Query 029595
Match_columns 191
No_of_seqs 129 out of 387
Neff 4.6
Searched_HMMs 13730
Date Tue Mar 26 01:35:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029595.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029595hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rmka_ g.3.6.1 (A:) Conotoxin 35.8 6.3 0.00046 22.0 1.0 22 153-174 8-30 (31)
2 d1n1ua_ g.3.3.1 (A:) Kalata B1 31.7 7.1 0.00052 21.6 0.8 15 164-178 12-26 (29)
3 d2ezia_ a.4.1.2 (A:) Transposa 29.4 11 0.00083 24.2 1.7 27 131-157 20-46 (75)
4 d2v89a1 g.50.1.2 (A:1414-1487) 21.4 13 0.00095 24.5 0.8 12 161-172 4-15 (74)
5 d2a1ia1 c.52.1.20 (A:99-227) D 18.8 19 0.0014 26.1 1.3 24 101-127 96-119 (129)
6 d2cuja1 a.4.1.18 (A:8-108) Tra 18.8 17 0.0012 25.1 0.9 20 141-160 33-52 (101)
7 d1z60a1 g.49.1.2 (A:328-386) T 14.0 23 0.0017 22.5 0.6 10 159-168 50-59 (59)
8 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 12.4 46 0.0034 21.3 1.8 23 135-160 43-65 (80)
9 d1l8na2 d.92.2.2 (A:4-142) alp 9.5 43 0.0031 23.3 0.8 14 126-139 1-14 (139)
10 d1h41a2 d.92.2.2 (A:5-151) alp 8.9 38 0.0028 23.9 0.3 12 130-141 6-17 (147)
No 1
>d1rmka_ g.3.6.1 (A:) Conotoxin {Marble cone (Conus marmoreus), mrVIb [TaxId: 42752]}
Probab=35.84 E-value=6.3 Score=21.98 Aligned_cols=22 Identities=41% Similarity=1.209 Sum_probs=15.5
Q ss_pred hcCCc-ccccccCCCceeeccce
Q 029595 153 LCWPP-FQLLQCCPGCICDVSIC 174 (191)
Q Consensus 153 ~~~~~-~~~~~~~~~~~~~~~~~ 174 (191)
.|.-| ....-||||=||.--.|
T Consensus 8 ycivpi~gfiyccpglicgpfvc 30 (31)
T d1rmka_ 8 YCIVPILGFVYCCPGLICGPFVC 30 (31)
T ss_dssp CCCCCTTCCCEESTTCCBCSSSB
T ss_pred EEEeeeeeeeeeCCCccccceee
Confidence 34433 45578999999987666
No 2
>d1n1ua_ g.3.3.1 (A:) Kalata B1 {African plant (Oldenlandia affinis) [TaxId: 60225]}
Probab=31.70 E-value=7.1 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=12.2
Q ss_pred CCCceeeccceehhh
Q 029595 164 CPGCICDVSICLDQT 178 (191)
Q Consensus 164 ~~~~~~~~~~~~~~~ 178 (191)
-|||.|.-.||-...
T Consensus 12 tpgctcswpictrn~ 26 (29)
T d1n1ua_ 12 TPGATCSWPVCTRNG 26 (29)
T ss_dssp STTCEEETTEEEETT
T ss_pred CCCceeecceecccc
Confidence 389999999997654
No 3
>d2ezia_ a.4.1.2 (A:) Transposase {Bacteriophage mu [TaxId: 10677]}
Probab=29.39 E-value=11 Score=24.22 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=20.7
Q ss_pred eeeecCCCchhHHHHHHHHHhhhcCCc
Q 029595 131 WGNVTPKPSISIYEREKYLCKFLCWPP 157 (191)
Q Consensus 131 WLRYt~~~~~~~~~~~~~~~~~~~~~~ 157 (191)
||+-...+-..+|+|.+..|++.+|+|
T Consensus 20 YL~~~~ps~~~~y~~i~~~c~~~gl~~ 46 (75)
T d2ezia_ 20 YLRPEKPAFRKCYERLELAAREHGWSI 46 (75)
T ss_dssp HTSTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred HhCccCCCHHHHHHHHHHHHHHcCCCC
Confidence 344444445679999999999999987
No 4
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.39 E-value=13 Score=24.54 Aligned_cols=12 Identities=42% Similarity=1.351 Sum_probs=9.9
Q ss_pred cccCCCceeecc
Q 029595 161 LQCCPGCICDVS 172 (191)
Q Consensus 161 ~~~~~~~~~~~~ 172 (191)
..||+||.-|+.
T Consensus 4 i~Cc~~C~vd~N 15 (74)
T d2v89a1 4 ITCCPTCDVDIN 15 (74)
T ss_dssp SCCSTTCCCCTT
T ss_pred eEecCCcccCcc
Confidence 579999988864
No 5
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.80 E-value=19 Score=26.06 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=20.5
Q ss_pred eeeeeehhhhhhcccchhHHHHHhCCC
Q 029595 101 LCSKHHWSLSTLANLPQVHYVHSTISY 127 (191)
Q Consensus 101 ~~lllAWSitEIIRY~y~~Y~~~Llg~ 127 (191)
.++++|||.-|.-||-= +++....
T Consensus 96 ~TLilaws~eEaa~YlE---~~k~~e~ 119 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYLE---TYKAYEQ 119 (129)
T ss_dssp CEEEEESSHHHHHHHHH---HHHTCCS
T ss_pred CEEEEEcCHHHHHHHHH---HHHHhcC
Confidence 89999999999999977 6776654
No 6
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.76 E-value=17 Score=25.05 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhhhcCCcccc
Q 029595 141 SIYEREKYLCKFLCWPPFQL 160 (191)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~ 160 (191)
-+.++||.||..+..||-.-
T Consensus 33 lLs~~E~~LC~~lrL~P~~Y 52 (101)
T d2cuja1 33 KLNEKEKELCQVVRLVPGAY 52 (101)
T ss_dssp TSCHHHHHHHHHTTCCHHHH
T ss_pred hcCHHHHHHHHHhCCChHHH
Confidence 37899999999999999654
No 7
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.97 E-value=23 Score=22.49 Aligned_cols=10 Identities=60% Similarity=1.507 Sum_probs=7.0
Q ss_pred cccccCCCce
Q 029595 159 QLLQCCPGCI 168 (191)
Q Consensus 159 ~~~~~~~~~~ 168 (191)
+-|..||||+
T Consensus 50 e~lh~CpgCl 59 (59)
T d1z60a1 50 DSLHSCPGCI 59 (59)
T ss_dssp TTSCSSSTTC
T ss_pred hhhcCCCCCC
Confidence 3467788885
No 8
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.37 E-value=46 Score=21.34 Aligned_cols=23 Identities=13% Similarity=-0.077 Sum_probs=17.3
Q ss_pred cCCCchhHHHHHHHHHhhhcCCcccc
Q 029595 135 TPKPSISIYEREKYLCKFLCWPPFQL 160 (191)
Q Consensus 135 t~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (191)
+++||. ++.+-||++++.++-|+
T Consensus 43 ~~~p~~---~~~~~la~~~gl~~~~i 65 (80)
T d1wh7a_ 43 IQKHDD---VAVEQFCAETGVRRQVL 65 (80)
T ss_dssp CCSSTT---HHHHHHHHHSCCCHHHH
T ss_pred ccCcCH---HHHHHHHHHHCCCHHHe
Confidence 466765 55678999999998664
No 9
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.54 E-value=43 Score=23.32 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=10.6
Q ss_pred CCCcceeeecCCCc
Q 029595 126 SYRSTWGNVTPKPS 139 (191)
Q Consensus 126 g~~~tWLRYt~~~~ 139 (191)
|+++-||||.+.++
T Consensus 1 gy~~~WLrY~~~~~ 14 (139)
T d1l8na2 1 GYEPCWLRYERKDQ 14 (139)
T ss_dssp CCCCTTCCCCCCCT
T ss_pred CCcchhcCCCccch
Confidence 45567999998765
No 10
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=8.91 E-value=38 Score=23.94 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=9.5
Q ss_pred ceeeecCCCchh
Q 029595 130 TWGNVTPKPSIS 141 (191)
Q Consensus 130 tWLRYt~~~~~~ 141 (191)
-||||.+.++-.
T Consensus 6 ~WLrY~pi~~~~ 17 (147)
T d1h41a2 6 MWLRYQPIADQT 17 (147)
T ss_dssp TTCCCCCCSCHH
T ss_pred HhhCCCCCcchH
Confidence 699999988543
Done!