Query 029598
Match_columns 191
No_of_seqs 176 out of 1483
Neff 8.2
Searched_HMMs 29240
Date Tue Mar 26 01:40:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.7E-33 5.8E-38 234.3 16.9 159 3-167 107-272 (306)
2 1f5q_B Gamma herpesvirus cycli 100.0 2E-33 6.7E-38 228.0 15.3 156 3-164 85-244 (252)
3 1g3n_C V-cyclin; cyclin-depend 100.0 8.4E-32 2.9E-36 219.0 18.4 155 4-164 88-250 (257)
4 2f2c_A Cyclin homolog, V-cycli 100.0 6.9E-32 2.3E-36 219.2 17.4 154 4-164 89-250 (254)
5 2b9r_A Human cyclin B1; cell c 100.0 1.3E-31 4.6E-36 219.2 14.1 170 4-187 75-246 (269)
6 2cch_B Cyclin A2, cyclin-A; co 100.0 1.9E-31 6.4E-36 217.3 13.7 169 4-187 76-247 (260)
7 2w96_A G1/S-specific cyclin-D1 100.0 6.9E-31 2.4E-35 215.1 15.7 157 4-166 94-261 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 1.6E-30 5.4E-35 214.3 17.6 153 4-164 88-244 (283)
9 3rgf_B Cyclin-C; protein kinas 100.0 1.8E-27 6.2E-32 196.2 15.6 153 4-164 80-244 (285)
10 1zp2_A RNA polymerase II holoe 100.0 1.8E-27 6.2E-32 191.0 14.6 149 7-163 69-221 (235)
11 2ivx_A Cyclin-T2; transcriptio 99.9 4.2E-27 1.4E-31 191.1 14.2 151 4-162 68-240 (257)
12 2i53_A Cyclin K; cell cycle, t 99.9 2.2E-27 7.6E-32 192.7 12.2 156 4-163 78-252 (258)
13 2pk2_A Cyclin-T1, protein TAT; 99.9 4E-26 1.4E-30 193.5 6.7 152 4-163 75-248 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.9 1.1E-24 3.8E-29 182.4 14.6 158 4-163 96-262 (323)
15 1c9b_A General transcription f 99.9 3.3E-21 1.1E-25 151.6 16.4 146 5-163 43-190 (207)
16 1ais_B TFB TFIIB, protein (tra 99.8 1.1E-17 3.7E-22 130.7 15.8 144 5-161 47-194 (200)
17 3k7a_M Transcription initiatio 99.5 6.8E-16 2.3E-20 130.1 1.1 146 5-163 164-323 (345)
18 4bbr_M Transcription initiatio 98.9 5.8E-10 2E-14 93.8 4.5 146 6-164 165-324 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 97.2 0.00093 3.2E-08 54.5 7.3 71 6-82 116-186 (293)
20 1ais_B TFB TFIIB, protein (tra 95.9 0.054 1.9E-06 41.2 9.1 86 69-161 11-98 (200)
21 1c9b_A General transcription f 94.9 0.15 5.1E-06 38.9 8.7 85 70-161 8-94 (207)
22 4bbr_M Transcription initiatio 91.5 1.2 4E-05 37.0 9.3 87 68-161 127-215 (345)
23 1zp2_A RNA polymerase II holoe 91.0 1.4 4.6E-05 34.2 8.8 82 72-160 33-125 (235)
24 3k7a_M Transcription initiatio 90.4 0.36 1.2E-05 40.0 5.2 85 70-161 129-215 (345)
25 1jkw_A Cyclin H; cell cycle, c 76.1 19 0.00064 29.2 9.3 38 93-130 78-115 (323)
26 2ivx_A Cyclin-T2; transcriptio 75.8 6.9 0.00024 30.4 6.5 53 71-130 35-87 (257)
27 2i53_A Cyclin K; cell cycle, t 73.4 8.7 0.0003 29.8 6.5 53 71-130 45-97 (258)
28 3rgf_B Cyclin-C; protein kinas 72.0 7.3 0.00025 31.0 5.8 38 93-130 62-99 (285)
29 2pk2_A Cyclin-T1, protein TAT; 70.8 7.4 0.00025 32.2 5.7 37 93-129 57-93 (358)
30 2b9r_A Human cyclin B1; cell c 66.4 32 0.0011 26.9 8.4 66 94-160 58-129 (269)
31 2w96_A G1/S-specific cyclin-D1 66.2 40 0.0014 26.3 9.0 66 94-160 77-148 (271)
32 2cch_B Cyclin A2, cyclin-A; co 56.6 36 0.0012 26.4 7.0 64 97-160 62-130 (260)
33 2f2c_A Cyclin homolog, V-cycli 54.9 65 0.0022 24.8 8.3 66 94-160 72-143 (254)
34 2wh0_Q Pkcev3, protein kinase 52.2 12 0.0004 18.9 2.2 18 47-64 12-29 (31)
35 1g3n_C V-cyclin; cyclin-depend 51.7 56 0.0019 25.1 7.5 65 95-160 72-142 (257)
36 3g33_B CCND3 protein; Ser/Thr 44.5 73 0.0025 25.4 7.2 66 95-160 92-162 (306)
37 1w98_B Cyclin E, G1/S-specific 39.7 96 0.0033 24.3 7.1 64 97-161 73-143 (283)
38 3h4c_A Transcription factor TF 31.5 73 0.0025 24.5 4.8 70 8-84 56-130 (260)
39 3m03_A ORC6, origin recognitio 21.5 1.8E+02 0.0062 19.1 5.3 49 113-162 42-93 (95)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=234.33 Aligned_cols=159 Identities=25% Similarity=0.337 Sum_probs=132.6
Q ss_pred CCCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhc
Q 029598 3 PGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKIS 82 (191)
Q Consensus 3 ~~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 82 (191)
..+++++||+|+||||||+|+||..+|.+.+++.++ ++.|++++|++||+.||++|+|+++.|||++|+.+|+..++
T Consensus 107 ~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~---~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~ 183 (306)
T 3g33_B 107 PTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYT---DHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS 183 (306)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHT---TTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred CCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHh---ccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence 346789999999999999999999888999999887 79999999999999999999999999999999999999886
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCc----hhhhH---HhhcCCHhhHHHHHHH
Q 029598 83 CFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDE----QNLGC---FHKRLNKDMVRRCYNL 155 (191)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~----~~~~~---~~~~~~~~~l~~C~~~ 155 (191)
.... ....+.+.+++++..++.++.|+.|+||+||+|||++|.+.+... .+++. ..+|++.++|++|++.
T Consensus 184 ~~~~---~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~ 260 (306)
T 3g33_B 184 LPRD---RQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQ 260 (306)
T ss_dssp CCTT---THHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CChh---HHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHH
Confidence 6532 233455667788888999999999999999999999997654321 12222 4589999999999999
Q ss_pred HHHHHhhhcccC
Q 029598 156 IRKNRSQLLHIN 167 (191)
Q Consensus 156 m~~~~~~~~~~~ 167 (191)
|.+++.+..+..
T Consensus 261 I~~l~~~~l~~~ 272 (306)
T 3g33_B 261 IEAALRESLREA 272 (306)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHHHHHH
Confidence 999998877543
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2e-33 Score=228.04 Aligned_cols=156 Identities=12% Similarity=0.131 Sum_probs=130.0
Q ss_pred CCCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhc
Q 029598 3 PGKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKIS 82 (191)
Q Consensus 3 ~~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 82 (191)
+.++.++||+|+||||||+|+||..+|.+.+++.++ ++.|++++|++||+.||++|+|+++.|||++|+++|++.++
T Consensus 85 ~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~---~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~ 161 (252)
T 1f5q_B 85 RIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLC---GGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMH 161 (252)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH---CTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcC
Confidence 356789999999999999999999989999999877 79999999999999999999999999999999999999876
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCch-h---hhHHhhcCCHhhHHHHHHHHHH
Q 029598 83 CFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQ-N---LGCFHKRLNKDMVRRCYNLIRK 158 (191)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~-~---~~~~~~~~~~~~l~~C~~~m~~ 158 (191)
.... ....+...+.+++..++.|+.|+.|+||+||+||+.+++....++. . .....+|++.+++.+|++.|.+
T Consensus 162 ~~~~---~~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 162 APRE---DYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYDYYENRIDGVCKSLYITKEELHQCCDLVDI 238 (252)
T ss_dssp CCHH---HHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcc---hHHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5421 1223455677777888899999999999999999888765433221 1 1224689999999999999999
Q ss_pred HHhhhc
Q 029598 159 NRSQLL 164 (191)
Q Consensus 159 ~~~~~~ 164 (191)
++....
T Consensus 239 ~l~~~~ 244 (252)
T 1f5q_B 239 AIVSFD 244 (252)
T ss_dssp HHHHCC
T ss_pred HHHHhC
Confidence 996653
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.4e-32 Score=219.00 Aligned_cols=155 Identities=16% Similarity=0.085 Sum_probs=130.9
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.++.++||+|+||||||||+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.
T Consensus 88 v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~---~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~ 164 (257)
T 1g3n_C 88 VSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAA---ADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLLLKLVG 164 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT---TTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHH---CCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 46788999999999999999999899999999887 789999999999999999999999999999999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-Cc---hhhh-H---HhhcCCHhhHHHHHHH
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-DE---QNLG-C---FHKRLNKDMVRRCYNL 155 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~~---~~~~-~---~~~~~~~~~l~~C~~~ 155 (191)
... ....+...+++++..++.++.|++|+||+||+|||++|..... +. .+.| . ..+|++.++|++|++.
T Consensus 165 ~~~---~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~ 241 (257)
T 1g3n_C 165 GSQ---HLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQ 241 (257)
T ss_dssp SST---THHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHH
T ss_pred Chh---HHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHH
Confidence 432 2233455677888889999999999999999999999965442 11 1223 2 4589999999999999
Q ss_pred HHHHHhhhc
Q 029598 156 IRKNRSQLL 164 (191)
Q Consensus 156 m~~~~~~~~ 164 (191)
|.+++....
T Consensus 242 i~~l~~~~~ 250 (257)
T 1g3n_C 242 ILTSVSDFD 250 (257)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHCC
Confidence 999997653
No 4
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=6.9e-32 Score=219.17 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=128.3
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.++.++||+|+||||||+|+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|+++.|||++|+.+|++.++.
T Consensus 89 v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~---~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~ 165 (254)
T 2f2c_A 89 GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLS---CDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCNALKI 165 (254)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC------CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHHTTC
T ss_pred cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHh---CCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHHcCC
Confidence 46778999999999999999999899999998876 789999999999999999999999999999999999998875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhh-h-------HHhhcCCHhhHHHHHHH
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNL-G-------CFHKRLNKDMVRRCYNL 155 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~C~~~ 155 (191)
... ....+...+.+++..++.++.|++|+||+||+||+++|.+.. +..+. | ...+|++.++|++|++.
T Consensus 166 ~~~---~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~-~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~ 241 (254)
T 2f2c_A 166 PED---LWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETD-NTNCRPWTCYLEDLSSILNFSTNTVRTVKDQ 241 (254)
T ss_dssp CGG---GHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTT-CCSSCCTHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred Chh---hHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhc-CCCCCChHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 432 222345567788888999999999999999999999997653 22221 2 24689999999999999
Q ss_pred HHHHHhhhc
Q 029598 156 IRKNRSQLL 164 (191)
Q Consensus 156 m~~~~~~~~ 164 (191)
|.+++.+..
T Consensus 242 i~~~~~~~~ 250 (254)
T 2f2c_A 242 VSEAFSLYD 250 (254)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhCC
Confidence 999987653
No 5
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.97 E-value=1.3e-31 Score=219.19 Aligned_cols=170 Identities=18% Similarity=0.163 Sum_probs=140.1
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.++.++|++|+||||||||+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|+++.|||++|+.+|+...+.
T Consensus 75 v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~---~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~ 151 (269)
T 2b9r_A 75 VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVT---DNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEV 151 (269)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT---CSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCC
T ss_pred CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCC
Confidence 45678999999999999999999889999999887 789999999999999999999999999999999999987654
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC--CchhhhHHhhcCCHhhHHHHHHHHHHHHh
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV--DEQNLGCFHKRLNKDMVRRCYNLIRKNRS 161 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~--~~~~~~~~~~~~~~~~l~~C~~~m~~~~~ 161 (191)
+. .+...+++++..++.++.|++|+||.||+|||++|.+... ++.+.....+|+++++|++|++.|.+++.
T Consensus 152 ~~-------~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~ 224 (269)
T 2b9r_A 152 DV-------EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVV 224 (269)
T ss_dssp CH-------HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHH
T ss_pred CH-------HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 32 3555677888889999999999999999999999965432 23333346789999999999999999886
Q ss_pred hhcccCCCCCCcccccccccccccCC
Q 029598 162 QLLHINSVQKPEHVAVNDKLKVVFGG 187 (191)
Q Consensus 162 ~~~~~~~~~~p~~~~~~~~~~~~~~~ 187 (191)
.... +...+.++.+||++...+
T Consensus 225 ~~~~----~~~~~~ai~~Ky~~~~~~ 246 (269)
T 2b9r_A 225 MVNQ----GLTKHMTVKNKYATSKHA 246 (269)
T ss_dssp HTTT----SCCSCCHHHHHTTSGGGT
T ss_pred HhcC----CCcchHHHHHHhcchhhC
Confidence 6422 112445777777766544
No 6
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.97 E-value=1.9e-31 Score=217.29 Aligned_cols=169 Identities=21% Similarity=0.157 Sum_probs=138.5
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
-++.++|++|+||||||+|+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|+++.|||++|+.+|+..++.
T Consensus 76 v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~---~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~ 152 (260)
T 2cch_B 76 VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYIT---DDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQP 152 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT---TSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSS
T ss_pred CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHH---cCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 35678999999999999999999889999999887 689999999999999999999999999999999999998875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcccc-ccccChHHHHHHHHHHHhcccC--CchhhhHHhhcCCHhhHHHHHHHHHHHH
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVID-FLACPPSTIAAAVVLWATDHSV--DEQNLGCFHKRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-f~~~~PS~iAaa~i~~a~~~~~--~~~~~~~~~~~~~~~~l~~C~~~m~~~~ 160 (191)
.+ ..+...+++++..++.++. |++|+||.||+|||++|.+... .+.+.....+|+++++|++|++.|.+++
T Consensus 153 ~~------~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~ 226 (260)
T 2cch_B 153 AN------CKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTY 226 (260)
T ss_dssp CC------HHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred Ch------HHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 43 1355567777777888998 9999999999999999965432 2223334578999999999999999998
Q ss_pred hhhcccCCCCCCcccccccccccccCC
Q 029598 161 SQLLHINSVQKPEHVAVNDKLKVVFGG 187 (191)
Q Consensus 161 ~~~~~~~~~~~p~~~~~~~~~~~~~~~ 187 (191)
..... ....++.+||++...+
T Consensus 227 ~~~~~------~~~~~i~~Ky~~~~~~ 247 (260)
T 2cch_B 227 LKAPQ------HAQQSIREKYKNSKYH 247 (260)
T ss_dssp HHGGG------SSCCHHHHHHTSGGGT
T ss_pred HhcCC------cchHHHHHHHCccccc
Confidence 65321 2234677777766544
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.97 E-value=6.9e-31 Score=215.11 Aligned_cols=157 Identities=28% Similarity=0.393 Sum_probs=130.0
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.++.++|++|+||||||+|+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.
T Consensus 94 v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~---~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~ 170 (271)
T 2w96_A 94 VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYT---DNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPE 170 (271)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHT---TTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHh---cCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCC
Confidence 35668999999999999999999888999998876 789999999999999999999999999999999999998865
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC---Cchhhh--------HHhhcCCHhhHHHH
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV---DEQNLG--------CFHKRLNKDMVRRC 152 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~---~~~~~~--------~~~~~~~~~~l~~C 152 (191)
..+ ....+.+.+++++..++.|+.|++|+||+||+|||++|....- +..+.| ...+|++.++|++|
T Consensus 171 ~~~---~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c 247 (271)
T 2w96_A 171 AEE---NKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247 (271)
T ss_dssp CHH---HHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHH
T ss_pred Cch---HHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHH
Confidence 431 1112345677888888889999999999999999999965431 111222 13589999999999
Q ss_pred HHHHHHHHhhhccc
Q 029598 153 YNLIRKNRSQLLHI 166 (191)
Q Consensus 153 ~~~m~~~~~~~~~~ 166 (191)
++.|.+++....+.
T Consensus 248 ~~~i~~l~~~~~~~ 261 (271)
T 2w96_A 248 QEQIEALLESSLRQ 261 (271)
T ss_dssp HHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876654
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1.6e-30 Score=214.28 Aligned_cols=153 Identities=19% Similarity=0.227 Sum_probs=129.9
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.+++++||+|+||||||+|+||..+|.+.+++.++ ++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~---~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~ 164 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVT---DGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYL 164 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTT---TTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHH---cCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999889999999877 789999999999999999999999999999999999998765
Q ss_pred CCCCC----CCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhhhHHhhcCCHhhHHHHHHHHHHH
Q 029598 84 FNPQR----DGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNLGCFHKRLNKDMVRRCYNLIRKN 159 (191)
Q Consensus 84 ~~~~~----~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~~~~~~~~~~~~l~~C~~~m~~~ 159 (191)
.+... .........+.+++..++.|+.|++|+||+||+|||++|.. .+.+...+|+++++|++|++.|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~~-----~~~l~~~tg~~~~~i~~c~~~l~~~ 239 (283)
T 1w98_B 165 NDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFSS-----SELMQKVSGYQWCDIENCVKWMVPF 239 (283)
T ss_dssp CSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTSC-----HHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHC-----hHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 43221 11122333466777788889999999999999999999842 4556677999999999999999999
Q ss_pred Hhhhc
Q 029598 160 RSQLL 164 (191)
Q Consensus 160 ~~~~~ 164 (191)
+....
T Consensus 240 ~~~~~ 244 (283)
T 1w98_B 240 AMVIR 244 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 9
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=196.15 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=128.4
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhc-----------cCCCCccCHHHHHHHHHHHHHHcCceeccCChHH
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIE-----------PSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFD 72 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~-----------~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~ 72 (191)
-++.++|+||+||||||||+||...|.+.+++.++ .+.++.+++++|++||+.||++|+|+++++||++
T Consensus 80 ~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~ 159 (285)
T 3rgf_B 80 LKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYR 159 (285)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHH
T ss_pred chhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHH
Confidence 35678999999999999999999777778876532 1124568999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCC-chhhhHHhhcCCHhhHHH
Q 029598 73 FVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVD-EQNLGCFHKRLNKDMVRR 151 (191)
Q Consensus 73 Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~-~~~~~~~~~~~~~~~l~~ 151 (191)
|+.+|++.++.. ..+.+.+++++.+++.++.++.|+||.||+|||++|.+.... ..++|+ ..+++.++|.+
T Consensus 160 fL~~~~~~l~~~-------~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~~~W~~-~~~~~~~~l~~ 231 (285)
T 3rgf_B 160 PLLQYVQDMGQE-------DMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDARQWFA-ELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHTCH-------HHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCCHHHHH-TSCSCHHHHHH
T ss_pred HHHHHHHHhCCC-------HHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCChhhHHH-HHCCCHHHHHH
Confidence 999999998753 257788999999999999999999999999999999764432 234444 46899999999
Q ss_pred HHHHHHHHHhhhc
Q 029598 152 CYNLIRKNRSQLL 164 (191)
Q Consensus 152 C~~~m~~~~~~~~ 164 (191)
|++.|.+++.+..
T Consensus 232 ~~~~il~ly~~~~ 244 (285)
T 3rgf_B 232 IIRVILKLYEQWK 244 (285)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999987643
No 10
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.8e-27 Score=191.01 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCChhhhhhhccC---CCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcC
Q 029598 7 WQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPS---SRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISC 83 (191)
Q Consensus 7 ~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~---~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~ 83 (191)
.++|+||+||||||||+||. ++.+.+++.++.. ....+++++|.+||+.||++|+|++.++||++|+.+|++.++.
T Consensus 69 ~~~~lv~~acL~lA~K~Ee~-~~~l~d~~~~~~~~~~~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~ 147 (235)
T 1zp2_A 69 FSLEALVATCIYLSCKVEEC-PVHIRTICNEANDLWSLKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGII 147 (235)
T ss_dssp CCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSS
T ss_pred cCHHHHHHHHHHHHhccccC-cccHHHHHHHHHHHccchhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCC
Confidence 78999999999999999997 6778999876520 0236899999999999999999999999999999999997644
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchh-hhHHhhcCCHhhHHHHHHHHHHHHhh
Q 029598 84 FNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQN-LGCFHKRLNKDMVRRCYNLIRKNRSQ 162 (191)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~-~~~~~~~~~~~~l~~C~~~m~~~~~~ 162 (191)
. ..+.+.+++++.+++.++.++.|+||.||+|||++|.+......+ ...++.|++.++|.+|++.|.+++..
T Consensus 148 ~-------~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 148 N-------QKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPKLLDLIKSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp C-------HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHCCHHHHHHHHHHHHHHHHHHTS
T ss_pred C-------HHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCCCcchhhcCCHHHHHHHHHHHHHHHhh
Confidence 3 257778899999999999999999999999999999764322212 22344599999999999999999865
Q ss_pred h
Q 029598 163 L 163 (191)
Q Consensus 163 ~ 163 (191)
.
T Consensus 221 ~ 221 (235)
T 1zp2_A 221 E 221 (235)
T ss_dssp S
T ss_pred C
Confidence 4
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.95 E-value=4.2e-27 Score=191.06 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=122.5
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhcc-----------CCCCccC--HHHHHHHHHHHHHHcCceeccCCh
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEP-----------SSRFLFK--PKTVHRMELLVMSSLKWRLCTVTP 70 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~-----------~~~~~~~--~~~i~~mE~~IL~~L~w~l~~pTp 70 (191)
.++.++|++|+||||||||+||. +|.+.+++.+.. ..++.|+ +++|.+||+.||++|+|++++|||
T Consensus 68 ~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P 146 (257)
T 2ivx_A 68 FTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHP 146 (257)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCH
T ss_pred hhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCc
Confidence 45678999999999999999999 788999875431 0134565 999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhc-cccccccChHHHHHHHHHHHhccc---CCc----hhhhH-Hh
Q 029598 71 FDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRT-VIDFLACPPSTIAAAVVLWATDHS---VDE----QNLGC-FH 141 (191)
Q Consensus 71 ~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~f~~~~PS~iAaa~i~~a~~~~---~~~----~~~~~-~~ 141 (191)
++|+.+|++.++... .+.+.+++++.+++. +..++.|+||.||+|||++|.+.. .+. .+||+ +.
T Consensus 147 ~~fl~~~~~~l~~~~-------~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~ 219 (257)
T 2ivx_A 147 HTDVVKCTQLVRASK-------DLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVD 219 (257)
T ss_dssp HHHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTC
T ss_pred HHHHHHHHHHhCCCc-------HHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhC
Confidence 999999999886542 467778888888774 456999999999999999996543 121 23554 34
Q ss_pred hcCCHhhHHHHHHHHHHHHhh
Q 029598 142 KRLNKDMVRRCYNLIRKNRSQ 162 (191)
Q Consensus 142 ~~~~~~~l~~C~~~m~~~~~~ 162 (191)
.+++.++|.+|++.|.+++..
T Consensus 220 ~~~~~~~l~~~~~~i~~~~~~ 240 (257)
T 2ivx_A 220 PTVTLELLDELTHEFLQILEK 240 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999854
No 12
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.95 E-value=2.2e-27 Score=192.68 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=124.6
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhcc--CCCCcc------CHHHHHHHHHHHHHHcCceeccCChHHHHH
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEP--SSRFLF------KPKTVHRMELLVMSSLKWRLCTVTPFDFVH 75 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~--~~~~~~------~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~ 75 (191)
-++.++|++|+||||||||+||. +|.+.+++..+. -.++.| ++++|.+||+.||++|+|++++|||++|+.
T Consensus 78 ~~~~~~qlv~~acL~lA~K~eE~-~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~ 156 (258)
T 2i53_A 78 FKQFPRYVTGACCLFLAGKVEET-PKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLL 156 (258)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHccccc-cccHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHH
Confidence 35678999999999999999996 788899885321 003344 489999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-C---------chhhhH-HhhcC
Q 029598 76 YFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-D---------EQNLGC-FHKRL 144 (191)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~---------~~~~~~-~~~~~ 144 (191)
+|++.++.... ....+.+.+++++.+++.++.++.|+||.||+|||++|.+..- + ..+||. +.+|+
T Consensus 157 ~~~~~l~~~~~---~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~ 233 (258)
T 2i53_A 157 KYAKQLKGDKN---KIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDV 233 (258)
T ss_dssp HHHHTBCSCHH---HHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSC
T ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCC
Confidence 99998765421 1225777888999999999999999999999999999976431 1 123444 24699
Q ss_pred CHhhHHHHHHHHHHHHhhh
Q 029598 145 NKDMVRRCYNLIRKNRSQL 163 (191)
Q Consensus 145 ~~~~l~~C~~~m~~~~~~~ 163 (191)
+.++|++|++.|.+++...
T Consensus 234 ~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 234 PVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp CHHHHHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 9999999999999888543
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.92 E-value=4e-26 Score=193.48 Aligned_cols=152 Identities=12% Similarity=0.087 Sum_probs=121.7
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhcc-----------CCCCccC--HHHHHHHHHHHHHHcCceeccCCh
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEP-----------SSRFLFK--PKTVHRMELLVMSSLKWRLCTVTP 70 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~-----------~~~~~~~--~~~i~~mE~~IL~~L~w~l~~pTp 70 (191)
.++.++|+||+||||||+|+||. +|.+.+++.+.. ..++.|+ +++|++||+.||++|+|++.+|||
T Consensus 75 v~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P 153 (358)
T 2pk2_A 75 FTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHP 153 (358)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCT
T ss_pred cccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCH
Confidence 45678999999999999999999 788899875430 0134454 899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhc-cccccccChHHHHHHHHHHHhcccC---Cc----hhhhH-Hh
Q 029598 71 FDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRT-VIDFLACPPSTIAAAVVLWATDHSV---DE----QNLGC-FH 141 (191)
Q Consensus 71 ~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~f~~~~PS~iAaa~i~~a~~~~~---~~----~~~~~-~~ 141 (191)
++||..|+..+.... .+.+.+++++.+++. +..++.|+||.||+|||++|.+..- +. .+||+ +.
T Consensus 154 ~~fL~~~~~~l~~~~-------~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~ 226 (358)
T 2pk2_A 154 HTHVVKCTQLVRASK-------DLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVD 226 (358)
T ss_dssp THHHHHHHHHTTCCH-------HHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSC
T ss_pred HHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHh
Confidence 999999999886532 467778888888875 4458999999999999999976431 21 23554 33
Q ss_pred hcCCHhhHHHHHHHHHHHHhhh
Q 029598 142 KRLNKDMVRRCYNLIRKNRSQL 163 (191)
Q Consensus 142 ~~~~~~~l~~C~~~m~~~~~~~ 163 (191)
.+++.++|.+|++.|.+++...
T Consensus 227 ~~vt~~~l~~i~~~il~~y~~~ 248 (358)
T 2pk2_A 227 ATVTLELLDELTHEFLQILEKT 248 (358)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999887543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.92 E-value=1.1e-24 Score=182.43 Aligned_cols=158 Identities=13% Similarity=0.113 Sum_probs=123.5
Q ss_pred CCCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCC---CccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHH
Q 029598 4 GKGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSR---FLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISK 80 (191)
Q Consensus 4 ~~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~---~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~ 80 (191)
.++.++|+||+||||||||+||. ++.+.+++.... .+ ..+++++|++||+.||++|+|++.++||++|+..|+..
T Consensus 96 ~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~-~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~ 173 (323)
T 1jkw_A 96 VMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLR-ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLID 173 (323)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSS-SCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhc-cChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHH
Confidence 35678999999999999999999 577899986542 01 24778999999999999999999999999999999976
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-CchhhhHHh-----hcCCHhhHHHHHH
Q 029598 81 ISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-DEQNLGCFH-----KRLNKDMVRRCYN 154 (191)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~~~~~~~~~-----~~~~~~~l~~C~~ 154 (191)
+...-........+.+.+++++.+++.++.++.|+||+||+|||++|.+... +...++.-. ++++.++|.+|++
T Consensus 174 l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~ 253 (323)
T 1jkw_A 174 LKTRYPILENPEILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMK 253 (323)
T ss_dssp HHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHH
Confidence 6311000011235777889999999999999999999999999999976432 223333311 4678899999999
Q ss_pred HHHHHHhhh
Q 029598 155 LIRKNRSQL 163 (191)
Q Consensus 155 ~m~~~~~~~ 163 (191)
.|..++...
T Consensus 254 ~i~~l~~~~ 262 (323)
T 1jkw_A 254 SMRNLVKKY 262 (323)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHcc
Confidence 999998764
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.87 E-value=3.3e-21 Score=151.57 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=123.6
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhcCC
Q 029598 5 KGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKISCF 84 (191)
Q Consensus 5 ~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~ 84 (191)
++.+.+++|+||||||||+||. ++++.|+.... + ++.++|.++|+.|++.|+|++..++|+.|+.+|...++..
T Consensus 43 ~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~---~--~~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~ 116 (207)
T 1c9b_A 43 KGRANDAIASACLYIACRQEGV-PRTFKEICAVS---R--ISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLP 116 (207)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTS---S--SCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHH---C--CCHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCC
Confidence 4567999999999999999999 68899998765 3 8899999999999999999999999999999999998765
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-C-chhhhHHhhcCCHhhHHHHHHHHHHHHhh
Q 029598 85 NPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-D-EQNLGCFHKRLNKDMVRRCYNLIRKNRSQ 162 (191)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~-~~~~~~~~~~~~~~~l~~C~~~m~~~~~~ 162 (191)
+ .+.+.+++++..+..+..+.+++|+.||+|||++|.+..- + ...-+....|++...|+.|++.|.+....
T Consensus 117 ~-------~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~~ 189 (207)
T 1c9b_A 117 K-------QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPD 189 (207)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGHHH
T ss_pred H-------HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3 4667788888887777889999999999999999977542 2 12234456899999999999999887755
Q ss_pred h
Q 029598 163 L 163 (191)
Q Consensus 163 ~ 163 (191)
.
T Consensus 190 ~ 190 (207)
T 1c9b_A 190 L 190 (207)
T ss_dssp H
T ss_pred h
Confidence 4
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.77 E-value=1.1e-17 Score=130.73 Aligned_cols=144 Identities=17% Similarity=0.159 Sum_probs=122.2
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceecc--CChHHHHHHHHHHhc
Q 029598 5 KGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCT--VTPFDFVHYFISKIS 82 (191)
Q Consensus 5 ~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~--pTp~~Fl~~~l~~~~ 82 (191)
++...+.++++|+|+|+|.||. ++.+.|+.... .++..+|.++++.|++.|+|++.. ++|+.|+.+|...++
T Consensus 47 ~gr~~~~vaaAclylAcr~~~~-p~~l~di~~~~-----~v~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~ 120 (200)
T 1ais_B 47 RGRSIESVMAACVYAACRLLKV-PRTLDEIADIA-----RVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELG 120 (200)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTC-CCCHHHHHHHT-----TSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCC-CCCHHHHHHHH-----CCCHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999997 67889998765 378999999999999999999999 999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-C-chhhhHHhhcCCHhhHHHHHHHHHHHH
Q 029598 83 CFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-D-EQNLGCFHKRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~-~~~~~~~~~~~~~~~l~~C~~~m~~~~ 160 (191)
..+ .+.+.+++++..+..+..+.+++|+.||+|||++|.+..- + ...-+...+|+++..|+.|++.|.+.+
T Consensus 121 l~~-------~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 121 LSE-------KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp CCH-------HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCH-------HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 653 4777888998888878889999999999999999976542 2 122234568999999999999998877
Q ss_pred h
Q 029598 161 S 161 (191)
Q Consensus 161 ~ 161 (191)
.
T Consensus 194 ~ 194 (200)
T 1ais_B 194 K 194 (200)
T ss_dssp T
T ss_pred C
Confidence 3
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=6.8e-16 Score=130.12 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcC------------ceeccCChHH
Q 029598 5 KGWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLK------------WRLCTVTPFD 72 (191)
Q Consensus 5 ~~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~------------w~l~~pTp~~ 72 (191)
+....+.++++|||||+|.|+. ++.+.++..+. .+++++|.++++.|++.|+ +++.+++|..
T Consensus 164 kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~-----~v~~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~ 237 (345)
T 3k7a_M 164 KGKSMESIMAASILIGCRRAEV-ARTFKEIQSLI-----HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLT 237 (345)
T ss_dssp CCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSS-----SCCSHHHHHHHHHHHHHHTCC--------------------
T ss_pred cCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHH-----CCCHHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHH
Confidence 3456789999999999999998 67889988765 3788999999999999999 9999999999
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccC-C-chhhhHHhhcCCHhhHH
Q 029598 73 FVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSV-D-EQNLGCFHKRLNKDMVR 150 (191)
Q Consensus 73 Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~-~-~~~~~~~~~~~~~~~l~ 150 (191)
|+.+|...++... .+.+.|++++..+..+..+..++|+.||+|||++|.+..- + ...-+....++++..|+
T Consensus 238 ~i~Rf~~~L~l~~-------~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr 310 (345)
T 3k7a_M 238 YIPRFCSHLGLPM-------QVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIK 310 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHcCCCH-------HHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH
Confidence 9999999987753 3667788888888777888999999999999999976431 1 12233456789999999
Q ss_pred HHHHHHHHHHhhh
Q 029598 151 RCYNLIRKNRSQL 163 (191)
Q Consensus 151 ~C~~~m~~~~~~~ 163 (191)
.+++.|.+.....
T Consensus 311 ~~ykel~~~~~~l 323 (345)
T 3k7a_M 311 SGYKILYEHRDKL 323 (345)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877544
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.93 E-value=5.8e-10 Score=93.84 Aligned_cols=146 Identities=12% Similarity=0.154 Sum_probs=42.1
Q ss_pred CchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCce------------eccCChHHH
Q 029598 6 GWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWR------------LCTVTPFDF 73 (191)
Q Consensus 6 ~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~------------l~~pTp~~F 73 (191)
......++++|+|+|+|.++. +.++.++..+. ..++++|.+..+.|.+.|+.. +...+|.+|
T Consensus 165 Grs~e~vaAAclYiACR~~~~-prtl~eI~~~~-----~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~ 238 (345)
T 4bbr_M 165 GKSMESIMAASILIGCRRAEV-ARTFKEIQSLI-----HVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTY 238 (345)
T ss_dssp TCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHH-----TCCTTHHHHHHHHHHHCC------------------------
T ss_pred CCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHh-----CCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHH
Confidence 345788999999999999998 56778887654 367899999999999999974 778899999
Q ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhh--hHHhhcCCHhhHHH
Q 029598 74 VHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNL--GCFHKRLNKDMVRR 151 (191)
Q Consensus 74 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 151 (191)
+.+|...++... .+.+.+.+++..+..+.....-+|+.||+|||++|.+..-..... .....++++.-|+.
T Consensus 239 i~Rf~s~L~l~~-------~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ 311 (345)
T 4bbr_M 239 IPRFCSHLGLPM-------QVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKS 311 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCcH-------HHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHH
Confidence 999999988754 355566677666555556678999999999999997643111111 22446777778887
Q ss_pred HHHHHHHHHhhhc
Q 029598 152 CYNLIRKNRSQLL 164 (191)
Q Consensus 152 C~~~m~~~~~~~~ 164 (191)
.++.|.+....+.
T Consensus 312 rykel~~~~~~l~ 324 (345)
T 4bbr_M 312 GYKILYEHRDKLV 324 (345)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhc
Confidence 7777777665554
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.19 E-value=0.00093 Score=54.47 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCceeccCChHHHHHHHHHHhc
Q 029598 6 GWQWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWRLCTVTPFDFVHYFISKIS 82 (191)
Q Consensus 6 ~~~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 82 (191)
....+-+-++||.+|+|+-+........+..+ +.++.+|+-+||+..|..|+|+|.++ +..|..+|+....
T Consensus 116 ~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-----gGisl~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 116 SLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-----GGVRCHELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-----HTSCHHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred CchHHHHHHHHHHHHHHhccccccChhHhhhc-----cCcCHHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 45667788999999999977656676777665 36789999999999999999998665 5667777776643
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=95.88 E-value=0.054 Score=41.16 Aligned_cols=86 Identities=17% Similarity=0.078 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhhhH--HhhcCCH
Q 029598 69 TPFDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNLGC--FHKRLNK 146 (191)
Q Consensus 69 Tp~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~~~--~~~~~~~ 146 (191)
...+++..+...++..+ .+...+..+.........+-..++..+|+||+++|.+..-....+.+ ..++++.
T Consensus 11 ~a~~~I~~~~~~L~L~~-------~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~ 83 (200)
T 1ais_B 11 FALSELDRITAQLKLPR-------HVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDK 83 (200)
T ss_dssp HHHHHHHHHHHHHTCCH-------HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCH
Confidence 34677888888887653 46777777777665555677899999999999999875422112222 4578999
Q ss_pred hhHHHHHHHHHHHHh
Q 029598 147 DMVRRCYNLIRKNRS 161 (191)
Q Consensus 147 ~~l~~C~~~m~~~~~ 161 (191)
.++..+++.|.+.+.
T Consensus 84 ~~i~~~~~~l~~~L~ 98 (200)
T 1ais_B 84 KEIGRSYRFIARNLN 98 (200)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887663
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=94.90 E-value=0.15 Score=38.91 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhhhH--HhhcCCHh
Q 029598 70 PFDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNLGC--FHKRLNKD 147 (191)
Q Consensus 70 p~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~~~--~~~~~~~~ 147 (191)
...++..+...++..+ .+...+..++........+..+++..||+||+++|.+.--....+.+ ...+++..
T Consensus 8 a~~~I~~~~~~L~L~~-------~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~ 80 (207)
T 1c9b_A 8 AFKEITTMADRINLPR-------NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKK 80 (207)
T ss_dssp HHHHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHH
T ss_pred HHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHH
Confidence 4567777777776543 46667777776665556778999999999999999875322122222 34668899
Q ss_pred hHHHHHHHHHHHHh
Q 029598 148 MVRRCYNLIRKNRS 161 (191)
Q Consensus 148 ~l~~C~~~m~~~~~ 161 (191)
++..+...|.+.+.
T Consensus 81 ~i~~~~~~ll~~L~ 94 (207)
T 1c9b_A 81 EIGRCFKLILKALE 94 (207)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC
Confidence 99998887777663
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=91.51 E-value=1.2 Score=36.97 Aligned_cols=87 Identities=9% Similarity=0.005 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhhhH--HhhcCC
Q 029598 68 VTPFDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNLGC--FHKRLN 145 (191)
Q Consensus 68 pTp~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~~~--~~~~~~ 145 (191)
-..+..|..+...++..+ .+...|..+.........+-.-+...|||||||+|.|..-..-.+.+ ..++++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~-------~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~ 199 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPK-------IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVK 199 (345)
T ss_dssp THHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCC
Confidence 445566666666665543 46777777766654444556788999999999999886532222222 346899
Q ss_pred HhhHHHHHHHHHHHHh
Q 029598 146 KDMVRRCYNLIRKNRS 161 (191)
Q Consensus 146 ~~~l~~C~~~m~~~~~ 161 (191)
..+|..+++.|.+.+.
T Consensus 200 ~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 200 TKEFGKTLNIMKNILR 215 (345)
T ss_dssp TTHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999887664
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=91.00 E-value=1.4 Score=34.19 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccc-cChHHHHHHHHHHHhcccCCchhhhHHh--h------
Q 029598 72 DFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLA-CPPSTIAAAVVLWATDHSVDEQNLGCFH--K------ 142 (191)
Q Consensus 72 ~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~-~~PS~iAaa~i~~a~~~~~~~~~~~~~~--~------ 142 (191)
+|+......++... .....|..++...+....+.. +.+-.||+||+++|.+.--...++..+. +
T Consensus 33 ~~i~~v~~~l~L~~-------~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 33 KVVQTFGDRLRLRQ-------RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHHTTCCH-------HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCH-------HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 45555555554432 455566677666555567788 9999999999999976432111222221 1
Q ss_pred --cCCHhhHHHHHHHHHHHH
Q 029598 143 --RLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 143 --~~~~~~l~~C~~~m~~~~ 160 (191)
.++.++|..+-..|.+.+
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVL 125 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHHHHC
Confidence 467888888777776655
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=90.36 E-value=0.36 Score=40.00 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcccCCchhhhH--HhhcCCHh
Q 029598 70 PFDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVDEQNLGC--FHKRLNKD 147 (191)
Q Consensus 70 p~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~~~~~~~--~~~~~~~~ 147 (191)
.+.+|+.+...++..+ .+...|..+.........+-..+...||+|||++|.|.---...+.+ ..++++..
T Consensus 129 a~~~I~~~~~~L~Lp~-------~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~k 201 (345)
T 3k7a_M 129 AFAKITMLCDAAELPK-------IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTK 201 (345)
T ss_dssp HHHHHHHHHHHTTCCH-------HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSH
T ss_pred HHHHHHHHHHHcCCCH-------HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHH
Confidence 3445555555554432 45666666666554445566889999999999999875422222222 34679999
Q ss_pred hHHHHHHHHHHHHh
Q 029598 148 MVRRCYNLIRKNRS 161 (191)
Q Consensus 148 ~l~~C~~~m~~~~~ 161 (191)
+|..|++.|.+.+.
T Consensus 202 eIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998876
No 25
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=76.07 E-value=19 Score=29.22 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 029598 93 SVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH 130 (191)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~ 130 (191)
.+...|..|+...+....+..+.|-.||+||+++|.+.
T Consensus 78 ~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~ 115 (323)
T 1jkw_A 78 SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKV 115 (323)
T ss_dssp HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhh
Confidence 46667777777766667888999999999999999753
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=75.81 E-value=6.9 Score=30.44 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 029598 71 FDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH 130 (191)
Q Consensus 71 ~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~ 130 (191)
.+|+......++... .....+..++...+....+..+.+-.+|+||+++|.+.
T Consensus 35 ~~~i~~v~~~l~l~~-------~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~ 87 (257)
T 2ivx_A 35 ANLIQEMGQRLNVSQ-------LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKV 87 (257)
T ss_dssp HHHHHHHHHHTTCCH-------HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcH-------HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhcc
Confidence 355555555555442 45666777877776667888999999999999999653
No 27
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=73.36 E-value=8.7 Score=29.80 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 029598 71 FDFVHYFISKISCFNPQRDGFGSVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH 130 (191)
Q Consensus 71 ~~Fl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~ 130 (191)
.+|+......++... .....|..++...+....+..+.+-.+|+||+++|.+.
T Consensus 45 ~~~i~~v~~~l~l~~-------~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~ 97 (258)
T 2i53_A 45 ARFIFDVGTRLGLHY-------DTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKV 97 (258)
T ss_dssp HHHHHHHHHHTTCCH-------HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCh-------HHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcc
Confidence 345555555555442 45666777777766666788899999999999999753
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=71.99 E-value=7.3 Score=31.03 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc
Q 029598 93 SVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH 130 (191)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~ 130 (191)
.....+..++...+....+..+.+-.||+||+++|.+.
T Consensus 62 ~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~ 99 (285)
T 3rgf_B 62 QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKV 99 (285)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhh
Confidence 45666677776665567888999999999999999763
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=70.77 E-value=7.4 Score=32.20 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhccccccccChHHHHHHHHHHHhc
Q 029598 93 SVFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATD 129 (191)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~ 129 (191)
..+..|..|+...+....+..+.+-.||+|||++|.+
T Consensus 57 ~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K 93 (358)
T 2pk2_A 57 LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAK 93 (358)
T ss_dssp HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHh
Confidence 4666777787777766788899999999999999965
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=66.38 E-value=32 Score=26.89 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhccccccccChHHHHHHHHHHHhccc--CCchhhhH--Hhh--cCCHhhHHHHHHHHHHHH
Q 029598 94 VFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHS--VDEQNLGC--FHK--RLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 94 ~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~--~~~~~~~~--~~~--~~~~~~l~~C~~~m~~~~ 160 (191)
....+..++...+....+....+-.+|+||+++|.+.- .++ .+.+ ..+ .++.++|..+-..|.+.+
T Consensus 58 tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p-~~~d~~~~~~~~~~~~eI~~mE~~IL~~L 129 (269)
T 2b9r_A 58 TMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPP-EIGDFAFVTDNTYTKHQIRQMEMKILRAL 129 (269)
T ss_dssp HHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCC-CHHHHHHHTCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCc-cHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 44455666666555556777788999999999997642 221 1222 222 478888888777776655
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=66.25 E-value=40 Score=26.26 Aligned_cols=66 Identities=9% Similarity=0.035 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc--cCCchhhhH--Hh--hcCCHhhHHHHHHHHHHHH
Q 029598 94 VFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH--SVDEQNLGC--FH--KRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 94 ~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~--~~~~~~~~~--~~--~~~~~~~l~~C~~~m~~~~ 160 (191)
.+..+..++...+....+....+-.+|+||+++|.+. ..+. .+.. .. ..++.++|..+-..|.+.+
T Consensus 77 tl~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~-~~~~~~~~~~~~~~~~eI~~mE~~IL~~L 148 (271)
T 2w96_A 77 VFPLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL-TAEKLCIYTDNSIRPEELLQMELLLVNKL 148 (271)
T ss_dssp HHHHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC-CHHHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHC
Confidence 3444556666655555677788999999999999753 2221 1222 22 3478888888777666655
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=56.56 E-value=36 Score=26.38 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=36.4
Q ss_pred HHHHHHHHHhccccccccChHHHHHHHHHHHhcccCC-chhhhH--Hhh--cCCHhhHHHHHHHHHHHH
Q 029598 97 HAAALIISTRTVIDFLACPPSTIAAAVVLWATDHSVD-EQNLGC--FHK--RLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 97 ~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~~~-~~~~~~--~~~--~~~~~~l~~C~~~m~~~~ 160 (191)
.+..++...+....+.....-.+|+||+++|.+.--. ...+.+ ..+ .++.+++..+-..|.+.+
T Consensus 62 lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L 130 (260)
T 2cch_B 62 LAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVL 130 (260)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHc
Confidence 3444444333333444556778999999999653211 111222 122 478888888777766655
No 33
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=54.87 E-value=65 Score=24.75 Aligned_cols=66 Identities=12% Similarity=-0.039 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhccccccccChHHHHHHHHHHHhccc--CCchhhhHH--h--hcCCHhhHHHHHHHHHHHH
Q 029598 94 VFSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDHS--VDEQNLGCF--H--KRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 94 ~~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~~--~~~~~~~~~--~--~~~~~~~l~~C~~~m~~~~ 160 (191)
..-.+..++...+..........-.+|++|+++|.+.- .+. .+.++ . ..++.+++..+-..|.+.+
T Consensus 72 tl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p-~~~d~~~~~~~~~~~~~i~~mE~~IL~~L 143 (254)
T 2f2c_A 72 VFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPM-TVSKLTYLSCDCFTNLELINQEKDILEAL 143 (254)
T ss_dssp HHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC-CHHHHSTTC---CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCC-CHHHHHHHhCCCCCHHHHHHHHHHHHHHC
Confidence 34445666666655556777888999999999997642 221 12221 2 3478888877766666555
No 34
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=52.20 E-value=12 Score=18.93 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHcCce
Q 029598 47 PKTVHRMELLVMSSLKWR 64 (191)
Q Consensus 47 ~~~i~~mE~~IL~~L~w~ 64 (191)
.++|.++|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999886
No 35
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=51.70 E-value=56 Score=25.14 Aligned_cols=65 Identities=8% Similarity=-0.021 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc--cCCchhhhH--Hh--hcCCHhhHHHHHHHHHHHH
Q 029598 95 FSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH--SVDEQNLGC--FH--KRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 95 ~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~--~~~~~~~~~--~~--~~~~~~~l~~C~~~m~~~~ 160 (191)
+-.+..++...+..........-.+|++|+++|.+. ..+. .+.+ .. ..++.++|..+-..|.+.+
T Consensus 72 l~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p-~~~d~~~~~~~~~~~~~i~~mE~~iL~~L 142 (257)
T 1g3n_C 72 VALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPI-STSSLCYAAADSFSRQELIDQEKELLEKL 142 (257)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCC-CHHHHHHHTTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCC-CHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 334455555544444555666778999999999763 2221 1222 22 3478888887766666554
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=44.54 E-value=73 Score=25.40 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhccccccccChHHHHHHHHHHHhcc--cCCc--hhhhHH-hhcCCHhhHHHHHHHHHHHH
Q 029598 95 FSHAAALIISTRTVIDFLACPPSTIAAAVVLWATDH--SVDE--QNLGCF-HKRLNKDMVRRCYNLIRKNR 160 (191)
Q Consensus 95 ~~~~~~~~~~~l~~~~f~~~~PS~iAaa~i~~a~~~--~~~~--~~~~~~-~~~~~~~~l~~C~~~m~~~~ 160 (191)
+-.+..++...+....+....+-.+|++|+++|.+. ..+. ..+... -..|+.++|..+=..|.+.+
T Consensus 92 ~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L 162 (306)
T 3g33_B 92 FPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKL 162 (306)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHc
Confidence 334556665554445677888899999999999763 2221 112111 13478888877665555544
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=39.66 E-value=96 Score=24.28 Aligned_cols=64 Identities=11% Similarity=-0.000 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcc-ccccccChHHHHHHHHHHHhccc--CCchhhhH--Hh--hcCCHhhHHHHHHHHHHHHh
Q 029598 97 HAAALIISTRTV-IDFLACPPSTIAAAVVLWATDHS--VDEQNLGC--FH--KRLNKDMVRRCYNLIRKNRS 161 (191)
Q Consensus 97 ~~~~~~~~~l~~-~~f~~~~PS~iAaa~i~~a~~~~--~~~~~~~~--~~--~~~~~~~l~~C~~~m~~~~~ 161 (191)
.+..++...+.. ........-.+|++|+++|.+.- .+. .+.+ .. ..++.++|..+-..|.+.+.
T Consensus 73 lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p-~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 73 LAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPP-KLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCC-CHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCC-cHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 344444443322 23456778899999999997642 121 1222 12 24788998888777766553
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=31.48 E-value=73 Score=24.47 Aligned_cols=70 Identities=17% Similarity=0.304 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCChhhhhhhccCCCCccCHHHHHHHHHHHHHHcCce-----eccCChHHHHHHHHHHhc
Q 029598 8 QWHLLSVACLAVAAKMEETSVPNLLDLQLIEPSSRFLFKPKTVHRMELLVMSSLKWR-----LCTVTPFDFVHYFISKIS 82 (191)
Q Consensus 8 ~lqLva~tcL~IAsK~eE~~~P~~~~l~~~~~~~~~~~~~~~i~~mE~~IL~~L~w~-----l~~pTp~~Fl~~~l~~~~ 82 (191)
+-|=||++|+.||+----..+| +.++.++. .+...-+..+.| |++.|+-. +...-.-..|.+|+..++
T Consensus 56 ~q~dVAAAc~miAae~~~~Pip-laE~r~lD----~sL~Dvelrr~E--iv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~ 128 (260)
T 3h4c_A 56 RQPDVAAACLMIAAEEAQQPLP-LAEVRCLD----SSLGDVELRRAD--IVRELHLEDSERRLRDTFADNLLVKYILKLG 128 (260)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCC-HHHHHHHC----TTCCCHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHcCCCcc-HHHHHHHh----hhhhHHHHHHHH--HHHHccCCHHHHHHHHHhhhhHHHHHHHHhc
Confidence 3577999999999854444333 56776654 455544555554 55666542 222222334556666655
Q ss_pred CC
Q 029598 83 CF 84 (191)
Q Consensus 83 ~~ 84 (191)
..
T Consensus 129 Lq 130 (260)
T 3h4c_A 129 LQ 130 (260)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 39
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=21.54 E-value=1.8e+02 Score=19.14 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=32.3
Q ss_pred ccChHHHHHHHHHHHhccc---CCchhhhHHhhcCCHhhHHHHHHHHHHHHhh
Q 029598 113 ACPPSTIAAAVVLWATDHS---VDEQNLGCFHKRLNKDMVRRCYNLIRKNRSQ 162 (191)
Q Consensus 113 ~~~PS~iAaa~i~~a~~~~---~~~~~~~~~~~~~~~~~l~~C~~~m~~~~~~ 162 (191)
.+.--+-++||++.+.|.. .+...+.+ .+|++..++..-...+.++..+
T Consensus 42 D~s~P~f~aaA~~~acr~~K~kVdK~KL~~-~s~lk~~~f~~l~~~~e~~~~~ 93 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKLKVDKNKMVA-TSGVKKAIFDRLCKQLEKIGQQ 93 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCCCCHHHHHH-TTCBCHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHHHHHccCCCHHHHHH-HHCCCHHHHHHHHHHHHHHHHh
Confidence 4444566778888887754 34444443 3788888888777777776643
Done!