BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029599
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 298 bits (763), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 146/191 (76%), Positives = 157/191 (82%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
++ AE AH ANNGLDIAVRLLEP KEQFP +SYAD YQLAGVV VE+TGGP++PFHPGR
Sbjct: 59 IKHQAELAHGANNGLDIAVRLLEPIKEQFPIVSYADFYQLAGVVAVEITGGPEVPFHPGR 118
Query: 61 DDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPW 120
+DK EPP EGRLPDA +G+DHLR VFG MGLSD+DIVALSGGHT+G HKERSGFEGPW
Sbjct: 119 EDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPW 178
Query: 121 TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXH 180
T NPLIFDNSYFTELLTGEKDGLLQLPSDKALL D VFRPLVEK H
Sbjct: 179 TSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAH 238
Query: 181 LKLSELGFAEA 191
LKLSELGFAEA
Sbjct: 239 LKLSELGFAEA 249
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 291 bits (745), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 291 bits (744), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 290 bits (743), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 63 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 122
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 123 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 182
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 183 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 242
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 243 ELGFADA 249
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/187 (75%), Positives = 155/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 157/191 (82%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
++ AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR
Sbjct: 59 IKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 61 DDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPW 120
+DK EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPW
Sbjct: 119 EDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPW 178
Query: 121 TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXH 180
T NPLIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 181 LKLSELGFAEA 191
KLSELGFA+A
Sbjct: 239 QKLSELGFADA 249
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 157/191 (82%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
++ AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR
Sbjct: 59 IKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 61 DDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPW 120
+DK EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPW
Sbjct: 119 EDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPW 178
Query: 121 TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXH 180
T NPLIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 181 LKLSELGFAEA 191
KLSELGFA+A
Sbjct: 239 QKLSELGFADA 249
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 141/191 (73%), Positives = 157/191 (82%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
++ AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR
Sbjct: 59 IKHPAELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 61 DDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPW 120
+DK EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKERSGFEGPW
Sbjct: 119 EDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKERSGFEGPW 178
Query: 121 TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXH 180
T NPLIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 181 LKLSELGFAEA 191
KLSELGFA+A
Sbjct: 239 QKLSELGFADA 249
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/187 (74%), Positives = 154/187 (82%)
Query: 5 AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKA 64
AE AHSANNGLDIAVRLLEP K +FP +SYAD YQLAGVV VEVTGGP++PFHPGR+DK
Sbjct: 75 AELAHSANNGLDIAVRLLEPLKAEFPILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKP 134
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNP 124
EPP EGRLPDA +G+DHLR VFG MGL+D+DIVALSGGHT+G HKE SGFEGPWT NP
Sbjct: 135 EPPPEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHKEASGFEGPWTSNP 194
Query: 125 LIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKXXXXXXXXXXXXXXXHLKLS 184
LIFDNSYFTELL+GEK+GLLQLPSDKALL DPVFRPLV+K H KLS
Sbjct: 195 LIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLS 254
Query: 185 ELGFAEA 191
ELGFA+A
Sbjct: 255 ELGFADA 261
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 113/208 (54%), Gaps = 22/208 (10%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
+R E H AN GL A+ LL+P K+++ ++YADL+QLA +E GGP IP GR
Sbjct: 56 LRFDVELKHGANAGLVNALNLLKPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGR 115
Query: 61 DDKAEP---PQEGRLPDAKQGN--DHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSG 115
D EP P+EGRLPDA + HLR VF +MGL+DK+IVALSG HTLGR +RSG
Sbjct: 116 VDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF-YRMGLNDKEIVALSGAHTLGRSRPDRSG 174
Query: 116 FEGP----------------WTRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFR 159
+ P WT L FDNSYF ++ + LL LP+D AL +DP F+
Sbjct: 175 WGKPETKYTKDGPGAPGGQSWTAQWLKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFK 234
Query: 160 PLVEKXXXXXXXXXXXXXXXHLKLSELG 187
EK H KLS LG
Sbjct: 235 VYAEKYAADPEAFFKDYAEAHAKLSNLG 262
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 109/206 (52%), Gaps = 20/206 (9%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
MR E ++ N GLDI + LE K+++P ISYADL+ LA V +E GGP IPF GR
Sbjct: 55 MRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGR 114
Query: 61 DDKAEPPQ---EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE 117
D + +GRLPD + H+R+VF ++G +D++ VAL G HT G CH E SG+
Sbjct: 115 VDAKDGSVCGPDGRLPDGSKTQSHVREVF-RRLGFNDQETVALIGAHTCGECHIEFSGYH 173
Query: 118 GPWTRNPLIFDNSYFTELLTGE----------------KDGLLQLPSDKALLDDPVFRPL 161
GPWT + FDNS+FT+LL + L+ LPSD LL DP +R
Sbjct: 174 GPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKY 233
Query: 162 VEKXXXXXXXXXXXXXXXHLKLSELG 187
VE KL+ELG
Sbjct: 234 VELYAKDNDRFNKDFANAFKKLTELG 259
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 109/206 (52%), Gaps = 20/206 (9%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
MR E ++ N GLDI + LE K+++P ISYADL+ LA V +E GGP IPF GR
Sbjct: 54 MRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGR 113
Query: 61 DDKAEPPQ---EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE 117
D + +GRLPD + H+R+VF ++G +D++ VAL G HT G CH E SG+
Sbjct: 114 VDAKDGSVCGPDGRLPDGSKTQSHVREVF-RRLGFNDQETVALIGAHTCGECHIEFSGYH 172
Query: 118 GPWTRNPLIFDNSYFTELLTGE----------------KDGLLQLPSDKALLDDPVFRPL 161
GPWT + FDNS+FT+LL + L+ LPSD LL DP +R
Sbjct: 173 GPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKY 232
Query: 162 VEKXXXXXXXXXXXXXXXHLKLSELG 187
VE KL+ELG
Sbjct: 233 VELYAKDNDRFNKDFANAFKKLTELG 258
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 139 bits (351), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 108/206 (52%), Gaps = 20/206 (9%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
MR E ++ N GLDI + LE K+++P ISYADL+ LA V +E GGP IPF GR
Sbjct: 55 MRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGR 114
Query: 61 DDKAEPPQ---EGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE 117
D + +GRLPD + H+R+VF ++G +D++ VAL G HT G H E SG+
Sbjct: 115 VDAKDGSVCGPDGRLPDGSKTQSHVREVF-RRLGFNDQETVALIGAHTCGETHIEFSGYH 173
Query: 118 GPWTRNPLIFDNSYFTELLTGE----------------KDGLLQLPSDKALLDDPVFRPL 161
GPWT + FDNS+FT+LL + L+ LPSD LL DP +R
Sbjct: 174 GPWTHDKNGFDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKY 233
Query: 162 VEKXXXXXXXXXXXXXXXHLKLSELG 187
VE KL+ELG
Sbjct: 234 VELYAKDNDRFNKDFANAFKKLTELG 259
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 136 bits (342), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 18/181 (9%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 71 YRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 61 DDKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG 118
D E P GRLPDA + D++R F ++ ++D+++VALSG HTLG+ H + SG+EG
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALSGAHTLGKTHLKNSGYEG 189
Query: 119 PWTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVE 163
PWT N +FDNS++ LL + K G LQLP+D +L+ DP + +V+
Sbjct: 190 PWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVK 249
Query: 164 K 164
+
Sbjct: 250 E 250
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 102/180 (56%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G HTLG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
WT NP +FDNS++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WTANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 102/181 (56%), Gaps = 18/181 (9%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 71 YRFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGR 130
Query: 61 DDKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG 118
D E P GRLPDA + D++R F ++ ++D+++VAL G HTLG+ H + SG+EG
Sbjct: 131 VDTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEG 189
Query: 119 PWTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVE 163
PWT N +FDNS++ LL + K G LQLP+D +L+ DP + +V+
Sbjct: 190 PWTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVK 249
Query: 164 K 164
+
Sbjct: 250 E 250
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 101/180 (56%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G HTLG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
WT N +FDNS++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WTANNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G HTLG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHTLGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +FDNS++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WDATNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLT---------------GEKDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLT---------------GEKDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 119 bits (298), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 71 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 130
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 131 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 189
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 190 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 249
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLT---------------GEKDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEWQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 96/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+ +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKE 250
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNCFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPWNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N Y+ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 65 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 124
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 125 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 183
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+ +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 184 FGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 243
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 71 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 130
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + D++R F ++ ++D+++VAL G H LG+ H +RSG+EGP
Sbjct: 131 DTPEDTTPDNGRLPDADKDADYVRTFF-QRLNMNDREVVALMGAHALGKTHLKRSGYEGP 189
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+ +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 190 FGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 249
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 116 bits (291), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALKGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRAGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGCANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 134
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 135 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 193
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 194 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 253
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 116 bits (290), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKE 247
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKE 252
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP++ +L+ DP + +V++
Sbjct: 193 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKE 252
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 134
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 135 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 193
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP++ +L+ DP + +V++
Sbjct: 194 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKE 253
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPD + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDMDKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPD + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDYDKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N + LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEKYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 113 bits (283), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N + LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 WGAANNVFTNEGYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 134
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 135 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 193
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+ +L+ DP + +V++
Sbjct: 194 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKE 253
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTELKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+ +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 YGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 129
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G LG+ H + SG+EGP
Sbjct: 130 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEGP 188
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 189 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+ +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 FGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R + +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 70 RFKKQFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 129
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G LG+ H + SG+EGP
Sbjct: 130 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAGALGKTHLKNSGYEGP 188
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
W +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 189 WGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 QGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 QGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 133
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 134 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 192
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 193 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 252
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 191 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 250
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 129
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 130 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 188
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 189 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 248
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 247
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 131
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EGP
Sbjct: 132 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGP 190
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
+F N ++ LL + K G + LP++ +L+ DP + +V++
Sbjct: 191 GGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKE 250
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 20/180 (11%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 129
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EG
Sbjct: 130 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGG 188
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
N +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 189 GANN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 246
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 20/180 (11%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 134
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EG
Sbjct: 135 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGG 193
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
N +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 194 GANN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 251
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 94/180 (52%), Gaps = 20/180 (11%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRD 61
R E +N GL + LEP ++FP IS DL+ L GV V+ GP IP+ GR
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPIHKEFPWISSGDLFSLGGVTAVQEMQGPKIPWRCGRV 128
Query: 62 DKAE--PPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGP 119
D E P GRLPDA + ++R F ++ ++D+++VAL G H LG+ H + SG+EG
Sbjct: 129 DTPEDTTPDNGRLPDADKDAGYVRTFF-QRLNMNDREVVALMGAHALGKTHLKNSGYEGG 187
Query: 120 WTRNPLIFDNSYFTELLTGE---------------KDGLLQLPSDKALLDDPVFRPLVEK 164
N +F N ++ LL + K G + LP+D +L+ DP + +V++
Sbjct: 188 GANN--VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKE 245
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 25/176 (14%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E SANNG+D +V L PF ++ TIS ADL Q AG V + G P + F GR +K
Sbjct: 74 EPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKT 133
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRN 123
+G +P+ + + Q F G + ++V+L H++ R +K + P+
Sbjct: 134 IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDST 193
Query: 124 PLIFDNSYFTELL-----------------------TGEKDGLLQLPSDKALLDDP 156
P FD F E+L +G G ++L SD AL DP
Sbjct: 194 PFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDP 249
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 25/176 (14%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E SANNG+D +V L PF ++ TIS ADL Q AG V + G P + F GR +K
Sbjct: 74 EPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKT 133
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRN 123
+G +P+ + + Q F G + ++V+L H++ R +K + P+
Sbjct: 134 IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARANKVDQTIDAAPFDST 193
Query: 124 PLIFDNSYFTELL-----------------------TGEKDGLLQLPSDKALLDDP 156
P FD F E+L +G G ++L SD AL DP
Sbjct: 194 PFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDP 249
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 25/176 (14%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E SANNG+D +V L PF ++ TIS ADL Q AG V + G P + F GR +K
Sbjct: 74 EPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKT 133
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFE-GPWTRN 123
+G +P+ + + Q F G + ++V+L H++ R K + P+
Sbjct: 134 IAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDST 193
Query: 124 PLIFDNSYFTELL-----------------------TGEKDGLLQLPSDKALLDDP 156
P FD F E+L +G G ++L SD AL DP
Sbjct: 194 PFTFDTQVFLEVLLKGVGFPGSANNTGEVASPLPLGSGSDTGEMRLQSDFALAHDP 249
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 19/168 (11%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKA 64
E A N GL+ PF +S+ D Q AG VG GGP + F GR + +
Sbjct: 79 ETAFIPNFGLEFTTEGFIPFALAH-GVSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNIS 137
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+P +G +PD D + A +G S ++V L H++ ++ + G P+
Sbjct: 138 QPSPDGLVPDPTDSADKILARM-ADIGFSPTEVVHLLASHSIAAQYEVDTDVAGSPFDST 196
Query: 124 PLIFDNSYFTE-LLTGEK--------------DGLLQLPSDKALLDDP 156
P +FD +F E LL G + G +L SD AL DP
Sbjct: 197 PSVFDTQFFVESLLHGTQFTGSGQGGEVMSPIPGEFRLQSDFALSRDP 244
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E AN G+D V +PF + IS D Q AG VGV GG IPF GR D
Sbjct: 72 ETNFPANAGIDEIVSAQKPFVAKH-NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV 130
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+ +P+ + D + G G S ++V L H++ K G P+
Sbjct: 131 AASPDHLVPEPQDSVDSILARMG-DAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDST 189
Query: 124 PLIFDNSYFTE------LLTGEKD----------GLLQLPSDKALLDDP 156
P +FD+ +F E L G D G ++L SD L DP
Sbjct: 190 PGVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDP 238
>pdb|3VLH|A Chain A, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLH|B Chain B, Crystal Structure Analysis Of The Arg409leu Variants Of
Katg From Haloarcula Marismortui
pdb|3VLI|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLI|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Katg From Haloarcula Marismortui
pdb|3VLJ|A Chain A, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
pdb|3VLJ|B Chain B, Crystal Structure Analysis Of The Cyanide Arg409leu
Variant Complexes With O-Dianisidine In Katg From
Haloarcula Marismortui
Length = 737
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 78/216 (36%), Gaps = 79/216 (36%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL LAG V +E G + GR
Sbjct: 116 RFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGR 175
Query: 61 DDKAEPP-----------------------QEGR-----------------LPDAKQGND 80
+D E QEG PD +
Sbjct: 176 EDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAK 235
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE--------------------------- 112
++RQ F +M ++DK+ AL +GGHT G+ H
Sbjct: 236 NIRQTFD-RMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKN 294
Query: 113 ---------RSGFEGPWTRNPLIFDNSYFTELLTGE 139
SG EGPWT++P +D Y LL E
Sbjct: 295 GNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYE 330
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 75/212 (35%), Gaps = 81/212 (38%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ +S+ADL AG + E G F GR
Sbjct: 114 RFAPLNSWPDNTNLDKARRLLWPIKQKYGNKLSWADLIAYAGTIAYESMGLKTFGFAFGR 173
Query: 61 DDKAEP-------PQEGRLPDAKQGND--------------------------------- 80
+D P P++ P + N
Sbjct: 174 EDIWHPEKDIYWGPEKEWFPPSTNPNSRYTGDRELENPLAAVTMGLIYVNPEGVDGNPDP 233
Query: 81 ----HLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKE----------------------- 112
H +V A+M ++D++ VAL+ GGHT+G+CH
Sbjct: 234 LKTAHDVRVTFARMAMNDEETVALTAGGHTVGKCHGNGNAALLGPEPEGADVEDQGLGWI 293
Query: 113 ------------RSGFEGPWTRNPLIFDNSYF 132
SG EG WT +P +DN YF
Sbjct: 294 NKTQSGIGRNAVTSGLEGAWTPHPTQWDNGYF 325
>pdb|1ITK|A Chain A, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
pdb|1ITK|B Chain B, Crystal Structure Of Catalase-peroxidase From Haloarcula
Marismortui
Length = 731
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 78/216 (36%), Gaps = 79/216 (36%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL LAG V +E G + GR
Sbjct: 116 RFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGR 175
Query: 61 DDKAEPP-----------------------QEGR-----------------LPDAKQGND 80
+D E QEG PD +
Sbjct: 176 EDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAK 235
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE--------------------------- 112
++RQ F +M ++DK+ AL +GGHT G+ H
Sbjct: 236 NIRQTFD-RMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKN 294
Query: 113 ---------RSGFEGPWTRNPLIFDNSYFTELLTGE 139
SG EGPWT++P +D Y LL E
Sbjct: 295 GNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYE 330
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E AN G+D V +PF + IS D Q AG VGV GG IPF GR D
Sbjct: 72 ETNFPANAGIDEIVSAQKPFVAKH-NISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAV 130
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+ +P+ D + G G S ++V L H++ K G P+
Sbjct: 131 AASPDHLVPEGFDSVDSILARMG-DAGFSPVEVVWLLASHSIAAADKVDPSIPGTPFDST 189
Query: 124 PLIFDNSYFTE------LLTGEKD----------GLLQLPSDKALLDDP 156
P +FD+ +F E L G D G ++L SD L DP
Sbjct: 190 PEVFDSQFFIETQLKGRLFPGTADNKGEAQSPLQGEIRLQSDHLLARDP 238
>pdb|3UW8|A Chain A, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
pdb|3UW8|B Chain B, Crystal Structure Analysis Of The Ser305thr Variants Of
Katg From Haloarcula Marismortui
Length = 737
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 78/216 (36%), Gaps = 79/216 (36%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL LAG V +E G + GR
Sbjct: 116 RFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGR 175
Query: 61 DDKAEPP-----------------------QEGR-----------------LPDAKQGND 80
+D E QEG PD +
Sbjct: 176 EDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAK 235
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE--------------------------- 112
++RQ F +M ++DK+ AL +GGHT G+ H
Sbjct: 236 NIRQTFD-RMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKN 294
Query: 113 ---------RSGFEGPWTRNPLIFDNSYFTELLTGE 139
+G EGPWT++P +D Y LL E
Sbjct: 295 GNSKGGEMITTGIEGPWTQSPTEWDMGYINNLLDYE 330
>pdb|3VLK|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLK|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLL|A Chain A, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
pdb|3VLL|B Chain B, Crystal Structure Analysis Of The Ser305ala Variant Of
Katg From Haloarcula Marismortui Complexes With
Inhibitor Sha
Length = 737
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 78/216 (36%), Gaps = 79/216 (36%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL LAG V +E G + GR
Sbjct: 116 RFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGR 175
Query: 61 DDKAEPP-----------------------QEGR-----------------LPDAKQGND 80
+D E QEG PD +
Sbjct: 176 EDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAK 235
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE--------------------------- 112
++RQ F +M ++DK+ AL +GGHT G+ H
Sbjct: 236 NIRQTFD-RMAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKN 294
Query: 113 ---------RSGFEGPWTRNPLIFDNSYFTELLTGE 139
+G EGPWT++P +D Y LL E
Sbjct: 295 GNSKGGEMITAGIEGPWTQSPTEWDMGYINNLLDYE 330
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 75/190 (39%), Gaps = 46/190 (24%)
Query: 4 AAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDD 62
A A+SA G ++ + + P +S D+ LA V ++GGP GR D
Sbjct: 69 AGPNANSAR-GFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRD 127
Query: 63 KAEPPQEG---RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR--C-------- 109
Q G +P QG ++ F A +GL+ D+VALSG HT GR C
Sbjct: 128 TLTANQAGANSSIPSPTQGLSNITSKFSA-VGLNTNDLVALSGAHTFGRATCGVFSNRLF 186
Query: 110 -------------------------HKER-SGFEGPWTRNPLIFDNSYFTELLTGEKDGL 143
K R SG P FDN+YFT L + +GL
Sbjct: 187 NFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQS--NNGL 244
Query: 144 LQLPSDKALL 153
LQ SD+ L
Sbjct: 245 LQ--SDQELF 252
>pdb|3VLM|A Chain A, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
pdb|3VLM|B Chain B, Crystal Structure Analysis Of The Met244ala Variant Of
Katg From Haloarcula Marismortui
Length = 737
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 77/216 (35%), Gaps = 79/216 (36%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL LAG V +E G + GR
Sbjct: 116 RFAPINSWPDNANLDKARRLLLPIKQKYGQKISWADLMILAGNVAIESMGFKTFGYAGGR 175
Query: 61 DDKAEPP-----------------------QEGR-----------------LPDAKQGND 80
+D E QEG PD +
Sbjct: 176 EDAFEEDKAVNWGPEDEFETQERFDEPGEIQEGLGASVMGLIYVNPEGPDGNPDPEASAK 235
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE--------------------------- 112
++RQ F + ++DK+ AL +GGHT G+ H
Sbjct: 236 NIRQTFD-RAAMNDKETAALIAGGHTFGKVHGADDPEENLGPEPEAAPIEQQGLGWQNKN 294
Query: 113 ---------RSGFEGPWTRNPLIFDNSYFTELLTGE 139
SG EGPWT++P +D Y LL E
Sbjct: 295 GNSKGGEMITSGIEGPWTQSPTEWDMGYINNLLDYE 330
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+P +G +P+ D + + ++V + H++ + +G P+
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHSVAAVNDVDPTVQGLPFDST 203
Query: 124 PLIFDNSYFTE 134
P IFD+ +F E
Sbjct: 204 PGIFDSQFFVE 214
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 98 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 157
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 158 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 217
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 218 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 251
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 471 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 530
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 531 NAGHAVTVPFAPGRADASQ 549
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPENANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|1B82|A Chain A, Pristine Recomb. Lignin Peroxidase H8
pdb|1B82|B Chain B, Pristine Recomb. Lignin Peroxidase H8
Length = 351
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+P +G +P+ D + + ++V + H++ + +G P+
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVWMLSAHSVAAVNDVDPTVQGLPFDST 203
Query: 124 PLIFDNSYFTE 134
P IFD+ +F E
Sbjct: 204 PGIFDSQFFVE 214
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 6 EQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKA 64
E A N GLD V+L +PF ++ ++ D AG V + G P + F GR
Sbjct: 85 ETAFHPNIGLDEIVKLQKPFVQKH-GVTPGDFIAFAGAVALSNCPGAPQMNFFTGRAPAT 143
Query: 65 EPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRN 123
+P +G +P+ D + + ++V + H++ + +G P+
Sbjct: 144 QPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVFMLSAHSVAAVNDVDPTVQGLPFDST 203
Query: 124 PLIFDNSYFTE 134
P IFD+ +F E
Sbjct: 204 PGIFDSQFFVE 214
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPADVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 14 GLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ---E 69
GLD+ + + P T+S AD+ +A + + GGP P GR D +
Sbjct: 76 GLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLAN 135
Query: 70 GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGR 108
LP L+ F Q GL+ D+V LSGGHT GR
Sbjct: 136 QNLPAPFFNLTQLKASFAVQ-GLNTLDLVTLSGGHTFGR 173
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 60/155 (38%), Gaps = 47/155 (30%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ IS+ADL L G V +E G F GR
Sbjct: 132 RFAPLNSWPDNANLDKARRLLWPIKQKYGRAISWADLLILTGNVALESMGFKTFGFAGGR 191
Query: 61 DDKAEPP----------------------------------QEGRL----------PDAK 76
D EP Q G + PD
Sbjct: 192 ADTWEPEDVYWGSEKIWLELSGGPNSRYSGDRQLENPLAAVQMGLIYVNPEGPDGNPDPV 251
Query: 77 QGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH 110
+R F A+M ++D++ VAL +GGHT G+ H
Sbjct: 252 AAARDIRDTF-ARMAMNDEETVALIAGGHTFGKTH 285
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 1 MRLAAEQAHSANNGLDIAVRL--LEPFKEQF-------PTISYADLYQLAGVVGVEVTG- 50
+RLA ++ AN +A L LE + F +S ADL LAG GVE
Sbjct: 505 IRLAPQKDWEANQPEQLAAVLETLEAIRTAFNGAQRGGKQVSLADLIVLAGCAGVEQAAK 564
Query: 51 ----GPDIPFHPGRDDKAE 65
+PF PGR D ++
Sbjct: 565 NAGHAVTVPFAPGRADASQ 583
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 70/213 (32%), Gaps = 88/213 (41%)
Query: 12 NNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTG-------------------- 50
N LD A RL+ P K+++ IS+ADL L G V +E G
Sbjct: 149 NQNLDKARRLIWPIKQKYGNKISWADLMLLTGNVALENMGFKTLGFGGGRADTWQSDEAV 208
Query: 51 --GPDIPFHP--------------GRDDKAEPPQEGR--------------LPDAKQGND 80
G + F P R DK E P PD
Sbjct: 209 YWGAETTFVPQGNDVRYNNSVDINARADKLEKPLAATHMGLIYVNPEGPNGTPDPAASAK 268
Query: 81 HLRQVFGAQMGLSDKDIVAL-SGGHTLGRCH----------------------------- 110
+R+ FG +MG++D + VAL +GGH G+ H
Sbjct: 269 DIREAFG-RMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGMQGLGWHNSVG 327
Query: 111 ------KERSGFEGPWTRNPLIFDNSYFTELLT 137
+ SG E WT+ P + N Y L+
Sbjct: 328 DGNGPNQMTSGLEVIWTKTPTKWSNGYLESLIN 360
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 41/169 (24%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGR-DDKAEPPQEGRLPD--AKQGNDHLRQVFG 87
+S +D+ LA V V+GGPD GR D ++ + L D N
Sbjct: 103 VVSCSDILALAARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALL 162
Query: 88 AQMGLSDKDIVALSGGHTLGRCHKERSGFEGPW--------------------------- 120
++GL D+V +SGGHT+G H S FE
Sbjct: 163 GRLGLDATDLVTISGGHTIGLAHC--SSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDR 220
Query: 121 -----TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEK 164
R P +FDN Y+ +L+ ++GL SD+ L + + RP+VE+
Sbjct: 221 RTVLDVRTPNVFDNKYYIDLV--NREGLFV--SDQDLFTNAITRPIVER 265
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 18/132 (13%)
Query: 14 GLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG-- 70
G ++ + + P +S +D+ LA V + GGP GR D G
Sbjct: 77 GFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVLLGRRDSLTANLAGAN 136
Query: 71 -RLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDN 129
+P + ++ F A +GL+ D+VALSG HT GR R G +F+N
Sbjct: 137 SSIPSPIESLSNITFKFSA-VGLNTNDLVALSGAHTFGR---ARCG----------VFNN 182
Query: 130 SYFTELLTGEKD 141
F TG D
Sbjct: 183 RLFNFSGTGNPD 194
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 63/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 151
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--CHK--------ERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C +G P
Sbjct: 152 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTL 206
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 207 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 151
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 152 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 206
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 207 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 151
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 152 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 206
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 207 RGLCPLNGNLSALVDMDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 151
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 152 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 206
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 207 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 65/173 (37%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDD---------KAEPPQEG-RLPDAKQGND 80
T+S ADL +A V + GGP GR D A PQ LP K D
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLK---D 151
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 152 SFRNV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 206
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 207 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 62/170 (36%), Gaps = 53/170 (31%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDK-------AEPPQEGRLPDAKQGNDHLR 83
T+S ADL +A V + GGP GR D A G Q D R
Sbjct: 95 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFR 154
Query: 84 QVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW------------ 120
V GL+ D+VALSGGHT G+ C + +G P
Sbjct: 155 NV-----GLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGL 209
Query: 121 --------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 210 CPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 255
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 64/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VALSGGH+ G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 63/173 (36%), Gaps = 59/173 (34%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAE----------PPQEGRLPDAKQGND 80
T+S ADL +A V + GGP GR D + P LP K D
Sbjct: 94 TVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLK---D 150
Query: 81 HLRQVFGAQMGLS-DKDIVALSGGHTLGR--C--------HKERSGFEGPW--------- 120
R V GL+ D+VAL GGHT G+ C + +G P
Sbjct: 151 SFRNV-----GLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTL 205
Query: 121 -----------------TRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDP 156
R P IFDN Y+ L E+ GL+Q SD+ L P
Sbjct: 206 RGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL--EEQKGLIQ--SDQELFSSP 254
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 61/161 (37%), Gaps = 43/161 (26%)
Query: 31 TISYADLYQLAGVVGVEVTGGPDIPFHPGRDD--KAEPPQEGRLPDAKQGNDHLRQVFGA 88
+S AD+ LA V ++GGP GR D A LP + D + F A
Sbjct: 91 VVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVA 150
Query: 89 QMGLSDKDIVALSGGHTLG--RCHK------------------ERSGFEGPWTRNPL--- 125
+ L+ D+VALSG HT G +C E S T PL
Sbjct: 151 -VNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCPLGGN 209
Query: 126 -------------IFDNSYFTELLTGEKDGLLQLPSDKALL 153
FDN+YF LL G+ GLL SD+ L
Sbjct: 210 SNITAPLDRSTTDTFDNNYFKNLLEGK--GLLS--SDQILF 246
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 79/223 (35%), Gaps = 78/223 (34%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ +S+ADL AG +E G F GR
Sbjct: 131 RFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGR 190
Query: 61 DDKAEPP-----------------------------QEGRL---PDAKQGND-------H 81
D+ EP Q G + P+ GN
Sbjct: 191 VDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVD 250
Query: 82 LRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE---------------------------- 112
+R+ F +M ++D + AL GGHT G+ H
Sbjct: 251 IRETF-RRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGT 309
Query: 113 -------RSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 148
SG E WT P +DNS F E+L G + L + P+
Sbjct: 310 GTGKDAITSGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSPA 351
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 79/223 (35%), Gaps = 78/223 (34%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ +S+ADL AG +E G F GR
Sbjct: 128 RFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGR 187
Query: 61 DDKAEPP-----------------------------QEGRL---PDAKQGND-------H 81
D+ EP Q G + P+ GN
Sbjct: 188 VDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVD 247
Query: 82 LRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE---------------------------- 112
+R+ F +M ++D + AL GGHT G+ H
Sbjct: 248 IRETF-RRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGT 306
Query: 113 -------RSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 148
SG E WT P +DNS F E+L G + L + P+
Sbjct: 307 GTGKDAITSGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSPA 348
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 79/223 (35%), Gaps = 78/223 (34%)
Query: 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF-PTISYADLYQLAGVVGVEVTGGPDIPFHPGR 60
R A + N LD A RLL P K+++ +S+ADL AG +E G F GR
Sbjct: 128 RFAPLNSWPDNASLDKARRLLWPVKKKYGKKLSWADLIVFAGNCALESMGFKTFGFGFGR 187
Query: 61 DDKAEPP-----------------------------QEGRL---PDAKQGND-------H 81
D+ EP Q G + P+ GN
Sbjct: 188 VDQWEPDEVYWGKEATWLGDERYSGKRDLENPLAAVQMGLIYVNPEGPNGNPDPMAAAVD 247
Query: 82 LRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKE---------------------------- 112
+R+ F +M ++D + AL GGHT G+ H
Sbjct: 248 IRETF-RRMAMNDVETAALIVGGHTFGKTHGAGPADLVGPEPEAAPLEQMGLGWKSSYGT 306
Query: 113 -------RSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPS 148
+G E WT P +DNS F E+L G + L + P+
Sbjct: 307 GTGKDAITTGIEVVWTNTPTKWDNS-FLEILYGYEWELTKSPA 348
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPT------ISYADLYQLAGVVGVEVT 49
+R ++E + + N GL + L+E K++ + ISYAD+ QLAG V+ T
Sbjct: 59 IRFSSELSRAENEGLSDGLSLIEEVKKEIDSISKGGPISYADIIQLAGQSAVKFT 113
>pdb|1U2K|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase- Peroxidase Katg Of Escherichia Coli (I41)
pdb|1U2L|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
pdb|1U2L|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P1)
Length = 309
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 18 AVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGP-----DIPFHPGRDD 62
A+ +LE +++ S AD+ LAGVVGVE +PF PGR D
Sbjct: 92 ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVD 141
>pdb|1U2J|A Chain A, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|B Chain B, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|C Chain C, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|D Chain D, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|E Chain E, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|F Chain F, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|G Chain G, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
pdb|1U2J|H Chain H, Crystal Structure Of The C-Terminal Domain From The
Catalase-Peroxidase Katg Of Escherichia Coli (P21 21 21)
Length = 326
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 18 AVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGP-----DIPFHPGRDD 62
A+ +LE +++ S AD+ LAGVVGVE +PF PGR D
Sbjct: 109 ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVD 158
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 32 ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGA--Q 89
+S AD+ +A V GG GR D D +L + A
Sbjct: 95 VSCADILAVAARDSVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSN 154
Query: 90 MGLSDKDIVALSGGHTLGR 108
G + K++V LSG HT+G+
Sbjct: 155 KGFTTKELVTLSGAHTIGQ 173
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3
A Resolution
Length = 372
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 22 LEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFH 57
L P T+SY L QLA VG EV G D+P
Sbjct: 14 LVPRGSHMSTLSY-TLGQLAAHVGAEVRGDADLPIQ 48
>pdb|3C2Q|A Chain A, Crystal Structure Of Conserved Putative LorSDH PROTEIN
From Methanococcus Maripaludis S2
pdb|3C2Q|B Chain B, Crystal Structure Of Conserved Putative LorSDH PROTEIN
From Methanococcus Maripaludis S2
Length = 345
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 38 YQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGN-----DHLRQVFGAQMGL 92
Y+ G G+ + GGP I G A+ + G + GN D ++G +G+
Sbjct: 130 YKKTGTGGIAIVGGPAIIHTGGGPALAKXVELGYIQAILAGNALATHDIESALYGTSLGV 189
Query: 93 SDKDIVALSGGH 104
+ K ++GGH
Sbjct: 190 NIKTAKPVTGGH 201
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 26.6 bits (57), Expect = 10.0, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 75 AKQGNDHLRQVFGAQMGLSDKDIVALSGGHT---------LGRCHKERSGFEGPWTRNPL 125
K+G V +M ++K I L G+ L K+R RNP
Sbjct: 515 GKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPK 574
Query: 126 IFDNSYFTELLTGEKDGLLQLPSDKA 151
I T L E +G++Q DKA
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKA 600
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,860,300
Number of Sequences: 62578
Number of extensions: 261014
Number of successful extensions: 1034
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 194
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)