Query 029592
Match_columns 191
No_of_seqs 113 out of 1205
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 15:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 6.1E-34 1.3E-38 223.9 5.8 153 4-166 1-170 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.2E-34 4.8E-39 194.0 2.7 73 5-77 1-73 (77)
3 smart00432 MADS MADS domain. 100.0 4.8E-31 1E-35 168.1 2.9 59 5-63 1-59 (59)
4 cd00266 MADS_SRF_like SRF-like 100.0 2.9E-31 6.2E-36 181.4 1.5 76 5-80 1-77 (83)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 5.2E-30 1.1E-34 163.4 2.7 59 5-63 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 6.6E-28 1.4E-32 148.8 -3.6 51 12-62 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 2.4E-20 5.3E-25 150.9 2.3 79 2-80 60-147 (338)
8 COG5068 ARG80 Regulator of arg 99.4 5E-14 1.1E-18 119.1 2.5 69 3-71 80-148 (412)
9 PF01486 K-box: K-box region; 98.5 6.9E-07 1.5E-11 63.0 8.3 63 101-171 14-76 (100)
10 PF06698 DUF1192: Protein of u 82.0 4.5 9.8E-05 25.6 4.6 35 132-166 12-46 (59)
11 PF07106 TBPIP: Tat binding pr 79.3 17 0.00037 27.6 8.1 66 93-170 73-138 (169)
12 PF10584 Proteasome_A_N: Prote 78.4 0.44 9.5E-06 24.3 -0.7 13 47-59 4-16 (23)
13 KOG4252 GTP-binding protein [S 74.2 18 0.00039 28.4 6.8 27 42-74 91-117 (246)
14 PF07820 TraC: TraC-like prote 71.5 27 0.00058 24.1 6.4 19 94-112 4-22 (92)
15 PRK04098 sec-independent trans 67.3 2.1 4.5E-05 32.6 0.4 26 141-166 81-106 (158)
16 PF15079 DUF4546: Domain of un 65.6 52 0.0011 25.4 7.5 65 93-174 48-112 (205)
17 PF05852 DUF848: Gammaherpesvi 65.6 50 0.0011 24.8 7.4 37 138-174 83-119 (146)
18 KOG4302 Microtubule-associated 65.0 81 0.0017 29.6 10.1 74 94-169 112-185 (660)
19 PF14193 DUF4315: Domain of un 64.6 34 0.00074 23.1 5.8 17 139-155 46-62 (83)
20 KOG0804 Cytoplasmic Zn-finger 64.2 58 0.0013 29.1 8.5 30 91-120 381-410 (493)
21 PF07106 TBPIP: Tat binding pr 60.3 72 0.0016 24.1 8.8 27 140-166 141-167 (169)
22 PRK01919 tatB sec-independent 60.1 37 0.0008 26.1 5.9 12 46-58 15-26 (169)
23 cd00187 TOP4c DNA Topoisomeras 59.3 66 0.0014 28.7 8.3 60 10-75 257-327 (445)
24 PF00846 Hanta_nucleocap: Hant 58.1 30 0.00065 30.2 5.7 81 93-184 3-83 (428)
25 PF05812 Herpes_BLRF2: Herpesv 56.3 74 0.0016 23.0 7.6 56 101-160 5-60 (118)
26 PF04521 Viral_P18: ssRNA posi 53.9 15 0.00032 26.6 2.8 24 21-44 4-27 (120)
27 PF06729 CENP-R: Kinetochore c 53.2 91 0.002 23.1 9.3 49 92-143 59-107 (139)
28 PF09403 FadA: Adhesion protei 51.9 92 0.002 22.8 7.5 23 144-166 89-111 (126)
29 COG3883 Uncharacterized protei 51.2 1.4E+02 0.0031 24.7 8.6 27 143-169 79-105 (265)
30 PF09941 DUF2173: Uncharacteri 49.3 13 0.00028 26.5 1.9 26 34-60 2-27 (108)
31 TIGR02231 conserved hypothetic 49.2 2E+02 0.0044 25.9 10.2 66 92-159 71-142 (525)
32 PF11460 DUF3007: Protein of u 49.0 31 0.00068 24.3 3.7 18 137-154 86-103 (104)
33 PF15372 DUF4600: Domain of un 48.6 1.1E+02 0.0023 22.6 9.0 28 138-165 48-75 (129)
34 PRK00736 hypothetical protein; 48.4 72 0.0016 20.5 5.3 33 88-120 15-47 (68)
35 PRK04325 hypothetical protein; 46.7 81 0.0018 20.7 5.3 34 87-120 18-51 (74)
36 PF05549 Allexi_40kDa: Allexiv 46.1 1.7E+02 0.0037 24.2 10.8 37 138-174 108-144 (271)
37 PRK00295 hypothetical protein; 45.7 80 0.0017 20.3 5.3 34 87-120 14-47 (68)
38 COG4575 ElaB Uncharacterized c 45.0 1.1E+02 0.0024 21.6 7.4 29 139-167 32-60 (104)
39 PF14282 FlxA: FlxA-like prote 44.2 1.1E+02 0.0024 21.4 8.1 32 139-170 42-73 (106)
40 KOG3048 Molecular chaperone Pr 43.7 61 0.0013 24.3 4.7 34 136-169 8-41 (153)
41 PLN03230 acetyl-coenzyme A car 43.5 2E+02 0.0044 25.6 8.6 26 55-80 37-72 (431)
42 PF04102 SlyX: SlyX; InterPro 42.8 88 0.0019 20.1 4.9 34 87-120 13-46 (69)
43 PF04977 DivIC: Septum formati 42.8 77 0.0017 20.3 4.8 27 94-120 19-45 (80)
44 PF00843 Arena_nucleocap: Aren 42.6 30 0.00065 30.8 3.4 26 137-162 87-112 (533)
45 PF00804 Syntaxin: Syntaxin; 42.6 1E+02 0.0022 20.5 6.2 68 96-170 4-71 (103)
46 PF10491 Nrf1_DNA-bind: NLS-bi 42.5 15 0.00033 29.1 1.5 39 35-73 45-86 (214)
47 PF06005 DUF904: Protein of un 42.4 96 0.0021 20.3 9.1 18 151-168 49-66 (72)
48 smart00787 Spc7 Spc7 kinetocho 42.4 2.1E+02 0.0045 24.3 8.4 32 136-167 196-227 (312)
49 PHA02592 52 DNA topisomerase I 42.1 1.7E+02 0.0037 26.1 8.1 41 30-75 286-326 (439)
50 PRK04406 hypothetical protein; 42.0 1E+02 0.0022 20.3 5.3 33 88-120 21-53 (75)
51 PLN03229 acetyl-coenzyme A car 41.8 2.1E+02 0.0046 27.4 8.9 19 46-64 50-68 (762)
52 PRK10803 tol-pal system protei 41.2 18 0.00039 29.7 1.8 34 38-72 12-45 (263)
53 PRK13729 conjugal transfer pil 41.2 2E+02 0.0044 25.9 8.3 25 92-116 69-93 (475)
54 PRK00846 hypothetical protein; 40.6 1.1E+02 0.0024 20.4 5.3 33 88-120 23-55 (77)
55 PHA02734 coat protein; Provisi 40.4 74 0.0016 23.3 4.6 43 149-191 51-100 (149)
56 PRK02119 hypothetical protein; 40.3 1E+02 0.0023 20.1 5.3 33 88-120 19-51 (73)
57 PF09151 DUF1936: Domain of un 40.2 30 0.00065 18.8 2.0 27 38-64 3-31 (36)
58 PHA03155 hypothetical protein; 39.9 1.4E+02 0.003 21.4 8.0 51 101-159 10-60 (115)
59 TIGR03752 conj_TIGR03752 integ 39.6 2.9E+02 0.0063 25.0 10.2 29 92-120 66-94 (472)
60 PHA00327 minor capsid protein 38.2 93 0.002 23.9 5.0 27 93-119 109-135 (187)
61 PHA03162 hypothetical protein; 37.8 1.7E+02 0.0036 21.7 7.9 55 101-159 15-69 (135)
62 COG3883 Uncharacterized protei 37.7 2.4E+02 0.0051 23.4 8.9 31 144-174 87-117 (265)
63 PF01166 TSC22: TSC-22/dip/bun 37.6 1.1E+02 0.0023 19.3 4.6 27 94-120 16-42 (59)
64 PF09278 MerR-DNA-bind: MerR, 36.8 98 0.0021 19.0 4.4 24 146-169 34-57 (65)
65 PRK04654 sec-independent trans 36.8 94 0.002 24.9 5.1 12 46-58 15-26 (214)
66 TIGR03007 pepcterm_ChnLen poly 36.4 3.1E+02 0.0067 24.4 9.5 90 65-169 140-232 (498)
67 PRK02793 phi X174 lysis protei 35.8 1.2E+02 0.0027 19.6 5.3 33 88-120 18-50 (72)
68 PF13252 DUF4043: Protein of u 34.9 22 0.00049 30.5 1.5 29 35-63 271-299 (341)
69 KOG0184 20S proteasome, regula 34.9 22 0.00048 28.6 1.3 22 39-60 3-24 (254)
70 cd00468 HIT_like HIT family: H 34.8 88 0.0019 20.1 4.2 26 136-161 30-55 (86)
71 KOG0432 Valyl-tRNA synthetase 34.3 1.3E+02 0.0027 29.5 6.3 17 34-50 881-897 (995)
72 KOG4445 Uncharacterized conser 34.3 1.4E+02 0.0031 25.3 6.0 69 31-118 100-177 (368)
73 PF06005 DUF904: Protein of un 34.0 1.4E+02 0.0029 19.6 8.8 29 92-120 18-46 (72)
74 PRK04863 mukB cell division pr 33.6 4.3E+02 0.0094 27.6 10.3 31 137-167 431-461 (1486)
75 PRK00888 ftsB cell division pr 33.3 1.4E+02 0.003 20.9 5.1 27 94-120 29-55 (105)
76 PF10458 Val_tRNA-synt_C: Valy 33.2 1.3E+02 0.0028 19.0 5.3 23 98-120 3-25 (66)
77 KOG0861 SNARE protein YKT6, sy 31.9 97 0.0021 24.2 4.3 14 63-76 121-134 (198)
78 PF08317 Spc7: Spc7 kinetochor 31.0 3.3E+02 0.0071 23.0 9.1 32 136-167 201-232 (325)
79 PF13082 DUF3931: Protein of u 30.8 29 0.00063 21.3 1.1 38 7-44 6-45 (66)
80 PF01502 PRA-CH: Phosphoribosy 30.8 38 0.00082 22.5 1.7 37 20-56 17-63 (75)
81 COG4917 EutP Ethanolamine util 30.2 34 0.00074 25.4 1.6 23 38-60 59-81 (148)
82 COG5000 NtrY Signal transducti 29.3 33 0.00072 31.9 1.7 21 39-59 374-394 (712)
83 PRK14127 cell division protein 28.9 2.1E+02 0.0046 20.3 5.4 30 92-121 30-59 (109)
84 PF06717 DUF1202: Protein of u 28.4 3.3E+02 0.0071 23.0 7.1 49 92-141 138-186 (308)
85 PF05700 BCAS2: Breast carcino 28.2 3.1E+02 0.0066 21.8 8.0 67 93-169 98-164 (221)
86 PF05957 DUF883: Bacterial pro 28.0 1.9E+02 0.0042 19.4 5.6 25 142-166 25-49 (94)
87 PRK09822 lipopolysaccharide co 27.9 29 0.00062 28.3 0.9 40 22-62 118-160 (269)
88 COG4831 Roadblock/LC7 domain [ 27.8 59 0.0013 22.7 2.3 29 34-63 4-32 (109)
89 PRK14626 hypothetical protein; 27.6 58 0.0013 23.2 2.4 75 94-171 7-92 (110)
90 cd04494 BRCA2DBD_OB2 BRCA2DBD_ 27.4 3.3E+02 0.0071 22.4 6.9 31 140-170 117-151 (251)
91 COG1938 Archaeal enzymes of AT 27.1 1.3E+02 0.0027 24.7 4.5 25 95-119 207-231 (244)
92 PF13540 RCC1_2: Regulator of 26.7 40 0.00087 17.7 1.1 25 39-64 3-27 (30)
93 KOG2662 Magnesium transporters 26.6 3.6E+02 0.0079 23.8 7.4 25 143-167 296-320 (414)
94 KOG0183 20S proteasome, regula 26.6 38 0.00082 27.2 1.3 16 44-59 4-19 (249)
95 PF12958 DUF3847: Protein of u 26.5 2.1E+02 0.0046 19.4 7.0 19 136-154 58-76 (86)
96 KOG3838 Mannose lectin ERGIC-5 26.2 4.6E+02 0.0099 23.3 7.8 37 138-174 313-352 (497)
97 PF06937 EURL: EURL protein; 25.8 92 0.002 25.9 3.5 36 136-171 214-249 (285)
98 PF07438 DUF1514: Protein of u 25.5 1.9E+02 0.0041 18.6 4.1 43 103-160 22-64 (66)
99 COG5509 Uncharacterized small 25.2 1.8E+02 0.0038 18.5 3.9 23 93-115 26-48 (65)
100 TIGR02338 gimC_beta prefoldin, 24.8 2.5E+02 0.0053 19.6 6.2 12 63-74 3-14 (110)
101 PF04873 EIN3: Ethylene insens 24.8 24 0.00053 30.4 0.0 43 24-66 49-92 (354)
102 PF14263 DUF4354: Domain of un 24.6 23 0.0005 25.9 -0.2 40 15-59 42-81 (124)
103 PF10224 DUF2205: Predicted co 24.6 2.2E+02 0.0049 19.0 4.8 13 97-109 21-33 (80)
104 COG4888 Uncharacterized Zn rib 24.1 95 0.0021 21.8 2.8 66 4-72 1-77 (104)
105 PF07676 PD40: WD40-like Beta 24.0 55 0.0012 17.8 1.4 18 45-62 10-27 (39)
106 PHA03161 hypothetical protein; 24.0 3.2E+02 0.007 20.6 7.0 34 138-171 83-116 (150)
107 PRK11637 AmiB activator; Provi 23.7 5E+02 0.011 22.7 10.4 32 143-174 109-140 (428)
108 PF14728 PHTB1_C: PTHB1 C-term 23.4 4.1E+02 0.0089 23.2 7.3 37 39-75 135-179 (377)
109 TIGR01916 F420_cofE F420-0:gam 23.3 66 0.0014 26.3 2.2 28 37-64 134-161 (243)
110 PF14257 DUF4349: Domain of un 23.3 4E+02 0.0087 21.5 7.6 58 94-166 127-184 (262)
111 PF06020 Roughex: Drosophila r 23.2 39 0.00084 28.4 0.9 15 39-53 183-197 (334)
112 KOG4098 Molecular chaperone Pr 23.2 3.2E+02 0.0069 20.3 7.9 47 59-120 11-57 (140)
113 TIGR03545 conserved hypothetic 23.1 2.6E+02 0.0057 25.7 6.3 28 31-59 91-120 (555)
114 PRK00064 recF recombination pr 22.8 3.8E+02 0.0082 22.9 7.0 27 48-74 114-141 (361)
115 PRK13848 conjugal transfer pro 22.7 2.7E+02 0.0058 19.3 4.9 16 96-111 7-22 (98)
116 PF08796 DUF1797: Protein of u 22.7 59 0.0013 21.1 1.5 19 42-60 24-42 (67)
117 PF14009 DUF4228: Domain of un 22.5 73 0.0016 23.7 2.3 34 42-75 12-46 (181)
118 PF11944 DUF3461: Protein of u 22.5 1.2E+02 0.0027 22.0 3.2 25 143-167 101-125 (125)
119 PF03250 Tropomodulin: Tropomo 22.2 60 0.0013 24.4 1.6 18 138-155 21-38 (147)
120 PF04697 Pinin_SDK_N: pinin/SD 22.2 1.3E+02 0.0028 22.1 3.3 35 103-145 7-41 (134)
121 TIGR03017 EpsF chain length de 22.2 4.6E+02 0.01 22.8 7.5 50 65-120 150-199 (444)
122 cd02980 TRX_Fd_family Thioredo 22.0 56 0.0012 20.7 1.4 29 42-71 47-76 (77)
123 PF06156 DUF972: Protein of un 22.0 2.8E+02 0.006 19.6 4.9 28 93-120 16-43 (107)
124 PF07960 CBP4: CBP4; InterPro 21.8 53 0.0011 24.1 1.3 26 45-72 15-40 (128)
125 PF11232 Med25: Mediator compl 21.6 72 0.0016 24.2 2.0 19 40-58 109-127 (152)
126 PF13870 DUF4201: Domain of un 21.5 3.6E+02 0.0079 20.3 9.6 62 92-169 6-67 (177)
127 PF11800 RP-C_C: Replication p 21.5 3.1E+02 0.0066 21.5 5.7 30 140-169 20-49 (207)
128 PF14916 CCDC92: Coiled-coil d 21.1 1.8E+02 0.0039 18.4 3.4 28 92-119 10-41 (60)
129 KOG4603 TBP-1 interacting prot 21.1 4.1E+02 0.0088 20.7 8.2 30 136-165 144-173 (201)
130 TIGR02420 dksA RNA polymerase- 20.9 2.5E+02 0.0054 19.6 4.6 30 141-170 1-30 (110)
131 COG2433 Uncharacterized conser 20.9 7.1E+02 0.015 23.4 9.3 28 93-120 430-457 (652)
132 PF03961 DUF342: Protein of un 20.8 5.9E+02 0.013 22.5 8.2 23 97-119 332-354 (451)
133 COG5179 TAF1 Transcription ini 20.6 1.4E+02 0.003 28.1 3.9 44 28-72 445-488 (968)
134 PRK10132 hypothetical protein; 20.5 3.2E+02 0.0069 19.3 7.2 27 139-165 36-62 (108)
135 COG0139 HisI Phosphoribosyl-AM 20.4 79 0.0017 22.6 1.8 38 19-56 48-95 (111)
136 PF07334 IFP_35_N: Interferon- 20.4 2.7E+02 0.0059 18.5 4.3 23 95-117 3-25 (76)
137 PF10226 DUF2216: Uncharacteri 20.3 4.4E+02 0.0095 20.8 8.5 52 65-120 18-69 (195)
138 PF11853 DUF3373: Protein of u 20.0 1.2E+02 0.0026 27.5 3.3 20 100-119 32-51 (489)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=6.1e-34 Score=223.92 Aligned_cols=153 Identities=27% Similarity=0.371 Sum_probs=105.0
Q ss_pred CCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCC--ChhhhhhhccCCCCCCC
Q 029592 4 MGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPG--DEPVITNLARTGNPDPG 81 (191)
Q Consensus 4 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Ps--v~~Vi~ry~~~~~~~~~ 81 (191)
|||+||+|++|+|++.|+|||+|||+||||||+||||||||+||+|||||+|++|.|++|+ +++|+++|...+..+..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 8999999999999999999999999999999999999999999999999999999999998 99999999887655443
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhhhhhhhhccccCCCCCCCCH-HHH
Q 029592 82 SYQRTLADHEATVQALNKEYHDLLEQLEA--------------EKKRGKILQKRKMMNQQSYCRHLWETPVDELNL-EEL 146 (191)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~--------------~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~-eeL 146 (191)
+ .......+.... . +..+....+. .+.....++. .....+...+.++.+++. .+|
T Consensus 81 ~---~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~l~~l~~~~~l 150 (195)
T KOG0014|consen 81 K---KRVNLESFLRNK-K-LTELVEEEEKEELKLQLKKSLESSLKVDPEDLEL-----LELEQRKLTGEDLQSLSSLNEL 150 (195)
T ss_pred c---cccchhhHhhhh-h-hhcccchhhhhhccchhhhhhhhhhhcchhhhhh-----hHHHHHHHhccccccCCHHHHh
Confidence 2 111111111101 0 1111111111 1111111110 001244556678888888 888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029592 147 LTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 147 ~~l~~~Le~~l~~v~~r~~~ 166 (191)
..++..++..+..++.....
T Consensus 151 ~~~~~~l~~~~~~~~~~~~~ 170 (195)
T KOG0014|consen 151 NSLESQLESSLHNSRSSKSK 170 (195)
T ss_pred cchhhHHHHhhcCCCCCCCc
Confidence 88888888777665554433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=2.2e-34 Score=193.97 Aligned_cols=73 Identities=36% Similarity=0.573 Sum_probs=71.0
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccCCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLARTGN 77 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~~~ 77 (191)
||+||+|++|+|+.+|++||+||++||||||+|||+||||+||+|||||+|++|+|+||++++||+||...+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999988754
No 3
>smart00432 MADS MADS domain.
Probab=99.96 E-value=4.8e-31 Score=168.06 Aligned_cols=59 Identities=42% Similarity=0.722 Sum_probs=58.2
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHP 63 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~P 63 (191)
||+||+|++|+|++.|++||+||++||||||+||||||||+||+|||||+|++|.|+||
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 4
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=2.9e-31 Score=181.39 Aligned_cols=76 Identities=36% Similarity=0.522 Sum_probs=71.3
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCC-ChhhhhhhccCCCCCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPG-DEPVITNLARTGNPDP 80 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Ps-v~~Vi~ry~~~~~~~~ 80 (191)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++ +++++++|...+..++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 77 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER 77 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence 799999999999999999999999999999999999999999999999999999988877 9999999988765443
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=5.2e-30 Score=163.40 Aligned_cols=59 Identities=41% Similarity=0.639 Sum_probs=57.4
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHP 63 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~P 63 (191)
||+||+|++|+|+..|++||+||++||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999998775
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.92 E-value=6.6e-28 Score=148.84 Aligned_cols=51 Identities=37% Similarity=0.664 Sum_probs=46.3
Q ss_pred eecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCC
Q 029592 12 KMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAH 62 (191)
Q Consensus 12 k~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~ 62 (191)
|+|+|++.|++||+||+.||||||+|||+||||+||+|||||+|++|+|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999998864
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.79 E-value=2.4e-20 Score=150.86 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=70.2
Q ss_pred CCCCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCC---------hhhhhhh
Q 029592 2 TGMGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGD---------EPVITNL 72 (191)
Q Consensus 2 ~~mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv---------~~Vi~ry 72 (191)
++-||+||+|++|+|+..|.+||+|||.||||||+|||||.|.+|-++|.|.+|-+|+|+.|.. +++|...
T Consensus 60 ~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~c 139 (338)
T KOG0015|consen 60 KTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQAC 139 (338)
T ss_pred cccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999874 4566666
Q ss_pred ccCCCCCC
Q 029592 73 ARTGNPDP 80 (191)
Q Consensus 73 ~~~~~~~~ 80 (191)
.+.+..+.
T Consensus 140 Ln~pd~~~ 147 (338)
T KOG0015|consen 140 LNAPDTPP 147 (338)
T ss_pred hcCCCCCC
Confidence 66665543
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.42 E-value=5e-14 Score=119.10 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=64.1
Q ss_pred CCCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhh
Q 029592 3 GMGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITN 71 (191)
Q Consensus 3 ~mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~r 71 (191)
.|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.++.|+.|..+.|+.-
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999875555443
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.53 E-value=6.9e-07 Score=63.00 Aligned_cols=63 Identities=22% Similarity=0.333 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029592 101 YHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQT 171 (191)
Q Consensus 101 ~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~ 171 (191)
+..+..++..++.+++.|+. ..+++.|+++++|+++||..|+..|+..+..|+.|+.+++.+.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~--------~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~ 76 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQK--------ELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 33444444455555555554 6678889999999999999999999999999999999988764
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=81.95 E-value=4.5 Score=25.56 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=29.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 132 HLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 132 ~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
+.-|.+|+.||++||.+-...|+.-+..++.-+..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999888887766654
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.34 E-value=17 Score=27.57 Aligned_cols=66 Identities=26% Similarity=0.259 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
.+..+..++..|++++..++.....++. ++. .=...++.+||......|+.-...+..|+..|...
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~--eL~----------~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEA--ELA----------SLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH----------HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777788888888888777777765 121 11245789999999999999999999999998763
No 12
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=78.42 E-value=0.44 Score=24.27 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=10.1
Q ss_pred eEEeecCCCCccc
Q 029592 47 TFFIFFPAGKAIS 59 (191)
Q Consensus 47 a~vvfSp~gk~~~ 59 (191)
.+.+|||+|+++-
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4568999999864
No 13
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=74.16 E-value=18 Score=28.45 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=19.0
Q ss_pred cCCceeEEeecCCCCccccCCCCChhhhhhhcc
Q 029592 42 CALETTFFIFFPAGKAISFAHPGDEPVITNLAR 74 (191)
Q Consensus 42 C~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~ 74 (191)
-||.+|++|||.++.. + .+.+++=|..
T Consensus 91 rgaqa~vLVFSTTDr~-S-----Fea~~~w~~k 117 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRY-S-----FEATLEWYNK 117 (246)
T ss_pred ccccceEEEEecccHH-H-----HHHHHHHHHH
Confidence 4899999999987643 3 4566666633
No 14
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=71.47 E-value=27 Score=24.10 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEK 112 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k 112 (191)
+..+..++.+|++++....
T Consensus 4 ~s~I~~eIekLqe~lk~~e 22 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAE 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456777777777776543
No 15
>PRK04098 sec-independent translocase; Provisional
Probab=67.29 E-value=2.1 Score=32.58 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 141 LNLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 141 Ls~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
++.++|.++...+......+.+-...
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~~ 106 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQD 106 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHhh
Confidence 77888888876666666555555544
No 16
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=65.59 E-value=52 Score=25.38 Aligned_cols=65 Identities=11% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTD 172 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~ 172 (191)
..++|..++.+.+++|..- .+.+. ... +|=+-+.+-|.+|.+.+-+..+...++++-|+..+.
T Consensus 48 ~T~eLkNeLREVREELkEK---meEIK---------QIK-----diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQK 110 (205)
T PF15079_consen 48 GTQELKNELREVREELKEK---MEEIK---------QIK-----DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQK 110 (205)
T ss_pred ccHHHHHHHHHHHHHHHHH---HHHHH---------HHH-----HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhccc
Confidence 3456666666666665432 22222 222 233345678899999999999999999999998775
Q ss_pred CC
Q 029592 173 AP 174 (191)
Q Consensus 173 ~~ 174 (191)
+.
T Consensus 111 nn 112 (205)
T PF15079_consen 111 NN 112 (205)
T ss_pred cc
Confidence 54
No 17
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=65.58 E-value=50 Score=24.81 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
++--.++++..|.+.+.++...|...++.+...+..+
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~~~~~ 119 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQSAGGSQ 119 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 6777899999999999999999999999987554444
No 18
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=64.98 E-value=81 Score=29.65 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
+..+..++.+-..++..+..+.+.+-. ++......-...-.+..+||.+.|.+|...|..+.+....|......
T Consensus 112 le~lr~qk~eR~~ef~el~~qie~l~~--~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~ 185 (660)
T KOG4302|consen 112 LEGLRKQKDERRAEFKELYHQIEKLCE--ELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLE 185 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544555544444444443 12211011122335778899999999999999999998888876544
No 19
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=64.62 E-value=34 Score=23.13 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 029592 139 DELNLEELLTLNAMIED 155 (191)
Q Consensus 139 ~~Ls~eeL~~l~~~Le~ 155 (191)
-.|++++|..|......
T Consensus 46 ~~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 46 MKMTPEELAAFLRAMKS 62 (83)
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 35899999988776654
No 20
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.19 E-value=58 Score=29.05 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 91 EATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 91 ~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+...+.++.++.++++++..+++.++.|.+
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777777777777777777665
No 21
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.30 E-value=72 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.104 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 140 ELNLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 140 ~Ls~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
..+.+|...+........+..+.|+.-
T Consensus 141 ~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 141 PVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999998888754
No 22
>PRK01919 tatB sec-independent translocase; Provisional
Probab=60.08 E-value=37 Score=26.14 Aligned_cols=12 Identities=8% Similarity=0.204 Sum_probs=9.3
Q ss_pred eeEEeecCCCCcc
Q 029592 46 TTFFIFFPAGKAI 58 (191)
Q Consensus 46 va~vvfSp~gk~~ 58 (191)
||+|||+| .+++
T Consensus 15 VALiV~GP-ekLP 26 (169)
T PRK01919 15 VALVVIGP-ERLP 26 (169)
T ss_pred HHHheeCc-hHhH
Confidence 78999999 4543
No 23
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=59.26 E-value=66 Score=28.70 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=37.4
Q ss_pred eeeecCCCCCcc-cccc---ccc-------ccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccC
Q 029592 10 QMKMNQGNDARQ-VVPP---IRR-------SGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLART 75 (191)
Q Consensus 10 ~ik~I~n~~~R~-~tf~---KRr-------~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~ 75 (191)
.|.-|.++++|. +.|- ||. ++|+|+.. |.+--. +-+++|.|+|++..| ++.++|+.|-..
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~-L~~s~~--~Nm~~~~~~g~p~~~---~l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTK-LQTTFG--INMVAFDPNGRPKKL---NLKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcC-Cceeee--eeEEEEecCCeeEEe---CHHHHHHHHHHH
Confidence 466777777773 4432 333 25564442 322222 277888999988776 788999999554
No 24
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=58.09 E-value=30 Score=30.20 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTD 172 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~ 172 (191)
.+++++.++.....||.-.+.+.+..+.. ...-.++++--++..-......|+.++..++..++.+...+.
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~---------~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~~k 73 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQ---------YEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAAGK 73 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45667777777777777665555544431 111113344446677777788888888888888888777654
Q ss_pred CCCcCCCCCCCC
Q 029592 173 APTEGSSVDPNG 184 (191)
Q Consensus 173 ~~~~~~~~~~~~ 184 (191)
. ..-.++|+|
T Consensus 74 ~--~~~~~dptG 83 (428)
T PF00846_consen 74 Q--SAKPVDPTG 83 (428)
T ss_dssp H-----------
T ss_pred c--ccCCCCCCC
Confidence 3 345666666
No 25
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=56.34 E-value=74 Score=23.01 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029592 101 YHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKL 160 (191)
Q Consensus 101 ~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v 160 (191)
+++|.++|.+++-+|+.|..+ +..... .--..+..-|++.+=..+....-..+...
T Consensus 5 ~EeLaaeL~kLqmENk~LKkk--l~~~~~--p~~~p~~~~LTp~qKe~~I~s~~~~Lss~ 60 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKK--LRQSVG--PGPSPDDEVLTPAQKEAMITSAVSKLSSQ 60 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHTT-----S-TT--B--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHccCC--CCCCCCccccChHHHHHHHHHHHHHHHHH
Confidence 566777777777778777762 321111 11113455699999998888877777653
No 26
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=53.92 E-value=15 Score=26.57 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=18.5
Q ss_pred ccccccccccccccchhhccccCC
Q 029592 21 QVVPPIRRSGLFKKFSEVTTLCAL 44 (191)
Q Consensus 21 ~~tf~KRr~gL~KKa~ELs~LC~v 44 (191)
-.+|+|+|..++++-.+-.+-|..
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~L 27 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCRL 27 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeecC
Confidence 457899999999998876664433
No 27
>PF06729 CENP-R: Kinetochore component, CENP-R; InterPro: IPR009601 This family consists of mammalian nuclear receptor co-activator NRIF3 proteins. NRIF3 exhibits a distinct receptor specificity in interacting with and potentiating the activity of only TRs and RXRs but not other examined nuclear receptors. NRIF3 as a coregulator that possesses both transactivation and transrepression domains and/or functions. Collectively, the NRIF3 family of coregulators may play dual roles in mediating both positive and negative regulatory effects on gene expression [].
Probab=53.16 E-value=91 Score=23.06 Aligned_cols=49 Identities=14% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNL 143 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~ 143 (191)
+.+-.|...+++-.+++-+..+.+..++. +......-.+.|.+...+.+
T Consensus 59 D~fm~L~SkvekS~eeime~~qnL~slQA---LeGsreLEnLiGvs~sSc~L 107 (139)
T PF06729_consen 59 DEFMVLLSKVEKSLEEIMEIRQNLSSLQA---LEGSRELENLIGVSCSSCDL 107 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccHHHHHHhccccchHHH
Confidence 34455667777776777666666666665 43333444455544444433
No 28
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=51.91 E-value=92 Score=22.77 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029592 144 EELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 144 eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
++-.+|....+..++.+...|..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~ 111 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAE 111 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777666654
No 29
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.22 E-value=1.4e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 143 LEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 143 ~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
-.++..|...|+.+...|.+|..-|-.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666554433
No 30
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=49.33 E-value=13 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.283 Sum_probs=20.8
Q ss_pred cchhhccccCCceeEEeecCCCCcccc
Q 029592 34 KFSEVTTLCALETTFFIFFPAGKAISF 60 (191)
Q Consensus 34 Ka~ELs~LC~v~va~vvfSp~gk~~~f 60 (191)
+..+|-.|-|| +|+..||++|++.+|
T Consensus 2 ~l~~Lm~lpGv-~AAg~Fs~~G~l~e~ 27 (108)
T PF09941_consen 2 KLDKLMKLPGV-VAAGEFSDDGKLVEY 27 (108)
T ss_pred cHHHhhcCCCe-EEEEEECCCCeEEee
Confidence 34678888888 667899999998875
No 31
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.16 E-value=2e+02 Score=25.92 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCC------CCCCCCHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWET------PVDELNLEELLTLNAMIEDLQEK 159 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~------~l~~Ls~eeL~~l~~~Le~~l~~ 159 (191)
..+..|..++.+++.++.....+...++..+..-+ ....-+.. ..+..+++++.++...+..-+..
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLE--DIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIER 142 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766666665332221 11111111 12345777777766555444433
No 32
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=49.00 E-value=31 Score=24.34 Aligned_cols=18 Identities=50% Similarity=0.584 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIE 154 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le 154 (191)
.++.|+++|+..|...++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 567899999999988876
No 33
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=48.59 E-value=1.1e+02 Score=22.56 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKHLA 165 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~ 165 (191)
.+.|+.+.|..+...|+.-...+...+.
T Consensus 48 ye~Ms~~~l~~llkqLEkeK~~Le~qlk 75 (129)
T PF15372_consen 48 YEQMSVESLNQLLKQLEKEKRSLENQLK 75 (129)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999998888766554
No 34
>PRK00736 hypothetical protein; Provisional
Probab=48.44 E-value=72 Score=20.53 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=22.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 88 ADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 88 ~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+.++..+..|+..+..-+.+|+.+.++.+.|..
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777776666666554
No 35
>PRK04325 hypothetical protein; Provisional
Probab=46.72 E-value=81 Score=20.66 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=22.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 87 LADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 87 ~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+.++..+..|+..+..-+.+++.++...+.|..
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777776666665544
No 36
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=46.13 E-value=1.7e+02 Score=24.16 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
.+..+..++..-...||..+..+..+++++.....+.
T Consensus 108 ~~~~~~~~~~~~l~~iet~L~~lh~kld~l~~~~~~~ 144 (271)
T PF05549_consen 108 ANTPSSSKLLKKLASIETSLESLHIKLDELISSLTSN 144 (271)
T ss_pred cCCccchhHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 3344444555555556666666667777776655433
No 37
>PRK00295 hypothetical protein; Provisional
Probab=45.74 E-value=80 Score=20.31 Aligned_cols=34 Identities=26% Similarity=0.177 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 87 LADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 87 ~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+.++..+..|+..+.+.+.+++.++...+.|..
T Consensus 14 la~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 14 QAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888777777777777766666654
No 38
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=44.98 E-value=1.1e+02 Score=21.63 Aligned_cols=29 Identities=17% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 139 DELNLEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 139 ~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
.+++-+++.++...++..++.++.|+...
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56888999999999999999999988664
No 39
>PF14282 FlxA: FlxA-like protein
Probab=44.24 E-value=1.1e+02 Score=21.44 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 139 DELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 139 ~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
.+|+.++-..-...|..-+..|...+.++..+
T Consensus 42 ~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 42 SDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788877777777777777777777766553
No 40
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=43.74 E-value=61 Score=24.33 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
-++..||+++|.+|...+|.-+.-+..-.+.|..
T Consensus 8 idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~ 41 (153)
T KOG3048|consen 8 IDLTKLSLEQLGALKKQFDQELNFLQDSLNALKG 41 (153)
T ss_pred CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999988888777766654
No 41
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=43.50 E-value=2e+02 Score=25.57 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=16.1
Q ss_pred CCccccCCCC------Ch----hhhhhhccCCCCCC
Q 029592 55 GKAISFAHPG------DE----PVITNLARTGNPDP 80 (191)
Q Consensus 55 gk~~~f~~Ps------v~----~Vi~ry~~~~~~~~ 80 (191)
+..+.|+||. +. ..+.+|+-......
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (431)
T PLN03230 37 RLEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPK 72 (431)
T ss_pred CCCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCC
Confidence 3448888875 22 47888866654433
No 42
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.83 E-value=88 Score=20.08 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=26.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 87 LADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 87 ~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+.++..+..|+..+...+.+++.++...+.|..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888888777777765
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.78 E-value=77 Score=20.26 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...+++++..++.+++.++.++..|+.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777765
No 44
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=42.59 E-value=30 Score=30.76 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQK 162 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~ 162 (191)
.+.+|+-+||.+|..-||+++++|..
T Consensus 87 kvG~LskdeLm~LasDLeKLk~Kv~r 112 (533)
T PF00843_consen 87 KVGDLSKDELMELASDLEKLKKKVQR 112 (533)
T ss_dssp EBTTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999998753
No 45
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=42.56 E-value=1e+02 Score=20.49 Aligned_cols=68 Identities=24% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 96 ALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
.+..++..+...+..++.....+.. ++. ..+...+-+.-.-++|..+...+-.....++.++..+-..
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~---l~~----~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRK---LHK----KILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655555554 221 1111111111234567777777777777788888776665
No 46
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=42.52 E-value=15 Score=29.14 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=29.3
Q ss_pred chhhccccCCceeEEeecCCC---CccccCCCCChhhhhhhc
Q 029592 35 FSEVTTLCALETTFFIFFPAG---KAISFAHPGDEPVITNLA 73 (191)
Q Consensus 35 a~ELs~LC~v~va~vvfSp~g---k~~~f~~Psv~~Vi~ry~ 73 (191)
..|++|=+|-++.++|.+|+. ....||.-..+.|+..|.
T Consensus 45 ~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~ 86 (214)
T PF10491_consen 45 IDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLK 86 (214)
T ss_pred HHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHH
Confidence 479999999999999999953 233456655677777764
No 47
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.42 E-value=96 Score=20.27 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029592 151 AMIEDLQEKLQKHLAERS 168 (191)
Q Consensus 151 ~~Le~~l~~v~~r~~~l~ 168 (191)
..|..-...+..|+..|+
T Consensus 49 ~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 49 EQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 48
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=42.35 E-value=2.1e+02 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
..+++++.++|..+...|......|......+
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999888888776666554
No 49
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=42.14 E-value=1.7e+02 Score=26.11 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=26.3
Q ss_pred cccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccC
Q 029592 30 GLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLART 75 (191)
Q Consensus 30 gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~ 75 (191)
+|+|+.. |.+- ..+-+++|+++|++..| .++.+||+.|-..
T Consensus 286 ~L~k~~~-L~~~--~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~ 326 (439)
T PHA02592 286 KIMKDFG-LIER--VSQNITVINENGKLKVY--ENAEDLIRDFVEI 326 (439)
T ss_pred HHHHhcC-chhe--eeeeEEEEecCCeeeec--CCHHHHHHHHHHH
Confidence 5565432 3222 24778899999987554 4578888888543
No 50
>PRK04406 hypothetical protein; Provisional
Probab=41.97 E-value=1e+02 Score=20.33 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=18.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 88 ADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 88 ~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+.++..+..|+..+...+.+++.++...+.|..
T Consensus 21 AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 21 AFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655555554433
No 51
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=41.83 E-value=2.1e+02 Score=27.37 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.8
Q ss_pred eeEEeecCCCCccccCCCC
Q 029592 46 TTFFIFFPAGKAISFAHPG 64 (191)
Q Consensus 46 va~vvfSp~gk~~~f~~Ps 64 (191)
+.++.---.|+-+.|+||.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~ 68 (762)
T PLN03229 50 LAVVAKIRKGKKHEYPWPA 68 (762)
T ss_pred eEEEeeeccccccCCCCCC
Confidence 4444444567888899975
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.25 E-value=18 Score=29.74 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=14.3
Q ss_pred hccccCCceeEEeecCCCCccccCCCCChhhhhhh
Q 029592 38 VTTLCALETTFFIFFPAGKAISFAHPGDEPVITNL 72 (191)
Q Consensus 38 Ls~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry 72 (191)
|+.|++|-+...++.|. .+...++++.++=+.+.
T Consensus 12 ~~~l~~~~~~~~~~a~a-~v~~~~~~~~~~r~~~l 45 (263)
T PRK10803 12 LSLLVGVAAPWAAFAQA-PISSVGSGSVEDRVTQL 45 (263)
T ss_pred HHHHHHHhhhHHHhcCC-cHHHcCCCchHHHHHHH
Confidence 45566543433334332 12222344555444444
No 53
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.18 E-value=2e+02 Score=25.95 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGK 116 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~ 116 (191)
+.+.+.+....+|+++|++++.+.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666667766654433
No 54
>PRK00846 hypothetical protein; Provisional
Probab=40.62 E-value=1.1e+02 Score=20.38 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=22.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 88 ADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 88 ~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+.++..+..|+..+...+.+++.++...+.+..
T Consensus 23 AfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 23 SFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777666665554
No 55
>PHA02734 coat protein; Provisional
Probab=40.44 E-value=74 Score=23.28 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC-------CcCCCCCCCCCccCCCC
Q 029592 149 LNAMIEDLQEKLQKHLAERSAQTDAP-------TEGSSVDPNGHEKEPGN 191 (191)
Q Consensus 149 l~~~Le~~l~~v~~r~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~ 191 (191)
+...+.+.++.|++-..-+...+.-+ +.+--+.|++++-+|+|
T Consensus 51 ~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpenappns~~~p~~ 100 (149)
T PHA02734 51 AKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPENAPPNSQAIPGE 100 (149)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCcccCCCcCCCCCHH
Confidence 34556667777887777766555444 67888899999999986
No 56
>PRK02119 hypothetical protein; Provisional
Probab=40.29 E-value=1e+02 Score=20.08 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 88 ADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 88 ~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+.++..+..|+..+.+-+.+++.++...+.|..
T Consensus 19 a~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 19 AFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777766666666666665555544
No 57
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=40.23 E-value=30 Score=18.84 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=17.6
Q ss_pred hccccCCceeEEeecCCCCc--cccCCCC
Q 029592 38 VTTLCALETTFFIFFPAGKA--ISFAHPG 64 (191)
Q Consensus 38 Ls~LC~v~va~vvfSp~gk~--~~f~~Ps 64 (191)
|+--|||-|-.-||...|.. |-.+.|.
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 56679999999999998854 4434453
No 58
>PHA03155 hypothetical protein; Provisional
Probab=39.89 E-value=1.4e+02 Score=21.44 Aligned_cols=51 Identities=20% Similarity=0.166 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029592 101 YHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEK 159 (191)
Q Consensus 101 ~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~ 159 (191)
.++|.++|.+++-+|+.|..+ +.. +. +.+-.-|+..+-..+....-..+..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkk--l~~-----~~-~p~d~~LT~~qKea~I~s~v~~Lt~ 60 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKK--LLQ-----HG-NPEDELLTPAQKDAIINSLVNKLTK 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHc-----cC-CCCccccCHHHHHHHHHHHHHHHHH
Confidence 445666666666677777652 221 11 1233459999998888887777764
No 59
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.57 E-value=2.9e+02 Score=24.95 Aligned_cols=29 Identities=38% Similarity=0.415 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
..+++++.++..+..+.+.++++|+.|++
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666654
No 60
>PHA00327 minor capsid protein
Probab=38.19 E-value=93 Score=23.88 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQ 119 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~ 119 (191)
.++.+-.++++++.+++.+++.++.++
T Consensus 109 ~v~~l~~~~~r~~aelQnL~~q~r~in 135 (187)
T PHA00327 109 AVQRLTYERKRMQAELQNLREQNRLIN 135 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677888888999998888887766
No 61
>PHA03162 hypothetical protein; Provisional
Probab=37.85 E-value=1.7e+02 Score=21.66 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029592 101 YHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEK 159 (191)
Q Consensus 101 ~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~ 159 (191)
.++|.++|.+++-+|+.|..+ +........+=+ -.-|+..+-..+....-..+..
T Consensus 15 mEeLaaeL~kLqmENK~LKkk--l~~~~~~~~~p~--d~~LTp~qKea~I~s~v~~Lts 69 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKK--IKEGTDDDPLPG--DPILTPAAKEAMIGAATAALTR 69 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhccCCCCCCC--CccCCHHHHHHHHHHHHHHHHH
Confidence 345556666666666666652 221111110111 2248999988888777766654
No 62
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.73 E-value=2.4e+02 Score=23.44 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029592 144 EELLTLNAMIEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 144 eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
.++..+...|.+-...+..|...+...+.+.
T Consensus 87 ~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t 117 (265)
T COG3883 87 KEIAELKENIVERQELLKKRARAMQVNGTAT 117 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 4677888888888888889998888887554
No 63
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=37.61 E-value=1.1e+02 Score=19.34 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+..|..+|.+|.++...++.+|..|+.
T Consensus 16 VevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 16 VEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566888888888888888888887775
No 64
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=36.82 E-value=98 Score=19.00 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 146 LLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 146 L~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
..+....++..+..|..+++.|..
T Consensus 34 ~~~~~~~l~~~~~~i~~~i~~L~~ 57 (65)
T PF09278_consen 34 CADRRALLEEKLEEIEEQIAELQA 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334447788888888888887653
No 65
>PRK04654 sec-independent translocase; Provisional
Probab=36.81 E-value=94 Score=24.86 Aligned_cols=12 Identities=8% Similarity=0.232 Sum_probs=8.7
Q ss_pred eeEEeecCCCCcc
Q 029592 46 TTFFIFFPAGKAI 58 (191)
Q Consensus 46 va~vvfSp~gk~~ 58 (191)
|++|||+| .++.
T Consensus 15 VALlV~GP-erLP 26 (214)
T PRK04654 15 VALVVLGP-ERLP 26 (214)
T ss_pred HHHHhcCc-hHHH
Confidence 68899999 4443
No 66
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=36.38 E-value=3.1e+02 Score=24.36 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=47.0
Q ss_pred ChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHH
Q 029592 65 DEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLE 144 (191)
Q Consensus 65 v~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~e 144 (191)
++.+++.|......... .......+++..++.+++.+++....+...-+. .......+-.+...+
T Consensus 140 ~n~l~~~yi~~~~~~~~------~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~---------~~~~~~~~~~~~~~~ 204 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKR------QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ---------ENGGILPDQEGDYYS 204 (498)
T ss_pred HHHHHHHHHHhhcccch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hCcccCccchhhHHH
Confidence 56777778654322111 112345677888888888888877665554433 111111122233456
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHh
Q 029592 145 ELLTLNAMIEDLQEK---LQKHLAERSA 169 (191)
Q Consensus 145 eL~~l~~~Le~~l~~---v~~r~~~l~~ 169 (191)
++.++...+...... +..+...+..
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655554433 3444444443
No 67
>PRK02793 phi X174 lysis protein; Provisional
Probab=35.77 E-value=1.2e+02 Score=19.64 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=21.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 88 ADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 88 ~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
++++..+..|+..+...+.+++.+....+.|..
T Consensus 18 afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 18 AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777766666666666665555544
No 68
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=34.94 E-value=22 Score=30.47 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=22.4
Q ss_pred chhhccccCCceeEEeecCCCCccccCCC
Q 029592 35 FSEVTTLCALETTFFIFFPAGKAISFAHP 63 (191)
Q Consensus 35 a~ELs~LC~v~va~vvfSp~gk~~~f~~P 63 (191)
+-.-+.|||+.++++.|+..+..-.|.|.
T Consensus 271 ~v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 271 AVARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred ceeeeeeechhheeeeeeccCCCcccccc
Confidence 34557899999999999986655566665
No 69
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=22 Score=28.65 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=17.7
Q ss_pred ccccCCceeEEeecCCCCcccc
Q 029592 39 TTLCALETTFFIFFPAGKAISF 60 (191)
Q Consensus 39 s~LC~v~va~vvfSp~gk~~~f 60 (191)
||=.|-+.|.-+|||+|..|..
T Consensus 3 sIGtGyDls~s~fSpdGrvfQv 24 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQV 24 (254)
T ss_pred cccccccccceeeCCCCceehH
Confidence 4556889999999999987653
No 70
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=34.75 E-value=88 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQ 161 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~ 161 (191)
.++.+|+.+++.++...+....+.+.
T Consensus 30 ~~~~~l~~~~~~~l~~~~~~~~~~l~ 55 (86)
T cd00468 30 ETLPDLDEALLADLVITAQRVAAELE 55 (86)
T ss_pred CChhHCCHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999888877776654
No 71
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=34.34 E-value=1.3e+02 Score=29.47 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=10.6
Q ss_pred cchhhccccCCceeEEe
Q 029592 34 KFSEVTTLCALETTFFI 50 (191)
Q Consensus 34 Ka~ELs~LC~v~va~vv 50 (191)
.+.+|++||..+.--|+
T Consensus 881 ~~~~i~~l~~~~~v~i~ 897 (995)
T KOG0432|consen 881 FLDEISTLTNLELVSIS 897 (995)
T ss_pred HHHHHHHhhccceeEec
Confidence 45778888866544333
No 72
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.33 E-value=1.4e+02 Score=25.33 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=38.8
Q ss_pred ccccchhhcccc-----CCceeEEeecCCCCccccCCCC---C-hhhhhhhccCCCCCCCCccccccchHHHHHHHHHHH
Q 029592 31 LFKKFSEVTTLC-----ALETTFFIFFPAGKAISFAHPG---D-EPVITNLARTGNPDPGSYQRTLADHEATVQALNKEY 101 (191)
Q Consensus 31 L~KKa~ELs~LC-----~v~va~vvfSp~gk~~~f~~Ps---v-~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (191)
||.+.+|+-|-- +.-||++.|-. +..|. ..++ + -.-+.||... -.+.|.+++
T Consensus 100 lie~~~e~LT~nn~p~gqCvICLygfa~-~~~ft-~T~C~Hy~H~~ClaRyl~~-----------------~~~~lrqe~ 160 (368)
T KOG4445|consen 100 LIEHCSEFLTENNHPNGQCVICLYGFAS-SPAFT-VTACDHYMHFACLARYLTE-----------------CLTGLRQEI 160 (368)
T ss_pred HHHHHHHHcccCCCCCCceEEEEEeecC-CCcee-eehhHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 455555554432 23467777765 33222 3344 2 2456777553 245577777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029592 102 HDLLEQLEAEKKRGKIL 118 (191)
Q Consensus 102 ~~l~~~l~~~k~~~~~l 118 (191)
.+++++++..++..+.+
T Consensus 161 q~~~~~~qh~~~~~eav 177 (368)
T KOG4445|consen 161 QDAQKERQHMKEQVEAV 177 (368)
T ss_pred HHHHHHHHHhhhhHhhh
Confidence 77777777766655554
No 73
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=34.05 E-value=1.4e+02 Score=19.56 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.++..|..++.+|+++...+...+..|+.
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444555555555544444444444444
No 74
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.63 E-value=4.3e+02 Score=27.60 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=24.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
.+.+||.++|......++..+.........+
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~el 461 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSL 461 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999988888888777766655543
No 75
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=33.33 E-value=1.4e+02 Score=20.95 Aligned_cols=27 Identities=15% Similarity=0.015 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...+++++..++.++++++.+|..|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455777788888888888877777776
No 76
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=33.19 E-value=1.3e+02 Score=19.00 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029592 98 NKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 98 ~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
..++.+|..+++++......++.
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555555
No 77
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.86 E-value=97 Score=24.16 Aligned_cols=14 Identities=7% Similarity=0.226 Sum_probs=6.9
Q ss_pred CCChhhhhhhccCC
Q 029592 63 PGDEPVITNLARTG 76 (191)
Q Consensus 63 Psv~~Vi~ry~~~~ 76 (191)
|-.+..|++|+++.
T Consensus 121 ~~L~~~l~kyqdP~ 134 (198)
T KOG0861|consen 121 PYLDTLLSKYQDPA 134 (198)
T ss_pred hhHHHHHHHhcChh
Confidence 33455555555543
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.03 E-value=3.3e+02 Score=23.01 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
..++.++.++|..+...|......|..+...+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888999999999999888888777655544
No 79
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=30.84 E-value=29 Score=21.31 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=29.0
Q ss_pred cceeeeecCCCCCcccccccccccccccchhhc--cccCC
Q 029592 7 KKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVT--TLCAL 44 (191)
Q Consensus 7 ~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs--~LC~v 44 (191)
+|-.+--|..+....-||+--+--.-.|.+|+| +|||-
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcge 45 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCGE 45 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEcc
Confidence 455666677788888888888888888999987 56663
No 80
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=30.77 E-value=38 Score=22.47 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=27.1
Q ss_pred cccc-ccccccccccc---------chhhccccCCceeEEeecCCCC
Q 029592 20 RQVV-PPIRRSGLFKK---------FSEVTTLCALETTFFIFFPAGK 56 (191)
Q Consensus 20 R~~t-f~KRr~gL~KK---------a~ELs~LC~v~va~vvfSp~gk 56 (191)
+.+| ||+-|++|..| +.|+.+-||-++=++..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3445 57777777665 5789999999999999989886
No 81
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=30.16 E-value=34 Score=25.37 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=18.9
Q ss_pred hccccCCceeEEeecCCCCcccc
Q 029592 38 VTTLCALETTFFIFFPAGKAISF 60 (191)
Q Consensus 38 Ls~LC~v~va~vvfSp~gk~~~f 60 (191)
+.++|||+|-++|-+.+++...|
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHhhccceeeeeecccCccccC
Confidence 57899999999999987765444
No 82
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=29.33 E-value=33 Score=31.92 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.4
Q ss_pred ccccCCceeEEeecCCCCccc
Q 029592 39 TTLCALETTFFIFFPAGKAIS 59 (191)
Q Consensus 39 s~LC~v~va~vvfSp~gk~~~ 59 (191)
++|.|+.+++|+|.++|..+.
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t 394 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITT 394 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEe
Confidence 599999999999999998876
No 83
>PRK14127 cell division protein GpsB; Provisional
Probab=28.89 E-value=2.1e+02 Score=20.32 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKR 121 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~ 121 (191)
.+++.....|+.+..++..+++++..++.+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQ 59 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666553
No 84
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=28.44 E-value=3.3e+02 Score=22.95 Aligned_cols=49 Identities=12% Similarity=0.205 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCC
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDEL 141 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~L 141 (191)
..+..+...+......+..++++...|+..+.- -.......||.+-++-
T Consensus 138 ~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~a-i~Kkid~yWgkda~gk 186 (308)
T PF06717_consen 138 YRFNQIEDEYNRKKNKIPGLNKQISALDKQIVA-INKKIDRYWGKDANGK 186 (308)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHhccCCCCCCC
Confidence 445555555555555555555555555542211 1125667899887774
No 85
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.17 E-value=3.1e+02 Score=21.80 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
.+..|..-+.....+++-..-+...|+- |.+ .+...|- ...+.|..+...++..+..++..+..+-.
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeL---l~~--~g~naW~-----~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLEL---LSK--YGENAWL-----IHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777788776666666654 333 2223342 34578888888888888888887776543
No 86
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=27.99 E-value=1.9e+02 Score=19.41 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 142 NLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 142 s~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
+-+...++...+...+..++.+...
T Consensus 25 ~~~~~~~~r~~~~~~~~~a~~~~~~ 49 (94)
T PF05957_consen 25 AGEKADEARDRAEEALDDARDRAED 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 87
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.95 E-value=29 Score=28.31 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.5
Q ss_pred cccccccccccccchhhccccCCc---eeEEeecCCCCccccCC
Q 029592 22 VVPPIRRSGLFKKFSEVTTLCALE---TTFFIFFPAGKAISFAH 62 (191)
Q Consensus 22 ~tf~KRr~gL~KKa~ELs~LC~v~---va~vvfSp~gk~~~f~~ 62 (191)
.-|++-+.|++||.. +..||+.+ ||-|.||+.+...-|++
T Consensus 118 ~~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 118 SFYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeee
Confidence 345666888998875 77888655 55567999888777766
No 88
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=27.79 E-value=59 Score=22.69 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=21.5
Q ss_pred cchhhccccCCceeEEeecCCCCccccCCC
Q 029592 34 KFSEVTTLCALETTFFIFFPAGKAISFAHP 63 (191)
Q Consensus 34 Ka~ELs~LC~v~va~vvfSp~gk~~~f~~P 63 (191)
|..||--+-|| +|.=.|||+|++.+|-.|
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 56677777777 455689999999887553
No 89
>PRK14626 hypothetical protein; Provisional
Probab=27.59 E-value=58 Score=23.17 Aligned_cols=75 Identities=15% Similarity=0.090 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hcc-ccC------C--CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSY--CRH-LWE------T--PVDELNLEELLTLNAMIEDLQEKLQK 162 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~--~~~-~~~------~--~l~~Ls~eeL~~l~~~Le~~l~~v~~ 162 (191)
+..+.++..++|+++++.+++.+..+- ...... ..- ..| - +.+-|+.+|...|++.|-...+....
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~~v---~g~sggG~VkV~~nG~~ev~~i~Id~~ll~~ed~e~LeDLI~aA~N~A~~ 83 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKEEI---VVEVGGGMVKVVSNGLGEIKDVEIDKSLLNEDEYEVLKDLLIAAFNEASR 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEE---EEEecCcEEEEEEECCccEEEEEECHHHcCcccHHHHHHHHHHHHHHHHH
Confidence 455666667777777766655554331 000000 000 011 1 12225556666666666666666655
Q ss_pred HHHHHHhcC
Q 029592 163 HLAERSAQT 171 (191)
Q Consensus 163 r~~~l~~~~ 171 (191)
++.+...+.
T Consensus 84 k~~~~~~e~ 92 (110)
T PRK14626 84 RSKEVMGEK 92 (110)
T ss_pred HHHHHHHHH
Confidence 555554444
No 90
>cd04494 BRCA2DBD_OB2 BRCA2DBD_OB2: A subfamily of OB folds corresponding to the second OB fold (OB2) of the 800-amino acid C-terminal ssDNA binding domain (DBD) of BRCA2 (breast cancer susceptibility gene 2) protein, called BRCA2DBD. BRCA2 participates in homologous recombination-mediated repair of double-strand DNA breaks. It stimulates the displacement of Replication protein A (RPA), the most abundant eukaryotic ssDNA binding protein. It also facilitates filament formation. Mutations that map throughout the BRCA2 protein are associated with breast cancer susceptibility. BRCA2 is a large nuclear protein and its most conserved region is the C-terminal BRCA2DBD. BRCA2DBD binds ssDNA in vitro, and is composed of five structural domains, three of which are OB folds (OB1, OB2, and OB3). BRCA2DBD OB2 and OB3 are arranged in tandem, and their mode of binding can be considered qualitatively similar to two OB folds of RPA1, DBD-A and DBD-B (the major DBDs of RPA).
Probab=27.43 E-value=3.3e+02 Score=22.43 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Q 029592 140 ELNLEELLTLNAMIEDL----QEKLQKHLAERSAQ 170 (191)
Q Consensus 140 ~Ls~eeL~~l~~~Le~~----l~~v~~r~~~l~~~ 170 (191)
.||.+++..|..+-... ...+++++.+-+..
T Consensus 117 ~lS~~Q~~~L~~y~~~~~~~kq~~lQ~~~~ka~~~ 151 (251)
T cd04494 117 ELSEEQLEALSNYQQLQNEKKQARLQEEFRKAVEE 151 (251)
T ss_pred hCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 48999999999887777 56666665554433
No 91
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=27.10 E-value=1.3e+02 Score=24.70 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 95 QALNKEYHDLLEQLEAEKKRGKILQ 119 (191)
Q Consensus 95 ~~l~~~~~~l~~~l~~~k~~~~~l~ 119 (191)
..|.++-+.+.++++++-++.+..+
T Consensus 207 d~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 207 DKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444333
No 92
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=26.75 E-value=40 Score=17.73 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=17.1
Q ss_pred ccccCCceeEEeecCCCCccccCCCC
Q 029592 39 TTLCALETTFFIFFPAGKAISFAHPG 64 (191)
Q Consensus 39 s~LC~v~va~vvfSp~gk~~~f~~Ps 64 (191)
+|-||..-.+++.+. |.+|.||+.+
T Consensus 3 ~ia~G~~ht~al~~~-g~v~~wG~n~ 27 (30)
T PF13540_consen 3 QIACGGYHTCALTSD-GEVYCWGDNN 27 (30)
T ss_dssp EEEEESSEEEEEE-T-TEEEEEE--T
T ss_pred EEEecCCEEEEEEcC-CCEEEEcCCc
Confidence 466888887777765 9999998754
No 93
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=26.63 E-value=3.6e+02 Score=23.84 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 143 LEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 143 ~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
.++..+++-.||.+...|++-.+++
T Consensus 296 ~dd~eElEMLLEaYf~qiD~~~nk~ 320 (414)
T KOG2662|consen 296 EDDVEELEMLLEAYFMQIDSTLNKL 320 (414)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888887776655543
No 94
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.55 E-value=38 Score=27.23 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=12.7
Q ss_pred CceeEEeecCCCCccc
Q 029592 44 LETTFFIFFPAGKAIS 59 (191)
Q Consensus 44 v~va~vvfSp~gk~~~ 59 (191)
-+-|+-||||+|.++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 3568899999998764
No 95
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=26.46 E-value=2.1e+02 Score=19.42 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=14.6
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIE 154 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le 154 (191)
....+|+.+|..+|...+-
T Consensus 58 ~e~~~lT~~E~~~ll~~~~ 76 (86)
T PF12958_consen 58 PEPKDLTNDEFYELLEFLF 76 (86)
T ss_pred hcchhcCHHHHHHHHHHHH
Confidence 3578899999888877654
No 96
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.23 E-value=4.6e+02 Score=23.32 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCC
Q 029592 138 VDELNLEELLTLNAM---IEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~---Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
-++++..||.++-+- |..-+..+..+.++.+..+.++
T Consensus 313 yEs~~~Relrqi~egQn~i~~~l~ql~rql~~il~~Q~~~ 352 (497)
T KOG3838|consen 313 YESLGHRELRQILEGQNAIHKQLAQLERQLDKILGPQARP 352 (497)
T ss_pred hhccchHHHHHHHhhhhHHHHHHHHHHHHHHHHhCccccC
Confidence 355778888887665 8888888888999888876555
No 97
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=25.81 E-value=92 Score=25.87 Aligned_cols=36 Identities=17% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQT 171 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~ 171 (191)
+.++.|+++||.+|...|..-+..|-+-....+++.
T Consensus 214 EeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEK 249 (285)
T PF06937_consen 214 EELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQEK 249 (285)
T ss_pred HHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999998888888777776665543
No 98
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=25.46 E-value=1.9e+02 Score=18.58 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029592 103 DLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKL 160 (191)
Q Consensus 103 ~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v 160 (191)
.++.++++++--|.-|.. .-+.+-+.++|.+++..++...+.+
T Consensus 22 ~lr~eiealkY~N~yL~~---------------~~v~~~g~~gl~~~~~e~~r~~~~~ 64 (66)
T PF07438_consen 22 ELRKEIEALKYMNDYLFD---------------QFVRDNGYEGLEEYEIEIERIKKDF 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHhhccCcchHHHHHHHHHHHHHHh
Confidence 345566666655554443 2344566788888888888776654
No 99
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.22 E-value=1.8e+02 Score=18.46 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRG 115 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~ 115 (191)
.+.+|..+|.-|+.+++.++.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888887766543
No 100
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.84 E-value=2.5e+02 Score=19.59 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=5.9
Q ss_pred CCChhhhhhhcc
Q 029592 63 PGDEPVITNLAR 74 (191)
Q Consensus 63 Psv~~Vi~ry~~ 74 (191)
|.+..++..|..
T Consensus 3 ~~~q~~~~~~q~ 14 (110)
T TIGR02338 3 PQVQNQLAQLQQ 14 (110)
T ss_pred HHHHHHHHHHHH
Confidence 444555555543
No 101
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=24.77 E-value=24 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred cccccccccccchhhccccCCceeE-EeecCCCCccccCCCCCh
Q 029592 24 PPIRRSGLFKKFSEVTTLCALETTF-FIFFPAGKAISFAHPGDE 66 (191)
Q Consensus 24 f~KRr~gL~KKa~ELs~LC~v~va~-vvfSp~gk~~~f~~Psv~ 66 (191)
-+.=..||+|=.-=..-||+|..++ -+.+..|++.+|++||..
T Consensus 49 ~s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 49 MSRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp --------------------------------------------
T ss_pred hhhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 3333456666666668899999999 777778999999999965
No 102
>PF14263 DUF4354: Domain of unknown function (DUF4354); PDB: 3NRF_B 3SB3_A.
Probab=24.62 E-value=23 Score=25.86 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccc
Q 029592 15 QGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAIS 59 (191)
Q Consensus 15 ~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~ 59 (191)
.++.....||.-.-+.|-.+.=+|+.+ |++.|+|+|+-|-
T Consensus 42 ~~k~~ytktF~V~vaN~s~~~idLsk~-----Cf~a~~~~gk~f~ 81 (124)
T PF14263_consen 42 GGKSFYTKTFDVTVANLSDKDIDLSKM-----CFKAYSPDGKEFK 81 (124)
T ss_dssp TTEEEEEEEEEEEEEE-SSS-EE-TT------EEEEEETTS-EEE
T ss_pred cCccceEEEEEEEEecCCCCccccccc-----hhhhccccCCEEE
Confidence 345555667777777788888888876 8999999998653
No 103
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.59 E-value=2.2e+02 Score=19.02 Aligned_cols=13 Identities=38% Similarity=0.496 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 029592 97 LNKEYHDLLEQLE 109 (191)
Q Consensus 97 l~~~~~~l~~~l~ 109 (191)
|.+++..||..|.
T Consensus 21 Li~ei~~LQ~sL~ 33 (80)
T PF10224_consen 21 LIQEILELQDSLE 33 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 104
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=24.14 E-value=95 Score=21.84 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=35.8
Q ss_pred CCccceeeeecCCCCCcccccccccccccccchhhccccCC----ceeEEeecCCCCccccCCCCC-------hhhhhhh
Q 029592 4 MGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCAL----ETTFFIFFPAGKAISFAHPGD-------EPVITNL 72 (191)
Q Consensus 4 mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v----~va~vvfSp~gk~~~f~~Psv-------~~Vi~ry 72 (191)
|||+|.+.+.|-.... --+.|+= ...---+|.++.|-| .++.++.+..|--|.+--|.. ...+|.|
T Consensus 1 MG~rr~krr~~ik~~~--~~L~k~F-tCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~vDvYs~wvDay 77 (104)
T COG4888 1 MGRRRRKRRKIIKRRP--QVLPKTF-TCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEPVDVYSAWVDAY 77 (104)
T ss_pred CCcccccccccCcccC--ccCCceE-ecCccCCeeeeEEEEEecCceeEEEcccCcceEEEeccccccchhHHHHHHHHH
Confidence 8888887776542211 1011111 111123677776744 467788888888777644442 3556666
No 105
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=23.98 E-value=55 Score=17.81 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.0
Q ss_pred ceeEEeecCCCCccccCC
Q 029592 45 ETTFFIFFPAGKAISFAH 62 (191)
Q Consensus 45 ~va~vvfSp~gk~~~f~~ 62 (191)
.-.-..|||+|+-..|++
T Consensus 10 ~~~~p~~SpDGk~i~f~s 27 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTS 27 (39)
T ss_dssp SEEEEEE-TTSSEEEEEE
T ss_pred cccCEEEecCCCEEEEEe
Confidence 456678999999877765
No 106
>PHA03161 hypothetical protein; Provisional
Probab=23.98 E-value=3.2e+02 Score=20.62 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKHLAERSAQT 171 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~ 171 (191)
+|-=-++.+..|.+.++++...|.-.++.+-..+
T Consensus 83 fd~kkl~~~E~L~drv~eLkeel~~ELe~l~~~q 116 (150)
T PHA03161 83 FDRHKLSAAEDLQDKILELKEDIHFEIEALNHGQ 116 (150)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444577888999999999999999999987654
No 107
>PRK11637 AmiB activator; Provisional
Probab=23.69 E-value=5e+02 Score=22.71 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029592 143 LEELLTLNAMIEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 143 ~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
.+++..+...|+.....+..|+..+...+...
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~ 140 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQGEHT 140 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 45777888888888888888888888876543
No 108
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=23.44 E-value=4.1e+02 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=20.7
Q ss_pred cccc--CCceeEEeecCCCC------ccccCCCCChhhhhhhccC
Q 029592 39 TTLC--ALETTFFIFFPAGK------AISFAHPGDEPVITNLART 75 (191)
Q Consensus 39 s~LC--~v~va~vvfSp~gk------~~~f~~Psv~~Vi~ry~~~ 75 (191)
.-+| |..|.+++-..+++ -++.-|+=+++++.|....
T Consensus 135 q~~~~~g~~VTIlask~s~RYRIQSd~~e~l~lv~~eLi~Rl~~~ 179 (377)
T PF14728_consen 135 QYLNGSGSVVTILASKTSNRYRIQSDSFEALWLVLEELIRRLKEH 179 (377)
T ss_pred EEeecCCceEEEEEecCCcEEEEEcCCHhHHHHHHHHHHHHHHHh
Confidence 3456 77777777555443 1222333357777777544
No 109
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=23.33 E-value=66 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.231 Sum_probs=23.1
Q ss_pred hhccccCCceeEEeecCCCCccccCCCC
Q 029592 37 EVTTLCALETTFFIFFPAGKAISFAHPG 64 (191)
Q Consensus 37 ELs~LC~v~va~vvfSp~gk~~~f~~Ps 64 (191)
+|.-.+|++|++||+.+.|.++-.|.+.
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 5666789999999999999987776654
No 110
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.31 E-value=4e+02 Score=21.49 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
.++...+|..++.+++.++...+.|.+ +- . .- =+++|+..++..|.+....|..-..+
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~---ll---------~-ka--~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLE---LL---------E-KA--KTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH---HH---------H-hc--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777776665555554 11 1 11 17899999888887776666544433
No 111
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=23.19 E-value=39 Score=28.35 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.9
Q ss_pred ccccCCceeEEeecC
Q 029592 39 TTLCALETTFFIFFP 53 (191)
Q Consensus 39 s~LC~v~va~vvfSp 53 (191)
.-+||++||++||--
T Consensus 183 ~~~~~~EICLavYek 197 (334)
T PF06020_consen 183 GQVSGFEICLAVYEK 197 (334)
T ss_pred CccccceEEeeehhh
Confidence 457999999999976
No 112
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=23.16 E-value=3.2e+02 Score=20.26 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=31.9
Q ss_pred ccCCCCChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 59 SFAHPGDEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 59 ~f~~Psv~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+..++-..|+..|... .+..+.+...+..|..++....-.++.|+.
T Consensus 11 ~~~~~~q~~v~a~yn~~---------------r~el~~ia~ki~~LE~d~~EH~lVi~tlk~ 57 (140)
T KOG4098|consen 11 AKEPSSQQAVVAKYNAL---------------RSELQQIASKITDLEMDLREHKLVIETLKD 57 (140)
T ss_pred ccCchhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 34455677888888654 245667778888888887776666666654
No 113
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.10 E-value=2.6e+02 Score=25.73 Aligned_cols=28 Identities=11% Similarity=-0.035 Sum_probs=16.5
Q ss_pred ccccchhhc--cccCCceeEEeecCCCCccc
Q 029592 31 LFKKFSEVT--TLCALETTFFIFFPAGKAIS 59 (191)
Q Consensus 31 L~KKa~ELs--~LC~v~va~vvfSp~gk~~~ 59 (191)
|+.+.=++. .+-|+.+.+.-..+ |..|+
T Consensus 91 LL~~~vvI~~l~l~g~~v~l~R~~~-G~~~~ 120 (555)
T TIGR03545 91 LLRGKVVIEELAIEGLAFGTERSTS-GAVPE 120 (555)
T ss_pred HhcCCcEEeEEEEecCEEEEEEccC-CCCCC
Confidence 555554443 34577777766666 77664
No 114
>PRK00064 recF recombination protein F; Reviewed
Probab=22.77 E-value=3.8e+02 Score=22.91 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=21.6
Q ss_pred EEeecCCCCccccCCCCC-hhhhhhhcc
Q 029592 48 FFIFFPAGKAISFAHPGD-EPVITNLAR 74 (191)
Q Consensus 48 ~vvfSp~gk~~~f~~Psv-~~Vi~ry~~ 74 (191)
+|+|+|.+-....+.|+. ...||++..
T Consensus 114 ~v~~~p~~~~l~~~~p~~RR~fLD~~~~ 141 (361)
T PRK00064 114 VVLFTPEDLRLVKGGPSERRRFLDRLLF 141 (361)
T ss_pred EEEEccchhhhhcCCHHHHHHHHHHHHh
Confidence 899999887667788984 678888865
No 115
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.74 E-value=2.7e+02 Score=19.29 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 029592 96 ALNKEYHDLLEQLEAE 111 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~ 111 (191)
.+..+|.+|++++...
T Consensus 7 ~I~~eI~kLqe~lk~~ 22 (98)
T PRK13848 7 KIREEIAKLQEQLKQA 22 (98)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777776653
No 116
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=22.68 E-value=59 Score=21.09 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=15.5
Q ss_pred cCCceeEEeecCCCCcccc
Q 029592 42 CALETTFFIFFPAGKAISF 60 (191)
Q Consensus 42 C~v~va~vvfSp~gk~~~f 60 (191)
-|+++|.|.|.|....|+.
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 4889999999997776653
No 117
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=22.50 E-value=73 Score=23.66 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=24.3
Q ss_pred cCCceeEEeecCCCCccccCCCC-ChhhhhhhccC
Q 029592 42 CALETTFFIFFPAGKAISFAHPG-DEPVITNLART 75 (191)
Q Consensus 42 C~v~va~vvfSp~gk~~~f~~Ps-v~~Vi~ry~~~ 75 (191)
|+...++-|..++|++..|-+|- +.+|+..|=.+
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~h 46 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPGH 46 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCCC
Confidence 33444444444889999999985 88898888544
No 118
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=22.45 E-value=1.2e+02 Score=22.03 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 143 LEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 143 ~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
++||.-|+..+..++..|+..++.|
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999887653
No 119
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=22.20 E-value=60 Score=24.39 Aligned_cols=18 Identities=33% Similarity=0.470 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 029592 138 VDELNLEELLTLNAMIED 155 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~ 155 (191)
+..||.+||.+|...|+.
T Consensus 21 L~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 21 LAKLSPEELEELENELEE 38 (147)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 456999999999987754
No 120
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=22.19 E-value=1.3e+02 Score=22.14 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHH
Q 029592 103 DLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEE 145 (191)
Q Consensus 103 ~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~ee 145 (191)
.|+++|++.++.++.+.+ ..+.+.|.+.++.-+-+
T Consensus 7 ~Lq~qlE~Ake~Lk~vDe--------nIkKltGRDp~e~rp~q 41 (134)
T PF04697_consen 7 TLQAQLEKAKESLKNVDE--------NIKKLTGRDPSENRPGQ 41 (134)
T ss_pred HHHHHHHHHHHHhhhhhH--------HHHHHhCCCccccCccc
Confidence 455666666666666655 44556666666665444
No 121
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.17 E-value=4.6e+02 Score=22.76 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=27.7
Q ss_pred ChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 65 DEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 65 v~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
++.+++.|.......+. ........++..++.+++++++....+...-++
T Consensus 150 ~n~~~~~y~~~~~~~~~------~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 150 ANAFAQAYIDTNIELKV------EPAQKAALWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677553211111 112244666777777777777776655554443
No 122
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=22.03 E-value=56 Score=20.74 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=18.0
Q ss_pred cCCceeEEeecCCCCccccCCCC-Chhhhhh
Q 029592 42 CALETTFFIFFPAGKAISFAHPG-DEPVITN 71 (191)
Q Consensus 42 C~v~va~vvfSp~gk~~~f~~Ps-v~~Vi~r 71 (191)
|+..-.++|+ |.+..|....|. +.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHh
Confidence 6555555555 667777766664 6666654
No 123
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=21.97 E-value=2.8e+02 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+..+..++..|+.++..+-++|..|+.
T Consensus 16 ~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 16 QLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555543
No 124
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=21.81 E-value=53 Score=24.13 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=20.4
Q ss_pred ceeEEeecCCCCccccCCCCChhhhhhh
Q 029592 45 ETTFFIFFPAGKAISFAHPGDEPVITNL 72 (191)
Q Consensus 45 ~va~vvfSp~gk~~~f~~Psv~~Vi~ry 72 (191)
-+|+|+.+| -++-|..|+-++++.+|
T Consensus 15 G~~ii~~G~--~l~~y~tPTeEeL~~r~ 40 (128)
T PF07960_consen 15 GAVIIGGGP--ALVKYTTPTEEELFKRY 40 (128)
T ss_pred cceeEeech--HHheecCCCHHHHHHhc
Confidence 456667766 45677899999999998
No 125
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=21.64 E-value=72 Score=24.16 Aligned_cols=19 Identities=21% Similarity=0.586 Sum_probs=15.3
Q ss_pred cccCCceeEEeecCCCCcc
Q 029592 40 TLCALETTFFIFFPAGKAI 58 (191)
Q Consensus 40 ~LC~v~va~vvfSp~gk~~ 58 (191)
.-|++.|=+++|||.-+.|
T Consensus 109 p~c~iKvL~LlYs~kk~~f 127 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAF 127 (152)
T ss_dssp SSSS-SEEEEEEETTTTEE
T ss_pred CCCceEEEEEEEcCCCceE
Confidence 5799999999999977754
No 126
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.54 E-value=3.6e+02 Score=20.35 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
..+..++-.+..++.++.+.....+..+. --++|.+-|..+|...-..+...|.+|=.+|..
T Consensus 6 ~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~----------------lge~L~~iDFeqLkien~~l~~kIeERn~eL~~ 67 (177)
T PF13870_consen 6 NEISKLRLKNITLKHQLAKLEEQLRQKEE----------------LGEGLHLIDFEQLKIENQQLNEKIEERNKELLK 67 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666655544443332 125688888888888888888888888777654
No 127
>PF11800 RP-C_C: Replication protein C C-terminal region; InterPro: IPR021760 Replication protein C is involved in the early stages of viral DNA replication.
Probab=21.52 E-value=3.1e+02 Score=21.46 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 140 ELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 140 ~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
.++.++|..+...|+.++..|.........
T Consensus 20 ~~~~~~L~~l~~~L~~l~~~v~~~le~~~~ 49 (207)
T PF11800_consen 20 KASLADLEALLDELEALLEEVENALESQEK 49 (207)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 478999999999999999999888876543
No 128
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=21.13 E-value=1.8e+02 Score=18.37 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=16.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKE----YHDLLEQLEAEKKRGKILQ 119 (191)
Q Consensus 92 ~~~~~l~~~----~~~l~~~l~~~k~~~~~l~ 119 (191)
..+.+|+++ +..|.++|+.++.+++.|.
T Consensus 10 ~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 10 KSILFLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345556555 4455566666666666554
No 129
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.05 E-value=4.1e+02 Score=20.71 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=23.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLA 165 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~ 165 (191)
...+..+++|-.+....-+...+.-+.|..
T Consensus 144 ~g~~~vtpedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 144 AGTNHVTPEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668888888888888888887776654
No 130
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=20.89 E-value=2.5e+02 Score=19.63 Aligned_cols=30 Identities=7% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 141 LNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 141 Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
|+.+++..|...|...+..+..++......
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~~~~~ 30 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADKTLEH 30 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899999999988888887776554
No 131
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.87 E-value=7.1e+02 Score=23.42 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+..|..++..|+.+++.+++.+++|+.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~ 457 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLES 457 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544
No 132
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.76 E-value=5.9e+02 Score=22.48 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029592 97 LNKEYHDLLEQLEAEKKRGKILQ 119 (191)
Q Consensus 97 l~~~~~~l~~~l~~~k~~~~~l~ 119 (191)
+..++..|.++++.++.+...++
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~ 354 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLK 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 133
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=20.63 E-value=1.4e+02 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=37.1
Q ss_pred cccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhh
Q 029592 28 RSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNL 72 (191)
Q Consensus 28 r~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry 72 (191)
-.+||+++.||++=--+++.++=||. ..++..+.|.|-+.|..|
T Consensus 445 ~~e~i~t~~elTvgDtsp~~L~EySE-e~P~~Lsn~GMas~l~nY 488 (968)
T COG5179 445 VQEIIKTAGELTVGDTSPFSLFEYSE-EEPFFLSNPGMASLLNNY 488 (968)
T ss_pred hhhhhccccceeccCCCceeeeeecc-cCceeecCchHHHHHHHH
Confidence 36799999999999999999999998 555556778887777777
No 134
>PRK10132 hypothetical protein; Provisional
Probab=20.54 E-value=3.2e+02 Score=19.31 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 139 DELNLEELLTLNAMIEDLQEKLQKHLA 165 (191)
Q Consensus 139 ~~Ls~eeL~~l~~~Le~~l~~v~~r~~ 165 (191)
.+.+-+++.++...++..+...+++..
T Consensus 36 ~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 36 GSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667788888888888888877665
No 135
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=20.40 E-value=79 Score=22.60 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=27.7
Q ss_pred Ccccc-cccccccccc---------cchhhccccCCceeEEeecCCCC
Q 029592 19 ARQVV-PPIRRSGLFK---------KFSEVTTLCALETTFFIFFPAGK 56 (191)
Q Consensus 19 ~R~~t-f~KRr~gL~K---------Ka~ELs~LC~v~va~vvfSp~gk 56 (191)
.+.++ ||+=|+-|.+ |+.|+.+-||.++-+++..|.|.
T Consensus 48 Tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 48 TGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred cCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 34455 4555554554 56899999999999999999553
No 136
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.38 E-value=2.7e+02 Score=18.47 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029592 95 QALNKEYHDLLEQLEAEKKRGKI 117 (191)
Q Consensus 95 ~~l~~~~~~l~~~l~~~k~~~~~ 117 (191)
+++..+..+|..+|++++.+...
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655544333
No 137
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=20.35 E-value=4.4e+02 Score=20.79 Aligned_cols=52 Identities=17% Similarity=0.327 Sum_probs=30.5
Q ss_pred ChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 65 DEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 65 v~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
-+.++.|....-.... ..+..+-..+++.+.++.....+|..+++.|.+|+.
T Consensus 18 keel~~rLR~~E~ek~----~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqe 69 (195)
T PF10226_consen 18 KEELVRRLRRAEAEKM----SLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQE 69 (195)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666644321111 123345566777777777777777777777777765
No 138
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.04 E-value=1.2e+02 Score=27.47 Aligned_cols=20 Identities=30% Similarity=0.267 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029592 100 EYHDLLEQLEAEKKRGKILQ 119 (191)
Q Consensus 100 ~~~~l~~~l~~~k~~~~~l~ 119 (191)
++++|++||++++++...+.
T Consensus 32 kie~L~kql~~Lk~q~~~l~ 51 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLN 51 (489)
T ss_pred HHHHHHHHHHHHHHhhcccc
Confidence 55556666655555544443
Done!