Query 029592
Match_columns 191
No_of_seqs 113 out of 1205
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 01:30:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 4.6E-38 1.6E-42 214.5 -0.6 77 5-81 1-77 (90)
2 1egw_A MADS box transcription 100.0 5.3E-38 1.8E-42 209.3 -2.3 72 5-76 1-72 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.5E-37 1.2E-41 213.6 -1.7 73 2-74 14-86 (100)
4 1hbx_A SRF, serum response fac 100.0 3.7E-37 1.3E-41 210.9 -2.5 73 2-74 8-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.7E-36 5.8E-41 211.5 -2.2 71 2-72 7-77 (103)
6 2ic9_A Nucleocapsid protein; h 88.1 1.2 4.2E-05 29.9 5.5 81 93-184 6-86 (96)
7 4fi5_A Nucleoprotein; structur 88.1 1.8 6.3E-05 29.8 6.4 80 94-184 24-103 (113)
8 2k48_A Nucleoprotein; viral pr 80.9 6.6 0.00023 26.7 6.5 70 92-170 35-104 (107)
9 1s94_A S-syntaxin; three helix 69.5 30 0.001 25.3 8.6 72 92-170 36-107 (180)
10 2ic6_A Nucleocapsid protein; h 66.5 23 0.00078 22.7 6.5 67 93-171 6-75 (78)
11 3twe_A Alpha4H; unknown functi 65.5 11 0.00036 18.5 4.1 20 95-114 4-23 (27)
12 1j1e_C Troponin I, TNI; THIN f 59.9 51 0.0018 24.6 8.6 27 137-163 54-80 (180)
13 1j1d_C Troponin I, TNI; THIN f 56.0 51 0.0017 23.3 9.6 28 137-164 54-81 (133)
14 3s4r_A Vimentin; alpha-helix, 52.6 38 0.0013 22.3 5.6 30 93-122 10-39 (93)
15 3bbp_D GRIP and coiled-coil do 50.9 43 0.0015 20.9 5.1 60 53-120 2-64 (71)
16 1t6f_A Geminin; coiled-coil, c 50.0 29 0.00099 18.7 3.9 25 96-120 11-35 (37)
17 1fxk_A Prefoldin; archaeal pro 47.0 58 0.002 21.3 6.4 12 63-74 1-12 (107)
18 2ke4_A CDC42-interacting prote 46.8 61 0.0021 21.6 9.6 69 91-164 14-82 (98)
19 3mwp_A Nucleoprotein; structur 46.3 20 0.00069 30.7 4.1 27 137-163 98-124 (577)
20 1nkp_B MAX protein, MYC proto- 45.2 45 0.0015 21.2 5.0 31 90-120 45-75 (83)
21 1x79_B RAB GTPase binding effe 45.1 66 0.0023 22.0 5.9 74 92-170 6-85 (112)
22 1ez3_A Syntaxin-1A; three heli 44.0 72 0.0025 21.5 7.5 71 93-170 6-76 (127)
23 2oqq_A Transcription factor HY 43.7 42 0.0014 18.8 5.1 30 91-120 9-38 (42)
24 3efg_A Protein SLYX homolog; x 43.2 53 0.0018 20.9 4.9 35 86-120 22-56 (78)
25 2l5g_B Putative uncharacterize 43.1 43 0.0015 18.7 4.6 27 94-120 11-37 (42)
26 2oa5_A Hypothetical protein BQ 42.5 79 0.0027 21.6 7.7 54 101-160 10-63 (110)
27 1p9i_A Cortexillin I/GCN4 hybr 42.2 34 0.0012 17.2 3.3 26 144-169 2-27 (31)
28 3nrf_A APAG protein; structura 42.2 5.8 0.0002 27.1 0.2 40 15-59 22-61 (106)
29 1ytz_T Troponin T; muscle, THI 41.0 82 0.0028 21.3 8.2 27 137-163 38-64 (107)
30 3l4q_C Phosphatidylinositol 3- 40.8 55 0.0019 24.2 5.4 29 92-120 103-131 (170)
31 2wvr_A Geminin; DNA replicatio 40.1 1.2E+02 0.0041 23.0 7.1 27 94-120 117-143 (209)
32 2lw1_A ABC transporter ATP-bin 37.3 81 0.0028 20.2 7.7 56 97-163 20-75 (89)
33 4dnd_A Syntaxin-10, SYN10; str 36.1 1.1E+02 0.0037 21.4 8.4 28 140-167 101-128 (130)
34 1j1d_B Troponin T, TNT; THIN f 35.6 42 0.0014 22.8 3.7 28 137-164 38-65 (106)
35 3t98_B Nucleoporin NUP58/NUP45 35.3 95 0.0033 20.4 7.9 64 96-169 9-72 (93)
36 2wuj_A Septum site-determining 34.6 56 0.0019 19.3 3.8 29 92-120 27-55 (57)
37 3tso_C RAB11 family-interactin 34.3 89 0.003 19.8 4.9 26 138-163 11-36 (75)
38 1m2d_A [2Fe-2S] ferredoxin; th 33.7 14 0.00049 24.8 1.1 31 42-73 59-90 (110)
39 1nlw_A MAD protein, MAX dimeri 33.7 91 0.0031 19.7 5.4 31 90-120 45-75 (80)
40 2ky6_A Mediator of RNA polymer 32.2 26 0.00087 25.8 2.3 21 39-59 116-136 (166)
41 2rpa_A Katanin P60 ATPase-cont 31.5 10 0.00035 24.4 0.0 57 32-111 16-72 (78)
42 2hv8_D RAB11 family-interactin 31.0 94 0.0032 19.0 5.3 34 136-169 18-51 (64)
43 2yy0_A C-MYC-binding protein; 29.8 87 0.003 18.3 5.2 29 92-120 19-47 (53)
44 3fx7_A Putative uncharacterize 29.5 1E+02 0.0035 20.4 4.7 30 141-170 6-35 (94)
45 3rmq_A Uncharacterized protein 29.3 14 0.00047 25.5 0.4 14 35-48 29-42 (116)
46 1g6u_A Domain swapped dimer; d 29.2 76 0.0026 17.5 7.2 27 139-165 15-41 (48)
47 1uii_A Geminin; human, DNA rep 28.9 1E+02 0.0034 19.9 4.5 25 96-120 50-74 (83)
48 1nkp_A C-MYC, MYC proto-oncoge 28.0 1.2E+02 0.0042 19.4 5.4 31 90-120 50-80 (88)
49 3rrk_A V-type ATPase 116 kDa s 27.7 1.2E+02 0.004 24.5 5.9 31 90-120 224-254 (357)
50 1a93_B MAX protein, coiled coi 27.3 77 0.0026 16.9 4.1 24 97-120 5-28 (34)
51 1lgh_B LH II, B800/850, light 26.8 89 0.003 17.7 3.5 23 136-158 3-25 (45)
52 2zvv_Y Cyclin-dependent kinase 26.6 13 0.00045 18.3 -0.1 12 18-29 15-26 (26)
53 1dd4_C 50S ribosomal protein L 26.2 42 0.0014 18.6 2.0 21 137-157 9-29 (40)
54 2zxx_A Geminin; coiled-coil, c 24.7 81 0.0028 20.2 3.4 26 95-120 37-62 (79)
55 1hlo_A Protein (transcription 24.2 71 0.0024 20.1 3.2 21 92-112 57-77 (80)
56 2z5i_A TM, general control pro 24.0 1.1E+02 0.0039 17.7 5.2 30 91-120 11-40 (52)
57 2wg5_A General control protein 24.0 84 0.0029 21.1 3.7 28 93-120 8-35 (109)
58 1lj9_A Transcriptional regulat 23.5 1.4E+02 0.0048 19.8 5.0 29 138-166 112-140 (144)
59 1wlq_A Geminin; coiled-coil; 2 23.2 1.2E+02 0.004 19.6 3.9 25 96-120 42-66 (83)
60 2k1v_A Insulin-like peptide IN 22.8 22 0.00074 17.8 0.3 10 35-44 14-23 (26)
61 3ghg_A Fibrinogen alpha chain; 22.5 3E+02 0.01 24.0 7.5 50 95-161 113-162 (562)
62 2dfs_A Myosin-5A; myosin-V, in 22.4 3.3E+02 0.011 25.9 8.6 15 26-40 921-935 (1080)
63 1txp_A HnRNP C, heterogeneous 22.0 89 0.003 15.8 3.3 18 144-161 6-23 (28)
64 3sl9_C B-cell CLL/lymphoma 9 p 21.0 1.3E+02 0.0044 17.2 3.5 36 135-174 4-39 (55)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=4.6e-38 Score=214.54 Aligned_cols=77 Identities=30% Similarity=0.443 Sum_probs=73.2
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccCCCCCCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLARTGNPDPG 81 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~~~~~~~ 81 (191)
||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+.....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~ 77 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES 77 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999887655443
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=5.3e-38 Score=209.32 Aligned_cols=72 Identities=31% Similarity=0.433 Sum_probs=69.8
Q ss_pred CccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccCC
Q 029592 5 GRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLARTG 76 (191)
Q Consensus 5 gR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~~ 76 (191)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998764
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=3.5e-37 Score=213.61 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCCCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhcc
Q 029592 2 TGMGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLAR 74 (191)
Q Consensus 2 ~~mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~ 74 (191)
++|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|++..|+++|..
T Consensus 14 ~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 14 QQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp -CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999954
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=3.7e-37 Score=210.90 Aligned_cols=73 Identities=25% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhcc
Q 029592 2 TGMGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLAR 74 (191)
Q Consensus 2 ~~mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~ 74 (191)
++|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.+|++|..
T Consensus 8 ~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 8 KTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp SSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998743
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.7e-36 Score=211.51 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=69.5
Q ss_pred CCCCccceeeeecCCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhh
Q 029592 2 TGMGRKKTQMKMNQGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNL 72 (191)
Q Consensus 2 ~~mgR~Ki~ik~I~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry 72 (191)
++|||+||+|++|+|+.+|+|||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.||+++
T Consensus 7 ~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 7 KTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp SSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999984
No 6
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=88.10 E-value=1.2 Score=29.85 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTD 172 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~ 172 (191)
.+++|+.++.....+|.-.+.+.+.... ......++++--++..-......|+.++..+...++.....+.
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~---------~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~k 76 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAER---------AVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQK 76 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3677777787777777766655554443 1111123344457777778888889999999988888877554
Q ss_pred CCCcCCCCCCCC
Q 029592 173 APTEGSSVDPNG 184 (191)
Q Consensus 173 ~~~~~~~~~~~~ 184 (191)
.+.-..+|+|
T Consensus 77 --~~~k~~DpTG 86 (96)
T 2ic9_A 77 --LASKPVDPTG 86 (96)
T ss_dssp --C---------
T ss_pred --cccCCCCCCC
Confidence 6666777777
No 7
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=88.09 E-value=1.8 Score=29.79 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTDA 173 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~ 173 (191)
+++|+.++.....+|.-.+.+.+.... ......++++--++..-......|+.++..++..++.....+..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~---------~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~ 94 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK---------QYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKN 94 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 677888888888888776665554443 11111233444577777788888888888888888887775533
Q ss_pred CCcCCCCCCCC
Q 029592 174 PTEGSSVDPNG 184 (191)
Q Consensus 174 ~~~~~~~~~~~ 184 (191)
.... .+|+|
T Consensus 95 ~~k~--~DPTG 103 (113)
T 4fi5_A 95 LGKE--QDPTG 103 (113)
T ss_dssp -----------
T ss_pred ccCC--CCCCC
Confidence 3222 77777
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=80.89 E-value=6.6 Score=26.68 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
+.+++|+.++.....+|.-.+.+.+.... ......++++--++..-......|+.++..++..++.....
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~---------~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~ 104 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEK---------AVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAA 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888776665554443 11111233444467777777888888888888888776653
No 9
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=69.49 E-value=30 Score=25.29 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
.++..+-.++..++..|..+......|+. ++. ..+....-..---++|..+...+-..-..|+.++..|-..
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~---~~~----~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKK---KHS----DILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777776666665 322 1121112122334788888888888888888888887643
No 10
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=66.45 E-value=23 Score=22.74 Aligned_cols=67 Identities=16% Similarity=0.155 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDE---LNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~---Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
.+++|..++.....+|.-.+.+.+.... -++.++++ -++..-......|+.++..++..++....
T Consensus 6 ~l~eLq~e~~~~E~QL~~A~QKLkdA~~------------~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAER------------AVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777787777777766655554433 11234444 46777777788888888888888777665
Q ss_pred cC
Q 029592 170 QT 171 (191)
Q Consensus 170 ~~ 171 (191)
.+
T Consensus 74 ~~ 75 (78)
T 2ic6_A 74 AQ 75 (78)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=65.48 E-value=11 Score=18.51 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029592 95 QALNKEYHDLLEQLEAEKKR 114 (191)
Q Consensus 95 ~~l~~~~~~l~~~l~~~k~~ 114 (191)
++|.++++.+++.+.+++++
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666676666665543
No 12
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=59.90 E-value=51 Score=24.57 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKH 163 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r 163 (191)
+|++|+.++|.++...|-..+..+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988887766655443
No 13
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=56.00 E-value=51 Score=23.33 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKHL 164 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r~ 164 (191)
++++|+.++|.++...|-..+..+.+-.
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEK 81 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEER 81 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999888877776655443
No 14
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=52.58 E-value=38 Score=22.32 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRK 122 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~ 122 (191)
.++.||.++...-+.+..+...|+.|+.++
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889988888888888888888888743
No 15
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=50.86 E-value=43 Score=20.91 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=20.0
Q ss_pred CCCCccccCC---CCChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 53 PAGKAISFAH---PGDEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 53 p~gk~~~f~~---Psv~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
|.+++-++.| ++.+.+.+++......- .+....+.+-......|.+++.-+|++++.++.
T Consensus 2 ~~~~~~~~~w~~~~s~eel~~~L~~~~k~~--------~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 2 PLGSLEPPLWHAEFTKEELVQKLSSTTKSA--------DHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ---------------------------CTT--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhccCCHHHHHHHHHHHHHHH--------HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555 56788888886653211 112233444445566677777778877777765
No 16
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=50.02 E-value=29 Score=18.71 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 96 ALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.|+..++.-.+++..++.+|..|++
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 4667777777777777777776653
No 17
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.98 E-value=58 Score=21.33 Aligned_cols=12 Identities=0% Similarity=0.108 Sum_probs=6.1
Q ss_pred CCChhhhhhhcc
Q 029592 63 PGDEPVITNLAR 74 (191)
Q Consensus 63 Psv~~Vi~ry~~ 74 (191)
|.+...+.+|..
T Consensus 1 ~~~Q~~i~~f~~ 12 (107)
T 1fxk_A 1 QNVQHQLAQFQQ 12 (107)
T ss_dssp CCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 344555555544
No 18
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=46.83 E-value=61 Score=21.56 Aligned_cols=69 Identities=19% Similarity=0.150 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029592 91 EATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHL 164 (191)
Q Consensus 91 ~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~ 164 (191)
+.+.+.|..++.+++.+++++....+-|.. |..+-....-+| +...+ ..+|.+....|+.+...+..-.
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~K---m~~vY~~nP~~G-D~~s~-~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKK---MKDVYEKTPQMG-DPASL-EPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH---HHHHHHHCGGGC-CGGGS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcCCccC-CHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 355677899999999999988776666665 554434444455 44445 7788888888887777664433
No 19
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=46.27 E-value=20 Score=30.74 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKH 163 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r 163 (191)
.+.+|+-+||.+|..-||+++++|...
T Consensus 98 kvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 98 RVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999988543
No 20
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=45.23 E-value=45 Score=21.16 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 90 HEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...++..|..+...+..+++.++.++..|+.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888888776
No 21
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.12 E-value=66 Score=22.05 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDEL------NLEELLTLNAMIEDLQEKLQKHLA 165 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~L------s~eeL~~l~~~Le~~l~~v~~r~~ 165 (191)
+....|+.....++++|+++......|+.. +........ ..+..| +...|.+|...+......|..++.
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~--w~~k~E~~k---~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~ 80 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF--IKQSSEDSS---HQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777666666641 111100000 011222 566778888888888888888888
Q ss_pred HHHhc
Q 029592 166 ERSAQ 170 (191)
Q Consensus 166 ~l~~~ 170 (191)
.|...
T Consensus 81 ~Lt~~ 85 (112)
T 1x79_B 81 VLMQS 85 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 22
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=43.99 E-value=72 Score=21.53 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
++..+-.++..++..+..++.....|.. ++... +-..+.+.-.-++|..+...+-..-..|+.++..|-..
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~---~~~~~----L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKR---KHSAI----LASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH----HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777766666666655 33211 11122222234577777777778888888888876543
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.67 E-value=42 Score=18.76 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 91 EATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 91 ~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+....++.....+|.+.+.-+..+|.+|++
T Consensus 9 E~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 9 ENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 445566666777777777777666666665
No 24
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=43.19 E-value=53 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=26.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 86 TLADHEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
..+.++..+..|+..+.+-+.+++.+......|..
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888888777777665
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.14 E-value=43 Score=18.74 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
++....+|.+..+++..++.+.+.|++
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 26
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=42.50 E-value=79 Score=21.56 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 029592 101 YHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKL 160 (191)
Q Consensus 101 ~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v 160 (191)
+++|.++|.+++-+|+.|..+ +... . --+.+..-|+..+-..+....-..+...
T Consensus 10 ~EeLaaeL~kLqmENK~LKkk--l~~~-g---~~~p~d~~LTp~qKea~I~s~~~~Lss~ 63 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQK--VKSS-G---AVSSDDSILTAAKRESIIVSSSRALGAV 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--C-------------CCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcC-C---CCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777662 2210 0 1114566699999999988887777653
No 27
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=42.18 E-value=34 Score=17.22 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 144 EELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 144 eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
++|..|...|+.--+.+..++++|+.
T Consensus 2 dqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777664
No 28
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=42.16 E-value=5.8 Score=27.09 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=30.2
Q ss_pred CCCCCcccccccccccccccchhhccccCCceeEEeecCCCCccc
Q 029592 15 QGNDARQVVPPIRRSGLFKKFSEVTTLCALETTFFIFFPAGKAIS 59 (191)
Q Consensus 15 ~n~~~R~~tf~KRr~gL~KKa~ELs~LC~v~va~vvfSp~gk~~~ 59 (191)
.++.....||.-.-..|-++.-+|+ ..|++.|+|+|+-|-
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLs-----k~C~~a~~~~gkef~ 61 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLK-----NSCLVAQSAAGQSFR 61 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECT-----TCEEEEEETTSCEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccc-----hhhheeeCcCCCEEE
Confidence 3444556677777788888888888 567999999998653
No 29
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.98 E-value=82 Score=21.34 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKH 163 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r 163 (191)
++++|+.++|.++...|-..+..+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeE 64 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTE 64 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988887776655443
No 30
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=40.75 E-value=55 Score=24.16 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+.+..++..-..|.+.+......+..++.
T Consensus 103 sRL~~l~~sk~~L~e~L~~q~~~~relER 131 (170)
T 3l4q_C 103 SRIAEIHESRTKLEQELRAQASDNREIDK 131 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665554
No 31
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=40.10 E-value=1.2e+02 Score=23.01 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 94 VQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 94 ~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...|+.++..+.+++..++++|..|+.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLke 143 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAE 143 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777777777777765
No 32
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.31 E-value=81 Score=20.24 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029592 97 LNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKH 163 (191)
Q Consensus 97 l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r 163 (191)
.+.++..|..+|+++..+...|+. .|. +.++..-+.+.+..+...++.+-..+...
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~--~la---------dp~~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQT--QVA---------DASFFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHH---------STTGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHh---------CcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777766666665 122 13333345777777777766665555443
No 33
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=36.11 E-value=1.1e+02 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 140 ELNLEELLTLNAMIEDLQEKLQKHLAER 167 (191)
Q Consensus 140 ~Ls~eeL~~l~~~Le~~l~~v~~r~~~l 167 (191)
+|+..||..-...+......|..-..+|
T Consensus 101 ~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 101 KLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3888888887777777777776655554
No 34
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=35.65 E-value=42 Score=22.81 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=22.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQEKLQKHL 164 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l~~v~~r~ 164 (191)
+|++||.++|.++...|-..+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999888877776654443
No 35
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=35.28 E-value=95 Score=20.42 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 96 ALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
+...-+.+..+++...+..++.++.. + ... .....+++.+|......+.+..-.+.+|+.++..
T Consensus 9 yF~~lv~~fe~rL~~Yr~~IeelE~~--L------~s~--s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~ 72 (93)
T 3t98_B 9 YFRVLVQQFEVQLQQYRQQIEELENH--L------ATQ--ANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHE 72 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--H------SCH--HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--H------Hhc--cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666655555555541 1 111 1235588899988888888888888888777654
No 36
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.56 E-value=56 Score=19.31 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.++..+...+..+..+...+++++..+++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777776665543
No 37
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=34.26 E-value=89 Score=19.77 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKH 163 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r 163 (191)
...+|-+||.++.-.++..+..-..+
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~ 36 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTH 36 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655555544443333
No 38
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=33.72 E-value=14 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=21.5
Q ss_pred cCCceeEEeecCCCCccccCCCC-Chhhhhhhc
Q 029592 42 CALETTFFIFFPAGKAISFAHPG-DEPVITNLA 73 (191)
Q Consensus 42 C~v~va~vvfSp~gk~~~f~~Ps-v~~Vi~ry~ 73 (191)
|+---.|+|+ |+|..|....|. +.+||+.+.
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l 90 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHL 90 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHH
Confidence 5444445566 888777777775 788888864
No 39
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.66 E-value=91 Score=19.74 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 90 HEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...+|..|..+...+..+.+.++.++..|+.
T Consensus 45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~ 75 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKR 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888887777765
No 40
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=32.25 E-value=26 Score=25.80 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=17.5
Q ss_pred ccccCCceeEEeecCCCCccc
Q 029592 39 TTLCALETTFFIFFPAGKAIS 59 (191)
Q Consensus 39 s~LC~v~va~vvfSp~gk~~~ 59 (191)
+.-|++.|=+++|||+-+.|-
T Consensus 116 ~~~ceiKvLiLlYs~~k~afl 136 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFM 136 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEE
T ss_pred CCCcceEEEEEEEcCCcceee
Confidence 556999999999999877653
No 41
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=31.53 E-value=10 Score=24.40 Aligned_cols=57 Identities=7% Similarity=0.022 Sum_probs=38.3
Q ss_pred cccchhhccccCCceeEEeecCCCCccccCCCCChhhhhhhccCCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 029592 32 FKKFSEVTTLCALETTFFIFFPAGKAISFAHPGDEPVITNLARTGNPDPGSYQRTLADHEATVQALNKEYHDLLEQLEAE 111 (191)
Q Consensus 32 ~KKa~ELs~LC~v~va~vvfSp~gk~~~f~~Psv~~Vi~ry~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~ 111 (191)
.|+|.|.+.+++=+.|++.|.- +.+-|++|...-.+ ......|++-..++.+|.+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-----------~~~qI~k~l~~~~d------------~~~r~kW~~~~~ei~~E~~~V 72 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-----------VLDQMNKYLYSVKD------------THLRQKWQQVWQEINVEAKQV 72 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-----------HHHHHHHHHHTCSC------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHH-----------HHHHHHHHHHhcCC------------HHHHHhHHHHHHHHHHHHHHH
Confidence 4788999999999999888876 66778888765421 133445655555555555543
No 42
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=30.98 E-value=94 Score=19.04 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=27.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029592 136 TPVDELNLEELLTLNAMIEDLQEKLQKHLAERSA 169 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~ 169 (191)
..+.++|-+||.+....-++....++.-|+.|+.
T Consensus 18 ae~~~~s~deL~~~l~eqee~n~~Le~YID~LL~ 51 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEEINFRLQDYIDRIIV 51 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999988888777777777777777665
No 43
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.83 E-value=87 Score=18.29 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.-+..|..+...|+.+++.+++++..+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888888877777777665
No 44
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=29.55 E-value=1e+02 Score=20.39 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 029592 141 LNLEELLTLNAMIEDLQEKLQKHLAERSAQ 170 (191)
Q Consensus 141 Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~ 170 (191)
.+++||..|...|+.-...+++....|..+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988887653
No 45
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=29.26 E-value=14 Score=25.47 Aligned_cols=14 Identities=29% Similarity=0.218 Sum_probs=11.4
Q ss_pred chhhccccCCceeE
Q 029592 35 FSEVTTLCALETTF 48 (191)
Q Consensus 35 a~ELs~LC~v~va~ 48 (191)
...+.+|||++|..
T Consensus 29 G~~ftaLCG~~VTp 42 (116)
T 3rmq_A 29 GRPFTALCGETVTP 42 (116)
T ss_dssp TCCEECTTSCEECC
T ss_pred CCccccccCCeecC
Confidence 35789999999974
No 46
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=29.22 E-value=76 Score=17.47 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 139 DELNLEELLTLNAMIEDLQEKLQKHLA 165 (191)
Q Consensus 139 ~~Ls~eeL~~l~~~Le~~l~~v~~r~~ 165 (191)
++.|++||..|+..|..+-+.+..-+.
T Consensus 15 egfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999998877666555544333
No 47
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=28.94 E-value=1e+02 Score=19.95 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 96 ALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.|+.++..+.+++..++..+..|+.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666655555554
No 48
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.97 E-value=1.2e+02 Score=19.45 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 90 HEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
...+++.|..+...+..+++.++.++..|..
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888888888888877776
No 49
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=27.69 E-value=1.2e+02 Score=24.45 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 90 HEATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 90 ~~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
....+..++.++..+..+++..+.+...+..
T Consensus 224 p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~ 254 (357)
T 3rrk_A 224 LGKAAARMKERARLAPEELVGIREEVARLSR 254 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888888887776655554443
No 50
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=27.29 E-value=77 Score=16.87 Aligned_cols=24 Identities=8% Similarity=0.347 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 97 LNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 97 l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
++.+....+.+++.++++|..|++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHH
Confidence 445566667777777777777776
No 51
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=26.81 E-value=89 Score=17.75 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 029592 136 TPVDELNLEELLTLNAMIEDLQE 158 (191)
Q Consensus 136 ~~l~~Ls~eeL~~l~~~Le~~l~ 158 (191)
.++.+|+.+|.++|....-....
T Consensus 3 ~s~tGLT~~EA~EfH~~~~~~~~ 25 (45)
T 1lgh_B 3 RSLSGLTEEEAIAVHDQFKTTFS 25 (45)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999999998776543
No 52
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=26.65 E-value=13 Score=18.27 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=8.3
Q ss_pred CCcccccccccc
Q 029592 18 DARQVVPPIRRS 29 (191)
Q Consensus 18 ~~R~~tf~KRr~ 29 (191)
+.|++.|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567777777763
No 53
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=26.19 E-value=42 Score=18.56 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 029592 137 PVDELNLEELLTLNAMIEDLQ 157 (191)
Q Consensus 137 ~l~~Ls~eeL~~l~~~Le~~l 157 (191)
.|.+|++-|+.+|...|++..
T Consensus 9 ~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHH
Confidence 567899999999999998764
No 54
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.72 E-value=81 Score=20.20 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 95 QALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 95 ~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
..|+.++..+++++..++++|+.|..
T Consensus 37 ~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 37 EKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777777766666554
No 55
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.22 E-value=71 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029592 92 ATVQALNKEYHDLLEQLEAEK 112 (191)
Q Consensus 92 ~~~~~l~~~~~~l~~~l~~~k 112 (191)
.++..|..+...|..+++.++
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444433
No 56
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.04 E-value=1.1e+02 Score=17.69 Aligned_cols=30 Identities=33% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 91 EATVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 91 ~~~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
+..+..|.+.+..|..++...+.+...+..
T Consensus 11 ERsV~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456778889999999999888888777765
No 57
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=23.97 E-value=84 Score=21.12 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 93 TVQALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 93 ~~~~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.+..|..++..+++++..++++++.++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556777777788888777777776654
No 58
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=23.54 E-value=1.4e+02 Score=19.81 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 138 VDELNLEELLTLNAMIEDLQEKLQKHLAE 166 (191)
Q Consensus 138 l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~ 166 (191)
+.+++.+|+..|...|......+...++.
T Consensus 112 ~~~l~~~e~~~l~~~l~~l~~~l~~~~~~ 140 (144)
T 1lj9_A 112 LQGLSEVEISQLADYLVRMRKNVSEDWEF 140 (144)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 45799999999999999998888777655
No 59
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.16 E-value=1.2e+02 Score=19.64 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029592 96 ALNKEYHDLLEQLEAEKKRGKILQK 120 (191)
Q Consensus 96 ~l~~~~~~l~~~l~~~k~~~~~l~~ 120 (191)
.|+..+..+.+++..++++|..|+.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654
No 60
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=22.84 E-value=22 Score=17.76 Aligned_cols=10 Identities=20% Similarity=0.806 Sum_probs=6.7
Q ss_pred chhhccccCC
Q 029592 35 FSEVTTLCAL 44 (191)
Q Consensus 35 a~ELs~LC~v 44 (191)
.+|||.||..
T Consensus 14 msDLs~lC~~ 23 (26)
T 2k1v_A 14 MTDLSALCXX 23 (26)
T ss_dssp HHHHTTTC--
T ss_pred HHHHHHHHhh
Confidence 3789999964
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.54 E-value=3e+02 Score=24.03 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 029592 95 QALNKEYHDLLEQLEAEKKRGKILQKRKMMNQQSYCRHLWETPVDELNLEELLTLNAMIEDLQEKLQ 161 (191)
Q Consensus 95 ~~l~~~~~~l~~~l~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~Ls~eeL~~l~~~Le~~l~~v~ 161 (191)
.+|+.+|..|+.+|+.....++.||..++-. ..+++.|+-.|+..+...+
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq-----------------~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQ-----------------LVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhcc
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.44 E-value=3.3e+02 Score=25.92 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=0.0
Q ss_pred cccccccccchhhcc
Q 029592 26 IRRSGLFKKFSEVTT 40 (191)
Q Consensus 26 KRr~gL~KKa~ELs~ 40 (191)
+...+|-+|..||..
T Consensus 921 ~~~~~LE~kl~eLq~ 935 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQR 935 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 63
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=22.04 E-value=89 Score=15.75 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029592 144 EELLTLNAMIEDLQEKLQ 161 (191)
Q Consensus 144 eeL~~l~~~Le~~l~~v~ 161 (191)
.||.++...++.++..+.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356666666666665543
No 64
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=20.97 E-value=1.3e+02 Score=17.24 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 029592 135 ETPVDELNLEELLTLNAMIEDLQEKLQKHLAERSAQTDAP 174 (191)
Q Consensus 135 ~~~l~~Ls~eeL~~l~~~Le~~l~~v~~r~~~l~~~~~~~ 174 (191)
+++.++||-++|..-+..|.. +++-...++-+....
T Consensus 4 ~~n~~gls~eqlehrerslqt----lrdi~r~~~pDdkd~ 39 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQT----LRDIQRMLFPDEKEF 39 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHH----HHHHHHHHC------
T ss_pred ccCCcccCHHHHHHHHHHHHH----HHHHHHHhCCccccc
Confidence 567899999999877766654 444444455555443
Done!