BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 029594
         (191 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 13/146 (8%)

Query: 52  YWHDI----QSGQNPTSISVVRPPTNTST-----NGFGIINMIDNPLTAGPEMSSKMVGR 102
           Y+HDI    ++  N TS  V  P   + T     + FG I + D+P+T    +SSK VGR
Sbjct: 37  YFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVGR 96

Query: 103 AQGFYALASQEEVDLLMAMNFAFIEGKYNGSSITVLGRNPVFSKMREMPVIGGSGLFRFA 162
           AQGFY   ++      ++  F      + G +IT  G +P+ +K R++ V GG+G F   
Sbjct: 97  AQGFYIYDTKNTYTSWLSFTFVLNSTHHQG-TITFAGADPIVAKTRDISVTGGTGDFFMH 155

Query: 163 RGYVQARTHNFDPKTGDATVQYNVYV 188
           RG     T  F+   G+A  +  VY+
Sbjct: 156 RGIATITTDAFE---GEAYFRLGVYI 178


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,629,687
Number of Sequences: 539616
Number of extensions: 2817280
Number of successful extensions: 5328
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5326
Number of HSP's gapped (non-prelim): 2
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)