Query 029594
Match_columns 191
No_of_seqs 120 out of 536
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 15:25:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1.6E-53 3.4E-58 340.3 19.3 144 45-190 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.00062 1.3E-08 55.6 12.1 120 43-173 4-127 (176)
3 PLN02343 allene oxide cyclase 97.3 0.011 2.3E-07 50.3 13.7 122 42-173 53-178 (229)
4 PF11528 DUF3224: Protein of u 54.9 1.1E+02 0.0023 24.3 10.4 88 97-190 40-133 (134)
5 PF06692 MNSV_P7B: Melon necro 43.2 33 0.00071 23.7 3.0 29 11-39 20-48 (61)
6 PF07127 Nodulin_late: Late no 24.4 74 0.0016 21.0 2.3 20 1-20 1-20 (54)
7 PF06347 SH3_4: Bacterial SH3 20.4 65 0.0014 20.7 1.4 16 88-103 6-21 (55)
8 PF08239 SH3_3: Bacterial SH3 19.3 86 0.0019 19.8 1.8 16 88-103 4-19 (55)
9 COG2372 CopC Uncharacterized p 17.3 4.9E+02 0.011 20.6 5.9 72 1-73 1-72 (127)
10 PF07436 Curto_V3: Curtovirus 16.9 1.1E+02 0.0023 22.5 1.9 21 13-34 8-28 (87)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1.6e-53 Score=340.26 Aligned_cols=144 Identities=49% Similarity=0.916 Sum_probs=135.3
Q ss_pred CeeEEEEEeeeecCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEeccccceEEEEEEEE
Q 029594 45 KLTHFQIYWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQEEVDLLMAMNFA 124 (191)
Q Consensus 45 ~~t~l~fY~Hd~~sg~n~t~~~V~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~v 124 (191)
|++||+|||||+++|||+|+++|+.++.+ ...+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~-~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~v 79 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGP-SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLV 79 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCC-CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEE
Confidence 67999999999999999999999988764 33399999999999999999999999999999999999999999999999
Q ss_pred EecCcccCceEEEEcccCCCCcceeeEEEeccccccceeEEEEEEEEeeCCCCCCeEEEEEEEEEe
Q 029594 125 FIEGKYNGSSITVLGRNPVFSKMREMPVIGGSGLFRFARGYVQARTHNFDPKTGDATVQYNVYVMH 190 (191)
Q Consensus 125 F~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~i~el~V~v~h 190 (191)
|++++||||||+++|+++..+++||||||||||+||||||||+++++ .+.+++++|+|||||++|
T Consensus 80 F~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 80 FEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 99999999999999999988999999999999999999999999999 233478999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.79 E-value=0.00062 Score=55.64 Aligned_cols=120 Identities=23% Similarity=0.367 Sum_probs=74.9
Q ss_pred CCCeeEEEEEeeeecCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEecc----ccceEE
Q 029594 43 KEKLTHFQIYWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQ----EEVDLL 118 (191)
Q Consensus 43 ~~~~t~l~fY~Hd~~sg~n~t~~~V~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s~----~~~~~~ 118 (191)
+.|...|++|=-+-..-..|.-.++-+ .+....|+.+-|.|+|++|.- .+-+|--+|+-+.-.. .+..+=
T Consensus 4 p~kvqel~vyeiNErdR~SPa~L~ls~----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryE 77 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGSPAYLRLSQ----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYE 77 (176)
T ss_dssp ----EEEEEEEE--S-S--S--B--SS----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEE
T ss_pred ccceEEEEEEEEcccccCCCcEEEccc----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEE
Confidence 456667777754444222233333321 233569999999999999976 6889999999776442 333455
Q ss_pred EEEEEEEecCcccCceEEEEcccCCCCcceeeEEEeccccccceeEEEEEEEEee
Q 029594 119 MAMNFAFIEGKYNGSSITVLGRNPVFSKMREMPVIGGSGLFRFARGYVQARTHNF 173 (191)
Q Consensus 119 ~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 173 (191)
-.+++.|-| | | .|+++|..... +..-++|.||||-|+.|+|-++++.+-+
T Consensus 78 aiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 78 AIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeec
Confidence 566777754 2 4 79999997543 5568999999999999999999998864
No 3
>PLN02343 allene oxide cyclase
Probab=97.32 E-value=0.011 Score=50.28 Aligned_cols=122 Identities=23% Similarity=0.371 Sum_probs=84.0
Q ss_pred CCCCeeEEEEEeeeecCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEecc----ccceE
Q 029594 42 KKEKLTHFQIYWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQ----EEVDL 117 (191)
Q Consensus 42 ~~~~~t~l~fY~Hd~~sg~n~t~~~V~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s~----~~~~~ 117 (191)
++.|...|++|=-+...-..|.-.+.-+.+ .....|+.+-|.++|++|.- -|-+|--.|+-+.-.. .+..+
T Consensus 53 ~p~kvQel~VYEiNErDR~SPa~L~ls~k~---~~~sLGDlVPFsNKlY~g~L--~kRlGiTaG~Cvliq~~pek~gDry 127 (229)
T PLN02343 53 RPTKVQELSVYEINERDRGSPAFLKLSKKS---VENALGDLVPFTNKLYTGDL--KKRLGITAGLCVLIQHVPEKKGDRY 127 (229)
T ss_pred CCceeEEEEEEEeccccCCCcceEEcccCc---ccccccceeccccccccchh--hhhhcccceeEEEEEeccccCCcee
Confidence 345556666664333321122223332221 12468999999999999865 5788999998765443 34456
Q ss_pred EEEEEEEEecCcccCceEEEEcccCCCCcceeeEEEeccccccceeEEEEEEEEee
Q 029594 118 LMAMNFAFIEGKYNGSSITVLGRNPVFSKMREMPVIGGSGLFRFARGYVQARTHNF 173 (191)
Q Consensus 118 ~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~ 173 (191)
=..+++.|-| | | .|+++|....- +..-++|.||+|-|+.|+|-+++..+-+
T Consensus 128 Ea~ySfyfGD--y-G-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 128 EAIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred EEEEEEEecC--c-c-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeee
Confidence 6777888855 2 5 79999997653 4568999999999999999999987765
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=54.87 E-value=1.1e+02 Score=24.31 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=51.3
Q ss_pred CcceEeEEEEEEEecc-ccceEEEEEEEEE-ecCcccCceEEEEcc--cCCCCcceeeEEE--eccccccceeEEEEEEE
Q 029594 97 SKMVGRAQGFYALASQ-EEVDLLMAMNFAF-IEGKYNGSSITVLGR--NPVFSKMREMPVI--GGSGLFRFARGYVQART 170 (191)
Q Consensus 97 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GSTL~v~G~--~~~~~~~rE~aVV--GGTG~Fr~ArGya~~~t 170 (191)
-.+.|++++-|+.+-. ++...+..+..+= +-+..+|| +.++-. ........+|-|| -|||++...+|-..++.
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 3567888888887754 3444555443221 11123563 555443 2222234589999 99999999999998876
Q ss_pred EeeCCCCCCeEEEEEEEEEe
Q 029594 171 HNFDPKTGDATVQYNVYVMH 190 (191)
Q Consensus 171 ~~~~~~~~~~i~el~V~v~h 190 (191)
.. . ...++|+..+-+
T Consensus 119 ~~-g----~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-G----QHAYDFEYTLPD 133 (134)
T ss_dssp ET-T----CEEEEEEEEEEE
T ss_pred CC-C----CceeeEEEECCC
Confidence 54 2 336677776643
No 5
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=43.18 E-value=33 Score=23.67 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhcccccceeeecccccc
Q 029594 11 QIIFLLFLLSSFTKIQVHGYAKTMNKNLM 39 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (191)
++|++.+++..+.+.+.+.|+-+++..+.
T Consensus 20 liis~~f~lI~~l~qq~~~y~HH~d~Ss~ 48 (61)
T PF06692_consen 20 LIISFVFFLITSLGQQGNTYVHHFDNSSV 48 (61)
T ss_pred HHHHHHHHHHhhhccCCCeeEEeecCccc
Confidence 45554444444456666666666665444
No 6
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=24.41 E-value=74 Score=20.95 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=13.6
Q ss_pred CCCccchhHHHHHHHHHHHh
Q 029594 1 MARFLPIFATQIIFLLFLLS 20 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (191)
|++.+-+.-..+||+.+|+.
T Consensus 1 Ma~ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLV 20 (54)
T ss_pred CccchhhHHHHHHHHHHHHh
Confidence 77867676667777666554
No 7
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=20.37 E-value=65 Score=20.71 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=13.8
Q ss_pred ccccCCCCCCcceEeE
Q 029594 88 PLTAGPEMSSKMVGRA 103 (191)
Q Consensus 88 ~lteGp~~~Sk~VGRA 103 (191)
+|+.+|+.+|+++.++
T Consensus 6 ~lr~~P~~~~~vv~~l 21 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARL 21 (55)
T ss_pred EEEcCCCCCCCEEEEE
Confidence 5788999999999876
No 8
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=19.26 E-value=86 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=13.0
Q ss_pred ccccCCCCCCcceEeE
Q 029594 88 PLTAGPEMSSKMVGRA 103 (191)
Q Consensus 88 ~lteGp~~~Sk~VGRA 103 (191)
.|+.+|+.+|+.|+.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 3688899999998875
No 9
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=17.29 E-value=4.9e+02 Score=20.63 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCccchhHHHHHHHHHHHhhhhcccccceeeeccccccCcCCCCeeEEEEEeeeecCCCCcceEEEecCCCC
Q 029594 1 MARFLPIFATQIIFLLFLLSSFTKIQVHGYAKTMNKNLMGLKKEKLTHFQIYWHDIQSGQNPTSISVVRPPTN 73 (191)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~fY~Hd~~sg~n~t~~~V~~~~~~ 73 (191)
|.|..+......+.++........+....|..+..|.....-.+-.-.+++++-+.+. ++=..+.+.++.+.
T Consensus 1 ~~~~~r~~~~~~~~~l~~~~~~~~a~AHa~l~~s~Pad~s~v~aaP~~i~L~Fse~ve-~~fs~~~l~~~d~~ 72 (127)
T COG2372 1 MARTARALALSALALLMLALVTPQAFAHAYLVSSNPADNSVVTAAPAAITLEFSEGVE-PGFSGAKLTGPDGE 72 (127)
T ss_pred CchhHHHHHHHHHHHHHHHhcCcchhheeeeecCCCCCcchhhcCceeEEEecCCccC-CCcceeEEECCCCC
No 10
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=16.89 E-value=1.1e+02 Score=22.52 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhcccccceeeec
Q 029594 13 IFLLFLLSSFTKIQVHGYAKTM 34 (191)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~ 34 (191)
+||+++++ .+...+.+||++.
T Consensus 8 lFLlFifs-illQsgtNfYGTf 28 (87)
T PF07436_consen 8 LFLLFIFS-ILLQSGTNFYGTF 28 (87)
T ss_pred HHHHHHHH-HHHhcCCceeeee
Done!