Query 029596
Match_columns 191
No_of_seqs 120 out of 242
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 01:36:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bcgg2 c.3.1.3 (G:400-446) Gu 34.8 6.3 0.00046 24.7 1.0 24 162-185 21-44 (47)
2 d1mh1a_ c.37.1.8 (A:) Rac {Hum 34.8 36 0.0027 23.5 5.5 45 59-103 78-122 (183)
3 d1m7ba_ c.37.1.8 (A:) RhoE (RN 33.1 44 0.0032 23.2 5.8 44 59-102 75-118 (179)
4 d1z2aa1 c.37.1.8 (A:8-171) Rab 26.5 57 0.0041 21.9 5.2 42 59-101 76-117 (164)
5 d2atxa1 c.37.1.8 (A:9-193) Rho 24.1 72 0.0052 22.0 5.5 45 59-103 82-126 (185)
6 d2cu6a1 d.52.8.2 (A:6-96) Hypo 23.7 26 0.0019 23.2 2.8 70 19-93 2-72 (91)
7 d2bmea1 c.37.1.8 (A:6-179) Rab 22.8 80 0.0058 21.2 5.5 44 59-102 79-122 (174)
8 d1kmqa_ c.37.1.8 (A:) RhoA {Hu 21.9 86 0.0063 21.2 5.5 45 59-103 75-119 (177)
9 d2cx4a1 c.47.1.10 (A:4-163) Ba 19.2 51 0.0037 22.2 3.7 41 57-98 30-70 (160)
10 d2ngra_ c.37.1.8 (A:) CDC42 {H 17.3 1.2E+02 0.0087 20.8 5.5 44 59-102 76-119 (191)
No 1
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.85 E-value=6.3 Score=24.70 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.5
Q ss_pred chhhhhhhHHHHHhhhcCCceEEE
Q 029596 162 NTEYKLESFSGVYRKLTGKDVVFD 185 (191)
Q Consensus 162 ~ve~Kldtfs~VYkkLTgk~v~Fe 185 (191)
..|.-.+-...+|+++||++..|+
T Consensus 21 HFEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 21 HFESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp BSHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hhHHHHHHHHHHHHHhhCCcccee
Confidence 477778888899999999998875
No 2
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.82 E-value=36 Score=23.47 Aligned_cols=45 Identities=9% Similarity=0.271 Sum_probs=36.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
-++++.+=.....+|..+..++..+++..-++.++++|+...=+.
T Consensus 78 ~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 467777777788999999988899999888888999999876443
No 3
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.11 E-value=44 Score=23.17 Aligned_cols=44 Identities=7% Similarity=0.196 Sum_probs=37.9
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
-++++.+-+.-..+|+.+..++...++..-++-++++||...=+
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 57788888888899999999998999998889999999988644
No 4
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.47 E-value=57 Score=21.88 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRI 101 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrI 101 (191)
.++++.+-+....+|..++ .++.++.+..++.++++||.-.=
T Consensus 76 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~D 117 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKID 117 (164)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECGG
T ss_pred ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccCC
Confidence 4666777777788998876 56688888888999999987543
No 5
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.12 E-value=72 Score=21.99 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=35.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
-|+++.+=+....+|..+..+...+++...++.++++|+...=|+
T Consensus 82 ~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 126 (185)
T d2atxa1 82 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126 (185)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred ceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccc
Confidence 356665556777899999888899999888888999999886554
No 6
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=23.70 E-value=26 Score=23.19 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHHHhHhhhcCChHHHhcCcceeeeeeEEEEecCCeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCC-CeE
Q 029596 19 FEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSG-KDV 93 (191)
Q Consensus 19 ~E~~Vaqal~dLE~~~~dLK~~L~~l~i~~akei~v~~~kkAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg-~~V 93 (191)
+|.+|=+||-... .+++..++-+|-+. ++|++.+|+-.+.+-.|.+-......|+......|++ ++| ..|
T Consensus 2 le~~v~eaL~~V~--DPe~~~dIv~LGlV--~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~-l~gv~~V 72 (91)
T d2cu6a1 2 LEAQAWALLEAVY--DPELGLDVVNLGLI--YDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPGVEEV 72 (91)
T ss_dssp HHHHHHHHHTTCE--ETTTTEETTTTTCE--EEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STTCCEE
T ss_pred hHHHHHHHHhcCC--CCCCCcChhhccce--eEEEEeccccEEEEEcCCCCCcHHHHHHHHHHHHHHc-CCCCceE
Confidence 6889999998887 37777777777664 7888888888888888888887778888888888865 455 443
No 7
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.78 E-value=80 Score=21.22 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=34.8
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
.|+++.+-......|..++..+........++.+++++|.-.=+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 122 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence 47777777778899999888888877777778899988887544
No 8
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.91 E-value=86 Score=21.16 Aligned_cols=45 Identities=11% Similarity=0.260 Sum_probs=35.6
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeecccC
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVR 103 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl~ 103 (191)
.++++.+=+.-..+|..+..+....+++..++-+++++|...=++
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119 (177)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence 466666667778899988888888888887788999999875443
No 9
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=19.16 E-value=51 Score=22.19 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=27.0
Q ss_pred CeeEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEee
Q 029596 57 NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIAT 98 (191)
Q Consensus 57 ~kkAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAq 98 (191)
||..+++|+|-..-..+++ |..-+.++-.+|.+..+.+++-
T Consensus 30 gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 30 GRPAVLIFFPAAFSPVCTK-ELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp SSCEEEEECSCTTCHHHHH-HHHHHHHTCTTTSTTCCEEEEE
T ss_pred CCEEEEEecccccCCchhh-hhhhhhcccccccccccccccc
Confidence 6889999987655555654 5555566666776666555543
No 10
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.34 E-value=1.2e+02 Score=20.76 Aligned_cols=44 Identities=11% Similarity=0.237 Sum_probs=35.1
Q ss_pred eEEEEEeehhhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeccc
Q 029596 59 KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV 102 (191)
Q Consensus 59 kAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg~~Vv~vAqRrIl 102 (191)
-++++.+-+.-..+|+.+..++...++..-.+-++++|+...=|
T Consensus 76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl 119 (191)
T d2ngra_ 76 DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119 (191)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGG
T ss_pred ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 46677777778899999988888888877778889999887544
Done!