Query 029596
Match_columns 191
No_of_seqs 120 out of 242
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 01:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 8.3E-98 3E-102 623.5 17.5 187 1-190 1-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 5.1E-84 1.7E-88 543.5 15.7 185 3-190 1-190 (197)
3 3bwd_D RAC-like GTP-binding pr 39.2 65 0.0022 22.9 5.5 44 59-102 81-124 (182)
4 3reg_A RHO-like small GTPase; 37.8 71 0.0024 23.3 5.7 45 59-103 96-140 (194)
5 4gzl_A RAS-related C3 botulinu 37.3 66 0.0022 24.1 5.5 44 59-102 103-146 (204)
6 2cxc_A NUSA; transcription ter 36.7 1.3E+02 0.0043 23.5 7.2 100 60-182 37-136 (144)
7 1mh1_A RAC1; GTP-binding, GTPa 36.5 76 0.0026 22.5 5.5 43 59-101 78-120 (186)
8 2atx_A Small GTP binding prote 36.2 74 0.0025 23.2 5.5 44 59-102 91-134 (194)
9 2q3h_A RAS homolog gene family 35.5 77 0.0026 23.2 5.6 44 59-102 93-136 (201)
10 1qp6_A Protein (alpha2D); de n 31.8 11 0.00037 23.4 0.2 8 81-88 3-10 (35)
11 2j1l_A RHO-related GTP-binding 30.6 97 0.0033 23.3 5.5 45 58-102 106-150 (214)
12 2j0v_A RAC-like GTP-binding pr 30.0 1E+02 0.0036 22.8 5.5 44 59-102 82-125 (212)
13 2fv8_A H6, RHO-related GTP-bin 29.2 1.1E+02 0.0037 22.8 5.5 43 59-101 98-140 (207)
14 2gco_A H9, RHO-related GTP-bin 29.1 1.1E+02 0.0037 22.6 5.5 44 59-102 98-141 (201)
15 1m7b_A RND3/RHOE small GTP-bin 29.1 1.2E+02 0.0041 21.9 5.7 45 59-103 80-124 (184)
16 3h90_A Ferrous-iron efflux pum 26.9 2.6E+02 0.0088 22.8 9.0 72 14-96 202-276 (283)
17 1gwn_A RHO-related GTP-binding 25.1 1.4E+02 0.005 22.4 5.7 44 59-102 101-144 (205)
18 1qmv_A Human thioredoxin perox 24.2 1.4E+02 0.0047 22.4 5.3 47 50-97 25-73 (197)
19 1uul_A Tryparedoxin peroxidase 23.2 1.4E+02 0.0049 22.4 5.3 47 50-97 27-75 (202)
20 2zai_A Oligosaccharyl transfer 23.2 1E+02 0.0035 29.0 5.2 52 40-99 420-474 (497)
21 3q3j_B RHO-related GTP-binding 22.7 1.5E+02 0.0052 22.3 5.4 45 59-103 100-144 (214)
22 1zye_A Thioredoxin-dependent p 21.8 58 0.002 25.4 2.8 42 27-68 19-67 (220)
23 3p7i_A PHND, subunit of alkylp 20.8 38 0.0013 28.4 1.6 53 16-76 223-275 (321)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=8.3e-98 Score=623.52 Aligned_cols=187 Identities=49% Similarity=0.815 Sum_probs=178.5
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHHHHHH
Q 029596 1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRL 80 (191)
Q Consensus 1 m~~~~~Ki~k~~~~~p~e~E~~Vaqal~dLE~~~~dLK~~L~~l~i~~akei~v~~~kkAivIfVP~~~lk~f~Kiq~rL 80 (191)
|++.++||+|++ |||||.+|||||+|||++|+|||++|++|+|++||||||+||+||||||||||||++|||||.||
T Consensus 1 m~~~~~KI~k~~---p~e~E~~vaqal~dLE~~~~dLK~~Lr~L~i~~akEiev~~~kKAivIfVP~p~lk~f~KIq~rL 77 (190)
T 3u5c_H 1 MSAPQAKILSQA---PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKL 77 (190)
T ss_dssp ---CCSSTTCSS---CCSHHHHHHHHHHHHHCSHHHHTTSSSSCCCSCEEEEECTTSCEEEEEEECSSSHHHHHHHTHHH
T ss_pred CCccccccCCCC---CCHHHHHHHHHHHHHhhCcHHHHHhhhcceeeeEEEEEecCCcEEEEEEecHHHHHHHHHHHHHH
Confidence 665578999996 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeeecccCCCCCCC--ccccCCCcchhhhhHhhhhcccccceeeceeEEEeeCCceEEEEEeCcc
Q 029596 81 VRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPK 158 (191)
Q Consensus 81 v~ELEKKfsg~~Vv~vAqRrIl~kp~~~~--~q~RPRSRTLTaVhdaiLeDlV~P~eIVGKR~r~r~DGsk~~KV~LD~k 158 (191)
++||||||||+||||||||||||||++++ +|+|||||||||||||||||||||+|||||||||++|||+++|||||++
T Consensus 78 vrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~ 157 (190)
T 3u5c_H 78 TRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSK 157 (190)
T ss_dssp HHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSS
T ss_pred HHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHH
Confidence 99999999999999999999999998876 4999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHhhhcCCceEEECCCCC
Q 029596 159 ERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 190 (191)
Q Consensus 159 d~~~ve~Kldtfs~VYkkLTgk~v~FeFp~~~ 190 (191)
|||++|||||||++|||+||||||+||||+++
T Consensus 158 ~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 158 DVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp STHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred HhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 99999999999999999999999999999864
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=5.1e-84 Score=543.51 Aligned_cols=185 Identities=34% Similarity=0.576 Sum_probs=177.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEec-CC---eeEEEEEeehhhHHHHHHHHH
Q 029596 3 TTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVS-GN---RKAIVVYVPYRLRKAYRKIHS 78 (191)
Q Consensus 3 ~~~~Ki~k~~~~~p~e~E~~Vaqal~dLE~~~~dLK~~L~~l~i~~akei~v~-~~---kkAivIfVP~~~lk~f~Kiq~ 78 (191)
||++||+|+ .+|||||.+|||||+|||++++|||++|++|+|++||||||+ +| +||||||||+|++++|||||.
T Consensus 1 ~a~~ki~k~--~~p~e~E~~VaqaL~dLE~~~~dLK~~l~~l~i~~aKeiev~~~~~k~kkaivIfVP~~~lk~f~kiq~ 78 (197)
T 2xzm_3 1 MALAKFHKK--QSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKSAVLIYVHFQSYRVLLSAAR 78 (197)
T ss_dssp -CCTTCSSC--SCCCHHHHHHHHHHHHHHHHCSHHHHHHHHCCEEEEEEEEEECTTCCEEEEEEEEECGGGHHHHHHHHH
T ss_pred CCcccccCC--CCCCHHHHHHHHHHHHHHhcCHHHHHhhhhcceEEEEEEEecCCCCccceEEEEEEccchhhHHHHHHH
Confidence 367899999 799999999999999999888899999999999999999997 66 779999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEeeecccCCCCCC-CccccCCCcchhhhhHhhhhcccccceeeceeEEEeeCCceEEEEEeCc
Q 029596 79 RLVRELEKKFSGKDVVLIATRRIVRPPKKG-SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDP 157 (191)
Q Consensus 79 rLv~ELEKKfsg~~Vv~vAqRrIl~kp~~~-~~q~RPRSRTLTaVhdaiLeDlV~P~eIVGKR~r~r~DGsk~~KV~LD~ 157 (191)
||++|||||| |+||+|||||||+|+|+++ .+|+|||||||||||||||||||||+|||||||||++|||+++||+||+
T Consensus 79 rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~ 157 (197)
T 2xzm_3 79 KLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQ 157 (197)
T ss_dssp HHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHHHHHHSTTSCCSEEEEEECSSSCEECCEEEES
T ss_pred HHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHHHHHhccchheeeeEEEEecCCCEEEEEEeCH
Confidence 9999999999 8999999999999999775 5799999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHhhhcCCceEEECCCCC
Q 029596 158 KERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 190 (191)
Q Consensus 158 kd~~~ve~Kldtfs~VYkkLTgk~v~FeFp~~~ 190 (191)
+|++++|||+|+|++||++|||+||+||||+.+
T Consensus 158 ~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~ 190 (197)
T 2xzm_3 158 NDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK 190 (197)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred HHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence 999999999999999999999999999999764
No 3
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=39.22 E-value=65 Score=22.90 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=34.1
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...+..+++...++.++++|+...=+
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 124 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 46677677767788888877788899888778899999876433
No 4
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=37.77 E-value=71 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.291 Sum_probs=36.5
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
.++++.+-......|..+...+..+++...++.++++|+...=++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777778899988888889999888889999999875554
No 5
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=37.32 E-value=66 Score=24.11 Aligned_cols=44 Identities=7% Similarity=0.263 Sum_probs=36.1
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...+..++++..++.++++|+...=+
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 56777777777889998888889999998889999999986533
No 6
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=36.70 E-value=1.3e+02 Score=23.51 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=63.9
Q ss_pred EEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccCCCCCCCccccCCCcchhhhhHhhhhcccccceeece
Q 029596 60 AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGK 139 (191)
Q Consensus 60 AivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~kp~~~~~q~RPRSRTLTaVhdaiLeDlV~P~eIVGK 139 (191)
-+++.|+=-.+-+.--.....++.+.+.+ |..+=+|-.= - =-.......++|+++.+=
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~s-----------------~----d~~~fI~naLsPA~V~~V 94 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEYS-----------------S----DLERIVKNLFPGVKIESI 94 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEECC-----------------S----SHHHHHHHHSTTSCEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEcC-----------------C----CHHHHHHHhcCCceEEEE
Confidence 45555654445555444566677777777 8887665421 1 123455678899999887
Q ss_pred eEEEeeCCceEEEEEeCcccccchhhhhhhHHHHHhhhcCCce
Q 029596 140 RVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDV 182 (191)
Q Consensus 140 R~r~r~DGsk~~KV~LD~kd~~~ve~Kldtfs~VYkkLTgk~v 182 (191)
.+-.. ||++...|.+++.|....--|-..-...-.+|||..+
T Consensus 95 ~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~i 136 (144)
T 2cxc_A 95 NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLF 136 (144)
T ss_dssp EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCee
Confidence 66544 8999999999987765544444444455566666543
No 7
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=36.50 E-value=76 Score=22.52 Aligned_cols=43 Identities=7% Similarity=0.234 Sum_probs=33.2
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 101 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrI 101 (191)
.++++.+-......|..+...+..++....++.++++|+...=
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 120 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHH
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccc
Confidence 4666667766777888877778888888777889999988643
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=36.15 E-value=74 Score=23.17 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...++.++.+..++.++++|+...=+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45666666666778888877778888888778999999987543
No 9
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=35.46 E-value=77 Score=23.21 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...++.++....++.++++|+...=+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 46777777777788888877788888888888999999987544
No 10
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=31.81 E-value=11 Score=23.41 Aligned_cols=8 Identities=88% Similarity=1.182 Sum_probs=6.8
Q ss_pred HHHHHhhc
Q 029596 81 VRELEKKF 88 (191)
Q Consensus 81 v~ELEKKf 88 (191)
+.||||||
T Consensus 3 veelekkf 10 (35)
T 1qp6_A 3 VEELEKKF 10 (35)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 47899999
No 11
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=30.56 E-value=97 Score=23.33 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=34.6
Q ss_pred eeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 58 RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 58 kkAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
-.++++.+-.....+|..+...+..++....++.++++|+...=+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 346666666667788988887788889887788899999886543
No 12
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=29.96 E-value=1e+02 Score=22.76 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=33.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...++.++....++.++++|+...=+
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 46666666666778888877788899888788899999986544
No 13
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=29.23 E-value=1.1e+02 Score=22.81 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=33.0
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 101 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrI 101 (191)
.++++.+-......|..+...+..+++...++.++++|+...=
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 140 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 140 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchh
Confidence 4666666667777888886777888888777889999988743
No 14
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=29.09 E-value=1.1e+02 Score=22.65 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-......|..+...+..+++...++..+++|+...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 46666666667788888877788888887778899999887544
No 15
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=29.07 E-value=1.2e+02 Score=21.90 Aligned_cols=45 Identities=9% Similarity=0.226 Sum_probs=33.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
.++++.+-.....+|..+...+..++....++.++++|+...=++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 467777777777888887666778887777788999999875443
No 16
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=26.92 E-value=2.6e+02 Score=22.78 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehh---hHHHHHHHHHHHHHHHHhhcCC
Q 029596 14 AEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYR---LRKAYRKIHSRLVRELEKKFSG 90 (191)
Q Consensus 14 ~~p~e~E~~Vaqal~dLE~~~~dLK~~L~~l~i~~akei~v~~~kkAivIfVP~~---~lk~f~Kiq~rLv~ELEKKfsg 90 (191)
.+|.+..++|-+++.+.+. . ....++++ -..| ....+-+.|=++ .+...|+|..++-+.|+++|++
T Consensus 202 ~~~~~~~~~i~~~i~~~~~-V----~~v~~l~~-----~~~G-~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~ 270 (283)
T 3h90_A 202 ALPDEERQEIIDIVTSWPG-V----SGAHDLRT-----RQSG-PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG 270 (283)
T ss_dssp CCCHHHHHHHHHHHHHSSS-C----SEEEEEEE-----EEET-TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHhcCCC-c----ccceeeEE-----EEEC-CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3455677777777665541 1 12333333 1233 344444444333 3578899999999999999988
Q ss_pred CeEEEE
Q 029596 91 KDVVLI 96 (191)
Q Consensus 91 ~~Vv~v 96 (191)
.||.+=
T Consensus 271 ~~v~ih 276 (283)
T 3h90_A 271 SDVIIH 276 (283)
T ss_dssp CEEEEE
T ss_pred CeEEEE
Confidence 887653
No 17
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=25.13 E-value=1.4e+02 Score=22.44 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=33.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.++++.+-.....+|..+...+..++....++..+++|+...=+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 46666677777788888766777888877778899999987544
No 18
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=24.20 E-value=1.4e+02 Score=22.36 Aligned_cols=47 Identities=6% Similarity=0.130 Sum_probs=25.7
Q ss_pred EEEEecC--CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 029596 50 IQMDVSG--NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIA 97 (191)
Q Consensus 50 kei~v~~--~kkAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vA 97 (191)
+.+..+. ||..+|.|.|...-..++.... -+.+|-++|.++.|.||+
T Consensus 25 ~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~-~l~~l~~~~~~~~v~vv~ 73 (197)
T 1qmv_A 25 KEVKLSDYKGKYVVLFFYPLDFTFVAPTEII-AFSNRAEDFRKLGCEVLG 73 (197)
T ss_dssp EEEEGGGGTTSEEEEEECSCTTSSHHHHHHH-HHHHTHHHHHTTTEEEEE
T ss_pred cEEEHHHHCCCeEEEEEECCCCCCCCHHHHH-HHHHHHHHHHHCCCEEEE
Confidence 5666653 6778888887544444443222 234555566444454444
No 19
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=23.22 E-value=1.4e+02 Score=22.44 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=26.0
Q ss_pred EEEEecC--CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 029596 50 IQMDVSG--NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIA 97 (191)
Q Consensus 50 kei~v~~--~kkAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vA 97 (191)
+.+..+. ||-.+|.|.|...-..++... .-+.+|-++|.++.|.||+
T Consensus 27 ~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~-~~l~~l~~~~~~~~v~vi~ 75 (202)
T 1uul_A 27 KKVALTSYKGKWLVLFFYPMDFTFVCPTEI-CQFSDRVKEFSDIGCEVLA 75 (202)
T ss_dssp EEEEGGGGTTSEEEEEECSCTTCSHHHHHH-HHHHHTHHHHHTTTEEEEE
T ss_pred cEEEHHHhCCCeEEEEEECCCCCCcCHHHH-HHHHHHHHHHHHCCCEEEE
Confidence 5566543 677888888764444444322 2344566666444455554
No 20
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=23.21 E-value=1e+02 Score=29.00 Aligned_cols=52 Identities=15% Similarity=0.378 Sum_probs=39.7
Q ss_pred cCcceeeeeeEE-EEecCCeeEEEEEeehhh--HHHHHHHHHHHHHHHHhhcCCCeEEEEeee
Q 029596 40 DLKDLYINQAIQ-MDVSGNRKAIVVYVPYRL--RKAYRKIHSRLVRELEKKFSGKDVVLIATR 99 (191)
Q Consensus 40 ~L~~l~i~~ake-i~v~~~kkAivIfVP~~~--lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqR 99 (191)
++--+.|+-+|| |.+..|-.-|...+-+|. +.+| +.|||+|+ |-.|++.+.|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~ 474 (497)
T 2zai_A 420 QMDVFFITKIGENIQLKEGENTVKVRAELPEGVISSY-------KDELQRKY-GDKLIIRGIR 474 (497)
T ss_dssp EEEEEEEEEEEEEEEECSEEEEEEEEEECCTTHHHHH-------HHHHHHHH-GGGEEEEEEE
T ss_pred cceEEEEEeccccceeecCccEEEEEeeCchhHHHHH-------HHHHHHhh-CCEEEEEEee
Confidence 344477888999 999988889998888876 3444 57899999 5567777766
No 21
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=22.67 E-value=1.5e+02 Score=22.34 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=34.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
.++++.+-.....+|..+...+..++....++..+++|+...=++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777777888886667778888888889999999875443
No 22
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=21.84 E-value=58 Score=25.44 Aligned_cols=42 Identities=7% Similarity=0.134 Sum_probs=20.2
Q ss_pred hHhhhcCChHHHhcCcceeeee-----eEEEEecC--CeeEEEEEeehh
Q 029596 27 LFDLENTNQELKSDLKDLYINQ-----AIQMDVSG--NRKAIVVYVPYR 68 (191)
Q Consensus 27 l~dLE~~~~dLK~~L~~l~i~~-----akei~v~~--~kkAivIfVP~~ 68 (191)
-+.+++....+-..+.++.+.+ -+.+..+. ||..+|.|.|..
T Consensus 19 ~~~~~~~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~ 67 (220)
T 1zye_A 19 SHMLEDPAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLD 67 (220)
T ss_dssp --------CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCT
T ss_pred cccccCCcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCC
Confidence 3344432223334556666543 26666653 677888888643
No 23
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=20.75 E-value=38 Score=28.41 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHH
Q 029596 16 PTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKI 76 (191)
Q Consensus 16 p~e~E~~Vaqal~dLE~~~~dLK~~L~~l~i~~akei~v~~~kkAivIfVP~~~lk~f~Ki 76 (191)
|.++-..+.++|.++. .+++.++.|..+.+.+-...+-.. |.|++.|..|++.
T Consensus 223 ~~~l~~~l~~aL~~~~-~d~~~~~~l~~~g~~gf~~~~~~d-------y~~ir~l~~~~~~ 275 (321)
T 3p7i_A 223 SETTKDKIYDFFMNYG-KTPEEKAVLERLGWAPFRASSDLQ-------LVPIRQLALFKEM 275 (321)
T ss_dssp CHHHHHHHHHHHHHTT-CSHHHHHHHHHHTEEEEEECCGGG-------GHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCHHHHHHHHhcCcCCeeeCCHHH-------HHHHHHHHHHHHH
Confidence 6789999999999999 568898888888776665554443 6788888888664
Done!