Query 029594
Match_columns 191
No_of_seqs 120 out of 536
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 01:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.8 2.5E-07 8.6E-12 75.2 14.5 130 44-189 14-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 9.8E-06 3.4E-10 66.1 15.0 90 77-173 51-144 (195)
3 3h6j_A Neuraminidase, sialidas 34.8 32 0.0011 29.6 3.7 55 113-169 371-435 (438)
4 2xdp_A Lysine-specific demethy 26.5 80 0.0027 23.7 4.3 57 75-151 63-119 (123)
5 2qqr_A JMJC domain-containing 25.6 68 0.0023 23.9 3.7 56 75-150 62-117 (118)
6 2krs_A Probable enterotoxin; a 13.9 71 0.0024 21.0 1.4 16 88-103 12-27 (74)
7 2kq8_A Cell WALL hydrolase; GF 13.0 61 0.0021 21.0 0.8 16 88-103 13-28 (70)
8 2kt8_A Probable surface protei 12.2 1.3E+02 0.0044 19.9 2.3 16 88-103 14-29 (76)
9 2q03_A Uncharacterized protein 10.7 5.3E+02 0.018 19.3 11.3 86 97-187 45-136 (138)
10 2lif_A Core protein P21; signa 13.8 59 0.002 18.3 0.0 16 8-23 3-18 (27)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.76 E-value=2.5e-07 Score=75.20 Aligned_cols=130 Identities=20% Similarity=0.329 Sum_probs=90.7
Q ss_pred CCeeEEEEEeeeecCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEEec----cccceEEE
Q 029594 44 EKLTHFQIYWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALAS----QEEVDLLM 119 (191)
Q Consensus 44 ~~~t~l~fY~Hd~~sg~n~t~~~V~~~~~~~~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s----~~~~~~~~ 119 (191)
.|...|.+|=-+-..-..|.-.+.-+ ++...-|+.+.|+++|.+|.. -+.||.-+|+-+... +.+..+-.
T Consensus 14 ~~vq~l~vye~NE~dr~sPa~L~l~~----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~ 87 (188)
T 2brj_A 14 SKVQELSVYEINELDRHSPKILKNAF----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEA 87 (188)
T ss_dssp -CCEEEEEEEECCSCSCCCCCBCCCS----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEE
T ss_pred cceEEEEEEEecccccCCCceEEccc----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEE
Confidence 45556777644333211122222221 223468999999999997755 589999999977665 23456777
Q ss_pred EEEEEEecCcccCceEEEEcccCCCCcceeeEEEeccccccceeEEEEEEEEeeCCCCCCeEEEEEEEEE
Q 029594 120 AMNFAFIEGKYNGSSITVLGRNPVFSKMREMPVIGGSGLFRFARGYVQARTHNFDPKTGDATVQYNVYVM 189 (191)
Q Consensus 120 ~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~i~el~V~v~ 189 (191)
.+++.|-+. | .|+++|..... +...+||+||||.|+.|+|.++++.+.+. ..++|.+|+.
T Consensus 88 tyS~yfgd~---G-hISvQGpy~t~-~Dt~LAITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 88 TYSFYFGDY---G-HLSVQGPYLTY-EDSFLAITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEECGGG---E-EEEEEEEEETT-BCEEEEEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EEEEEeCCC---c-eEEEecccccc-ccceeeEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 778888652 4 79999995322 55799999999999999999999999863 2478888774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.42 E-value=9.8e-06 Score=66.13 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCceeEEEEecccccCCCCCCcceEeEEEEEEEec----cccceEEEEEEEEEecCcccCceEEEEcccCCCCcceeeEE
Q 029594 77 NGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALAS----QEEVDLLMAMNFAFIEGKYNGSSITVLGRNPVFSKMREMPV 152 (191)
Q Consensus 77 ~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s----~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~aV 152 (191)
...|+.+.|+++|++|.. -+-||-..|+-+.-. ..+..+--.+++.|.+ .| +|+++|..-. -+..-++|
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEE
Confidence 459999999999999987 688999999976653 2233455666777765 35 7999999643 24567999
Q ss_pred EeccccccceeEEEEEEEEee
Q 029594 153 IGGSGLFRFARGYVQARTHNF 173 (191)
Q Consensus 153 VGGTG~Fr~ArGya~~~t~~~ 173 (191)
+||||.|+.|+|-+++..+-+
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEET
T ss_pred ecCcceEcccEEEEEEeEeee
Confidence 999999999999999988775
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=34.80 E-value=32 Score=29.56 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=35.8
Q ss_pred ccceEEEEEEEEEecCcccCceEEEE-cccCCCCcceeeEEEeccccc---------cceeEEEEEE
Q 029594 113 EEVDLLMAMNFAFIEGKYNGSSITVL-GRNPVFSKMREMPVIGGSGLF---------RFARGYVQAR 169 (191)
Q Consensus 113 ~~~~~~~~~~~vF~~g~~~GSTL~v~-G~~~~~~~~rE~aVVGGTG~F---------r~ArGya~~~ 169 (191)
....|...|--.|+||.+|||--++. |...+ ..+.-+-|=|||.| |.|.||...+
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 34468888888999999999866553 22221 11223445578877 6788887665
No 4
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=26.54 E-value=80 Score=23.72 Aligned_cols=57 Identities=18% Similarity=0.324 Sum_probs=36.6
Q ss_pred CCCCceeEEEEecccccCCCCCCcceEeEEEEEEEeccccceEEEEEEEEEecCcccCceEEEEcccCCCCcceeeE
Q 029594 75 STNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQEEVDLLMAMNFAFIEGKYNGSSITVLGRNPVFSKMREMP 151 (191)
Q Consensus 75 ~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~a 151 (191)
++..-|..+-+.| ++|.-.+++.+|+ .....+++.|+|| | ...+-|+.+-....|+|
T Consensus 63 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKW--PDGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEc--CCCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 3456888888888 6776655555554 4566778999985 4 44456666544444544
No 5
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=25.56 E-value=68 Score=23.94 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=35.6
Q ss_pred CCCCceeEEEEecccccCCCCCCcceEeEEEEEEEeccccceEEEEEEEEEecCcccCceEEEEcccCCCCcceee
Q 029594 75 STNGFGIINMIDNPLTAGPEMSSKMVGRAQGFYALASQEEVDLLMAMNFAFIEGKYNGSSITVLGRNPVFSKMREM 150 (191)
Q Consensus 75 ~~~~FG~~~V~Dd~lteGp~~~Sk~VGRAQG~~~~~s~~~~~~~~~~~~vF~~g~~~GSTL~v~G~~~~~~~~rE~ 150 (191)
++..-|..+-+.| ++|.-.+++-+|+ .-...+++.|+|| |. ..+-|+.+-....|+
T Consensus 62 GpP~~G~~V~V~W--~DG~~y~a~f~g~-------------~~~~~Y~V~feDg----s~-~~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 62 GPPAEGEVVQVRW--TDGQVYGAKFVAS-------------HPIQMYQVEFEDG----SQ-LVVKRDDVYTLDEEL 117 (118)
T ss_dssp CCCCTTCEEEEEC--TTSCEEEEEEEEE-------------EEEEEEEEEETTS----CE-EEECGGGEEETTSCC
T ss_pred CCCCCCCEEEEEc--CCCCEeeeEEece-------------eEEEEEEEEECCC----CE-EEEcHHHeeccccCC
Confidence 3456888888888 7887666666655 4566788999984 44 344555543333343
No 6
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=13.90 E-value=71 Score=21.00 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=13.6
Q ss_pred ccccCCCCCCcceEeE
Q 029594 88 PLTAGPEMSSKMVGRA 103 (191)
Q Consensus 88 ~lteGp~~~Sk~VGRA 103 (191)
.|+.+|+.++++||++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 5789999999998874
No 7
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=13.05 E-value=61 Score=21.04 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=13.5
Q ss_pred ccccCCCCCCcceEeE
Q 029594 88 PLTAGPEMSSKMVGRA 103 (191)
Q Consensus 88 ~lteGp~~~Sk~VGRA 103 (191)
.|+.||+.++++||++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5788999999999864
No 8
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=12.17 E-value=1.3e+02 Score=19.92 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=12.9
Q ss_pred ccccCCCCCCcceEeE
Q 029594 88 PLTAGPEMSSKMVGRA 103 (191)
Q Consensus 88 ~lteGp~~~Sk~VGRA 103 (191)
.|+.||+.++++||.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 5788999999888753
No 9
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=10.68 E-value=5.3e+02 Score=19.31 Aligned_cols=86 Identities=15% Similarity=0.144 Sum_probs=50.1
Q ss_pred CcceEeEEEEEEEecc-ccceEEEEEEEEE-ecCcccCceEEEEc--ccCCCCcceeeEEEe--ccccccceeEEEEEEE
Q 029594 97 SKMVGRAQGFYALASQ-EEVDLLMAMNFAF-IEGKYNGSSITVLG--RNPVFSKMREMPVIG--GSGLFRFARGYVQART 170 (191)
Q Consensus 97 Sk~VGRAQG~~~~~s~-~~~~~~~~~~~vF-~~g~~~GSTL~v~G--~~~~~~~~rE~aVVG--GTG~Fr~ArGya~~~t 170 (191)
-.+.|++++-++.+-. ++...++.+..+= +-+..+|| +.++- ..........|-||= |||++...+|-..++.
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGS-FILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 3577888888887765 4434444333211 11223453 44443 333223346888987 9999999999998864
Q ss_pred EeeCCCCCCeEEEEEEE
Q 029594 171 HNFDPKTGDATVQYNVY 187 (191)
Q Consensus 171 ~~~~~~~~~~i~el~V~ 187 (191)
.. ++..-++|+..
T Consensus 124 ~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 TE----NGQANYQITLQ 136 (138)
T ss_dssp CS----TTEEEEEEEEE
T ss_pred ec----CCceEEEEEEe
Confidence 32 24444555543
No 10
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=13.76 E-value=59 Score=18.31 Aligned_cols=16 Identities=50% Similarity=0.391 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHhhhh
Q 029594 8 FATQIIFLLFLLSSFT 23 (191)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (191)
.+.+.||++.++|++.
T Consensus 3 gcsfsiFlLaLlscLt 18 (27)
T 2lif_A 3 GFPFSIFLLALLSCIT 18 (27)
Confidence 3557778777777654
Done!