Query 029597
Match_columns 191
No_of_seqs 186 out of 1194
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 01:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qgp_A HNH endonuclease; Q39X4 99.4 3.1E-14 1E-18 108.4 -1.5 50 102-151 33-88 (112)
2 3m7k_A Restriction endonucleas 93.3 0.0092 3.2E-07 46.8 -1.3 22 128-149 101-122 (142)
3 1e7l_A GP49, recombination end 87.8 0.13 4.6E-06 41.1 0.7 44 99-145 15-67 (157)
4 7cei_B Protein (colicin E7 imm 85.0 0.35 1.2E-05 40.1 1.8 77 63-143 114-202 (206)
5 2jb0_B Colicin E7; hydrolase/i 73.8 0.43 1.5E-05 37.1 -1.1 73 63-143 39-127 (131)
6 1fr2_B Colicin E9; protein-pro 73.2 0.43 1.5E-05 37.2 -1.2 73 63-143 42-130 (134)
7 1wmh_B Partitioning defective- 11.5 54 0.0019 23.3 0.2 23 158-180 47-69 (86)
8 3ec1_A YQEH GTPase; atnos1, at 9.5 65 0.0022 27.7 0.0 40 105-147 5-50 (369)
9 6rxn_A Rubredoxin; electron tr 9.1 24 0.00081 22.3 -2.2 35 105-144 5-41 (46)
10 2pu3_A Endonuclease I; cold ad 9.1 29 0.00099 28.7 -2.3 35 113-147 59-117 (211)
No 1
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=99.36 E-value=3.1e-14 Score=108.43 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=45.0
Q ss_pred ccCCCCCCCCC------CCcceEEecCCCCCChHhhHHHHhHHHHhhhcCCCccch
Q 029597 102 RKLVGCPGCLC------HDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTELSR 151 (191)
Q Consensus 102 r~~~~C~~Cg~------~eVDHIiP~S~GG~d~~~NL~~LC~~CN~~K~n~~~~~~ 151 (191)
++++.|+|||. ++||||+|+|.||.++++||+++|..||..|+++++...
T Consensus 33 r~~~~C~yCg~~~~~~~~~vDHIiP~s~gG~~~~~Nl~~lC~~CN~~K~~~~~~e~ 88 (112)
T 2qgp_A 33 IARGICHYCGEIFPPEELTMDHLVPVVRGGKSTRGNVVPACKECNNRKKYLLPVEW 88 (112)
T ss_dssp HHHTBCTTTCCBCCGGGEEEEESSCTTTTCCCSTTTEEEEEHHHHHHHHTCCSHHH
T ss_pred HcCCcCCCCCCcCCCCCcEEEEEeehhcCCCCChhhChhhCHHHHHHHccCCHHHH
Confidence 55689999996 389999999999999999999999999999999988543
No 2
>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*
Probab=93.26 E-value=0.0092 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=19.9
Q ss_pred hHhhHHHHhHHHHhhhcCCCcc
Q 029597 128 TLENCQVLQATVNRSKGNRTEL 149 (191)
Q Consensus 128 ~~~NL~~LC~~CN~~K~n~~~~ 149 (191)
+.+||.++|..||+.|++.+..
T Consensus 101 s~dNLaLAC~~CNnaKsdk~ta 122 (142)
T 3m7k_A 101 SPQNARLACFICNRIKSNIFSA 122 (142)
T ss_dssp CTTTEEEECHHHHHHHTTTSCH
T ss_pred CHHHHHHHHHHHhccccccccc
Confidence 5789999999999999999864
No 3
>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*
Probab=87.83 E-value=0.13 Score=41.12 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=31.5
Q ss_pred hhhccCCCCCCCCCC--------CcceEEecCCCCCChHhhHH-HHhHHHHhhhcC
Q 029597 99 VVFRKLVGCPGCLCH--------DYDHILPYSKGGKSTLENCQ-VLQATVNRSKGN 145 (191)
Q Consensus 99 vl~r~~~~C~~Cg~~--------eVDHIiP~S~GG~d~~~NL~-~LC~~CN~~K~n 145 (191)
++..|++.|+.|+.. +|||..+.. |..+ .+.+ +||..||...|.
T Consensus 15 l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~-g~~t--G~VRGlLC~~CN~~lG~ 67 (157)
T 1e7l_A 15 FYDAQNGKCLICQRELNPDVQANHLDHDHELN-GPKA--GKVRGLLCNLCDAAEGQ 67 (157)
T ss_dssp HHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS-STTT--TBEEEEECHHHHHHHHH
T ss_pred HHHHhCCcCcccCCccccccccccccCCCCCC-CCCC--CcchhhccHhHhchhcc
Confidence 345677899999862 789998775 2221 2555 899999998654
No 4
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=84.98 E-value=0.35 Score=40.07 Aligned_cols=77 Identities=18% Similarity=0.289 Sum_probs=46.4
Q ss_pred CCCCCCC--HHHHHHHHHhcccccCCCCcchhhhcccchhhccCCCCCCC------C---CCCcceEEecCCCCCC-hHh
Q 029597 63 ANPRSFP--YSVKQQCWEKAEKVRGRDPDRWRKDALGNVVFRKLVGCPGC------L---CHDYDHILPYSKGGKS-TLE 130 (191)
Q Consensus 63 ~~~r~f~--~~~k~~~W~~~~~~~g~dp~r~R~d~~gnvl~r~~~~C~~C------g---~~eVDHIiP~S~GG~d-~~~ 130 (191)
...|.|. ..+|.++|..-. -||+....=.-.|.-.-..+.-++- | .+++||+.|++.||.- +++
T Consensus 114 LRGR~F~sFD~FR~AFWkeVa----~DPeLskQF~~~N~~~Mk~G~AP~ap~~e~vG~R~kfELHH~~~I~~GG~VYDiD 189 (206)
T 7cei_B 114 LRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDMD 189 (206)
T ss_dssp HTTCBCSSHHHHHHHHHHHHT----TCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCSSSSCCSSBTT
T ss_pred hcCCcCCCHHHHHHHHHHHHc----cCHHHHHHHhHHHHHHHHCCCCCCCChhhhcCCeeeEEeecCcccccCCeeeccc
Confidence 4566676 789999997532 2232222111112211112232322 2 2699999999999985 899
Q ss_pred hHHHHhHHHHhhh
Q 029597 131 NCQVLQATVNRSK 143 (191)
Q Consensus 131 NL~~LC~~CN~~K 143 (191)
||+++-+.-|..-
T Consensus 190 NLrI~TPK~Hiei 202 (206)
T 7cei_B 190 NISVVTPKRHIDI 202 (206)
T ss_dssp SEEEECHHHHHHT
T ss_pred ceeecChHHHHhh
Confidence 9999888777653
No 5
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=73.83 E-value=0.43 Score=37.12 Aligned_cols=73 Identities=15% Similarity=0.254 Sum_probs=43.6
Q ss_pred CCCCCCCH--HHHHHHHHhcc----cccCCCCcchhhhcccchhhccCCCCCC------CC---CCCcceEEecCCCCC-
Q 029597 63 ANPRSFPY--SVKQQCWEKAE----KVRGRDPDRWRKDALGNVVFRKLVGCPG------CL---CHDYDHILPYSKGGK- 126 (191)
Q Consensus 63 ~~~r~f~~--~~k~~~W~~~~----~~~g~dp~r~R~d~~gnvl~r~~~~C~~------Cg---~~eVDHIiP~S~GG~- 126 (191)
...|.|.. ++|+++|..-. .+.-|.++-...- ..+.-++ -| .+++||+.|++.||.
T Consensus 39 LRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~N~~rm--------k~G~aP~~~~~e~vG~r~kfelHH~~~I~~GG~V 110 (131)
T 2jb0_B 39 LRDKEFKSFDDFRKKFWEEVSKDPELSKQFSRNNNDRM--------KVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGV 110 (131)
T ss_dssp HTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHHHHHHH--------HTTCCCBCCGGGCBTTBCBCEEEESSCCC--CCS
T ss_pred HcCCcCCCHHHHHHHHHHHHhcCHHHHHHhhHHHHHHH--------HCCCCCCCCchhhcCCeeEEEEEeechhhcCCee
Confidence 45567774 89999996432 1133433211111 1122222 12 269999999999998
Q ss_pred ChHhhHHHHhHHHHhhh
Q 029597 127 STLENCQVLQATVNRSK 143 (191)
Q Consensus 127 d~~~NL~~LC~~CN~~K 143 (191)
-+++||.++-..-|...
T Consensus 111 YdlDNL~i~TPk~Hi~i 127 (131)
T 2jb0_B 111 YDMDNISVVTPKRHIDI 127 (131)
T ss_dssp SBGGGEEEECHHHHHHC
T ss_pred eeeeeEEEcCcchhhhh
Confidence 69999999888776543
No 6
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=73.22 E-value=0.43 Score=37.23 Aligned_cols=73 Identities=18% Similarity=0.250 Sum_probs=45.6
Q ss_pred CCCCCCCH--HHHHHHHHhcc----cccCCCCcchhhhcccchhhccCCCCCC------CC---CCCcceEEecCCCCC-
Q 029597 63 ANPRSFPY--SVKQQCWEKAE----KVRGRDPDRWRKDALGNVVFRKLVGCPG------CL---CHDYDHILPYSKGGK- 126 (191)
Q Consensus 63 ~~~r~f~~--~~k~~~W~~~~----~~~g~dp~r~R~d~~gnvl~r~~~~C~~------Cg---~~eVDHIiP~S~GG~- 126 (191)
...|.|.. ++|+++|..-. .+.-|.+. |.-.-..+.-++ -| .+++||+.|++.||.
T Consensus 42 LRGr~F~sFd~FR~afW~eVs~DpeL~~QF~~~--------N~~rmk~G~aP~~~~~e~vG~r~kfelHH~~~I~~GG~V 113 (134)
T 1fr2_B 42 LRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPS--------NKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEV 113 (134)
T ss_dssp HTTCEESSHHHHHHHHHHHHHHCHHHHTTSCHH--------HHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCGGGTCCS
T ss_pred hcCCcCCCHHHHHHHHHHHHhcCHHHHHHhCHH--------HHHHHHCCCCCCCcchhhcCCeeEEEEEecchhhcCCee
Confidence 45567774 89999996432 11333332 111111222232 12 269999999999998
Q ss_pred ChHhhHHHHhHHHHhhh
Q 029597 127 STLENCQVLQATVNRSK 143 (191)
Q Consensus 127 d~~~NL~~LC~~CN~~K 143 (191)
-+++||.++-..-|...
T Consensus 114 YdlDNL~i~TPk~Hi~i 130 (134)
T 1fr2_B 114 YDMDNIRVTTPKRHIDI 130 (134)
T ss_dssp SBGGGEEEECHHHHHHH
T ss_pred eeeecEEEcCccccccc
Confidence 69999999888776553
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=11.55 E-value=54 Score=23.35 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=16.9
Q ss_pred cCCccccCcccceeccccccccc
Q 029597 158 SSYCRVSGRDMDLLELSAYGNVR 180 (191)
Q Consensus 158 s~~~~~~~~~~d~i~~~~~~~~~ 180 (191)
+..+.++++|.|+|.++==-|..
T Consensus 47 ~f~i~Y~D~dGDLlpInnDdnl~ 69 (86)
T 1wmh_B 47 DVLLGYTDAHGDLLPLTNDDSLH 69 (86)
T ss_dssp CCEEEEECTTSCEEECCSHHHHH
T ss_pred CEEEEEECCCCCEeeecCHHHHH
Confidence 45678999999999987433333
No 8
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=9.51 E-value=65 Score=27.68 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCCCCCCCC--CcceEEecCCC--CCChHhhH--HHHhHHHHhhhcCCC
Q 029597 105 VGCPGCLCH--DYDHILPYSKG--GKSTLENC--QVLQATVNRSKGNRT 147 (191)
Q Consensus 105 ~~C~~Cg~~--eVDHIiP~S~G--G~d~~~NL--~~LC~~CN~~K~n~~ 147 (191)
-.|.-||+. .-|.-.| | ....+++- .++|..||..++...
T Consensus 5 ~~C~gcG~~lq~~~~~~~---gy~p~~~~~~~~~~~~C~RC~~l~hy~~ 50 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNA---GYAPKSVLEKDAEEVICQRCFRLKHYNE 50 (369)
T ss_dssp -------------------------------------------------
T ss_pred ceeCCCCceeecCCCCCC---CCCChHHhcCCCCCEEchhHHHhhcccc
Confidence 368999873 2222222 1 01122333 799999999887543
No 9
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=9.14 E-value=24 Score=22.29 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=18.5
Q ss_pred CCCCCCCCCCcceEEecCCCCCChHhhHHH--HhHHHHhhhc
Q 029597 105 VGCPGCLCHDYDHILPYSKGGKSTLENCQV--LQATVNRSKG 144 (191)
Q Consensus 105 ~~C~~Cg~~eVDHIiP~S~GG~d~~~NL~~--LC~~CN~~K~ 144 (191)
+.|..|| +|.--+.|..+.++.|-- .|..|...|.
T Consensus 5 y~C~vCG-----yvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 5 YVCNVCG-----YEYDPAEHDNVPFDQLPDDWCCPVCGVSKD 41 (46)
T ss_dssp EEETTTC-----CEECGGGGTTCCGGGSCTTCBCTTTCCBGG
T ss_pred EECCCCC-----eEEeCCcCCCcchhhCCCCCcCcCCCCcHH
Confidence 4667776 343333454455555433 5666665554
No 10
>2pu3_A Endonuclease I; cold adaptation, salt adaptation, psychrophilic enzymes, END I, hydrolase; 1.50A {Vibrio salmonicida} PDB: 1ouo_A 1oup_A 2ivk_A 2vnd_A 2g7e_A 2g7f_A
Probab=9.14 E-value=29 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCcceEEecCCCCCC------------------------hHhhHHHHhHHHHhhhcCCC
Q 029597 113 HDYDHILPYSKGGKS------------------------TLENCQVLQATVNRSKGNRT 147 (191)
Q Consensus 113 ~eVDHIiP~S~GG~d------------------------~~~NL~~LC~~CN~~K~n~~ 147 (191)
++..||+|.|..|.. ++.||.++=..+|...+|.-
T Consensus 59 in~EHvvP~s~fg~~~~cw~~gGrk~c~~~d~~~~~m~sDlHnL~Pad~~vNs~RsN~~ 117 (211)
T 2pu3_A 59 IEWEHVVPAWQFGHQRQCWQKGGRKNCTRNDKQFKSMEADLHNLVPAIGEVNGDRSNFR 117 (211)
T ss_dssp EEEEESSCHHHHHTTSHHHHTTHHHHHHHHCHHHHHHHHCGGGEEEEEHHHHHHHTTCE
T ss_pred CccceeecHHHcCccchhhcccchhhccccCcccCcccccccceecccchhhcCCCCCC
Confidence 366799998864322 45588888888888888854
Done!