BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029595
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 84 RTLFFLVTACEIVQVSVLCSKHHWSLST---LANLPQVHYVHSTI--SYRSTWGNVTPKP 138
+ + F V AC ++ +CS HH +++T + N ++H V I S+ S G TP
Sbjct: 64 KIVHFSVNAC----LAPICSLHHVAVTTVEGIGNTQKLHPVQERIARSHGSQCGFCTPGI 119
Query: 139 SISIY 143
+S+Y
Sbjct: 120 VMSMY 124
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 84 RTLFFLVTACEIVQVSVLCSKHHWSLST---LANLPQVHYVHSTI--SYRSTWGNVTPKP 138
+ + F V AC ++ +CS HH +++T + N ++H V I S+ S G TP
Sbjct: 64 KIVHFSVNAC----LAPICSLHHVAVTTVEGIGNTQKLHPVQERIARSHGSQCGFCTPGI 119
Query: 139 SISIY 143
+S+Y
Sbjct: 120 VMSMY 124
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 84 RTLFFLVTACEIVQVSVLCSKHHWSLST---LANLPQVHYVHSTI--SYRSTWGNVTPKP 138
+ + F V AC ++ +CS HH +++T + N ++H V I S+ S G TP
Sbjct: 64 KIVHFSVNAC----LAPICSLHHVAVTTVEGIGNTQKLHPVQERIARSHGSQCGFCTPGI 119
Query: 139 SISIY 143
+S+Y
Sbjct: 120 VMSMY 124
>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
Length = 296
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 56 TAAFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIVQVSV-----LCSKHHWSLS 110
+ F +++ G VGI P ++WCG + V E++ S+ CS+ +SL
Sbjct: 54 ESKFYKMMQGGVGI-------PSIKWCGAEGDYNVMVMELLGPSLEDLFNFCSR-KFSLK 105
Query: 111 T---LAN--LPQVHYVHST 124
T LA+ + ++ Y+HS
Sbjct: 106 TVLLLADQMISRIEYIHSK 124
>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
Form
pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
Form
pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
Length = 296
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 16/98 (16%)
Query: 42 GTFASAGEIIWI----LQTA-AFLEVVHGAVGILPSGVWLPFMQWCGRTLFFLVTACEIV 96
GT +AGE + I ++T L + ++ GV +P ++WCG + V E++
Sbjct: 28 GTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMELL 87
Query: 97 QVSV-----LCSKHHWSLST---LAN--LPQVHYVHST 124
S+ CS+ +SL T LA+ + ++ Y+HS
Sbjct: 88 GPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSK 124
>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
Residues 1-317 Complex With Bound Tungstate
pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
Containing Residues 1-317
Length = 317
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 11/66 (16%)
Query: 69 ILPSGVWLPFMQWCGRTLFFLVTACEIVQVSV-----LCSKHHWSLST---LAN--LPQV 118
++ GV +P ++WCG + V E++ S+ CS+ +SL T LA+ + ++
Sbjct: 58 MMQGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSR-KFSLKTVLLLADQMISRI 116
Query: 119 HYVHST 124
Y+HS
Sbjct: 117 EYIHSK 122
>pdb|3TLQ|A Chain A, Crystal Structure Of Eal-Like Domain Protein Ydiv
pdb|3TLQ|B Chain B, Crystal Structure Of Eal-Like Domain Protein Ydiv
Length = 242
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 131 WGNVTPKPSISIYEREKYLCKFLCWPPFQLL 161
W N+TP+ + + ER+ Y + L +P +LL
Sbjct: 88 WLNLTPQVATLLLERDNYAGELLKYPFIELL 118
>pdb|4ES4|A Chain A, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|C Chain C, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|E Chain E, Crystal Structure Of Ydiv And Flhd Complex
pdb|4ES4|G Chain G, Crystal Structure Of Ydiv And Flhd Complex
Length = 237
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 131 WGNVTPKPSISIYEREKYLCKFLCWPPFQLL 161
W N+TP+ + + ER+ Y + L +P +LL
Sbjct: 83 WLNLTPQVATLLLERDNYAGELLKYPFIELL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,571,426
Number of Sequences: 62578
Number of extensions: 201934
Number of successful extensions: 441
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 8
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)