensus 152 t~lIF-~sGkiv--itGa----------ks~~~~~~a~~~i~~~L 183 (191)
|+++| .+|+++ +.|. .+.+++.+.++.++..+
T Consensus 106 t~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 150 (164)
T 1sen_A 106 RILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERL 150 (164)
T ss_dssp EEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhc
Confidence 56777 789987 6786 56677777777655443
No 182
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.07 E-value=52 Score=23.21 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=18.7
Q ss_pred EEEEeecceEE--EeccC-------CHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAK-------VRDETYTAFEN 178 (191)
Q Consensus 152 t~lIF~sGkiv--itGak-------s~~~~~~a~~~ 178 (191)
|+++|.+|+++ ++|.. +.+++++.++.
T Consensus 83 t~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 83 TIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSE 118 (135)
T ss_dssp EEEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHH
Confidence 56778888875 67876 56666666554
No 183
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=25.05 E-value=70 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEe-ecceEE--EeccCCHHHHHHHHHHH
Q 029591 153 LLIF-VSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 153 ~lIF-~sGkiv--itGaks~~~~~~a~~~i 179 (191)
+.++ .+|+|+ ..|..+.+++.+.++.+
T Consensus 108 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~l 137 (138)
T 4evm_A 108 QAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137 (138)
T ss_dssp EEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred EEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence 4455 889985 67888888888877653
No 184
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=24.91 E-value=1.4e+02 Score=20.84 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.2
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 69 KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 69 KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.|.++|. .+++..|.+.+..++++.
T Consensus 57 ~V~I~G~--~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 57 IAHIMGP--PDRCEHAARIINDLLQSL 81 (106)
T ss_dssp EEEEESS--HHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC--HHHHHHHHHHHHHHHhcc
Confidence 5889984 788888888888888764
No 185
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.85 E-value=68 Score=21.77 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=18.1
Q ss_pred EEEeecceE-EEeccCCHHHHHHHHHHH
Q 029591 153 LLIFVSGKI-VITGAKVRDETYTAFENI 179 (191)
Q Consensus 153 ~lIF~sGki-vitGaks~~~~~~a~~~i 179 (191)
+.+|.+|++ ...|..+.+++.+.++..
T Consensus 81 ~~~~~~G~~~~~~G~~~~~~l~~~l~~~ 108 (126)
T 1x5e_A 81 IYHCKDGEFRRYQGPRTKKDFINFISDK 108 (126)
T ss_dssp EEEEETTEEEECCSCCCHHHHHHHHHTC
T ss_pred EEEEeCCeEEEeecCCCHHHHHHHHHHH
Confidence 345577875 256888888877776643
No 186
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=24.57 E-value=61 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.3
Q ss_pred eEEEeccCCHHHHHHHHHHHHHHHHhhh
Q 029591 160 KIVITGAKVRDETYTAFENIYPVLTEFR 187 (191)
Q Consensus 160 kivitGaks~~~~~~a~~~i~~~L~~~r 187 (191)
.|.|+|.+. .+..|.+.|..++.+.+
T Consensus 62 ~V~I~G~~~--~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 62 TVVIRGPSS--DVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp EEEEESCHH--HHHHHHHHHHHHHHHHS
T ss_pred eEEEEcCHH--HHHHHHHHHHHHHhhhh
Confidence 999999755 89999999999887765
No 187
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=24.50 E-value=51 Score=23.29 Aligned_cols=25 Identities=16% Similarity=-0.067 Sum_probs=19.7
Q ss_pred EEEEeecceEEEeccCCHHHHHHHH
Q 029591 152 VLLIFVSGKIVITGAKVRDETYTAF 176 (191)
Q Consensus 152 t~lIF~sGkivitGaks~~~~~~a~ 176 (191)
++++|.+|+.+..|.-+.+++++.+
T Consensus 82 ~l~~~~dG~~v~~g~~~~~~L~~~L 106 (107)
T 2fgx_A 82 VLFAVNEDKELCHYFLDSDVIGAYL 106 (107)
T ss_dssp EEEETTTTEEEECSSCCCHHHHHHH
T ss_pred eEEEEECCEEEEecCCCHHHHHHHh
Confidence 3456889999888998888887764
No 188
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=24.47 E-value=63 Score=23.02 Aligned_cols=28 Identities=11% Similarity=0.228 Sum_probs=21.7
Q ss_pred EEEeecceEEEeccC-CHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIVITGAK-VRDETYTAFENIY 180 (191)
Q Consensus 153 ~lIF~sGkivitGak-s~~~~~~a~~~i~ 180 (191)
++|=.+|+|+-.|.. +.+++.+.++.+.
T Consensus 135 ~lid~~G~i~~~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 135 VIMDKSSNVLYAGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp EEEETTCCEEEEEESCCHHHHHHHHHHC-
T ss_pred EEEcCCCcEEEeCCCCCHHHHHHHHHHHh
Confidence 333389999999999 9999988887653
No 189
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=24.32 E-value=1e+02 Score=20.97 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=21.6
Q ss_pred EEEEe-ecceEEE--eccCCHHHHHHHHHHHH
Q 029591 152 VLLIF-VSGKIVI--TGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF-~sGkivi--tGaks~~~~~~a~~~i~ 180 (191)
++.++ .+|+++- .|..+.+++.+.++.++
T Consensus 113 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l 144 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVL 144 (148)
T ss_dssp EEEEECTTCBEEEEEESCSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcEEEEecCCCCHHHHHHHHHHHH
Confidence 45566 8999865 57788888888887654
No 190
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=24.00 E-value=1e+02 Score=22.57 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.1
Q ss_pred CceEEEeccCCHHHHHHHHHHHHHHHHH-cCCC
Q 029591 67 SGKMVCTGAKSEQQSKLAARKYARIIQK-LGFP 98 (191)
Q Consensus 67 SGKivitGaks~e~a~~a~~~i~~~l~~-~g~~ 98 (191)
+|-++++| ++.+.+.|++...+.+++ +|+.
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~~l~f~ 104 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGRLLNYT 104 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHHHHCCB
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhhccCeE
Confidence 68889999 899999999999999876 5774
No 191
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=23.81 E-value=2.8e+02 Score=22.10 Aligned_cols=41 Identities=27% Similarity=0.279 Sum_probs=26.0
Q ss_pred EecCCceEEEEecCceEEEec-cCCHHHHHH-HHHHHHHHHHH
Q 029591 54 RIREPKTTALIFASGKMVCTG-AKSEQQSKL-AARKYARIIQK 94 (191)
Q Consensus 54 R~~~P~~t~lIf~SGKivitG-aks~e~a~~-a~~~i~~~l~~ 94 (191)
+..+|.-++.++-.|+...+| .+|..+|+. |++...+.|++
T Consensus 221 ~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 221 RTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 456777788888888776654 367777664 44445555543
No 192
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=23.58 E-value=87 Score=22.93 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=25.3
Q ss_pred EEEEecCceEEEe--ccCCHHHHHHHHHHHHHHHH
Q 029591 61 TALIFASGKMVCT--GAKSEQQSKLAARKYARIIQ 93 (191)
Q Consensus 61 t~lIf~SGKivit--Gaks~e~a~~a~~~i~~~l~ 93 (191)
+++|..+|+|+-. |..+.++....++++++.+.
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~~~ 173 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVI 173 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 8899999999754 77788887777777655443
No 193
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=23.37 E-value=45 Score=23.24 Aligned_cols=27 Identities=30% Similarity=0.207 Sum_probs=21.8
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHhh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTEF 186 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~~ 186 (191)
.|.|.|+|... .+..|.+.|..++.+-
T Consensus 61 ~~~V~I~G~~~--~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 61 SRLIKISGTQK--EVAAAKHLILEKVSED 87 (104)
T ss_dssp EEEEEEEEEHH--HHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCHH--HHHHHHHHHHHHHhhC
Confidence 68899999655 6899999998888653
No 194
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=23.32 E-value=79 Score=21.55 Aligned_cols=26 Identities=4% Similarity=-0.030 Sum_probs=17.8
Q ss_pred EEEeecce----EEEeccCCHHHHHHHHHH
Q 029591 153 LLIFVSGK----IVITGAKVRDETYTAFEN 178 (191)
Q Consensus 153 ~lIF~sGk----ivitGaks~~~~~~a~~~ 178 (191)
+++|..|+ +...|.++.+++.+-++.
T Consensus 96 ~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 96 MRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp EEEECSSCSSSCEECCSCCCHHHHHHHHHH
T ss_pred EEEEeCCCCCCceEecCCccHHHHHHHHHh
Confidence 34555553 567899999888877654
No 195
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=23.16 E-value=54 Score=21.13 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=19.7
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHH
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~ 184 (191)
.+.|.|+|. ++.+..|.+.|..++.
T Consensus 50 ~~~v~I~G~--~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 50 NRRVTITGS--PAATQAAQYLISQRVT 74 (76)
T ss_dssp EEEEEEEES--HHHHHHHHHHHHHHCC
T ss_pred eeEEEEEeC--HHHHHHHHHHHHHHHh
Confidence 467889996 7789999988877653
No 196
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=22.93 E-value=82 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=20.1
Q ss_pred eecceEEEe--ccCCHHHHHHHHHHHH
Q 029591 156 FVSGKIVIT--GAKVRDETYTAFENIY 180 (191)
Q Consensus 156 F~sGkivit--Gaks~~~~~~a~~~i~ 180 (191)
|.+|+..+. |+.+.+++.++++.+.
T Consensus 167 ~ing~~~~~~~g~~~~~~l~~~i~~~l 193 (195)
T 3c7m_A 167 VVNGKYLIYTKSIKSIDAMADLIRELA 193 (195)
T ss_dssp EETTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred EECCEEEeccCCCCCHHHHHHHHHHHH
Confidence 348998776 8999999999988754
No 197
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=22.92 E-value=78 Score=25.74 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=24.9
Q ss_pred cceEE-EeccCCHHHHHHHHHHHHHHHHhh
Q 029591 158 SGKIV-ITGAKVRDETYTAFENIYPVLTEF 186 (191)
Q Consensus 158 sGkiv-itGaks~~~~~~a~~~i~~~L~~~ 186 (191)
+||++ |+|+-+..+++.|++.....+.++
T Consensus 83 ~G~~i~iigG~dvs~V~~av~~~~~~~~~~ 112 (220)
T 3u27_C 83 AGEVIGILSGPTPAEVKSGLAAAVDFIENE 112 (220)
T ss_dssp TTTEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEecCCCHHHHHHHHHHHHHHHHhh
Confidence 58888 999989999999999988887653
No 198
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.86 E-value=99 Score=21.58 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=25.0
Q ss_pred ceEEEEecCc----eEEEeccCCHHHHHHHHHHHHHHHHHc
Q 029591 59 KTTALIFASG----KMVCTGAKSEQQSKLAARKYARIIQKL 95 (191)
Q Consensus 59 ~~t~lIf~SG----KivitGaks~e~a~~a~~~i~~~l~~~ 95 (191)
.+.+.|-..| .|.++|. .+.+..|.+.+..++++.
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~--~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGL--AANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEEC--HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcC--HHHHHHHHHHHHHHHhhH
Confidence 3555555566 9999995 377888888777777654
No 199
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=22.53 E-value=1.2e+02 Score=21.59 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.8
Q ss_pred EEEEeecceEE--EeccCCHHHHHHHHHHHH
Q 029591 152 VLLIFVSGKIV--ITGAKVRDETYTAFENIY 180 (191)
Q Consensus 152 t~lIF~sGkiv--itGaks~~~~~~a~~~i~ 180 (191)
++.+|.+|+++ ..|. +.+++.+.++.++
T Consensus 88 t~~~~~~G~~~~~~~G~-~~~~l~~~i~~~l 117 (153)
T 2wz9_A 88 TFLFFKNSQKIDRLDGA-HAPELTKKVQRHA 117 (153)
T ss_dssp EEEEEETTEEEEEEESS-CHHHHHHHHHHHS
T ss_pred EEEEEECCEEEEEEeCC-CHHHHHHHHHHHh
Confidence 35666788875 5675 6667776666543
No 200
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=22.52 E-value=31 Score=24.48 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=22.4
Q ss_pred EEEeecceEEE--eccCCHHHHHHHHHHHHHHH
Q 029591 153 LLIFVSGKIVI--TGAKVRDETYTAFENIYPVL 183 (191)
Q Consensus 153 ~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L 183 (191)
++|-.+|+++- .|..+.+++.+.++.+...+
T Consensus 126 ~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~~~ 158 (164)
T 2h30_A 126 ALIGKDGDVQRIVKGSINEAQALALIRNPNADL 158 (164)
T ss_dssp EEECTTSCEEEEEESCCCHHHHHHHHHCTTCCC
T ss_pred EEECCCCcEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 44448999864 58899998888887665433
No 201
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=22.44 E-value=1.2e+02 Score=21.03 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCceEEEEecCc-eEEEec-cCCHHHHHH-HHHHHHHHHHHcCC
Q 029591 57 EPKTTALIFASG-KMVCTG-AKSEQQSKL-AARKYARIIQKLGF 97 (191)
Q Consensus 57 ~P~~t~lIf~SG-KivitG-aks~e~a~~-a~~~i~~~l~~~g~ 97 (191)
+|.-++.++-+| +...+| .+|..+|+. |++..++.|.+.+.
T Consensus 35 ~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 78 (99)
T 1whq_A 35 RQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRINE 78 (99)
T ss_dssp SEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 445677788899 677666 577777764 45556666766543
No 202
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=22.44 E-value=1.4e+02 Score=20.81 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=22.5
Q ss_pred eEEEEecCceEEE--eccCCHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMVC--TGAKSEQQSKLAARKYA 89 (191)
Q Consensus 60 ~t~lIf~SGKivi--tGaks~e~a~~a~~~i~ 89 (191)
.+++|..+|+++- .|..+.++....+++++
T Consensus 129 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 160 (164)
T 2ggt_A 129 IMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 160 (164)
T ss_dssp EEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred eEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 6888889999985 46677777777666653
No 203
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=22.03 E-value=1.4e+02 Score=20.32 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCceecCCCCceEEEEecCCceEEEEecCceEEEeccCCHHHHHHHHHHHHHHHHHcCCC
Q 029591 39 RNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFP 98 (191)
Q Consensus 39 ~n~eYePe~fpglv~R~~~P~~t~lIf~SGKivitGaks~e~a~~a~~~i~~~l~~~g~~ 98 (191)
+.+.|+++.-..+..=..+-+-....|+.=+. |. +.|+|+.++-++.+.|++.|-.
T Consensus 9 pGVsw~kR~~~WlA~W~e~g~rrsRtF~~k~y---Gf-~~e~Ak~~AIef~k~le~~Gr~ 64 (77)
T 3igm_B 9 PGVSWNKRMCAWLAFFYDGASRRSRTFHPKHF---NM-DKEKARLAAVEFMKTVENNGRK 64 (77)
T ss_dssp TTEEEETTTTEEEEEEEETTEEEEEEECCTTH---HH-HHHHHHHHHHHHHHHTCSSSCC
T ss_pred CcEEeecCCceEEEEEecCCeEeeeeechhhc---Cc-CHHHHHHHHHHHHHHHHhcCce
Confidence 45556655433443333333444455543322 21 4579999999998888888753
No 204
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=21.89 E-value=1.3e+02 Score=21.77 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=23.7
Q ss_pred eEEEEecCceEE--EeccCCHHHHHHHHHHHH
Q 029591 60 TTALIFASGKMV--CTGAKSEQQSKLAARKYA 89 (191)
Q Consensus 60 ~t~lIf~SGKiv--itGaks~e~a~~a~~~i~ 89 (191)
.+++|..+|+++ ..|..+.++....+++++
T Consensus 149 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll 180 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180 (183)
T ss_dssp EEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 478888999997 468778888888777764
No 205
>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} SCOP: d.14.1.10 PDB: 1rr9_A*
Probab=21.80 E-value=1.3e+02 Score=23.63 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=29.4
Q ss_pred cCceEEEeccCCHHHHHHHHHHHHHHHH----HcCCCCc-ccceeE
Q 029591 66 ASGKMVCTGAKSEQQSKLAARKYARIIQ----KLGFPAK-FKDFKI 106 (191)
Q Consensus 66 ~SGKivitGaks~e~a~~a~~~i~~~l~----~~g~~~~-~~~~~i 106 (191)
..|++.+||-- .+.++++.+++...++ ++|++.+ +.+..|
T Consensus 36 G~g~~~itG~~-~~~~kES~~~a~s~~~~~~~~~g~~~~~~~~~di 80 (200)
T 1rre_A 36 GKGKLTYTGSL-GEVMQESIQAALTVVRARAEKLGINPDFYEKRDI 80 (200)
T ss_dssp CSSCEEEESSB-CHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEE
T ss_pred CCceEEEecCc-hHHHHHHHHHHHHHHHHhHHhcCCCcccCCcceE
Confidence 57889999954 4678888888888888 7888755 443333
No 206
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.70 E-value=1.4e+02 Score=17.76 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=23.9
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHH-cCCCCc
Q 029591 70 MVCTGAKSEQQSKLAARKYARIIQK-LGFPAK 100 (191)
Q Consensus 70 ivitGaks~e~a~~a~~~i~~~l~~-~g~~~~ 100 (191)
|.+.+.+|.++-+.-++.+.+.+.+ +|++..
T Consensus 5 i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~ 36 (61)
T 2opa_A 5 VKMLEGRTDEQKRNLVEKVTEAVKETTGASEE 36 (61)
T ss_dssp EEEESCCCHHHHHHHHHHHHHHHHHHHCCCGG
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 3444557999998889999999987 688753
No 207
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=21.62 E-value=1.2e+02 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=27.4
Q ss_pred EEEEEeecceEEE--eccCCHHHHHHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIVI--TGAKVRDETYTAFENIYPVLT 184 (191)
Q Consensus 151 ~t~lIF~sGkivi--tGaks~~~~~~a~~~i~~~L~ 184 (191)
.+++|-.+|+|+- .|..+.+++.+.++.++..+.
T Consensus 135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~l~ 170 (176)
T 3kh7_A 135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQLL 170 (176)
T ss_dssp EEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHHHH
T ss_pred eEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 5788889999974 488899999988888776654
No 208
>1vra_B Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=21.52 E-value=56 Score=26.52 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.5
Q ss_pred EEEeccCCHHHHHHHHHHHHH
Q 029591 70 MVCTGAKSEQQSKLAARKYAR 90 (191)
Q Consensus 70 ivitGaks~e~a~~a~~~i~~ 90 (191)
|.++||+|+++|+.+++.++.
T Consensus 95 v~V~GA~s~~~A~~iA~sIa~ 115 (215)
T 1vra_B 95 VEVTGAANDQEAGMVAKQIVG 115 (215)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcC
Confidence 678999999999999888764
No 209
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.45 E-value=1.1e+02 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEecCceEE--EeccCCHHHHHHHHHH
Q 029591 61 TALIFASGKMV--CTGAKSEQQSKLAARK 87 (191)
Q Consensus 61 t~lIf~SGKiv--itGaks~e~a~~a~~~ 87 (191)
|+.+|.+|+++ .+|..+.++....+..
T Consensus 83 t~~~~~~G~~~~~~~g~~~~~~l~~~l~~ 111 (287)
T 3qou_A 83 TVYLFQNGQPVDGFQGPQPEEAIRALLDX 111 (287)
T ss_dssp EEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEECCEEEEEeeCCCCHHHHHHHHHH
Confidence 88888999988 7899888777665544
No 210
>3i96_A Ethanolamine utilization protein EUTS; structural protein; HET: NHE; 1.65A {Escherichia coli} PDB: 3ia0_A
Probab=21.30 E-value=1.1e+02 Score=22.46 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=22.1
Q ss_pred cceEEEeccCCHHHHHHHHHHHHHHHHh
Q 029591 158 SGKIVITGAKVRDETYTAFENIYPVLTE 185 (191)
Q Consensus 158 sGkivitGaks~~~~~~a~~~i~~~L~~ 185 (191)
+|.++++| +..+++.|++.....+.+
T Consensus 74 ~G~vii~G--dVsaV~aAvea~~~~~~~ 99 (119)
T 3i96_A 74 SGALVIYG--SVGAVEEALSQTVSGLGR 99 (119)
T ss_dssp TCEEEEEE--CHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEE--CHHHHHHHHHHHHHHHhh
Confidence 57889999 888999999988877654
No 211
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=21.18 E-value=1.1e+02 Score=22.62 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.7
Q ss_pred CceEEEe--ccCCHHHHHHHHHHHHHHHHH
Q 029591 67 SGKMVCT--GAKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 67 SGKivit--Gaks~e~a~~a~~~i~~~l~~ 94 (191)
+|+..+. |+.+.++....++.++...++
T Consensus 159 ng~~~~~~~G~~~~e~l~~~i~~l~~k~~~ 188 (192)
T 3h93_A 159 NGKYRFDIGSAGGPEETLKLADYLIEKERA 188 (192)
T ss_dssp TTTEEEEHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 8999888 999999999999888766543
No 212
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=21.09 E-value=68 Score=19.55 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=17.9
Q ss_pred EeecceEEEeccCCHHHHHHHHHH
Q 029591 155 IFVSGKIVITGAKVRDETYTAFEN 178 (191)
Q Consensus 155 IF~sGkivitGaks~~~~~~a~~~ 178 (191)
=|.+|++.+++.-+.+++.++++.
T Consensus 34 ~~~~~~~~v~~~~~~~~i~~~i~~ 57 (68)
T 3iwl_A 34 DLPNKKVCIESEHSMDTLLATLKK 57 (68)
T ss_dssp ETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EcCCCEEEEEecCCHHHHHHHHHH
Confidence 356788888887788887777653
No 213
>2v4i_B Glutamate N-acetyltransferase 2 beta chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_D* 2yep_B* 2vzk_B* 2w4n_B* 2yep_F*
Probab=21.09 E-value=58 Score=26.41 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.3
Q ss_pred EEEeccCCHHHHHHHHHHHHH
Q 029591 70 MVCTGAKSEQQSKLAARKYAR 90 (191)
Q Consensus 70 ivitGaks~e~a~~a~~~i~~ 90 (191)
|.++||+|.++|+..++.++.
T Consensus 88 V~V~GA~s~~~A~~vA~sIa~ 108 (213)
T 2v4i_B 88 VQVTGARDDAQAKRVGKTVVN 108 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHcc
Confidence 678999999999999888764
No 214
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=21.01 E-value=80 Score=20.30 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=22.4
Q ss_pred eEEEEEeecc----eEEEeccCCHHHHHHHHHHHHHH
Q 029591 150 KIVLLIFVSG----KIVITGAKVRDETYTAFENIYPV 182 (191)
Q Consensus 150 ~~t~lIF~sG----kivitGaks~~~~~~a~~~i~~~ 182 (191)
.+++-|=..| .|.|+|. . +.+..|.+.|..+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~-~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGD-P-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEES-S-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcC-H-HHHHHHHHHHHHH
Confidence 4555555566 9999998 3 6789998877654
No 215
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=20.92 E-value=72 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=19.3
Q ss_pred cCCccccccCCCceeEEEecCCeEEEEEeecc
Q 029591 128 HGAFSSYEPELFPGLIYRMKQPKIVLLIFVSG 159 (191)
Q Consensus 128 ~~~~~~YePe~fpgli~r~~~~~~t~lIF~sG 159 (191)
++....|||.. .+-|++. ...+|+|.||
T Consensus 62 Fgs~vthe~~~--fiyF~~g--~~~iLlfKtg 89 (89)
T 3rjs_A 62 FGSYVTHETHH--FIYFYIG--QVAVLLFKSG 89 (89)
T ss_dssp CCCCCCEEEEE--EEEEEET--TEEEEEEEEC
T ss_pred eeEEEEEcCCc--EEEEEEC--CEEEEEEecC
Confidence 44567888775 3445553 4789999998
No 216
>2noc_A Putative periplasmic protein; GFT STR106, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella choleraesuis} SCOP: d.230.6.1
Probab=20.77 E-value=55 Score=23.25 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=20.7
Q ss_pred ecceEEEeccCCHHHHHHHHHHHHH
Q 029591 157 VSGKIVITGAKVRDETYTAFENIYP 181 (191)
Q Consensus 157 ~sGkivitGaks~~~~~~a~~~i~~ 181 (191)
+-|.|+++|..+++|+++++..-..
T Consensus 39 ~iGtISvsg~~s~~da~~~La~kAd 63 (99)
T 2noc_A 39 KIGTISTTGEMSPLDAREDLIKKAD 63 (99)
T ss_dssp EEEEEECCSCCCHHHHHHHHHHHHH
T ss_pred eeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999876543
No 217
>1xhk_A Putative protease LA homolog; LON protease, ATP dependent, catalytic DYAD, hydrolase; HET: MES; 1.90A {Methanocaldococcus jannaschii} SCOP: d.14.1.10
Probab=20.57 E-value=1.1e+02 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.6
Q ss_pred ceEEEeccCCHHHHHHHHHHHHHHHHH
Q 029591 68 GKMVCTGAKSEQQSKLAARKYARIIQK 94 (191)
Q Consensus 68 GKivitGaks~e~a~~a~~~i~~~l~~ 94 (191)
|+...|| +..+++.+++...|++
T Consensus 39 g~~~~tG----~~~res~~~~~a~l~~ 61 (187)
T 1xhk_A 39 HLLNISG----DIAKHSITLASALSKK 61 (187)
T ss_dssp EEESSCH----HHHHHHHHHHHHHHHH
T ss_pred CceEEec----HHHHHHHHHHHHHHhh
Confidence 7888888 6778888888888887
No 218
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=20.54 E-value=1.3e+02 Score=20.90 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=21.9
Q ss_pred EEEEEeecceEE--EeccCCHHHHHHHHHHH
Q 029591 151 IVLLIFVSGKIV--ITGAKVRDETYTAFENI 179 (191)
Q Consensus 151 ~t~lIF~sGkiv--itGaks~~~~~~a~~~i 179 (191)
.+++|-.+|+|+ ..|..+.+++.+.++..
T Consensus 112 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~ 142 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAGRAGREALLDALLLA 142 (154)
T ss_dssp EEEEECTTSEEEEEEESBCCHHHHHHHHHHT
T ss_pred EEEEECCCCCEEEEEcCCCCHHHHHHHHHhc
Confidence 456777899986 67888888888877653
No 219
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=20.39 E-value=1.6e+02 Score=22.58 Aligned_cols=42 Identities=14% Similarity=0.258 Sum_probs=29.2
Q ss_pred cCCceEEEEecCce-EEEeccCC------HHHHHHHHHHHHHHHHHcCC
Q 029591 56 REPKTTALIFASGK-MVCTGAKS------EQQSKLAARKYARIIQKLGF 97 (191)
Q Consensus 56 ~~P~~t~lIf~SGK-ivitGaks------~e~a~~a~~~i~~~l~~~g~ 97 (191)
+.++.-+.|..++. .++.|.-. ..++..++.++++-|.+.|+
T Consensus 118 kK~~~Gv~i~KT~~~aiVI~~y~e~~~~~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 118 ARSKGGAHLIKTPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp EETTEEEEEEECTTSEEEEEEEEGGGTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCceEEEEEeCCCEEEEEEccCCCccCHHHHHHHHHHHHHHHHHcCC
Confidence 34455566777777 44444433 34899999999999998875
No 220
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=20.12 E-value=1.8e+02 Score=18.54 Aligned_cols=31 Identities=6% Similarity=0.027 Sum_probs=21.9
Q ss_pred CCceEEEEecCceEEEecc--CCHHHHHHHHHH
Q 029591 57 EPKTTALIFASGKMVCTGA--KSEQQSKLAARK 87 (191)
Q Consensus 57 ~P~~t~lIf~SGKivitGa--ks~e~a~~a~~~ 87 (191)
+|.-++.++-+|+...+|. +|..+|+..+.+
T Consensus 33 ~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~ 65 (73)
T 3adg_A 33 KSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 65 (73)
T ss_dssp SCEEEEEEEETTEEEECCSCBSSHHHHHHHHHH
T ss_pred CCeEEEEEEECCEEEEeeeccCCHHHHHHHHHH
Confidence 4556788888998887774 577777754443
Done!