Query 029595
Match_columns 191
No_of_seqs 129 out of 387
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 01:35:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wqb_A Aptotoxin VII; spider'S 43.2 2.7 9.1E-05 25.1 -1.2 15 163-177 18-32 (32)
2 3e4h_A VARV peptide F; cycloti 25.2 26 0.00088 20.8 1.0 15 165-179 13-27 (29)
3 4aw6_A CAAX prenyl protease 1 24.6 8.1 0.00028 35.7 -1.9 50 103-160 203-252 (482)
4 2a1i_A DNA excision repair pro 20.6 24 0.00082 27.9 0.4 23 101-126 113-135 (146)
5 2elj_A Transcriptional adapter 19.8 33 0.0011 24.5 0.9 21 141-161 22-42 (88)
6 2cuj_A Transcriptional adaptor 19.3 34 0.0012 25.5 0.9 26 136-161 34-60 (108)
7 2lur_A Kalata; beta hairpin, p 19.2 40 0.0014 19.6 1.0 12 164-175 12-23 (29)
8 2aqe_A Transcriptional adaptor 19.2 34 0.0012 24.5 0.9 22 140-161 21-42 (90)
9 2lq4_p Lysophosphatidic acid r 16.5 34 0.0012 24.0 0.3 11 166-176 33-43 (80)
10 2fqa_A Violacin 1, violacin A; 15.6 51 0.0017 19.2 0.8 10 165-174 17-26 (27)
No 1
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=43.18 E-value=2.7 Score=25.11 Aligned_cols=15 Identities=53% Similarity=1.119 Sum_probs=13.5
Q ss_pred cCCCceeeccceehh
Q 029595 163 CCPGCICDVSICLDQ 177 (191)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (191)
||.|=.||-|.|-.|
T Consensus 18 ccsglkcdgsechpq 32 (32)
T 1wqb_A 18 CCSGLKCDGSECHPQ 32 (32)
T ss_dssp BCTTCEESSSBEECC
T ss_pred cccCccccCcccCCC
Confidence 999999999999765
No 2
>3e4h_A VARV peptide F; cyclotide, circular proteins, cystine knot, cyclization, plant protein, knottin, plant defense; 1.80A {Viola arvensis} SCOP: g.3.3.1 PDB: 2jwm_A 1nb1_A 1znu_A 2kuk_A 2jue_A* 1n1u_A 1orx_A
Probab=25.24 E-value=26 Score=20.75 Aligned_cols=15 Identities=27% Similarity=0.906 Sum_probs=12.4
Q ss_pred CCceeeccceehhhh
Q 029595 165 PGCICDVSICLDQTL 179 (191)
Q Consensus 165 ~~~~~~~~~~~~~~~ 179 (191)
|||.|+-.+|....|
T Consensus 13 ~GCsC~~~vC~~NsL 27 (29)
T 3e4h_A 13 AGCSCSWPVCTRNGV 27 (29)
T ss_dssp TTCEEETTEEEBTTB
T ss_pred CCCEeCCCeeeeccc
Confidence 899999999976544
No 3
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=24.58 E-value=8.1 Score=35.69 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=39.9
Q ss_pred eeeehhhhhhcccchhHHHHHhCCCCcceeeecCCCchhHHHHHHHHHhhhcCCcccc
Q 029595 103 SKHHWSLSTLANLPQVHYVHSTISYRSTWGNVTPKPSISIYEREKYLCKFLCWPPFQL 160 (191)
Q Consensus 103 lllAWSitEIIRY~y~~Y~~~Llg~~~tWLRYt~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (191)
..++.++.=+.=||. +...+.| +++|.|+-.++++-+-+||..+.|.-++
T Consensus 203 ~~~~~~l~~~~iyP~--~I~PLfn------k~~Pl~dg~L~~~Ie~la~~~~fp~~~v 252 (482)
T 4aw6_A 203 FTLVVSLVLVTIYAD--YIAPLFD------KFTPLPEGKLKEEIEVMAKSIDFPLTKV 252 (482)
T ss_dssp HHHHHHHHHHHHHHH--HTHHHHS------CEEECCSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHH--HHHHHcC------CCccCCcHHHHHHHHHHHHHcCCCCCcE
Confidence 344455555667888 7777777 7999999999999999999999997554
No 4
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=20.65 E-value=24 Score=27.92 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=19.7
Q ss_pred eeeeeehhhhhhcccchhHHHHHhCC
Q 029595 101 LCSKHHWSLSTLANLPQVHYVHSTIS 126 (191)
Q Consensus 101 ~~lllAWSitEIIRY~y~~Y~~~Llg 126 (191)
.++++|||.-|.-||-= .++...
T Consensus 113 ~TLiLawS~eEaa~Yle---~~k~~e 135 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE---TYKAYE 135 (146)
T ss_dssp CEEEEESSHHHHHHHHH---HHHTCC
T ss_pred CEEEEECCHHHHHHHHH---HHHHhc
Confidence 89999999999999987 666554
No 5
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=19.80 E-value=33 Score=24.47 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhhhcCCccccc
Q 029595 141 SIYEREKYLCKFLCWPPFQLL 161 (191)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~ 161 (191)
-+.++|+.||..+..||-+-|
T Consensus 22 lLs~~E~~LC~~lrL~P~~YL 42 (88)
T 2elj_A 22 LLSNDEQQLCIQLKILPKPYL 42 (88)
T ss_dssp SSCHHHHHHHHHTTCCHHHHH
T ss_pred hcCHHHHHHHHHhCCCHHHHH
Confidence 568999999999999996543
No 6
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=19.29 E-value=34 Score=25.53 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=20.0
Q ss_pred CCC-chhHHHHHHHHHhhhcCCccccc
Q 029595 136 PKP-SISIYEREKYLCKFLCWPPFQLL 161 (191)
Q Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~~~ 161 (191)
..| ---+.++||.||..|..||-+-|
T Consensus 34 ~~pg~~LLs~~E~~LCs~lrL~P~~YL 60 (108)
T 2cuj_A 34 GLPGTEKLNEKEKELCQVVRLVPGAYL 60 (108)
T ss_dssp TSTTTTTSCHHHHHHHHHTTCCHHHHH
T ss_pred CCCCchhcCHHHHHHHHHhCCCHHHHH
Confidence 344 34678999999999999996543
No 7
>2lur_A Kalata; beta hairpin, plant protein; NMR {Synthetic}
Probab=19.21 E-value=40 Score=19.62 Aligned_cols=12 Identities=42% Similarity=1.237 Sum_probs=9.7
Q ss_pred CCCceeecccee
Q 029595 164 CPGCICDVSICL 175 (191)
Q Consensus 164 ~~~~~~~~~~~~ 175 (191)
-|||.|.-..|-
T Consensus 12 tpgc~cswpvcg 23 (29)
T 2lur_A 12 TPGCTCSWPVCG 23 (29)
T ss_dssp BTTBEEETTEEE
T ss_pred CCCcEecCcccc
Confidence 489999988774
No 8
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=19.21 E-value=34 Score=24.46 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHhhhcCCccccc
Q 029595 140 ISIYEREKYLCKFLCWPPFQLL 161 (191)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~ 161 (191)
--+.++||.||..|..||-+-|
T Consensus 21 ~lLs~~E~~LC~~lrL~P~~YL 42 (90)
T 2aqe_A 21 EKLNEKEKELCQVVRLVPGAYL 42 (90)
T ss_dssp TTSCHHHHHHHHHTTCCHHHHH
T ss_pred hhcCHHHHHHHHHhCCCHHHHH
Confidence 4578999999999999996543
No 9
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=16.54 E-value=34 Score=23.95 Aligned_cols=11 Identities=45% Similarity=1.337 Sum_probs=9.3
Q ss_pred Cceeeccceeh
Q 029595 166 GCICDVSICLD 176 (191)
Q Consensus 166 ~~~~~~~~~~~ 176 (191)
.||||+..|.+
T Consensus 33 ncicdiencsn 43 (80)
T 2lq4_p 33 NCICDIENCSN 43 (80)
T ss_dssp CSSCCCCCCCS
T ss_pred hhhcccccccc
Confidence 69999999963
No 10
>2fqa_A Violacin 1, violacin A; cystine knot, beta sheet, beta turns, plant protein; NMR {Viola odorata}
Probab=15.59 E-value=51 Score=19.17 Aligned_cols=10 Identities=40% Similarity=1.404 Sum_probs=8.6
Q ss_pred CCceeeccce
Q 029595 165 PGCICDVSIC 174 (191)
Q Consensus 165 ~~~~~~~~~~ 174 (191)
|||.|.-.+|
T Consensus 17 ~GCsC~~~vC 26 (27)
T 2fqa_A 17 PRCSCSYPVC 26 (27)
T ss_dssp TTEEEETTEE
T ss_pred CCceeCCccc
Confidence 6999988877
Done!