Query 029599
Match_columns 191
No_of_seqs 119 out of 1112
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 15:30:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02879 L-ascorbate peroxidas 100.0 1.7E-64 3.7E-69 423.3 18.6 189 1-190 61-249 (251)
2 PLN02364 L-ascorbate peroxidas 100.0 7.6E-63 1.6E-67 413.9 18.4 190 1-191 60-250 (250)
3 PLN02608 L-ascorbate peroxidas 100.0 4.9E-62 1.1E-66 414.9 18.8 189 1-190 58-246 (289)
4 cd00691 ascorbate_peroxidase A 100.0 2E-60 4.4E-65 400.3 18.5 188 1-189 57-251 (253)
5 PLN03030 cationic peroxidase; 100.0 9.6E-55 2.1E-59 374.9 14.0 181 4-190 82-310 (324)
6 cd00692 ligninase Ligninase an 100.0 7E-54 1.5E-58 370.7 18.5 187 2-190 72-277 (328)
7 cd00693 secretory_peroxidase H 100.0 4E-54 8.7E-59 369.6 16.1 183 2-190 60-285 (298)
8 cd00649 catalase_peroxidase_1 100.0 2.7E-51 5.8E-56 360.3 16.5 189 1-190 98-397 (409)
9 cd00314 plant_peroxidase_like 100.0 2.4E-49 5.1E-54 333.5 15.9 184 1-185 46-255 (255)
10 TIGR00198 cat_per_HPI catalase 100.0 1.5E-48 3.3E-53 361.9 16.8 187 1-188 108-402 (716)
11 PRK15061 catalase/hydroperoxid 100.0 5.4E-46 1.2E-50 343.6 16.6 187 1-188 110-408 (726)
12 PF00141 peroxidase: Peroxidas 100.0 1.3E-47 2.8E-52 319.0 4.1 161 2-168 39-230 (230)
13 cd08200 catalase_peroxidase_2 100.0 8.2E-43 1.8E-47 295.9 15.2 184 1-187 58-296 (297)
14 cd08201 plant_peroxidase_like_ 100.0 3E-42 6.5E-47 289.2 12.1 177 1-185 69-264 (264)
15 TIGR00198 cat_per_HPI catalase 100.0 1.9E-37 4.1E-42 288.1 15.4 184 1-187 476-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 6.6E-37 1.4E-41 283.4 15.8 184 1-187 483-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.8E-34 8.3E-39 255.6 15.0 186 1-187 123-416 (730)
18 COG0376 KatG Catalase (peroxid 99.7 1.3E-17 2.8E-22 150.1 10.3 184 1-187 493-725 (730)
19 PRK12346 transaldolase A; Prov 42.3 18 0.00038 31.8 2.0 86 17-105 137-240 (316)
20 PTZ00411 transaldolase-like pr 40.1 25 0.00054 31.1 2.6 86 17-105 148-251 (333)
21 cd00957 Transaldolase_TalAB Tr 38.9 31 0.00068 30.2 3.0 85 17-104 136-238 (313)
22 PRK12309 transaldolase/EF-hand 36.5 35 0.00076 30.8 3.0 86 17-105 142-245 (391)
23 PF08383 Maf_N: Maf N-terminal 34.6 17 0.00038 21.4 0.5 15 88-102 19-34 (35)
24 PHA03388 ORF1_granulin Granuli 29.5 24 0.00052 29.2 0.8 15 122-136 14-28 (248)
25 PRK05269 transaldolase B; Prov 29.5 30 0.00065 30.4 1.4 87 17-106 138-242 (318)
26 PF00043 GST_C: Glutathione S- 28.3 1.7E+02 0.0036 19.5 4.8 36 15-50 33-73 (95)
27 COG1105 FruK Fructose-1-phosph 27.5 97 0.0021 27.2 4.2 48 71-137 105-153 (310)
28 PF09533 DUF2380: Predicted li 26.0 59 0.0013 26.4 2.4 31 80-111 108-138 (188)
29 PF09027 GTPase_binding: GTPas 25.7 24 0.00052 23.9 0.1 12 122-133 31-42 (66)
30 COG0176 MipB Transaldolase [Ca 25.5 82 0.0018 26.6 3.2 67 17-93 103-171 (239)
31 TIGR00874 talAB transaldolase. 25.5 48 0.001 29.1 2.0 86 17-105 136-239 (317)
32 PRK12655 fructose-6-phosphate 24.8 66 0.0014 26.7 2.6 116 17-168 91-210 (220)
33 cd00439 Transaldolase Transald 24.1 33 0.00071 29.0 0.7 76 17-95 127-210 (252)
34 PRK05264 transcriptional repre 23.8 51 0.0011 23.8 1.5 32 150-181 34-67 (105)
35 PHA03389 polh polyhedrin; Prov 23.8 35 0.00075 28.3 0.7 15 122-136 12-26 (246)
36 PF15656 Tox-HDC: Toxin with a 23.6 59 0.0013 24.6 1.9 55 79-137 14-70 (119)
37 COG2877 KdsA 3-deoxy-D-manno-o 22.7 61 0.0013 27.7 2.0 30 14-43 72-116 (279)
38 cd00490 Met_repressor_MetJ Met 22.5 56 0.0012 23.4 1.4 32 150-181 33-66 (103)
39 COG4982 3-oxoacyl-[acyl-carrie 21.5 24 0.00052 34.2 -0.7 56 70-137 693-749 (866)
40 PRK01362 putative translaldola 20.5 55 0.0012 27.0 1.3 72 17-98 89-162 (214)
No 1
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=1.7e-64 Score=423.33 Aligned_cols=189 Identities=79% Similarity=1.320 Sum_probs=184.4
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCCCCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGND 80 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~ 80 (191)
|||++|+++++|.||+.++++|++||+++++|||||||+|||++||+++|||.|+|++||+|+.+++++++||.|+.+++
T Consensus 61 irf~~E~~~~~N~gL~~~~~~i~~iK~~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~~lP~p~~~~~ 140 (251)
T PLN02879 61 IRHPQELAHDANNGLDIAVRLLDPIKELFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEGRLPQATKGVD 140 (251)
T ss_pred ecChhhccCCCcCChHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCcccCCCCCCCCHH
Confidence 79999999999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhhccCCCcccccccccccCCCChHH
Q 029599 81 HLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRP 160 (191)
Q Consensus 81 ~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~~ 160 (191)
++++.| +++||+++|||||+||||||++||.++++.|+|+.||.+|||+||++|+.++.+|+++|+||++|+.|++|++
T Consensus 141 ~l~~~F-~~~Gl~~~dlVALsGaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~~D~~t~~ 219 (251)
T PLN02879 141 HLRDVF-GRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLP 219 (251)
T ss_pred HHHHHH-HHcCCCHHHHeeeeccccccccccccccCCCCCCCCccceeHHHHHHHHcCCcCCCccchhhHHHhcCCcHHH
Confidence 999999 9999999999999999999999999999999999999999999999999986689999999999999999999
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHhCCCCC
Q 029599 161 LVEKYAADEDAFFADYAEAHLKLSELGFAE 190 (191)
Q Consensus 161 ~v~~~A~d~~~f~~~F~~am~Km~~~gv~~ 190 (191)
+|++||.|+++|+++|+.||+||+++|+.+
T Consensus 220 ~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~~ 249 (251)
T PLN02879 220 FVEKYAADEDAFFEDYTEAHLKLSELGFAD 249 (251)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999976
No 2
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.6e-63 Score=413.87 Aligned_cols=190 Identities=83% Similarity=1.337 Sum_probs=183.5
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCCCCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGND 80 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~ 80 (191)
|+|.+|+++++|.||.+++++|++||+++++|||||||+||||+||+++|||.|+|++||+|+++++++++||.|+.+++
T Consensus 60 i~~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~lP~p~~~~~ 139 (250)
T PLN02364 60 MRFDAEQAHGANSGIHIALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEGRLPDATKGCD 139 (250)
T ss_pred ccccccccCCCccCHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccCCCCCCCcCHH
Confidence 68999999999999988999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHh-cCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhhccCCCcccccccccccCCCChH
Q 029599 81 HLRQVFGAQ-MGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFR 159 (191)
Q Consensus 81 ~~~~~F~~~-~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~ 159 (191)
++++.| +. +||+++|||||+||||||.+||.++++.|+|+.||.+|||+||++|+.++.+|+++|+||+.|+.|++|+
T Consensus 140 ~l~~~F-~~~~Gl~~~d~VaLsGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~~~~gll~l~sD~~L~~d~~T~ 218 (250)
T PLN02364 140 HLRDVF-AKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLLQLVSDKALLDDPVFR 218 (250)
T ss_pred HHHHHH-HHhcCCCHHHheeeecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcCCcCCCccccchHHHccCchHH
Confidence 999999 76 6999999999999999999999999999999999999999999999998668999999999999999999
Q ss_pred HHHHHhhhCHHHHHHHHHHHHHHHHhCCCCCC
Q 029599 160 PLVEKYAADEDAFFADYAEAHLKLSELGFAEA 191 (191)
Q Consensus 160 ~~v~~~A~d~~~f~~~F~~am~Km~~~gv~~~ 191 (191)
.+|+.||.|++.|+++|++||+||+++|++++
T Consensus 219 ~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~~~ 250 (250)
T PLN02364 219 PLVEKYAADEDAFFADYAEAHMKLSELGFADA 250 (250)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHccCCCCC
Confidence 99999999999999999999999999999875
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=4.9e-62 Score=414.87 Aligned_cols=189 Identities=71% Similarity=1.166 Sum_probs=182.4
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCCCCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChH
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGND 80 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~ 80 (191)
|+|.+|+++++|.||++++++|++||+++++|||||||+||||+||+++|||.|+|++||+|+++++++++||.|+.+++
T Consensus 58 Ill~~E~~~~~N~gL~~g~~vid~iK~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~~LP~p~~~~~ 137 (289)
T PLN02608 58 IRNEEEYSHGANNGLKIAIDLCEPVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEGRLPDAKKGAK 137 (289)
T ss_pred eecccccCCccccchHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccCCCcCCCCCHH
Confidence 67889999999999988999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHhcCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhhccCCCcccccccccccCCCChHH
Q 029599 81 HLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRP 160 (191)
Q Consensus 81 ~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~~ 160 (191)
++++.| +++||+++|||+|+||||||.+||.+++|.|+|+.||.+|||+||++|+++..+|+++|+||++|+.|++|++
T Consensus 138 ~l~~~F-~~~Gl~~~D~VaLsGAHTiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~d~~T~~ 216 (289)
T PLN02608 138 HLRDVF-YRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTKEPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRP 216 (289)
T ss_pred HHHHHH-HHcCCCHHHHhhhccccccccccccCCCCCCCCCCCCCccChHHHHHHHcCCcCCccccccCHhhhcChhHHH
Confidence 999999 9999999999999999999999999888889999999999999999999875579988899999999999999
Q ss_pred HHHHhhhCHHHHHHHHHHHHHHHHhCCCCC
Q 029599 161 LVEKYAADEDAFFADYAEAHLKLSELGFAE 190 (191)
Q Consensus 161 ~v~~~A~d~~~f~~~F~~am~Km~~~gv~~ 190 (191)
+|+.||.|++.|+++|++||+||+++||.+
T Consensus 217 ~V~~fA~~~~~F~~~Fa~Am~Km~~lgvlt 246 (289)
T PLN02608 217 YVELYAKDEDAFFRDYAESHKKLSELGFTP 246 (289)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999986
No 4
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2e-60 Score=400.28 Aligned_cols=188 Identities=68% Similarity=1.162 Sum_probs=177.6
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCCCCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCC---CCCCCCCCCC
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQ 77 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~---~~~~lP~p~~ 77 (191)
|+|.+|+++++|.+|.+++++|++||+++|+|||||||++|||+||+.+|||.|+|++||+|+.++. ++++||.|+.
T Consensus 57 ~~~~~E~~~~~N~~L~~~~~~i~~iK~~~~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~ 136 (253)
T cd00691 57 IRFDPELNHGANAGLDIARKLLEPIKKKYPDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASK 136 (253)
T ss_pred ccchhhcCCccccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCC
Confidence 5788999999999998899999999999999999999999999999999999999999999999986 6788999999
Q ss_pred ChHHHHHHHHHhcCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhhccC----CCccccccccccc
Q 029599 78 GNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLTGEK----DGLLQLPSDKALL 153 (191)
Q Consensus 78 ~~~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~~~~----~gl~~l~sD~~L~ 153 (191)
+++++++.| +++||+++|||+|+||||||.+||.++++.|+|+.||.+|||+||++|+.+++ ++++.|+||++|+
T Consensus 137 ~~~~l~~~F-~~~Gls~~d~VaLsGaHTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L~ 215 (253)
T cd00691 137 GADHLRDVF-YRMGFNDQEIVALSGAHTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKALL 215 (253)
T ss_pred CHHHHHHHH-HhcCCCHHHHHHhcccceeecccccCCCCCCCCCCCCCcccHHHHHHHhcCCCccCcCcceechhhHHHH
Confidence 999999999 99999999999999999999999988888889899999999999999999832 3355567999999
Q ss_pred CCCChHHHHHHhhhCHHHHHHHHHHHHHHHHhCCCC
Q 029599 154 DDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFA 189 (191)
Q Consensus 154 ~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~~gv~ 189 (191)
.|++|+++|+.||.|+++|+++|++||+||+++||.
T Consensus 216 ~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 216 EDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999986
No 5
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=9.6e-55 Score=374.93 Aligned_cols=181 Identities=30% Similarity=0.444 Sum_probs=163.0
Q ss_pred hhhhcCcCcCChHHHHHHHHHHHHh----CC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCC--CCCCCCCCC
Q 029599 4 AAEQAHSANNGLDIAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP--QEGRLPDAK 76 (191)
Q Consensus 4 ~~E~~~~~N~gl~~~~~~i~~ik~~----~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~--~~~~lP~p~ 76 (191)
.+||++++|.+| ++|++|+.||++ || +|||||||++|||+||.++|||.|+|++||+|+.++. ...+||.|+
T Consensus 82 ~~Ek~a~~N~~l-~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~ 160 (324)
T PLN03030 82 NTEKTALPNLLL-RGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFT 160 (324)
T ss_pred cccccCCCCcCc-chHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCC
Confidence 469999999999 699999999986 67 8999999999999999999999999999999999873 335899999
Q ss_pred CChHHHHHHHHHhcCCCccchhhccCCccccccccCCC-----CCCC---------------------------C-----
Q 029599 77 QGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERS-----GFEG---------------------------P----- 119 (191)
Q Consensus 77 ~~~~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~-----~~~~---------------------------~----- 119 (191)
.+++++++.| +++||+.+|||+|+||||||.+||..+ +|.+ +
T Consensus 161 ~~~~~l~~~F-~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~l 239 (324)
T PLN03030 161 DSIDVQKQKF-AAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIAL 239 (324)
T ss_pred CCHHHHHHHH-HHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccC
Confidence 9999999999 999999999999999999999999632 1110 0
Q ss_pred CCCCCCccChHHHHHHhhccCCCcccccccccccCCCChHHHHHHhhhCH----HHHHHHHHHHHHHHHhCCCCC
Q 029599 120 WTRNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADE----DAFFADYAEAHLKLSELGFAE 190 (191)
Q Consensus 120 ~~~tp~~fDn~Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~----~~f~~~F~~am~Km~~~gv~~ 190 (191)
+..||.+|||+||++|+++ +|+|. |||+|+.|++|+++|++||.|+ +.|+++|++||+|||++||.|
T Consensus 240 D~~Tp~~FDn~Yy~nll~~--rGlL~--SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlT 310 (324)
T PLN03030 240 DTGSSNRFDASFFSNLKNG--RGILE--SDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKT 310 (324)
T ss_pred CCCCCcccccHHHHHHHhc--CCCcC--CchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCC
Confidence 2268999999999999998 89875 9999999999999999999875 599999999999999999976
No 6
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=7e-54 Score=370.67 Aligned_cols=187 Identities=33% Similarity=0.530 Sum_probs=170.1
Q ss_pred CCh-hhhcCcCcCChHHHHHHHHHHHHhCCCCChHHHHHHhHHHHHH-hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 029599 2 RLA-AEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGVE-VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGN 79 (191)
Q Consensus 2 r~~-~E~~~~~N~gl~~~~~~i~~ik~~~~~VS~ADiialAa~~Av~-~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~ 79 (191)
+|. .|+++++|.||+.+++.|++++++++ |||||||+||||+||+ ++|||.|+|++||+|++++.++++||.|+.++
T Consensus 72 l~~~~E~~~~~N~gL~~vvd~lk~~~e~~c-VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g~LP~p~~sv 150 (328)
T cd00692 72 LFDDIETAFHANIGLDEIVEALRPFHQKHN-VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDGLVPEPFDSV 150 (328)
T ss_pred cCCcccccCCCCCCHHHHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcccCCCCCCCCH
Confidence 553 69999999999888888888888775 9999999999999999 56999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCccchhhccCCccccccccCCCCCCC-CCCCCCCccChHHHHHHh-hccC---------------CC
Q 029599 80 DHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEG-PWTRNPLIFDNSYFTELL-TGEK---------------DG 142 (191)
Q Consensus 80 ~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~-~~~~tp~~fDn~Yy~~l~-~~~~---------------~g 142 (191)
+++++.| +++||+.+|||+|+||||||++|...+.+.| +|+.||.+|||+||++++ ++.. +|
T Consensus 151 ~~l~~~F-~~~Gf~~~E~VaLsGAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll~~~~~~~g~~~~~~e~~~~~~g 229 (328)
T cd00692 151 DKILARF-ADAGFSPDELVALLAAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETLLKGTAFPGSGGNQGEVESPLPG 229 (328)
T ss_pred HHHHHHH-HHcCCCHHHHhhhcccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHHHcCCCCCCccccccccccCccc
Confidence 9999999 9999999999999999999999975555555 899999999999999987 4321 36
Q ss_pred cccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHhCCCCC
Q 029599 143 LLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 190 (191)
Q Consensus 143 l~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~~gv~~ 190 (191)
+++|+||++|+.|++|+.+|++||.||++|+++|++||+||+++||+.
T Consensus 230 ~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~ 277 (328)
T cd00692 230 EFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDN 277 (328)
T ss_pred cccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCc
Confidence 678999999999999999999999999999999999999999999985
No 7
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4e-54 Score=369.57 Aligned_cols=183 Identities=39% Similarity=0.639 Sum_probs=165.6
Q ss_pred CChhhhcCcCcCChHHHHHHHHHHHHh----CC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCC--CCCCCC
Q 029599 2 RLAAEQAHSANNGLDIAVRLLEPFKEQ----FP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ--EGRLPD 74 (191)
Q Consensus 2 r~~~E~~~~~N~gl~~~~~~i~~ik~~----~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~--~~~lP~ 74 (191)
++.+|+++++|.|| ++|++|++||++ || +|||||||++|||+||+++|||.|+|++||+|+..+.+ .++||.
T Consensus 60 ~~~~E~~~~~N~~l-~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~ 138 (298)
T cd00693 60 NNTSEKDAPPNLSL-RGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPS 138 (298)
T ss_pred CCchhccCCCCCCc-chhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCC
Confidence 35689999999999 699999999986 56 89999999999999999999999999999999987643 368999
Q ss_pred CCCChHHHHHHHHHhcCCCccchhhccCCccccccccCC-----CCCCC--------------------CC---------
Q 029599 75 AKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKER-----SGFEG--------------------PW--------- 120 (191)
Q Consensus 75 p~~~~~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~-----~~~~~--------------------~~--------- 120 (191)
|+.+++++++.| +++||+++|||||+||||||.+||.. ++|.| |+
T Consensus 139 p~~~~~~l~~~F-~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~ 217 (298)
T cd00693 139 PFFSVSQLISLF-ASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVP 217 (298)
T ss_pred cccCHHHHHHHH-HHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCcccc
Confidence 999999999999 99999999999999999999999952 23321 12
Q ss_pred -C-CCCCccChHHHHHHhhccCCCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHhCCCCC
Q 029599 121 -T-RNPLIFDNSYFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELGFAE 190 (191)
Q Consensus 121 -~-~tp~~fDn~Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~~gv~~ 190 (191)
+ .||.+|||+||++|+.+ +|+| +||++|+.|++|+++|++||.|++.|+++|++||+||+++||.+
T Consensus 218 lD~~Tp~~FDn~Yy~~l~~~--~glL--~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~t 285 (298)
T cd00693 218 LDPGTPNTFDNSYYKNLLAG--RGLL--TSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLT 285 (298)
T ss_pred CCCCCCCccccHHHHHHHhc--ccCc--cCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCcc
Confidence 2 78999999999999998 8886 59999999999999999999999999999999999999999976
No 8
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=2.7e-51 Score=360.33 Aligned_cols=189 Identities=38% Similarity=0.625 Sum_probs=171.2
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCC------------
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------ 67 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~------------ 67 (191)
|||++|++++.|.||+++..+|++||++++ .||+||+|+||+++||+.+|||.|+|.+||.|+..+.
T Consensus 98 iRf~pe~~~~~N~gL~~a~~~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~ 177 (409)
T cd00649 98 QRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWL 177 (409)
T ss_pred cccccccCcHhhhhHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcc
Confidence 899999999999999999999999999997 7999999999999999999999999999999997642
Q ss_pred --------------------------CCC--CCCCCCCChHHHHHHHHHhcCCCccchhhc-cCCccccccccCC-----
Q 029599 68 --------------------------QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVAL-SGGHTLGRCHKER----- 113 (191)
Q Consensus 68 --------------------------~~~--~lP~p~~~~~~~~~~F~~~~Gl~~~e~VaL-~GaHtiG~~~~~~----- 113 (191)
+++ .||.|..++.+|++.| .+||||++||||| +||||||++||..
T Consensus 178 ~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F-~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rl 256 (409)
T cd00649 178 ADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASHV 256 (409)
T ss_pred cccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHH-HHcCCCHHHHeeeccCCcceeecCcccccccC
Confidence 233 6899999999999999 9999999999999 5999999999952
Q ss_pred ------------------------------CCCCCCCCCCCCccChHHHHHHhhcc------------------------
Q 029599 114 ------------------------------SGFEGPWTRNPLIFDNSYFTELLTGE------------------------ 139 (191)
Q Consensus 114 ------------------------------~~~~~~~~~tp~~fDn~Yy~~l~~~~------------------------ 139 (191)
++++|+|+.||.+|||+||++|+..+
T Consensus 257 g~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~ 336 (409)
T cd00649 257 GPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTV 336 (409)
T ss_pred CCCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccC
Confidence 25667899999999999999999832
Q ss_pred --------CCCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHH--HhCCCCC
Q 029599 140 --------KDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKL--SELGFAE 190 (191)
Q Consensus 140 --------~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km--~~~gv~~ 190 (191)
+.++.+|+||++|+.|++++++|++||.|++.|+++|++||.|| +++|+++
T Consensus 337 ~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~ 397 (409)
T cd00649 337 PDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKS 397 (409)
T ss_pred CCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchh
Confidence 12566778999999999999999999999999999999999999 4677654
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.4e-49 Score=333.50 Aligned_cols=184 Identities=48% Similarity=0.779 Sum_probs=169.1
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCC---CCChHHHHHHhHHHHHHhc--CCCCCCCCCCCCCCC-----CCCCCC
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFP---TISYADLYQLAGVVGVEVT--GGPDIPFHPGRDDKA-----EPPQEG 70 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~---~VS~ADiialAa~~Av~~~--ggP~~~v~~GR~D~~-----~~~~~~ 70 (191)
|+|.+|+++|+|.||.+++++|++||++++ +|||||||++|+++||+.+ |||.|+|++||+|+. .+++.+
T Consensus 46 i~~~~e~~~~~N~~l~~~~~~l~~ik~~~~~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~ 125 (255)
T cd00314 46 IRFEPELDRPENGGLDKALRALEPIKSAYDGGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEG 125 (255)
T ss_pred EeccccccCcccccHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCC
Confidence 678889999999999899999999999985 7999999999999999999 999999999999999 566778
Q ss_pred CCCCCCCChHHHHHHHHHhcCCCccchhhcc-CCccc-cccccCCCCCC--CCCCCCCCccChHHHHHHhhccC------
Q 029599 71 RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTL-GRCHKERSGFE--GPWTRNPLIFDNSYFTELLTGEK------ 140 (191)
Q Consensus 71 ~lP~p~~~~~~~~~~F~~~~Gl~~~e~VaL~-GaHti-G~~~~~~~~~~--~~~~~tp~~fDn~Yy~~l~~~~~------ 140 (191)
++|.|..+++++++.| .++||+++|||||+ |+||+ |.+||..++.. .+|+.||.+|||+||++|+.++.
T Consensus 126 ~~p~~~~~~~~~~~~F-~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~l~~~~~~~~~~~ 204 (255)
T cd00314 126 LLPNETSSATELRDKF-KRMGLSPSELVALSAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKNLLDMNWEWRVGS 204 (255)
T ss_pred CCCCccchHHHHHHHH-HHcCCCHHHHHhhccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHHHhcCCcccccCC
Confidence 8899999999999999 89999999999999 99999 99999876554 67889999999999999998742
Q ss_pred ------CCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHh
Q 029599 141 ------DGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE 185 (191)
Q Consensus 141 ------~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~ 185 (191)
+++..|+||+.|+.|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 205 ~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 205 PDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 233456799999999999999999999999999999999999985
No 10
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.5e-48 Score=361.95 Aligned_cols=187 Identities=40% Similarity=0.632 Sum_probs=167.4
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCC------------
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPP------------ 67 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~------------ 67 (191)
|||++|++|+.|.+|+++..+|++||++|| .|||||||+|||++||+.+|||+|+|.+||+|+.++.
T Consensus 108 iRf~P~~sw~~N~~Ldka~~lL~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l 187 (716)
T TIGR00198 108 QRFAPLNSWPDNVNLDKARRLLWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWL 187 (716)
T ss_pred eecccccCchhhhhHHHHHHHHHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchh
Confidence 899999999999999999999999999998 8999999999999999999999999999999995431
Q ss_pred -------------------------CCC--CCCCCCCChHHHHHHHHHhcCCCccchhhcc-CCccccccccCC------
Q 029599 68 -------------------------QEG--RLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER------ 113 (191)
Q Consensus 68 -------------------------~~~--~lP~p~~~~~~~~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~------ 113 (191)
+.+ .+|.|..++++|++.| .++|||++|||||+ ||||||++||..
T Consensus 188 ~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F-~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg 266 (716)
T TIGR00198 188 TSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTF-ARMGMNDEETVALIAGGHTVGKCHGAGPAELIG 266 (716)
T ss_pred hccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHH-HHcCCChHHHeeeecCceeccccCCCcccccCC
Confidence 122 6899999999999999 99999999999995 999999999952
Q ss_pred -----------------------------CCCCCCCCCCCCccChHHHHHHhhcc-------------------------
Q 029599 114 -----------------------------SGFEGPWTRNPLIFDNSYFTELLTGE------------------------- 139 (191)
Q Consensus 114 -----------------------------~~~~~~~~~tp~~fDn~Yy~~l~~~~------------------------- 139 (191)
++++|+|+.||.+|||+||++|+.++
T Consensus 267 ~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~ 346 (716)
T TIGR00198 267 PDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDV 346 (716)
T ss_pred CCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccc
Confidence 34457899999999999999999751
Q ss_pred -----CCCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHh--CCC
Q 029599 140 -----KDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE--LGF 188 (191)
Q Consensus 140 -----~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~--~gv 188 (191)
+....+|.||++|..|++++++|+.||.|++.|+++|++||.||++ +|.
T Consensus 347 ~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp 402 (716)
T TIGR00198 347 EDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGP 402 (716)
T ss_pred cccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCc
Confidence 0124556799999999999999999999999999999999999995 553
No 11
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=5.4e-46 Score=343.58 Aligned_cols=187 Identities=37% Similarity=0.612 Sum_probs=167.7
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCC-----------
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------- 68 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~----------- 68 (191)
|||++|++|+.|.||+++..+|++||++++ .||+||+|+||+.+||+.+|||+|+|.+||.|...+..
T Consensus 110 iRf~pe~~w~~N~gL~ka~~~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l 189 (726)
T PRK15061 110 QRFAPLNSWPDNVNLDKARRLLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWL 189 (726)
T ss_pred ccCcccccchhhhhHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccc
Confidence 899999999999999999999999999997 79999999999999999999999999999999876421
Q ss_pred --C----------------------------CCCCCCCCChHHHHHHHHHhcCCCccchhhcc-CCccccccccCC----
Q 029599 69 --E----------------------------GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER---- 113 (191)
Q Consensus 69 --~----------------------------~~lP~p~~~~~~~~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~---- 113 (191)
+ .-+|.|..++.++++.| .+||||++|||||+ ||||||++||..
T Consensus 190 ~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF-~RMGmnDeEtVALiaGgHT~GkaHca~~~~r 268 (726)
T PRK15061 190 GGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGDASH 268 (726)
T ss_pred ccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHH-HHcCCCHHHheeeccCCceeeeCCCcCcccc
Confidence 1 12688999999999999 99999999999995 999999999952
Q ss_pred -------------------------------CCCCCCCCCCCCccChHHHHHHhhcc-----------------------
Q 029599 114 -------------------------------SGFEGPWTRNPLIFDNSYFTELLTGE----------------------- 139 (191)
Q Consensus 114 -------------------------------~~~~~~~~~tp~~fDn~Yy~~l~~~~----------------------- 139 (191)
+++.|+|+.||.+|||+||++|+.++
T Consensus 269 lgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~ 348 (726)
T PRK15061 269 VGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDT 348 (726)
T ss_pred cCCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCcccccc
Confidence 24567899999999999999999852
Q ss_pred ---------CCCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHh--CCC
Q 029599 140 ---------KDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE--LGF 188 (191)
Q Consensus 140 ---------~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~--~gv 188 (191)
+..+++|.||++|..||+++++|++||.|++.|+++|++||.||.. +|.
T Consensus 349 ~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp 408 (726)
T PRK15061 349 VPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGP 408 (726)
T ss_pred CCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCc
Confidence 1146778899999999999999999999999999999999999965 553
No 12
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.3e-47 Score=319.02 Aligned_cols=161 Identities=43% Similarity=0.750 Sum_probs=139.2
Q ss_pred CChhhhcCcCcCChHHHHHHHHHHHHhC----C-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCCCC--CCCC
Q 029599 2 RLAAEQAHSANNGLDIAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEG--RLPD 74 (191)
Q Consensus 2 r~~~E~~~~~N~gl~~~~~~i~~ik~~~----~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~~~--~lP~ 74 (191)
++.+|+++++|.||.+++++|++||+++ | +|||||||++||++||+.+|||.|+|++||+|+.++++.+ +||.
T Consensus 39 ~~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~ 118 (230)
T PF00141_consen 39 LFSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPS 118 (230)
T ss_dssp GSTTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSST
T ss_pred ccccccccccccCcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccc
Confidence 5689999999999988999999999974 5 6999999999999999999999999999999999997643 5999
Q ss_pred CCCChHHHHHHHHHhcCCCccchhhccCCccccccccCCCC-------------CC-----------CCCCCCCCccChH
Q 029599 75 AKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHKERSG-------------FE-----------GPWTRNPLIFDNS 130 (191)
Q Consensus 75 p~~~~~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~-------------~~-----------~~~~~tp~~fDn~ 130 (191)
|..+++++++.| +++||+++|||||+||||||.+||..+. |. -+++ ||.+|||+
T Consensus 119 p~~~~~~l~~~F-~~~Gls~~e~VaLsGaHTiG~~~c~~f~rl~~~~dp~~d~~~~~~~C~~~~~~~~~~d-tp~~fDN~ 196 (230)
T PF00141_consen 119 PTDSVDQLLAFF-ARKGLSAEEMVALSGAHTIGRAHCSSFSRLYFPPDPTMDPGYAGQNCNSGGDNGVPLD-TPTVFDNS 196 (230)
T ss_dssp TTSHHHHHHHHH-HHTT--HHHHHHHHGGGGSTEESGGCTGGTSCSSGTTSTHHHHHHSSSTSGCTCEESS-STTS-SSH
T ss_pred cccccchhhhhh-hccccchhhhcceecccccccceeccccccccccccccccccceeccCCCcccccccc-CCCcchhH
Confidence 999999999999 9999999999999999999999997221 00 0234 89999999
Q ss_pred HHHHHhhccCCCcccccccccccCCCChHHHHHHhhhC
Q 029599 131 YFTELLTGEKDGLLQLPSDKALLDDPVFRPLVEKYAAD 168 (191)
Q Consensus 131 Yy~~l~~~~~~gl~~l~sD~~L~~d~~t~~~v~~~A~d 168 (191)
||++|+.+ +|+|. ||++|+.|++|+++|++||+|
T Consensus 197 Yy~~ll~~--~gll~--SD~~L~~d~~t~~~V~~yA~d 230 (230)
T PF00141_consen 197 YYKNLLNG--RGLLP--SDQALLNDPETRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHT--EEEEH--HHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHhcC--CCcCH--HHHHHhcCHHHHHHHHHHhcC
Confidence 99999998 78875 999999999999999999976
No 13
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=8.2e-43 Score=295.92 Aligned_cols=184 Identities=29% Similarity=0.448 Sum_probs=160.9
Q ss_pred CCChhhhcCcCcCC--hHHHHHHHHHHHHhCC-------CCChHHHHHHhHHHHHHhcCC-----CCCCCCCCCCCCCCC
Q 029599 1 MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP-------TISYADLYQLAGVVGVEVTGG-----PDIPFHPGRDDKAEP 66 (191)
Q Consensus 1 ir~~~E~~~~~N~g--l~~~~~~i~~ik~~~~-------~VS~ADiialAa~~Av~~~gg-----P~~~v~~GR~D~~~~ 66 (191)
|||.+|++|+.|.+ |.+++.++++||+++| .||.||+|+||+.+||+.+|| |.|+|.+||.|++.+
T Consensus 58 iRl~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~ 137 (297)
T cd08200 58 IRLAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQE 137 (297)
T ss_pred ccCccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccC
Confidence 89999999999999 9999999999999997 799999999999999999999 999999999999986
Q ss_pred CC--C---CCCCCCCC------------ChHHHHHHHHHhcCCCccchhhccCCc-cccccccCCCCCCCCCCCCCCccC
Q 029599 67 PQ--E---GRLPDAKQ------------GNDHLRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFD 128 (191)
Q Consensus 67 ~~--~---~~lP~p~~------------~~~~~~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~~~~~~tp~~fD 128 (191)
.. + ..+|.++. ..+.|++.| .++||+++|||||+||| ++|.+|. ++ +.|+|+.+|.+||
T Consensus 138 ~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f-~rlglsd~EmvaL~Gg~r~lG~~~~-~s-~~G~wT~~p~~f~ 214 (297)
T cd08200 138 QTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKA-QLLTLTAPEMTVLVGGLRVLGANYG-GS-KHGVFTDRPGVLT 214 (297)
T ss_pred CCCcccccccCCCCcccccccccCCCCCHHHHHHHHH-HhCCCChHHHhheecchhhcccCCC-CC-CCCCCcCCCCccc
Confidence 32 1 23454332 346799999 99999999999999998 7999997 44 4699999999999
Q ss_pred hHHHHHHhhcc------------------CCCc---ccccccccccCCCChHHHHHHhhhC--HHHHHHHHHHHHHHHHh
Q 029599 129 NSYFTELLTGE------------------KDGL---LQLPSDKALLDDPVFRPLVEKYAAD--EDAFFADYAEAHLKLSE 185 (191)
Q Consensus 129 n~Yy~~l~~~~------------------~~gl---~~l~sD~~L~~d~~t~~~v~~~A~d--~~~f~~~F~~am~Km~~ 185 (191)
|.||++|+..+ ..|. +++++|..|..|++.|++|+.||.| +++|++||++||.||++
T Consensus 215 N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klme 294 (297)
T cd08200 215 NDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMN 294 (297)
T ss_pred cHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 99999999521 0122 2478999999999999999999999 99999999999999998
Q ss_pred CC
Q 029599 186 LG 187 (191)
Q Consensus 186 ~g 187 (191)
+.
T Consensus 295 ld 296 (297)
T cd08200 295 LD 296 (297)
T ss_pred cC
Confidence 74
No 14
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3e-42 Score=289.18 Aligned_cols=177 Identities=28% Similarity=0.459 Sum_probs=151.2
Q ss_pred CCChhhhcCcCcCChH--HHHHHHHHHHHhCCCCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 029599 1 MRLAAEQAHSANNGLD--IAVRLLEPFKEQFPTISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQG 78 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~--~~~~~i~~ik~~~~~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~ 78 (191)
|+| |...++|.|+. ..+..++.|+. +.|||||||||||++||+.+|||.|+|++||+|++++++.+ ||.|+.+
T Consensus 69 Ill--e~~~~En~G~~~n~~l~~~~~i~~--~~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~g-lP~P~~~ 143 (264)
T cd08201 69 IQY--ELDRPENIGSGFNTTLNFFVNFYS--PRSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQAG-VPEPQTD 143 (264)
T ss_pred eee--cCCChhhccCchhhccccceeecc--CccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccccc-CCCCccC
Confidence 455 56677888765 23444444433 47999999999999999999999999999999999998876 9999999
Q ss_pred hHHHHHHHHHhcCCCccchhhccC-CccccccccCCC------CCC--C--CCCCCCCccChHHHHHHhhccCCCcccc-
Q 029599 79 NDHLRQVFGAQMGLSDKDIVALSG-GHTLGRCHKERS------GFE--G--PWTRNPLIFDNSYFTELLTGEKDGLLQL- 146 (191)
Q Consensus 79 ~~~~~~~F~~~~Gl~~~e~VaL~G-aHtiG~~~~~~~------~~~--~--~~~~tp~~fDn~Yy~~l~~~~~~gl~~l- 146 (191)
++++++.| +++||+++|||+|+| |||||++||..+ ++. + ||++||.+|||+||.++++|+++|+|+|
T Consensus 144 v~~l~~~F-a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~~p~dstp~~FDn~~f~E~l~g~~~~~L~~~ 222 (264)
T cd08201 144 LGTTTESF-RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTVLQFFDTTIQFDNKVVTEYLSGTTNNPLVVG 222 (264)
T ss_pred HHHHHHHH-HHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCCCCCCCCccccchHHHHHHhcCCCCCceeec
Confidence 99999999 999999999999995 999999999865 333 3 8999999999999999999988888754
Q ss_pred -----cccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHh
Q 029599 147 -----PSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSE 185 (191)
Q Consensus 147 -----~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~ 185 (191)
.||..++.... ...++.+| +++.|.+.++..+.||++
T Consensus 223 ~~~~~~sd~r~f~~d~-n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 223 PNNTTNSDLRIFSSDG-NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCCccchhhheecCc-cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 58888887653 66788888 799999999999999985
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.9e-37 Score=288.07 Aligned_cols=184 Identities=28% Similarity=0.455 Sum_probs=159.1
Q ss_pred CCChhhhcCcCc--CChHHHHHHHHHHHHhCC--CCChHHHHHHhHHHHHHhc---CCC--CCCCCCCCCCCCCCC--CC
Q 029599 1 MRLAAEQAHSAN--NGLDIAVRLLEPFKEQFP--TISYADLYQLAGVVGVEVT---GGP--DIPFHPGRDDKAEPP--QE 69 (191)
Q Consensus 1 ir~~~E~~~~~N--~gl~~~~~~i~~ik~~~~--~VS~ADiialAa~~Av~~~---ggP--~~~v~~GR~D~~~~~--~~ 69 (191)
|||++|++|+.| .||.+++.+|++||+++| .||.||+|+||+.+||+.+ ||| .|+|.+||.|++... ++
T Consensus 476 iRl~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~ 555 (716)
T TIGR00198 476 IRLEPQKNWPVNEPTRLAKVLAVLEKIQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAE 555 (716)
T ss_pred eecchhcCcccCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCcc
Confidence 899999999999 899999999999999998 8999999999999999998 897 689999999999863 33
Q ss_pred CCC---CCCC------------CChHHHHHHHHHhcCCCccchhhccCCc-cccccccCCCCCCCCCCCCCCccChHHHH
Q 029599 70 GRL---PDAK------------QGNDHLRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFT 133 (191)
Q Consensus 70 ~~l---P~p~------------~~~~~~~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~~~~~~tp~~fDn~Yy~ 133 (191)
+.. |.++ ...+.|++.| .++|||+.|||||+||| ++|++|..+ +.|+|+.+|.+|||.||+
T Consensus 556 ~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a-~~lglt~~EmvaL~Gg~r~lG~~~~~s--~~G~~T~~p~~f~NdfF~ 632 (716)
T TIGR00198 556 SFTPLEPIADGFRNYLKRDYAVTPEELLLDKA-QLLTLTAPEMTVLIGGMRVLGANHGGS--KHGVFTDRVGVLSNDFFV 632 (716)
T ss_pred ccccCCCCCcccchhccccccCCHHHHHHHHH-HhCCCChHHHHheecchhhccccCCCC--CCCCCcCCCCccccHHHH
Confidence 222 2211 2345688999 99999999999999995 999999853 469999999999999999
Q ss_pred HHhhcc------------------CCCcccc---cccccccCCCChHHHHHHhhhCH--HHHHHHHHHHHHHHHhCC
Q 029599 134 ELLTGE------------------KDGLLQL---PSDKALLDDPVFRPLVEKYAADE--DAFFADYAEAHLKLSELG 187 (191)
Q Consensus 134 ~l~~~~------------------~~gl~~l---~sD~~L~~d~~t~~~v~~~A~d~--~~f~~~F~~am~Km~~~g 187 (191)
+|+..+ ..|.+++ ++|..|..|++.|++|+.||.|+ ++|++||++||.|++++|
T Consensus 633 ~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm~ld 709 (716)
T TIGR00198 633 NLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVMNLD 709 (716)
T ss_pred HHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHHhCC
Confidence 999621 0133333 78999999999999999999997 899999999999999987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.6e-37 Score=283.36 Aligned_cols=184 Identities=29% Similarity=0.465 Sum_probs=159.9
Q ss_pred CCChhhhcCcCcC--ChHHHHHHHHHHHHhC-------CCCChHHHHHHhHHHHHHhc---CC--CCCCCCCCCCCCCCC
Q 029599 1 MRLAAEQAHSANN--GLDIAVRLLEPFKEQF-------PTISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEP 66 (191)
Q Consensus 1 ir~~~E~~~~~N~--gl~~~~~~i~~ik~~~-------~~VS~ADiialAa~~Av~~~---gg--P~~~v~~GR~D~~~~ 66 (191)
|||++|++|+.|. +|.+++.+|++||+++ |.||.||+|+||+.+||+.+ || |.|+|.+||.|++..
T Consensus 483 IRl~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~ 562 (726)
T PRK15061 483 IRLAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQE 562 (726)
T ss_pred eecccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccC
Confidence 8999999999999 9999999999999998 57999999999999999998 58 999999999999986
Q ss_pred CCC-----CCCCCCC------------CChHHHHHHHHHhcCCCccchhhccCCc-cccccccCCCCCCCCCCCCCCccC
Q 029599 67 PQE-----GRLPDAK------------QGNDHLRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFD 128 (191)
Q Consensus 67 ~~~-----~~lP~p~------------~~~~~~~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~~~~~~tp~~fD 128 (191)
..+ ..+|..+ ...+.|++.| .++||++.|||||+||| ++|.+|.. + +.|+|+.+|.+||
T Consensus 563 ~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a-~~lglt~~EmvaL~Gg~r~Lg~~~~~-S-~~G~~T~~p~~fs 639 (726)
T PRK15061 563 QTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKA-QLLTLTAPEMTVLVGGLRVLGANYGG-S-KHGVFTDRPGVLT 639 (726)
T ss_pred CCCcccccccCCCCccccccccccCCCCHHHHHHHHH-HhCCCChHHHhheecchhhcccCCCC-C-CCCCCcCCCCccc
Confidence 322 2456543 1236799999 99999999999999997 78999964 4 4699999999999
Q ss_pred hHHHHHHhhcc--------CC----------Ccc---cccccccccCCCChHHHHHHhhhC--HHHHHHHHHHHHHHHHh
Q 029599 129 NSYFTELLTGE--------KD----------GLL---QLPSDKALLDDPVFRPLVEKYAAD--EDAFFADYAEAHLKLSE 185 (191)
Q Consensus 129 n~Yy~~l~~~~--------~~----------gl~---~l~sD~~L~~d~~t~~~v~~~A~d--~~~f~~~F~~am~Km~~ 185 (191)
|.||++|+..+ .. |.+ .+++|..|.+|++.|++|+.||.| +++|++||++||.|+++
T Consensus 640 NdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvme 719 (726)
T PRK15061 640 NDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMN 719 (726)
T ss_pred cHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 99999999521 01 222 247899999999999999999999 99999999999999999
Q ss_pred CC
Q 029599 186 LG 187 (191)
Q Consensus 186 ~g 187 (191)
+|
T Consensus 720 ld 721 (726)
T PRK15061 720 LD 721 (726)
T ss_pred CC
Confidence 87
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-34 Score=255.64 Aligned_cols=186 Identities=38% Similarity=0.621 Sum_probs=166.6
Q ss_pred CCChhhhcCcCcCChHHHHHHHHHHHHhCC-CCChHHHHHHhHHHHHHhcCCCCCCCCCCCCCCCCCCC-----------
Q 029599 1 MRLAAEQAHSANNGLDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEPPQ----------- 68 (191)
Q Consensus 1 ir~~~E~~~~~N~gl~~~~~~i~~ik~~~~-~VS~ADiialAa~~Av~~~ggP~~~v~~GR~D~~~~~~----------- 68 (191)
+||+++..||.|.+|++++.+|++||++|+ .+|+||+++|++.+|++.+|++++.|..||.|..++..
T Consensus 123 qRFaPlnSWPDN~nLDKarRLLWPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl 202 (730)
T COG0376 123 QRFAPLNSWPDNANLDKARRLLWPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWL 202 (730)
T ss_pred eecccccCCCcccchHHHHHHhhhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCcccccc
Confidence 699999999999999999999999999998 99999999999999999999999999999999988742
Q ss_pred ---------------------------C--CCCCCCCCChHHHHHHHHHhcCCCccchhhcc-CCccccccccCC-----
Q 029599 69 ---------------------------E--GRLPDAKQGNDHLRQVFGAQMGLSDKDIVALS-GGHTLGRCHKER----- 113 (191)
Q Consensus 69 ---------------------------~--~~lP~p~~~~~~~~~~F~~~~Gl~~~e~VaL~-GaHtiG~~~~~~----- 113 (191)
+ +..|.|..+..+++..| ++|+++++|+|||+ ||||+|.+|...
T Consensus 203 ~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dIRetF-aRMaMNDeETVALiaGGHtfGKtHGag~a~~v 281 (730)
T COG0376 203 GDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETF-ARMAMNDEETVALIAGGHTFGKTHGAGPASNV 281 (730)
T ss_pred ccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHHHHHH-HHhcCCcHhhhhhhhcccccccccCCCchhhc
Confidence 1 23577777899999999 99999999999997 699999999742
Q ss_pred ------------------------------CCCCCCCCCCCCccChHHHHHHhhcc------------------------
Q 029599 114 ------------------------------SGFEGPWTRNPLIFDNSYFTELLTGE------------------------ 139 (191)
Q Consensus 114 ------------------------------~~~~~~~~~tp~~fDn~Yy~~l~~~~------------------------ 139 (191)
+|..++|+.+|+.|||.||.+|+..+
T Consensus 282 g~ePe~a~ie~qGlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~p 361 (730)
T COG0376 282 GPEPEAAPIEQQGLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIP 361 (730)
T ss_pred CCCccccchhhhccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCC
Confidence 12345799999999999999999642
Q ss_pred -------CCCcccccccccccCCCChHHHHHHhhhCHHHHHHHHHHHHHHHHhCC
Q 029599 140 -------KDGLLQLPSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHLKLSELG 187 (191)
Q Consensus 140 -------~~gl~~l~sD~~L~~d~~t~~~v~~~A~d~~~f~~~F~~am~Km~~~g 187 (191)
+..++||.+|.+|.-||.++.+.++|..|++.|.+.|++||.||..-+
T Consensus 362 d~~dp~~~~~p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 362 DAHDPSKKHGPMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred CCCCcccccCceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 126778999999999999999999999999999999999999998744
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.3e-17 Score=150.06 Aligned_cols=184 Identities=29% Similarity=0.454 Sum_probs=144.6
Q ss_pred CCChhhhcCcCcCC--hHHHHHHHHHHHHhCC-CCChHHHHHHhHHHHHHhc---CC--CCCCCCCCCCCCCCCCC--C-
Q 029599 1 MRLAAEQAHSANNG--LDIAVRLLEPFKEQFP-TISYADLYQLAGVVGVEVT---GG--PDIPFHPGRDDKAEPPQ--E- 69 (191)
Q Consensus 1 ir~~~E~~~~~N~g--l~~~~~~i~~ik~~~~-~VS~ADiialAa~~Av~~~---gg--P~~~v~~GR~D~~~~~~--~- 69 (191)
||+++.++|+.|.. |.+.+.+++.|++++. .||.||+|+|++..||+.+ +| -.+||.+||.|+.+... .
T Consensus 493 irLaPqkdWevN~P~~l~kvl~~le~iq~~fnkkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~s 572 (730)
T COG0376 493 IRLAPQKDWEVNQPAELAKVLAVLEKIQKEFNKKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVES 572 (730)
T ss_pred EeecccccCCCCCHHHHHHHHHHHHHHHHHhcCccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhh
Confidence 89999999999964 7789999999999997 6999999999999999963 45 36789999999988621 1
Q ss_pred --CCCCCCC-----------CCh-HHHHHHHHHhcCCCccchhhccCCc-cccccccCCCCCCCCCCCCCCccChHHHHH
Q 029599 70 --GRLPDAK-----------QGN-DHLRQVFGAQMGLSDKDIVALSGGH-TLGRCHKERSGFEGPWTRNPLIFDNSYFTE 134 (191)
Q Consensus 70 --~~lP~p~-----------~~~-~~~~~~F~~~~Gl~~~e~VaL~GaH-tiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~ 134 (191)
-.-|..+ .+. .-|+++- +..+|+.-||++|+||. .+|.-+... -.|.++..|.++.|.||.|
T Consensus 573 f~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA-qlL~LtapemtVLiGGlRvLg~n~g~s--~~GVfT~~pg~LtndFFvn 649 (730)
T COG0376 573 FAVLEPIADGFRNYVKKDYVLTPEELLVDKA-QLLTLTAPEMTVLIGGLRVLGANYGGS--KHGVFTDRPGVLTNDFFVN 649 (730)
T ss_pred hhcccccchhhhhhccCCCcCCHHHHHHHHH-HHhccCCccceEEEcceEeeccCCCCC--ccceeccCcccccchhhhh
Confidence 1112211 233 3467888 89999999999999987 566554421 1467889999999999999
Q ss_pred Hhhcc--------CCCcc-------------cccccccccCCCChHHHHHHhhhC--HHHHHHHHHHHHHHHHhCC
Q 029599 135 LLTGE--------KDGLL-------------QLPSDKALLDDPVFRPLVEKYAAD--EDAFFADYAEAHLKLSELG 187 (191)
Q Consensus 135 l~~~~--------~~gl~-------------~l~sD~~L~~d~~t~~~v~~~A~d--~~~f~~~F~~am~Km~~~g 187 (191)
|+.-. .++++ .-..|..+-+++..|.+.+.||.| +++|.+||+.||.|..++.
T Consensus 650 LlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 650 LLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred hhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 99631 12222 113788888999999999999997 7999999999999998864
No 19
>PRK12346 transaldolase A; Provisional
Probab=42.33 E-value=18 Score=31.82 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCC--CCCC-CCCC---CChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQ--EGRL-PDAK---QGNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~--~~~l-P~p~---~~~~~~~~~F~~ 88 (191)
.|+..+..++++ .|+|-=.+.|....|+. .+|-..+..++||-|-..-.. ...+ +... ..+.++...| +
T Consensus 137 eGi~A~~~L~~~--GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 213 (316)
T PRK12346 137 EGIRAAEELEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY-K 213 (316)
T ss_pred HHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHH-H
Confidence 456666666654 34554444555554444 467788999999988753211 1112 2222 3456677888 7
Q ss_pred hcCCC----------ccchhhccCCcc
Q 029599 89 QMGLS----------DKDIVALSGGHT 105 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaHt 105 (191)
..|+. .+|+.+|.|+|.
T Consensus 214 ~~~~~T~Vm~ASfRn~~qi~alaG~d~ 240 (316)
T PRK12346 214 QHRYETIVMGASFRRTEQILALAGCDR 240 (316)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCCE
Confidence 77753 567778888884
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=40.08 E-value=25 Score=31.14 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCC---CCCCCCCC---ChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQE---GRLPDAKQ---GNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~---~~lP~p~~---~~~~~~~~F~~ 88 (191)
.|+.++..++++ .|.|==.+.|....|+. .+|-..+..++||-+-..-.+. ...+.... .+.++...| +
T Consensus 148 eGi~Aa~~L~~e--GI~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 224 (333)
T PTZ00411 148 EGIQAAKALEKE--GIHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY-K 224 (333)
T ss_pred HHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHH-H
Confidence 456666666654 23333333344443333 3577788999999866532211 11122222 455677788 7
Q ss_pred hcCCC----------ccchhhccCCcc
Q 029599 89 QMGLS----------DKDIVALSGGHT 105 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaHt 105 (191)
..|+. .+|+..|.|+|.
T Consensus 225 ~~g~~T~Im~ASfRn~~qi~~laG~D~ 251 (333)
T PTZ00411 225 KHGYKTIVMGASFRNTGEILELAGCDK 251 (333)
T ss_pred HcCCCeEEEecccCCHHHHHHHHCCCE
Confidence 77764 577788889984
No 21
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=38.86 E-value=31 Score=30.20 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCCC--CCCC----CCCChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPD----AKQGNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~~--~lP~----p~~~~~~~~~~F~~ 88 (191)
.|+..+..++++ .|+|-=.+.|....|+. .+|-..+..++||-|-..-...+ ..+. .-..+.++...| +
T Consensus 136 eGi~A~~~L~~~--GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~-~ 212 (313)
T cd00957 136 EGIQAAKQLEKE--GIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY-K 212 (313)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHH-H
Confidence 356666666664 34444444454444443 35777889999998765321111 1111 113456677888 7
Q ss_pred hcCCC----------ccchhhccCCc
Q 029599 89 QMGLS----------DKDIVALSGGH 104 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaH 104 (191)
..|+. ..|+..|.|+|
T Consensus 213 ~~~~~T~vmaASfRn~~~v~~laG~d 238 (313)
T cd00957 213 KFGYKTKVMGASFRNIGQILALAGCD 238 (313)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCC
Confidence 88865 45566666666
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=36.47 E-value=35 Score=30.82 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCCC--CCCCCC----CChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEG--RLPDAK----QGNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~~--~lP~p~----~~~~~~~~~F~~ 88 (191)
.|+..+..++++ .|.|-=.+.|....|+. .+|-..+..++||.|-..-...+ .+|... ..+.++...| +
T Consensus 142 eGi~A~~~L~~~--GI~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~-~ 218 (391)
T PRK12309 142 EGIKAAEVLEKE--GIHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY-K 218 (391)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHH-H
Confidence 456666666654 34444444444444443 36778899999998774432111 133222 2456677788 7
Q ss_pred hcCCC----------ccchhhccCCcc
Q 029599 89 QMGLS----------DKDIVALSGGHT 105 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaHt 105 (191)
..|+. ..|+..|.|+|.
T Consensus 219 ~~~~~T~Im~ASfRn~~~v~~laG~d~ 245 (391)
T PRK12309 219 KFGYKTEVMGASFRNIGEIIELAGCDL 245 (391)
T ss_pred hcCCCcEEEecccCCHHHHHHHHCCCe
Confidence 77753 567777888884
No 23
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=34.56 E-value=17 Score=21.38 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=11.9
Q ss_pred HhcCCCccchh-hccC
Q 029599 88 AQMGLSDKDIV-ALSG 102 (191)
Q Consensus 88 ~~~Gl~~~e~V-aL~G 102 (191)
...||+++|.| ||+|
T Consensus 19 e~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 19 EALGLTPEDAVEALIG 34 (35)
T ss_pred hhcCCCHHHHHHHHhc
Confidence 56789999998 6665
No 24
>PHA03388 ORF1_granulin Granulin; Provisional
Probab=29.51 E-value=24 Score=29.17 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=13.0
Q ss_pred CCCCccChHHHHHHh
Q 029599 122 RNPLIFDNSYFTELL 136 (191)
Q Consensus 122 ~tp~~fDn~Yy~~l~ 136 (191)
++..++||+|||+|=
T Consensus 14 g~tyvyDNkyyknLG 28 (248)
T PHA03388 14 GTTCVIDNKHLKSLG 28 (248)
T ss_pred CceEEEccHHHHHHH
Confidence 467899999999985
No 25
>PRK05269 transaldolase B; Provisional
Probab=29.45 E-value=30 Score=30.38 Aligned_cols=87 Identities=15% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHH--HhcCCCCCCCCCCCCCCCCCCC---CCCCCC---CCCChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQ---EGRLPD---AKQGNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av--~~~ggP~~~v~~GR~D~~~~~~---~~~lP~---p~~~~~~~~~~F~~ 88 (191)
.|+..+..++++ .|+|==.+.|....|+ ..+|-..+..++||-|-..-.. ...-+. .-..+.++...| +
T Consensus 138 eGi~A~~~L~~~--GI~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~-k 214 (318)
T PRK05269 138 EGIRAAEQLEKE--GINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY-K 214 (318)
T ss_pred HHHHHHHHHHHc--CCceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH-H
Confidence 456666666654 2333333334333333 3357778899999988542211 011111 223466777888 7
Q ss_pred hcCCC----------ccchhhccCCccc
Q 029599 89 QMGLS----------DKDIVALSGGHTL 106 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaHti 106 (191)
..|+. ..++..|.|+|++
T Consensus 215 ~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 215 KHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred HcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 87764 4566667777743
No 26
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=28.30 E-value=1.7e+02 Score=19.49 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhC----C-CCChHHHHHHhHHHHHHhcC
Q 029599 15 LDIAVRLLEPFKEQF----P-TISYADLYQLAGVVGVEVTG 50 (191)
Q Consensus 15 l~~~~~~i~~ik~~~----~-~VS~ADiialAa~~Av~~~g 50 (191)
+.+.++.+++.-... + .+|.||+..+....-+...+
T Consensus 33 ~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~ 73 (95)
T PF00043_consen 33 VPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLG 73 (95)
T ss_dssp HHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhC
Confidence 334556666544432 2 79999999998877666544
No 27
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=27.54 E-value=97 Score=27.19 Aligned_cols=48 Identities=27% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCCCCCChHHHHHHHHH-hcCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhh
Q 029599 71 RLPDAKQGNDHLRQVFGA-QMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLT 137 (191)
Q Consensus 71 ~lP~p~~~~~~~~~~F~~-~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~ 137 (191)
+.|.|.-+.+++.++-.. .+-+...|+|+|+|. -|..+-+.||.+|++
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGS-------------------lP~g~~~d~y~~li~ 153 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESDDIVVLSGS-------------------LPPGVPPDAYAELIR 153 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCC-------------------CCCCCCHHHHHHHHH
Confidence 568888776655443322 233788999999973 477788889988875
No 28
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=25.98 E-value=59 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCccchhhccCCcccccccc
Q 029599 80 DHLRQVFGAQMGLSDKDIVALSGGHTLGRCHK 111 (191)
Q Consensus 80 ~~~~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~ 111 (191)
.++...| +++|+++.+.+.++..|.--+.|.
T Consensus 108 ~~la~wF-~~~Gi~IHd~ti~Ip~~vH~rIH~ 138 (188)
T PF09533_consen 108 EELAEWF-ERRGIDIHDYTIPIPRDVHRRIHG 138 (188)
T ss_pred HHHHHHH-HHcCCChhheeEecCHHHHHHhhC
Confidence 5689999 999999999999988776444444
No 29
>PF09027 GTPase_binding: GTPase binding; InterPro: IPR015116 The GTPase binding domain binds to the G protein Cdc42, inhibiting both its intrinsic and stimulated GTPase activity. The domain is largely unstructured in the absence of Cdc42 []. ; PDB: 1CF4_B.
Probab=25.73 E-value=24 Score=23.86 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=4.6
Q ss_pred CCCCccChHHHH
Q 029599 122 RNPLIFDNSYFT 133 (191)
Q Consensus 122 ~tp~~fDn~Yy~ 133 (191)
++|..|||.|+.
T Consensus 31 g~~~~idn~yl~ 42 (66)
T PF09027_consen 31 GSPSEIDNNYLN 42 (66)
T ss_dssp -SS----TTT--
T ss_pred CChhhhhhhhhc
Confidence 589999999997
No 30
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=25.50 E-value=82 Score=26.63 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCC
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLS 93 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~~~~~F~~~~Gl~ 93 (191)
.|+.+++.++++- ++|==.+.|....|+. .+|--.+.++.||-|-..-++. ..+.+++..| ..++..
T Consensus 103 eGl~Ai~~L~~eG--I~~NvTLiFS~~QAl~aa~aga~~iSpFvgRi~D~~~d~~-------~~I~~~~~iy-~~y~~~ 171 (239)
T COG0176 103 EGLKAIKALEAEG--IKTNVTLIFSAAQALLAAEAGATYISPFVGRIDDWGIDGM-------LGIAEAREIY-DYYKQH 171 (239)
T ss_pred HHHHHHHHHHHCC--CeeeEEEEecHHHHHHHHHhCCeEEEeecchHHhhccCch-------HHHHHHHHHH-HHhccc
Confidence 4677777777763 2222222333333433 2344456899999554443332 2677888888 666665
No 31
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=25.49 E-value=48 Score=29.12 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHH--HhcCCCCCCCCCCCCCCCCCCCCC--CC-CC---CCCChHHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGV--EVTGGPDIPFHPGRDDKAEPPQEG--RL-PD---AKQGNDHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av--~~~ggP~~~v~~GR~D~~~~~~~~--~l-P~---p~~~~~~~~~~F~~ 88 (191)
.|+..+..++++ .|+|-=.+.|....|+ ..+|-..+..++||-+-..-...+ .. +. +-..+.++...| +
T Consensus 136 eGi~A~~~L~~~--GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~-k 212 (317)
T TIGR00874 136 EGIRAAEELEKE--GIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY-K 212 (317)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHH-H
Confidence 456666666664 2333222333333333 346778899999998764221111 11 11 123556677888 7
Q ss_pred hcCCC----------ccchhhccCCcc
Q 029599 89 QMGLS----------DKDIVALSGGHT 105 (191)
Q Consensus 89 ~~Gl~----------~~e~VaL~GaHt 105 (191)
..|+. .+|+.+|.|+|.
T Consensus 213 ~~g~~T~Im~ASfRn~~qv~~laG~d~ 239 (317)
T TIGR00874 213 KHGYPTEVMGASFRNKEEILALAGCDR 239 (317)
T ss_pred HcCCCcEEEeeccCCHHHHHHHHCCCe
Confidence 87764 567777788883
No 32
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=24.82 E-value=66 Score=26.68 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCCc
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSD 94 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~~~~~F~~~~Gl~~ 94 (191)
.|+.++..++++- |.+-=...+....|+- .+|.-.+..++||.|...- .+..-+.++...+ +..|+..
T Consensus 91 ~Gl~Ai~~L~~~G--I~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~-------dg~~~i~~~~~~~-~~~~~~t 160 (220)
T PRK12655 91 EGLAAIKKLKKEG--IPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGG-------DGIRMVQELQTLL-EMHAPES 160 (220)
T ss_pred HHHHHHHHHHHCC--CceeEeEecCHHHHHHHHHcCCeEEEeecchHhHcCC-------CHHHHHHHHHHHH-HhcCCCc
Confidence 5677888887762 2211112233333321 2566678999999985321 1233456778888 7778877
Q ss_pred cchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhhccCCCccccccc--ccccCCCChHHHHHHhhhC
Q 029599 95 KDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLTGEKDGLLQLPSD--KALLDDPVFRPLVEKYAAD 168 (191)
Q Consensus 95 ~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~~~~~gl~~l~sD--~~L~~d~~t~~~v~~~A~d 168 (191)
+=|+|-. . +| .+++..++.| -...+++-| ..|+.+|-|..-++.|..|
T Consensus 161 kILaAS~---------------r-----~~----~~v~~~~~~G--~d~vTip~~vl~~l~~~p~t~~~~~~F~~d 210 (220)
T PRK12655 161 MVLAASF---------------K-----TP----RQALDCLLAG--CQSITLPLDVAQQMLNTPAVESAIEKFEQD 210 (220)
T ss_pred EEEEEec---------------C-----CH----HHHHHHHHcC--CCEEECCHHHHHHHHcCCChHHHHHHHHHH
Confidence 6444311 0 11 2333333444 333333433 4567778888888877543
No 33
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=24.14 E-value=33 Score=28.98 Aligned_cols=76 Identities=13% Similarity=-0.026 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCh---HHHHHHHHH
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPP---QEGRLPDAKQGN---DHLRQVFGA 88 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~---~~~~lP~p~~~~---~~~~~~F~~ 88 (191)
.|+.++..++++ .|+|-=.+.|....|+. .+|...+.+++||-|...-. ..+.=|.....+ .++.+.| +
T Consensus 127 ~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~-~ 203 (252)
T cd00439 127 EGIPAIKDLIAA--GISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLY-K 203 (252)
T ss_pred HHHHHHHHHHHC--CCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHH-H
Confidence 467777777765 24443334454444443 35777889999999876642 111112222333 3556666 6
Q ss_pred hcCCCcc
Q 029599 89 QMGLSDK 95 (191)
Q Consensus 89 ~~Gl~~~ 95 (191)
..|...+
T Consensus 204 ~~~~~tk 210 (252)
T cd00439 204 QKFKKQR 210 (252)
T ss_pred HhCCCCe
Confidence 6666544
No 34
>PRK05264 transcriptional repressor protein MetJ; Provisional
Probab=23.78 E-value=51 Score=23.80 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.8
Q ss_pred ccccCCCChHHHHHHh--hhCHHHHHHHHHHHHH
Q 029599 150 KALLDDPVFRPLVEKY--AADEDAFFADYAEAHL 181 (191)
Q Consensus 150 ~~L~~d~~t~~~v~~~--A~d~~~f~~~F~~am~ 181 (191)
..+++|.+||..|..+ |+|.++.-+.|-.||.
T Consensus 34 LkiLTdERTRRQvnNLRHATNSELLCEAFLHA~T 67 (105)
T PRK05264 34 LKILTDERTRRQVNNLRHATNSELLCEAFLHAFT 67 (105)
T ss_pred HHHHhhHHHHHHHhhhhhcccHHHHHHHHHHHHc
Confidence 4568899999998754 6788888888877764
No 35
>PHA03389 polh polyhedrin; Provisional
Probab=23.75 E-value=35 Score=28.32 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=13.1
Q ss_pred CCCCccChHHHHHHh
Q 029599 122 RNPLIFDNSYFTELL 136 (191)
Q Consensus 122 ~tp~~fDn~Yy~~l~ 136 (191)
++..++||+|||+|=
T Consensus 12 g~tyv~DNkyyk~LG 26 (246)
T PHA03389 12 GRTYVYDNKYYKNLG 26 (246)
T ss_pred CceEEEccHHHhhHH
Confidence 567899999999985
No 36
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=23.64 E-value=59 Score=24.55 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCC--ccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhh
Q 029599 79 NDHLRQVFGAQMGLS--DKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLT 137 (191)
Q Consensus 79 ~~~~~~~F~~~~Gl~--~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~ 137 (191)
+.+-+..+ +++++ ..+.++|+|.|- .++..+.-..+.....|..-+++||++=+.
T Consensus 14 i~~pl~~I--ar~~s~~~~~I~IlSGtHG--~~~G~nw~~~~~~~R~p~l~e~~f~~eD~~ 70 (119)
T PF15656_consen 14 INAPLETI--ARRPSGDNGDIHILSGTHG--YCSGQNWLSESNRLRRPGLKEKAFYKEDLR 70 (119)
T ss_pred hHHHHHHH--HhCcCCCCCCEEEEeCCCC--CccccchhhccccccCchhhhhhHHHHHHH
Confidence 33444555 45565 899999999883 111111000011124688899999987664
No 37
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=22.71 E-value=61 Score=27.66 Aligned_cols=30 Identities=30% Similarity=0.646 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHhC---------------CCCChHHHHHHhHH
Q 029599 14 GLDIAVRLLEPFKEQF---------------PTISYADLYQLAGV 43 (191)
Q Consensus 14 gl~~~~~~i~~ik~~~---------------~~VS~ADiialAa~ 43 (191)
||+.++++++++|.++ |+-..+|||++.|-
T Consensus 72 GLeeglki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQiPAF 116 (279)
T COG2877 72 GLEEGLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQIPAF 116 (279)
T ss_pred CHHHHHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhcchHH
Confidence 6889999999999985 22345888888765
No 38
>cd00490 Met_repressor_MetJ Met Repressor, MetJ. MetJ is a bacterial regulatory protein that uses S-adenosylmethionine (SAM) as a corepressor to regulate the production of Methionine. MetJ binds arrays of two to five adjacent copies of an eight base-pair 'metbox' sequence. MetJ forms sufficiently strong interactions with the sugar-phosphate backbone to accomodate sequence variation in natural operators. However, it is very sensitive to particular base changes in the operator. MetJ exists as a homodimer.
Probab=22.51 E-value=56 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.5
Q ss_pred ccccCCCChHHHHHHh--hhCHHHHHHHHHHHHH
Q 029599 150 KALLDDPVFRPLVEKY--AADEDAFFADYAEAHL 181 (191)
Q Consensus 150 ~~L~~d~~t~~~v~~~--A~d~~~f~~~F~~am~ 181 (191)
..+++|.+||..|..+ |+|.++.-+.|-.||.
T Consensus 33 LkiLTdERTRRQvnnlRHATNSELLCEAFLHAfT 66 (103)
T cd00490 33 LKILTDERTRRQVNNLRHATNSELLCEAFLHAFT 66 (103)
T ss_pred HHHHhhHHHHHHHhhhhhcccHHHHHHHHHHHhc
Confidence 3457899999998754 6788888888877764
No 39
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=21.51 E-value=24 Score=34.17 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=39.2
Q ss_pred CCCCCCCCChHHH-HHHHHHhcCCCccchhhccCCccccccccCCCCCCCCCCCCCCccChHHHHHHhh
Q 029599 70 GRLPDAKQGNDHL-RQVFGAQMGLSDKDIVALSGGHTLGRCHKERSGFEGPWTRNPLIFDNSYFTELLT 137 (191)
Q Consensus 70 ~~lP~p~~~~~~~-~~~F~~~~Gl~~~e~VaL~GaHtiG~~~~~~~~~~~~~~~tp~~fDn~Yy~~l~~ 137 (191)
..+|+|.....+. .+.. .+.-++.++||++.|.--+ |||-+.-++|+-.||.++-.
T Consensus 693 ~alpsp~~~~~q~~~~p~-~~l~~d~e~~vVivG~aEv-----------gpwGSsRTRfemE~~gelSa 749 (866)
T COG4982 693 AALPSPPRPFTQTPPQPR-ANLKVDFEDVVVIVGFAEV-----------GPWGSSRTRFEMEVEGELSA 749 (866)
T ss_pred ccCCCCCCCccCCCCCch-hhcccCHHHceEEecceec-----------cCccCccchhhhhhccccch
Confidence 4577777655432 2333 6667888999999986543 47777888999999876643
No 40
>PRK01362 putative translaldolase; Provisional
Probab=20.47 E-value=55 Score=26.98 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHhHHHHHH--hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHhcCCCc
Q 029599 17 IAVRLLEPFKEQFPTISYADLYQLAGVVGVE--VTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSD 94 (191)
Q Consensus 17 ~~~~~i~~ik~~~~~VS~ADiialAa~~Av~--~~ggP~~~v~~GR~D~~~~~~~~~lP~p~~~~~~~~~~F~~~~Gl~~ 94 (191)
.|+.++..++++- |++--...+....|+. .+|--.+..++||-|-..- .+..-+.++...+ +..|++.
T Consensus 89 ~G~~a~~~L~~~G--i~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-------dg~~~i~~~~~~~-~~~~~~t 158 (214)
T PRK01362 89 EGLKAVKALSKEG--IKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGT-------DGMELIEDIREIY-DNYGFDT 158 (214)
T ss_pred HHHHHHHHHHHCC--CceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCC-------CHHHHHHHHHHHH-HHcCCCc
Confidence 4677788877752 2322222343443332 2455567899999976422 1233456778888 7888766
Q ss_pred cchh
Q 029599 95 KDIV 98 (191)
Q Consensus 95 ~e~V 98 (191)
+=|+
T Consensus 159 kila 162 (214)
T PRK01362 159 EIIA 162 (214)
T ss_pred EEEE
Confidence 5443
Done!