BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029597
MRPNGEPKRRKSTATRASSPSPSRRRGETTVRSATLLDNELATEEEISTLFTDLRISSAD
STANPRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILP
YSKGGKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVR
RGQDSGGCRIQ

High Scoring Gene Products

Symbol, full name Information P value
AT3G47490 protein from Arabidopsis thaliana 1.5e-60
AT1G18680 protein from Arabidopsis thaliana 3.5e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029597
        (191 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079137 - symbol:AT3G47490 species:3702 "Arabi...   620  1.5e-60   1
TAIR|locus:2035020 - symbol:AT1G18680 species:3702 "Arabi...   305  3.5e-27   1


>TAIR|locus:2079137 [details] [associations]
            symbol:AT3G47490 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002686
            GO:GO:0003676 GO:GO:0004519 InterPro:IPR003615 SMART:SM00507
            EMBL:AL132955 HOGENOM:HOG000005924 EMBL:BT029387 IPI:IPI00545660
            PIR:T45709 RefSeq:NP_190333.1 UniGene:At.35801
            ProteinModelPortal:Q9SN88 SMR:Q9SN88 PRIDE:Q9SN88
            EnsemblPlants:AT3G47490.1 GeneID:823903 KEGG:ath:AT3G47490
            TAIR:At3g47490 InParanoid:Q9SN88 OMA:LIELTAY PhylomeDB:Q9SN88
            ProtClustDB:CLSN2685175 ArrayExpress:Q9SN88 Genevestigator:Q9SN88
            Uniprot:Q9SN88
        Length = 234

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 117/159 (73%), Positives = 133/159 (83%)

Query:    33 SATLLDNELATEEEISTLFTDLRISSADSTANPRSFPYSVKQQCWEKAEKVRGRDPDRWR 92
             SATLLD E     E+  LF        D    PRSFPYSVKQQCWEKAEK++GRDP+RWR
Sbjct:    84 SATLLDRE-----EMG-LFPGS--GYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWR 135

Query:    93 KDALGNVVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSRS 152
             +D LGN+VFRKLVGCPGCLCHDYDHI+PYSKGGKSTLENCQVLQA VNRSKGN+T++SRS
Sbjct:   136 RDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRS 195

Query:   153 DLIQKSSYCRVSGRDMDLLELSAYGNVRRGQDSGGCRIQ 191
             +LIQ+SSYCRV+GRDMDL+EL+AYGNV+R   S GCRIQ
Sbjct:   196 ELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSGCRIQ 234


>TAIR|locus:2035020 [details] [associations]
            symbol:AT1G18680 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004519
            "endonuclease activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002711 Pfam:PF01844 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0003676 GO:GO:0004519
            InterPro:IPR003615 SMART:SM00507 EMBL:AC011809 EMBL:BT005697
            EMBL:AK118073 IPI:IPI00526222 PIR:E86320 RefSeq:NP_173303.1
            UniGene:At.41783 ProteinModelPortal:Q9M9T9 SMR:Q9M9T9
            EnsemblPlants:AT1G18680.1 GeneID:838449 KEGG:ath:AT1G18680
            TAIR:At1g18680 eggNOG:NOG312551 HOGENOM:HOG000005924
            InParanoid:Q9M9T9 OMA:AGNIVCK PhylomeDB:Q9M9T9
            ProtClustDB:CLSN2682415 ArrayExpress:Q9M9T9 Genevestigator:Q9M9T9
            Uniprot:Q9M9T9
        Length = 186

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/126 (44%), Positives = 81/126 (64%)

Query:    65 PRSFPYSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGCLCHDYDHILPYSKG 124
             PR F    K +CW  A+ V GR P+RWRKD  GN+V ++   C GCLC +YDHI+PYSKG
Sbjct:    40 PRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKG 99

Query:   125 GKSTLENCQVLQATVNRSKGNRTELSRSDLIQKSSYCRVSGRDMDLLELSAYGNVRR-GQ 183
             G+S  ENCQ+LQ  VNR K  +  +  + L   S   + + +++D++E++ YG+V R G+
Sbjct:   100 GESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDVLRPGK 159

Query:   184 DSGGCR 189
             +   CR
Sbjct:   160 E---CR 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      191       172   0.00093  108 3  11 22  0.44    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  160 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.81u 0.17s 15.98t   Elapsed:  00:00:01
  Total cpu time:  15.81u 0.17s 15.98t   Elapsed:  00:00:01
  Start:  Sat May 11 04:06:21 2013   End:  Sat May 11 04:06:22 2013

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