Query 029600
Match_columns 191
No_of_seqs 113 out of 1085
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 15:31:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03167 Chaperonin-60 beta su 100.0 6.1E-41 1.3E-45 317.3 15.9 174 3-190 106-283 (600)
2 CHL00093 groEL chaperonin GroE 100.0 3.4E-40 7.5E-45 308.1 15.3 175 3-190 50-228 (529)
3 PTZ00114 Heat shock protein 60 100.0 7.3E-40 1.6E-44 307.4 16.5 174 3-189 62-239 (555)
4 PRK12852 groEL chaperonin GroE 100.0 2.3E-39 5E-44 303.4 16.4 175 3-190 51-229 (545)
5 PRK14104 chaperonin GroEL; Pro 100.0 4.1E-39 8.9E-44 302.0 15.4 175 3-190 51-229 (546)
6 PRK12849 groEL chaperonin GroE 100.0 7.1E-39 1.5E-43 300.2 16.8 175 3-190 50-228 (542)
7 TIGR02348 GroEL chaperonin Gro 100.0 8.6E-39 1.9E-43 298.4 16.2 175 3-190 49-227 (524)
8 PRK00013 groEL chaperonin GroE 100.0 1.8E-38 3.9E-43 297.5 16.7 175 3-190 50-228 (542)
9 cd03344 GroEL GroEL_like type 100.0 2.5E-38 5.5E-43 295.1 16.9 175 3-190 48-226 (520)
10 PRK12851 groEL chaperonin GroE 100.0 2.1E-38 4.5E-43 297.0 15.9 174 3-189 51-228 (541)
11 PRK12850 groEL chaperonin GroE 100.0 2.6E-38 5.7E-43 296.4 16.1 174 3-189 51-228 (544)
12 COG0459 GroL Chaperonin GroEL 100.0 1.2E-37 2.7E-42 290.9 11.2 171 3-190 51-230 (524)
13 KOG0356 Mitochondrial chaperon 100.0 3.7E-37 7.9E-42 283.7 8.2 175 3-190 64-242 (550)
14 TIGR02345 chap_CCT_eta T-compl 100.0 2.2E-35 4.8E-40 274.9 12.8 170 3-190 57-243 (522)
15 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.4E-34 3E-39 267.6 14.4 167 3-190 52-235 (484)
16 TIGR02347 chap_CCT_zeta T-comp 100.0 5.4E-34 1.2E-38 266.5 13.9 167 3-190 56-239 (531)
17 cd03343 cpn60 cpn60 chaperonin 100.0 5.3E-34 1.2E-38 264.7 13.3 167 3-190 55-240 (517)
18 cd03338 TCP1_delta TCP-1 (CTT 100.0 8E-34 1.7E-38 263.6 13.5 168 3-190 48-233 (515)
19 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.6E-34 1.4E-38 264.7 12.9 170 3-190 56-242 (522)
20 TIGR02340 chap_CCT_alpha T-com 100.0 2.9E-33 6.2E-38 261.5 13.5 168 3-190 52-239 (536)
21 TIGR02339 thermosome_arch ther 100.0 4.1E-33 8.9E-38 259.3 14.2 168 3-190 56-243 (519)
22 cd00309 chaperonin_type_I_II c 100.0 7.1E-33 1.5E-37 253.8 14.5 167 3-189 48-229 (464)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 7.4E-33 1.6E-37 255.7 12.5 167 3-189 56-242 (480)
24 cd03335 TCP1_alpha TCP-1 (CTT 100.0 2E-32 4.3E-37 255.2 12.8 168 3-190 48-235 (527)
25 TIGR02344 chap_CCT_gamma T-com 100.0 4E-32 8.7E-37 252.9 12.7 167 3-190 56-243 (525)
26 TIGR02342 chap_CCT_delta T-com 100.0 9.5E-32 2E-36 250.3 13.0 169 3-190 49-234 (517)
27 PTZ00212 T-complex protein 1 s 100.0 3.7E-32 8E-37 254.0 8.2 167 3-190 67-248 (533)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 4.6E-31 9.9E-36 245.7 14.3 167 3-190 55-236 (517)
29 cd03339 TCP1_epsilon TCP-1 (CT 100.0 9.7E-32 2.1E-36 250.6 9.6 168 3-190 63-248 (526)
30 TIGR02343 chap_CCT_epsi T-comp 100.0 2.1E-31 4.6E-36 249.0 11.6 168 3-190 67-252 (532)
31 TIGR02341 chap_CCT_beta T-comp 100.0 1.2E-31 2.6E-36 249.9 9.7 167 3-190 56-237 (519)
32 TIGR02346 chap_CCT_theta T-com 100.0 4E-31 8.7E-36 247.1 10.1 165 3-190 58-240 (531)
33 KOG0361 Chaperonin complex com 100.0 8.1E-31 1.8E-35 235.1 10.3 171 3-190 60-246 (543)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 1.5E-29 3.2E-34 233.3 12.9 165 3-189 48-229 (472)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 2.2E-28 4.8E-33 222.7 12.9 166 3-190 29-207 (485)
36 KOG0363 Chaperonin complex com 99.9 2.6E-26 5.5E-31 205.2 12.5 166 3-190 60-241 (527)
37 KOG0364 Chaperonin complex com 99.9 4.2E-25 9.2E-30 200.2 9.2 169 1-189 57-242 (527)
38 KOG0358 Chaperonin complex com 99.9 6.3E-25 1.4E-29 197.0 9.2 167 3-189 66-249 (534)
39 KOG0360 Chaperonin complex com 99.9 4.5E-22 9.7E-27 181.8 10.2 167 3-189 59-245 (545)
40 KOG0359 Chaperonin complex com 99.9 5.3E-22 1.1E-26 180.0 6.5 169 3-191 57-237 (520)
41 KOG0362 Chaperonin complex com 99.9 3.7E-21 8.1E-26 176.4 11.7 164 3-189 66-242 (537)
42 cd03333 chaperonin_like chaper 99.0 1.2E-09 2.6E-14 90.4 7.2 80 102-189 2-93 (209)
43 KOG0357 Chaperonin complex com 98.8 2.2E-09 4.7E-14 95.9 4.2 87 15-113 71-157 (400)
44 cd03334 Fab1_TCP TCP-1 like do 97.8 4.1E-05 9E-10 66.2 5.4 68 115-190 20-98 (261)
45 PTZ00212 T-complex protein 1 s 54.0 28 0.00061 33.0 5.5 48 122-170 177-225 (533)
46 TIGR02341 chap_CCT_beta T-comp 46.5 42 0.0009 31.8 5.4 47 122-170 166-214 (519)
47 KOG0230 Phosphatidylinositol-4 46.2 35 0.00075 36.9 5.1 65 117-189 336-411 (1598)
48 PF08708 PriCT_1: Primase C te 34.2 1.5E+02 0.0032 20.0 5.8 54 55-113 14-67 (71)
49 PF00725 3HCDH: 3-hydroxyacyl- 31.3 89 0.0019 22.1 4.0 28 53-82 7-35 (97)
50 COG4821 Uncharacterized protei 28.5 24 0.00053 30.4 0.6 40 37-78 179-219 (243)
51 PF07131 DUF1382: Protein of u 24.9 2.4E+02 0.0052 19.5 4.9 53 70-125 3-55 (61)
52 PF06577 DUF1134: Protein of u 24.5 1.9E+02 0.0041 23.7 5.1 60 115-182 20-79 (160)
53 PRK11623 pcnB poly(A) polymera 23.5 1E+02 0.0022 29.5 3.8 70 19-97 299-370 (472)
54 PF05589 DUF768: Protein of un 21.0 2E+02 0.0043 20.0 4.0 47 27-83 10-56 (64)
55 KOG3083 Prohibitin [Posttransl 20.5 1.2E+02 0.0025 26.6 3.3 37 100-138 202-238 (271)
No 1
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=6.1e-41 Score=317.31 Aligned_cols=174 Identities=25% Similarity=0.420 Sum_probs=167.5
Q ss_pred chhhhhhhhccCCCcc----cchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNNR----IKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~----akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||+|+|+++||+ |+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++
T Consensus 106 nDG~TIlk~i~~~hP~~~~gakll-~~~a~~qd~evGDG---------TTTvvVLa~~LL~ea~~li--~~Gi~P~~I~~ 173 (600)
T PLN03167 106 NDGVTVAKEVELEDPVENIGAKLV-RQAAAKTNDLAGDG---------TTTSVVLAQGLIAEGVKVV--AAGANPVQITR 173 (600)
T ss_pred ccHHHHHHHcccCCchhhHHHHHH-HHHHHhhhhhhCCC---------ccHHHHHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 6999999999999995 9999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++ ++|.+||++|+++++.||+|+++|+..+|. +|.|.+++|++.++++++++|++||+
T Consensus 174 G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~-~g~i~v~~g~s~~dsl~~v~G~~~d~ 251 (600)
T PLN03167 174 GIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGR-KGVVTLEEGKSAENNLYVVEGMQFDR 251 (600)
T ss_pred HHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhcc-CCcEEeccCCCccceeEEEEEEEecC
Confidence 9999999999999999999975 679999999999999999999999999998 89999999999988889999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.||||++++++|+++++||+||++|++|+.
T Consensus 252 g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~ 283 (600)
T PLN03167 252 GYISPYFVTDSEKMSVEYDNCKLLLVDKKITN 283 (600)
T ss_pred CccCcccccCcCCCeEEEeCCEEEEEccccCC
Confidence 99999999999999999999999999998864
No 2
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=3.4e-40 Score=308.06 Aligned_cols=175 Identities=26% Similarity=0.455 Sum_probs=167.6
Q ss_pred chhhhhhhhccCCCcccc----hhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIK----VVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~ak----ll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+|||++|+++||+++ ++ +++|++|++++||| |||++|||++||++|.+++ ++|+||..|++
T Consensus 50 nDG~tIlk~i~~~hp~a~~g~~li-~~~a~~~~~e~GDG---------TTtvvvLa~eLL~~a~~li--~~Gi~P~~I~~ 117 (529)
T CHL00093 50 NDGVTIAKEIELEDHIENTGVALI-RQAASKTNDVAGDG---------TTTATVLAYAIVKQGMKNV--AAGANPISLKR 117 (529)
T ss_pred ccHHHHHHHccCcCHHHHHHHHHH-HHHHHhcCceecCC---------CCHHHHHHHHHHHHHHHHH--HCCCCHHHHHH
Confidence 699999999999999984 88 88999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.++|.+||++|+++++.+|+++++|+..+|. +|.|++++|+...+++++++|++|++
T Consensus 118 G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~-~g~i~~~~g~~~~~~~~~v~G~~~~~ 196 (529)
T CHL00093 118 GIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGR-EGVISLEEGKSTVTELEITEGMRFEK 196 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcc-CCceeecCCCccceeeEEEeeEEecC
Confidence 99999999999999999999988999999999999999999999999999998 89899888877777899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.||||++++++|+++++||+||++|++|+.
T Consensus 197 g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~ 228 (529)
T CHL00093 197 GFISPYFVTDTERMEVVQENPYILLTDKKITL 228 (529)
T ss_pred ccCcCccccCCccceEEecCceehhhcCCCCc
Confidence 99999999999999999999999999999974
No 3
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=7.3e-40 Score=307.44 Aligned_cols=174 Identities=30% Similarity=0.503 Sum_probs=168.5
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||+++|+++|| +|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++
T Consensus 62 nDG~TIlk~i~~~~p~~~~~a~ll-~~~a~~qd~evGDG---------TTtvvvLa~~LL~~a~~li--~~GihP~~I~~ 129 (555)
T PTZ00114 62 KDGVTVAKAIEFSDRFENVGAQLI-RQVASKTNDKAGDG---------TTTATILARAIFREGCKAV--AAGLNPMDLKR 129 (555)
T ss_pred eChHHHHHhcCcCCcchhHHHHHH-HHHHHhhccccCCc---------ccHHHHHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 699999999999999 89999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.++|+||+++++.+++++++|+..++. +|.|.+++|++.++++++++|++|++
T Consensus 130 G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~-~g~I~~~~g~~~~ds~~~v~G~~~~~ 208 (555)
T PTZ00114 130 GIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGK-DGTITVEDGKTLEDELEVVEGMSFDR 208 (555)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCcEEEcCCCCccceEEEEEEEEEec
Confidence 99999999999999999999888899999999999899999999999999998 88899899999888779999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
||.||||++++++|+++++||+||++|++|+
T Consensus 209 g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~ 239 (555)
T PTZ00114 209 GYISPYFVTNEKTQKVELENPLILVTDKKIS 239 (555)
T ss_pred cccccccccccccCeEEecCCEEEEEcCCCC
Confidence 9999999999999999999999999999986
No 4
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.3e-39 Score=303.40 Aligned_cols=175 Identities=31% Similarity=0.513 Sum_probs=167.8
Q ss_pred chhhhhhhhccCC----CcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLP----NNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~----hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+|||++|+++ ||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++
T Consensus 51 nDG~TIlk~i~~~~~~~~p~akll-~e~a~~q~~e~GDG---------TTtvvvLa~eLL~~a~~li--~~Gi~P~~I~~ 118 (545)
T PRK12852 51 KDGVTVAKEIELEDKFENMGAQMV-REVASKTNDLAGDG---------TTTATVLAQAIVREGAKAV--AAGMNPMDLKR 118 (545)
T ss_pred ccHHHHHHHccCCCcccChHHHHH-HHHHhhcCceecCC---------cchHHHHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 6999999999995 9999999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.+||++|+++++.+|+++++|+..++. +|.|+++.|+...+++++++|++|++
T Consensus 119 G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~-~g~i~v~~g~~~~~~~~~v~G~~~~~ 197 (545)
T PRK12852 119 GIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGN-EGVITVEENKSLETEVDIVEGMKFDR 197 (545)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhcc-CCceeeecCCCcceEEEEEEeEEecC
Confidence 99999999999999999999887889999999999899999999999999998 89999999888777899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.||||++++++|+++++||+||++|.+|+.
T Consensus 198 g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~ 229 (545)
T PRK12852 198 GYLSPYFVTNAEKMTVELDDAYILLHEKKLSG 229 (545)
T ss_pred CccCCccccccccceEEecCceEEEecCccCC
Confidence 99999999999999999999999999998763
No 5
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=4.1e-39 Score=302.02 Aligned_cols=175 Identities=31% Similarity=0.515 Sum_probs=168.2
Q ss_pred chhhhhhhhccCC----CcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLP----NNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~----hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||+++|+++ ||+|+++ +++|++||+++||| |||+||||++||+++.+++ ++|+||..|++
T Consensus 51 nDG~tIlk~i~~~d~~~~pgakll-~e~a~~qd~e~GDG---------TTTvvvLa~~LL~~a~~li--~~Gi~P~~I~~ 118 (546)
T PRK14104 51 KDGVTVAKEIELEDKFENMGAQMV-REVASKSADAAGDG---------TTTATVLAQAIVREGAKSV--AAGMNPMDLKR 118 (546)
T ss_pred ccHHHHHHHhcCCCcccChHHHHH-HHHHHhhcccccCc---------ccHHHHHHHHHHHHHHHHH--HCCCCccHHHH
Confidence 6999999999999 9999999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.+||++|+++|+.+|+++++|+..+|. +|.|.++.++..++++++++|++|++
T Consensus 119 G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~-~g~i~v~~~~~~~~~~~~~~G~~~~~ 197 (546)
T PRK14104 119 GIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGN-EGVITVEEAKSLETELDVVEGMQFDR 197 (546)
T ss_pred HHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhcc-CCceeeEecccccceEEEEEEEEEeC
Confidence 99999999999999999999877889999999999999999999999999998 89999998887777899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.||||++++++++.++++|+||++|.+++.
T Consensus 198 g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~i~~ 229 (546)
T PRK14104 198 GYISPYFVTNADKMRVEMDDAYILINEKKLSS 229 (546)
T ss_pred CCCCcchhcCcccCceeeeCcEEEEehhhhcC
Confidence 99999999999999999999999999988753
No 6
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=7.1e-39 Score=300.17 Aligned_cols=175 Identities=34% Similarity=0.502 Sum_probs=168.8
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||+++|+++|| +|+++ +++|++||+++||| |||+++||++||+++.+++ ++|+||..|++
T Consensus 50 nDGaTIlk~i~~~hp~~~~~a~ll-~~~a~~qd~e~GDG---------TTtvviLageLL~~a~~li--~~GihP~~I~~ 117 (542)
T PRK12849 50 KDGVSIAKEIELEDPFENLGAQLV-KEVASKTNDVAGDG---------TTTATVLAQALVQEGLKNV--AAGANPMDLKR 117 (542)
T ss_pred ccHHHHHHHcccCCccHhHHHHHH-HHHHHhcCCccCCC---------ccHHHHHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 699999999999999 89999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.++|+||+++++.+++++++|+..++. +|.+.++.|++.+|++++++|++|++
T Consensus 118 G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~-~g~i~i~~g~~~~d~~~~v~G~~~~~ 196 (542)
T PRK12849 118 GIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGK-DGVITVEESKTLETELEVTEGMQFDR 196 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc-CCcEeEEeCCCcceeEEEEEeEEEec
Confidence 99999999999999999999988899999999999999999999999999998 88899999998888899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.+|+|+++.++|+++++||+||++|++|+.
T Consensus 197 g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 228 (542)
T PRK12849 197 GYLSPYFVTDPERMEAVLEDPLILLTDKKISS 228 (542)
T ss_pred CcccCcccccccCceEEeeCcEEEeecCCcCC
Confidence 99999999999999999999999999998764
No 7
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=8.6e-39 Score=298.36 Aligned_cols=175 Identities=31% Similarity=0.487 Sum_probs=168.7
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||+++|+++|| +||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++
T Consensus 49 nDG~tIlk~i~~~hp~~~~~akll-~~~a~~qd~e~GDG---------TTtvviLa~~Ll~~a~~li--~~GihP~~Ii~ 116 (524)
T TIGR02348 49 KDGVTVAKEIELEDKFENMGAQLV-KEVASKTNDVAGDG---------TTTATVLAQAIVKEGLKNV--AAGANPIELKR 116 (524)
T ss_pred ccHHHHHHHccCCChhhHHHHHHH-HHHHHccCceeCCC---------cchHHHHHHHHHHHHHHHh--hCCCCHHHHHH
Confidence 699999999999999 89999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.++|.+|+++++.+++++++|+..++. +|.|.++.|+..++++++++|++|++
T Consensus 117 G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~-~~~i~v~~g~~~~~~s~~v~G~~~~~ 195 (524)
T TIGR02348 117 GIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGK-DGVITVEESKSLETELEVVEGMQFDR 195 (524)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCc-CCcEeeecCCCccccEEEEEeEEEcC
Confidence 99999999999999999999988899999999999999999999999999998 88899988888878899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.+|+|++++++++++++||+||++|++|+.
T Consensus 196 g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~ 227 (524)
T TIGR02348 196 GYISPYFVTDAEKMEVELENPYILITDKKISN 227 (524)
T ss_pred CCCCcccccCccCCeEEeeCceeeeccCCcCC
Confidence 99999999999999999999999999998753
No 8
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-38 Score=297.49 Aligned_cols=175 Identities=32% Similarity=0.493 Sum_probs=167.5
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+||||+|+++|| +|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++
T Consensus 50 nDG~tIlk~i~~~hp~~~~~akll-~e~a~~qd~e~GDG---------TTtvviLa~~LL~~a~~li--~~Gi~P~~I~~ 117 (542)
T PRK00013 50 KDGVTVAKEIELEDPFENMGAQLV-KEVASKTNDVAGDG---------TTTATVLAQAIVREGLKNV--AAGANPMDLKR 117 (542)
T ss_pred ccHHHHHHHccCCCchhhHHHHHH-HHHHHhcCcccCCc---------cchHHHHHHHHHHHHHHHH--hcCCCHHHHHH
Confidence 699999999999999 69999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.++|.||+++++.+++++++|+..++. +|.|.++.+.+..+++++++|++|++
T Consensus 118 G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~-~g~i~i~~~~~~~~~~~~v~G~~~~~ 196 (542)
T PRK00013 118 GIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGK-EGVITVEESKGFETELEVVEGMQFDR 196 (542)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCc-CCcEEEEEcCCCCceEEEEEeEEecC
Confidence 99999999999999999999988899999999998899999999999999998 78899988777777899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.+|||++++++|+++++||+||++|++|+.
T Consensus 197 g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~ 228 (542)
T PRK00013 197 GYLSPYFVTDPEKMEAELENPYILITDKKISN 228 (542)
T ss_pred CcccccccccccCCeEEEecCEEEEEcCccCC
Confidence 99999999999999999999999999998763
No 9
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-38 Score=295.10 Aligned_cols=175 Identities=34% Similarity=0.523 Sum_probs=168.8
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
+||+||+++++++|| +|+++ +++|++||+++||| |||+++||++||+++.+++ +.|+||..|++
T Consensus 48 nDG~tIlk~i~~~hp~~~~~a~ll-~~~a~~qd~e~GDG---------TTtvviLa~~Ll~~~~~li--~~gi~p~~I~~ 115 (520)
T cd03344 48 KDGVTVAKEIELEDPFENMGAQLV-KEVASKTNDVAGDG---------TTTATVLARAIIKEGLKAV--AAGANPMDLKR 115 (520)
T ss_pred ecHHHHHHHcccCCcchhHHHHHH-HHHHhhhccccCCC---------cchHHHHHHHHHHHHHHHH--hCCCCchHHHH
Confidence 699999999999999 89999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||+.|.+.+++.|+++++++++.+++.++|+||+++++.+++++++|+..++. +|.|.+++|++..|++++++|++|++
T Consensus 116 G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~-~~~i~v~~g~~~~d~~~~~~G~~~~~ 194 (520)
T cd03344 116 GIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGK-DGVITVEEGKTLETELEVVEGMQFDR 194 (520)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhcc-CCcEEEEeCCCcceeEEEEeeEEecC
Confidence 99999999999999999999988999999999999999999999999999998 78898999998888899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||.+|+|++++++|+++++||+||++|++++.
T Consensus 195 g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~ 226 (520)
T cd03344 195 GYLSPYFVTDPEKMEVELENPYILLTDKKISS 226 (520)
T ss_pred CCCCCccccCcccCeEEeeCCEEEEECCCCCC
Confidence 99999999999999999999999999998753
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-38 Score=296.96 Aligned_cols=174 Identities=33% Similarity=0.509 Sum_probs=166.8
Q ss_pred chhhhhhhhccCCCc----ccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNN----RIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP----~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+|||++|+++|| +||++ +++|++||+++||| |||+++||++||+++.+++ ++|+||..|++
T Consensus 51 nDG~tIlk~i~~~hp~~~~~akll-~~~a~~qd~e~GDG---------TTtvviLa~~LL~~a~~li--~~Gihp~~I~~ 118 (541)
T PRK12851 51 NDGVTIAKEIELEDKFENMGAQMV-REVASKTNDVAGDG---------TTTATVLAQAIVREGAKAV--AAGANPMDLKR 118 (541)
T ss_pred cCHHHHHHHccCCCchhhHHHHHH-HHHHHhhhHhhCCC---------ccHHHHHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 699999999999999 89999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.+++.|+++++++++.+++.++|++|+++++.+++++++|+..++. +|.|+++.+....+++++++|++|++
T Consensus 119 G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~-~g~i~i~~~~~~~~~~~~~~G~~~~~ 197 (541)
T PRK12851 119 GIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGN-EGVITVEESKTAETELEVVEGMQFDR 197 (541)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcc-cCceEEEEccCCCcceEEEEEEEecC
Confidence 99999999999999999999888889999999998899999999999999998 78888887766677899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
||.+|||++++++|+.+++||+||++|++++
T Consensus 198 g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~ 228 (541)
T PRK12851 198 GYLSPYFVTDADKMEAELEDPYILIHEKKIS 228 (541)
T ss_pred CccccccccCCCCCeEEecccEEEEEcCCcC
Confidence 9999999999999999999999999999875
No 11
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.6e-38 Score=296.41 Aligned_cols=174 Identities=34% Similarity=0.559 Sum_probs=167.4
Q ss_pred chhhhhhhhccCCCcc----cchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNNR----IKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~----akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+|||++|+++||+ |+++ +++|++||+++||| |||+++||++||+++.+++ ++|+||..|++
T Consensus 51 nDG~tIlk~i~i~hp~~~~ga~ll-~~~a~~qd~e~GDG---------TTt~viLa~~LL~~a~~li--~~GihP~~I~~ 118 (544)
T PRK12850 51 KDGVTVAKEIELEDKFENMGAQMV-KEVASKTNDLAGDG---------TTTATVLAQAIVREGAKLV--AAGMNPMDLKR 118 (544)
T ss_pred ccHHHHHHHhcCCChhhhHHHHHH-HHHHhhhcchhcCC---------cchHHHHHHHHHHHHHHHH--HCCCChHHHHH
Confidence 6999999999999999 9999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
||++|.+.++++|+++++++++.++|.++|++|+++++.+++++++|+..++. +|.|.++.++..++++++++|++|++
T Consensus 119 G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~-~g~i~v~~~~~~g~~~~~v~G~~~~~ 197 (544)
T PRK12850 119 GIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGK-EGVITVEEAKTLGTELDVVEGMQFDR 197 (544)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-cCceeeEEccccCcceEEEEeEEecC
Confidence 99999999999999999999988899999999999999999999999999998 78899987777778899999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
||.||||++++++|+.+++||+||++|++++
T Consensus 198 g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~ 228 (544)
T PRK12850 198 GYLSPYFVTNPEKMRAELEDPYILLHEKKIS 228 (544)
T ss_pred ccCcCccccccccCeEEEeCCEEEEEecccC
Confidence 9999999999999999999999999999875
No 12
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=290.89 Aligned_cols=171 Identities=28% Similarity=0.438 Sum_probs=155.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||||+|+++||+||++ +++|++||+++||| |||+||||++|+++|.+++ ++|+||+.|++||++
T Consensus 51 nDG~tIlkeielehp~akll-~eva~~qd~e~GDG---------TTtavVLa~all~ea~~li--~~gi~P~~I~~G~~~ 118 (524)
T COG0459 51 NDGVTILKEIELEHPGAKLL-VEVAKKQDDEAGDG---------TTTAVVLAGALLKEAEKLI--AAGIHPTVIKRGYRL 118 (524)
T ss_pred cCcceehhhhhccCchhHHH-HHHHHHHHHHhcCc---------hHHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 58999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCCHH-----HHHHHhHhcCCCchhHHHHHHHHHHHhhhc----CCcEEEecCCCcCeeeEEEEe
Q 029600 83 AVDSVLENLSRSAQMISTSE-----EIAQVATTSINGDKDIGALVARTIELVRKA----EGHIFITEGKEPGVKLNLYSG 153 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~~~-----~l~~vA~ts~~~d~~i~~li~~a~~~vg~~----~g~I~i~~g~~~~~~~~lv~G 153 (191)
|.+.+++.|++++.++++.+ ...+++..++++++.+|+++++|+.+|+.. ++.+.+++.++..+++++++|
T Consensus 119 A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG 198 (524)
T COG0459 119 AVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEG 198 (524)
T ss_pred HHHHHHHHHHHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEee
Confidence 99999999999999999765 556666666666789999999999999973 566677777777778999999
Q ss_pred EEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 154 FKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 154 ~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
|+||+||.+|||+++ +.++|||||++|++|+.
T Consensus 199 ~~~dkg~~s~~~~~~-----~~~e~~~Ili~d~~l~~ 230 (524)
T COG0459 199 MVFDKGYLSPYFMPD-----KRLENPKILLLDKKLEI 230 (524)
T ss_pred EEecCCccCCCCCCc-----cccccceEEEEcccccc
Confidence 999999999999543 78899999999999986
No 13
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-37 Score=283.68 Aligned_cols=175 Identities=33% Similarity=0.512 Sum_probs=171.3
Q ss_pred chhhhhhhhccCCCcc----cchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHH
Q 029600 3 RLAFSLASKVRLPNNR----IKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRK 78 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~----akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~ 78 (191)
.||+|+++++++.++. ||++ ++++.++++.+||| |||+++||++|..+|..-+ .+|.+|.+|++
T Consensus 64 kdgvTva~si~l~d~~~n~gaklv-q~va~~tN~~agdG---------tttatvlar~i~~eg~~~v--~~G~npv~irr 131 (550)
T KOG0356|consen 64 KDGVTVAKSIELKDKYENIGAKLV-QDVANNTNEEAGDG---------TTTATVLARAIAKEGFEKV--AKGANPVEIRR 131 (550)
T ss_pred cCCceeeccccccchhhhhccHHH-HHHHhhccCccccC---------cchHHHHHHHHHHHHHHHH--hccCCchhhhh
Confidence 6999999999998887 9999 99999999999999 9999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcc
Q 029600 79 GVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDW 158 (191)
Q Consensus 79 G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~ 158 (191)
|+.+|++.+++.|+++++++++++++.+||++|+|+|..+|+++++|+.++|+ +|+|++++|+.+.|++++++||.||+
T Consensus 132 Gi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~-~GVItv~~gkt~~delev~eGmkfdr 210 (550)
T KOG0356|consen 132 GIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGR-KGVITVKDGKTLEDELEVIEGMKFDR 210 (550)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCc-CCeEEeecCCccccchhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cccCCccccccccCceEecCeEEEEEcccccc
Q 029600 159 GYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 159 gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
||+||||+|+++.+.++|++|++|+++.+|+.
T Consensus 211 GyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~ 242 (550)
T KOG0356|consen 211 GYISPYFITSSKKQKVEFENALLLLSEKKISS 242 (550)
T ss_pred cccCccccccchhhhhhhhhhhhhhhhhhhhH
Confidence 99999999999999999999999999999864
No 14
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-35 Score=274.91 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=153.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||+.
T Consensus 57 nDG~TIlk~i~~~hP~a~ll-~~~a~~q~~~~GDG---------TTt~vvLa~~Ll~~~~~li--~~gi~p~~Ii~g~~~ 124 (522)
T TIGR02345 57 NDGATILKLLDIVHPAAKTL-VDIAKSQDSEVGDG---------TTSVVILAGELLKEAKPFI--EEGVHPQLIIRCYRE 124 (522)
T ss_pred CcHHHHHHHhcccChHHHHH-HHHHHHHHHHhCCC---------chhHHHHHHHHHHhHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC-----CHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhcCC----cEEEe--cCCCcC
Q 029600 83 AVDSVLENLSRSAQMIS-----TSEEIAQVATTSIN------GDKDIGALVARTIELVRKAEG----HIFIT--EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~-----~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~~g----~I~i~--~g~~~~ 145 (191)
|.+.+++.|++++.+++ +.+.+.++|+||++ +++.+++++++|+..++. ++ .|.+. +|++..
T Consensus 125 a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~-~~~~~~~I~i~ki~Ggs~~ 203 (522)
T TIGR02345 125 ALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDI-DDLDLKLIGVKKVQGGSLQ 203 (522)
T ss_pred HHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhh-ccCChhHheEEeecCCCHH
Confidence 99999999999999997 45789999999987 468899999999999986 42 23222 677776
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+ +++++|++|+++|.||+|.+ |+.+++||+|+++|++|+.
T Consensus 204 d-s~~v~Giv~~~~~~~~~~~~----~~~~~~n~kIll~~~~Le~ 243 (522)
T TIGR02345 204 D-SVLVNGVAFKKTFSYAGFEQ----QPKKFANPKILLLNVELEL 243 (522)
T ss_pred h-cceecceEEecccCcccccc----CCceeccceEEEEecCccc
Confidence 5 78999999999999999865 4568999999999999864
No 15
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-34 Score=267.58 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=153.0
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+++++ .++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||++
T Consensus 52 nDG~tIlk~i~~~hP~a~l~-~~~a~~qd~~~GDG---------TTt~vvLa~~Ll~~a~~li--~~gi~P~~I~~g~~~ 119 (484)
T cd03342 52 KDGNVLLSEMQIQHPTASMI-ARAATAQDDITGDG---------TTSNVLLIGELLKQAERYI--QEGVHPRIITEGFEL 119 (484)
T ss_pred ccHHHHHHhccCcCHHHHHH-HHHHHHhhhHhCCC---------hhhHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC---CHHHHHHHhHhcCCCc------hhHHHHHHHHHHHhhhcCC-c-----EEEe--cCCCcC
Q 029600 83 AVDSVLENLSRSAQMIS---TSEEIAQVATTSINGD------KDIGALVARTIELVRKAEG-H-----IFIT--EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~---~~~~l~~vA~ts~~~d------~~i~~li~~a~~~vg~~~g-~-----I~i~--~g~~~~ 145 (191)
|.+.+++.|++++.+++ +.+.+.+||++|++++ +.+++++++|+..++. ++ . |.+. +|++.
T Consensus 120 a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~-~~~~~~~~~I~i~ki~ggs~- 197 (484)
T cd03342 120 AKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYK-PDEPIDLHMVEIMQMQHKSD- 197 (484)
T ss_pred HHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhh-cCCccChhHeEEEEecCCCh-
Confidence 99999999999999997 7889999999999864 8899999999999987 55 2 3332 46655
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+++++++|++|+++|.+|+| +.+++||+|+++|++|+.
T Consensus 198 ~ds~~i~G~~~~~~~~~~~m-------~~~~~n~~Ill~~~~le~ 235 (484)
T cd03342 198 SDTKLIRGLVLDHGARHPDM-------PKRVENAYILTCNVSLEY 235 (484)
T ss_pred hhceEEeeEEEecCCCCCCC-------CccccCceEEEEeCCCCC
Confidence 46999999999999999986 668899999999999875
No 16
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-34 Score=266.55 Aligned_cols=167 Identities=17% Similarity=0.271 Sum_probs=150.9
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+++++ .++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 56 nDG~TIlk~i~i~hP~a~ll-~~~a~~qd~~~GDG---------TTtvvvLa~~Ll~~a~~li--~~gihp~~Ii~g~~~ 123 (531)
T TIGR02347 56 KDGNVLLNEMQIQHPTASMI-ARAATAQDDITGDG---------TTSTVILIGELLKQAERYI--LEGIHPRILTEGFEI 123 (531)
T ss_pred ccHHHHHHhccccChHHHHH-HHHHHHhhhhhcCc---------HHHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccC---CCHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhcCCc-E-----EE-e-cCCCcC
Q 029600 83 AVDSVLENLSRSAQMI---STSEEIAQVATTSING------DKDIGALVARTIELVRKAEGH-I-----FI-T-EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i---~~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~~g~-I-----~i-~-~g~~~~ 145 (191)
|.+.+++.|++++.++ .+.+.+.++|+||+++ ++.+++++++|+..++. +|. | .+ + .|++.
T Consensus 124 a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~-~~~~i~~~~I~i~k~~g~s~- 201 (531)
T TIGR02347 124 ARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKK-DGEQIDLFMVEIMEMKHKSA- 201 (531)
T ss_pred HHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhh-cCCCCChhHeEEEEecCCCc-
Confidence 9999999999999764 4678899999999975 68899999999999987 553 3 33 2 45554
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+++++++|++|+++|.+|+| +.+++||+|+++|++|+.
T Consensus 202 ~ds~~v~Giv~~~~~~~~~~-------~~~~~n~~Ill~~~~le~ 239 (531)
T TIGR02347 202 TDTTLIRGLVLDHGARHPDM-------PRRVKNAYILTCNVSLEY 239 (531)
T ss_pred cccEEEeeEEEecCcCCCCC-------ceeccCceEEEEeCCCCC
Confidence 57999999999999999986 668999999999999874
No 17
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=5.3e-34 Score=264.73 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=154.4
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
+||+||+++++++||+|+++ +++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||++
T Consensus 55 nDG~tIlk~l~~~hP~a~ll-~~~a~~q~~~~GDG---------Ttt~viLa~~ll~~~~~li--~~gi~p~~I~~g~~~ 122 (517)
T cd03343 55 NDGATILKEMDIEHPAAKML-VEVAKTQDEEVGDG---------TTTAVVLAGELLEKAEDLL--DQNIHPTVIIEGYRL 122 (517)
T ss_pred ccHHHHHHHccCcCHHHHHH-HHHHHHHHHHhCCC---------hhHHHHHHHHHHHHHHHHH--HcCCChHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCCCc------hhHHHHHHHHHHHhhhcCCc---------EEE--ecCCC
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSINGD------KDIGALVARTIELVRKAEGH---------IFI--TEGKE 143 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~~d------~~i~~li~~a~~~vg~~~g~---------I~i--~~g~~ 143 (191)
|.+.+++.|++++++++ +.+.+.+||++|++++ +.+++++++|+.+++. ++. |.+ .+|++
T Consensus 123 a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~-~~~~~~~~~~~~I~i~k~~Ggs 201 (517)
T cd03343 123 AAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAE-KRDGKYVVDLDNIKIEKKTGGS 201 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhh-ccCCCccccHHHeeEEeecCcC
Confidence 99999999999999997 6788999999999865 7899999999999987 543 777 47877
Q ss_pred cCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 144 PGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 144 ~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
.+ ++++++|++|+++|.||+| +.+++||+|+++|++|+.
T Consensus 202 ~~-ds~lv~G~v~~~~~~~~~m-------~~~~~n~~Illl~~~Le~ 240 (517)
T cd03343 202 VD-DTELIRGIVIDKEVVHPGM-------PKRVENAKIALLDAPLEV 240 (517)
T ss_pred HH-HcceeeeEEEeccCCCCCC-------ccccCCCcEEEEeccccC
Confidence 76 6999999999999999986 568899999999999753
No 18
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8e-34 Score=263.64 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=152.7
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+|+++ +++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||++
T Consensus 48 nDG~tIlk~l~~~hp~a~ll-~~~a~~q~~~~GDG---------Ttt~vvLa~~ll~~~~~li--~~gi~p~~I~~g~~~ 115 (515)
T cd03338 48 NDGATILKQMSVLHPAAKML-VELSKAQDIEAGDG---------TTSVVVLAGALLSACESLL--KKGIHPTVISESFQI 115 (515)
T ss_pred CcHHHHHHhCcCcCHHHHHH-HHHHHHHHhHhcCC---------cchHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhcCCc----------EEEecCCCc
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELVRKAEGH----------IFITEGKEP 144 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~~g~----------I~i~~g~~~ 144 (191)
|.+.+++.|++++++++ +.+.+.++|+||++ +++.+|+++++|+.+++. ++. |....|++.
T Consensus 116 a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~-~~~~~~~d~~~i~i~~~~Ggs~ 194 (515)
T cd03338 116 AAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVID-PATATNVDLKDIRIVKKLGGTI 194 (515)
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhc-ccccCcCCHHHeEEEEecCCCh
Confidence 99999999999999996 77889999999998 457899999999999987 552 333468777
Q ss_pred CeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 145 GVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 145 ~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
.+ +++++|++|+++|.||++ +|.++.||+|++++++|+.
T Consensus 195 ~d-s~lv~Giv~~k~~~~~~~------~p~~i~n~ki~ll~~~le~ 233 (515)
T cd03338 195 ED-TELVDGLVFTQKASKKAG------GPTRIEKAKIGLIQFCLSP 233 (515)
T ss_pred hh-ceeeeeEEEeccccCcCC------CCccccCCcEEEEeccccc
Confidence 65 799999999999999864 3667889999999998864
No 19
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-34 Score=264.71 Aligned_cols=170 Identities=18% Similarity=0.194 Sum_probs=153.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ +.|+||..|++||+.
T Consensus 56 nDG~tIlk~l~~~hP~akll-~~~a~~q~~~~GDG---------Ttt~viL~~~ll~~~~~li--~~gi~p~~Ii~g~~~ 123 (522)
T cd03340 56 NDGATILKLLDIVHPAAKTL-VDIAKSQDAEVGDG---------TTSVVVLAGEFLKEAKPFI--EDGVHPQIIIRGYRK 123 (522)
T ss_pred ccHHHHHHHccccCHHHHHH-HHHHHHhHhHhCCC---------hhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC------HHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhcCC---cEEEe--cCCCcC
Q 029600 83 AVDSVLENLSRSAQMIST------SEEIAQVATTSIN------GDKDIGALVARTIELVRKAEG---HIFIT--EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~------~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~~g---~I~i~--~g~~~~ 145 (191)
|.+.+++.|++++++++. .+.+.++|+++++ +++.+++++++|+..++. ++ .|.+. .|++..
T Consensus 124 a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~-~~~~~~I~i~~i~Ggs~~ 202 (522)
T cd03340 124 ALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDD-DLDLDMIGIKKVPGGSLE 202 (522)
T ss_pred HHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcc-cCChhHheEeeecCCChh
Confidence 999999999999999864 5669999999987 468899999999999987 55 44443 677765
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
++++++|++|+++|.+|+|.+ |+..++||+|+++|++++.
T Consensus 203 -ds~lv~Giv~~k~~~~~~~~~----~~~~~~n~kIll~~~~Le~ 242 (522)
T cd03340 203 -DSQLVNGVAFKKTFSYAGFEQ----QPKKFKNPKILLLNVELEL 242 (522)
T ss_pred -hceeeeeEEEecccCcccccc----CCccccCCeEEEEeCCCCC
Confidence 489999999999999999855 4567999999999999864
No 20
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.9e-33 Score=261.45 Aligned_cols=168 Identities=15% Similarity=0.214 Sum_probs=151.7
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||+.|++||+.
T Consensus 52 nDG~tIlk~i~~~hP~akll-~~~a~~qd~~~GDG---------TTt~viLa~~Ll~~a~~li--~~gi~p~~I~~g~~~ 119 (536)
T TIGR02340 52 NDGATILKLLEVEHPAAKIL-VELAQLQDREVGDG---------TTSVVIIAAELLKRADELI--KRKVHPTSIISGYRL 119 (536)
T ss_pred ccHHHHHHHhcccChHHHHH-HHHHHHHHHHhCCC---------hhhHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhc-cccCC--CHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhh--cCCc-------EEE--ecCC
Q 029600 83 AVDSVLENLSRS-AQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELVRK--AEGH-------IFI--TEGK 142 (191)
Q Consensus 83 a~~~vl~~L~~~-a~~i~--~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~--~~g~-------I~i--~~g~ 142 (191)
|.+.+++.|+++ +++++ +.+.+.++|+||++ +++.+++++++|+..++. .+|. |.+ ..|+
T Consensus 120 a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~ 199 (536)
T TIGR02340 120 ACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGG 199 (536)
T ss_pred HHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCC
Confidence 999999999985 88987 77889999999997 468899999999999962 1343 233 3677
Q ss_pred CcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 143 EPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 143 ~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+. +++++++|++|+++|.||. |+.+++||+|+++|++|+.
T Consensus 200 s~-~~s~~i~Gi~i~~~~~~~~-------m~~~~~n~kIli~~~~L~~ 239 (536)
T TIGR02340 200 SA-RESYLVKGYALNCTRASQQ-------MPKRIKKAKIACLDFNLQK 239 (536)
T ss_pred Cc-cccEEEEEEEEecccCCCC-------CcceecCCcEEEEecCCCC
Confidence 77 5799999999999999874 6889999999999999864
No 21
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=4.1e-33 Score=259.26 Aligned_cols=168 Identities=21% Similarity=0.271 Sum_probs=152.3
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+|+++ +++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||+.
T Consensus 56 nDG~tIlk~l~~~hP~a~ll-~~~a~~qd~~~GDG---------Ttt~viL~~~ll~~~~~li--~~gi~p~~Ii~g~~~ 123 (519)
T TIGR02339 56 NDGATILKEMDIEHPAAKML-VEVAKTQDAEVGDG---------TTTAVVLAGELLEKAEDLL--EQGIHPTVIIEGYRK 123 (519)
T ss_pred ccHHHHHHhccCCCHHHHHH-HHHHHHHHHHhCCC---------cccHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC--HHHHHHHhHhcCCCc-------hhHHHHHHHHHHHhhh--cCCc-------EEE--ecCC
Q 029600 83 AVDSVLENLSRSAQMIST--SEEIAQVATTSINGD-------KDIGALVARTIELVRK--AEGH-------IFI--TEGK 142 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~--~~~l~~vA~ts~~~d-------~~i~~li~~a~~~vg~--~~g~-------I~i--~~g~ 142 (191)
|.+.+++.|++++++++. .+.+.++|+||++++ +.+++++++|+.+++. ++|. |.+ ..|+
T Consensus 124 a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Gg 203 (519)
T TIGR02339 124 AAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGG 203 (519)
T ss_pred HHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCc
Confidence 999999999999999864 578999999999864 7799999999999984 1453 345 4677
Q ss_pred CcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 143 EPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 143 ~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.. ++++++|++|+++|.+|. |+.+++||+|+++|++|+.
T Consensus 204 s~~-ds~lv~G~vi~~~~~~~~-------m~~~i~n~kIlll~~~Le~ 243 (519)
T TIGR02339 204 SID-DTELVEGIVVDKEPVHPG-------MPKRVKNAKIALLDAPLEV 243 (519)
T ss_pred Chh-cceeEeeEEEecCCCCCC-------CccccCCCcEEEEeccccc
Confidence 775 699999999999999985 5779999999999999753
No 22
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=7.1e-33 Score=253.84 Aligned_cols=167 Identities=29% Similarity=0.355 Sum_probs=153.7
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||++++++.||+|+++ ++++++||+++||| |||++|||++|++++.+++ ++|+||..|++||+.
T Consensus 48 nDG~tIlk~i~~~hp~a~ll-~~~~~~~~~~~GDG---------Ttt~viL~~~ll~~~~~li--~~gi~p~~I~~g~~~ 115 (464)
T cd00309 48 NDGATILKEIEVEHPAAKLL-VEVAKSQDDEVGDG---------TTTVVVLAGELLKEAEKLL--AAGIHPTEIIRGYEK 115 (464)
T ss_pred ccHHHHHHhccCcCHHHHHH-HHHHHHHHhHhCCc---------hhHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhcccc--CCCHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhc-----CCcEEEe--cCCCcCee
Q 029600 83 AVDSVLENLSRSAQM--ISTSEEIAQVATTSIN------GDKDIGALVARTIELVRKA-----EGHIFIT--EGKEPGVK 147 (191)
Q Consensus 83 a~~~vl~~L~~~a~~--i~~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~-----~g~I~i~--~g~~~~~~ 147 (191)
|.+.+++.|++++.+ ..+.+.+.++|+|+++ +++.+++++++|+..++.. .+.|.++ .|+... +
T Consensus 116 a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~~-d 194 (464)
T cd00309 116 AVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLE-D 194 (464)
T ss_pred HHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCcc-c
Confidence 999999999999999 6678899999999998 6889999999999999862 2567776 455554 5
Q ss_pred eEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 148 LNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 148 ~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
+++++|++|+++|.+|+| +.+++||+|+++|++|+
T Consensus 195 s~li~Gi~~~~~~~~~~m-------~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 195 SELVVGMVFDKGYLSPYM-------PKRLENAKILLLDCKLE 229 (464)
T ss_pred ceeeeeEEEecCCCCCCC-------ceeecCceEEEEecCcc
Confidence 889999999999999986 77999999999999986
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.4e-33 Score=255.72 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=151.2
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 56 nDG~tIlk~l~~~hP~a~ll-~~~a~~q~~~~GDG---------Ttt~vvL~~~Ll~~a~~li--~~gi~p~~I~~g~~~ 123 (480)
T cd03337 56 NDGNAILREIDVAHPAAKSM-IELSRTQDEEVGDG---------TTSVIILAGEILAVAEPFL--ERGIHPTVIIKAYRK 123 (480)
T ss_pred ccHHHHHHhccccChHHHHH-HHHHHhHHHHhCCC---------cchhHhhHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhcC-C---------cEEEe--cCC
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELVRKAE-G---------HIFIT--EGK 142 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~~-g---------~I~i~--~g~ 142 (191)
|.+.+++.|++++++++ +.+.+.++|+|+++ +++.+++++++|+..++.++ + .|.++ +|+
T Consensus 124 a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Gg 203 (480)
T cd03337 124 ALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGG 203 (480)
T ss_pred HHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCC
Confidence 99999999999999997 77889999999998 35689999999999998521 3 24454 477
Q ss_pred CcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 143 EPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 143 ~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
+..+ +++++|++|++++.++. |+.+++||+|+++|++|+
T Consensus 204 s~~d-s~li~Gvvi~k~~~~~~-------m~~~~~n~kIlll~~~Le 242 (480)
T cd03337 204 EIED-SRVLDGVMLNKDVTHPK-------MRRRIENPRIVLLDCPLE 242 (480)
T ss_pred CHHh-cccccceEEeccCCCCC-------CCcEecCCCEEEEecCcc
Confidence 7654 99999999999998864 688999999999999986
No 24
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.98 E-value=2e-32 Score=255.24 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=150.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 48 nDG~tIlk~i~~~hP~akll-~~~a~~q~~~~GDG---------TTt~vvLa~~ll~~~~~li--~~gi~p~~Ii~g~~~ 115 (527)
T cd03335 48 NDGATILKLLEVEHPAAKIL-VELAQLQDKEVGDG---------TTSVVIIAAELLKRANELV--KQKIHPTTIISGYRL 115 (527)
T ss_pred CcHHHHHHhccccChHHHHH-HHHHHHHHHHhCCC---------cchHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhh-ccccCC--CHHHHHHHhHhcCC-----C-chhHHHHHHHHHHHhhh--cCCc-------EEE--ecCC
Q 029600 83 AVDSVLENLSR-SAQMIS--TSEEIAQVATTSIN-----G-DKDIGALVARTIELVRK--AEGH-------IFI--TEGK 142 (191)
Q Consensus 83 a~~~vl~~L~~-~a~~i~--~~~~l~~vA~ts~~-----~-d~~i~~li~~a~~~vg~--~~g~-------I~i--~~g~ 142 (191)
|.+.+++.|++ ++++++ +.+.+.++|+||++ . ++.+++++++|+..++. .+|. |.+ ..|+
T Consensus 116 a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Gg 195 (527)
T cd03335 116 ACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGK 195 (527)
T ss_pred HHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCc
Confidence 99999999996 899987 77889999999987 2 37899999999999952 1232 333 3577
Q ss_pred CcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 143 EPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 143 ~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.. ++++++|++|+++|.+|. |+.+++||+|+++|++|+.
T Consensus 196 s~~-~s~li~Givi~~~~~~~~-------m~~~i~n~kIlll~~~Le~ 235 (527)
T cd03335 196 SAK-ESYLVNGYALNCTRASQG-------MPTRVKNAKIACLDFNLQK 235 (527)
T ss_pred Chh-hcceeeeEEEecccCCCC-------CcccccCCcEEEEeccCCC
Confidence 765 699999999999999984 5779999999999999874
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=4e-32 Score=252.94 Aligned_cols=167 Identities=14% Similarity=0.162 Sum_probs=150.7
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||+.
T Consensus 56 nDG~tIl~~l~~~hP~akll-~~~a~~q~~~~GDG---------Ttt~viLa~~Ll~~a~~li--~~gi~p~~I~~g~~~ 123 (525)
T TIGR02344 56 NDGNAILREIDVAHPAAKSM-IELSRTQDEEVGDG---------TTSVIILAGEMLSVAEPFL--EQNIHPTIIIRAYKK 123 (525)
T ss_pred ccHHHHHHhccCCCHHHHHH-HHHHHhhhhhccCC---------cchhHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhcCC-----------cEEEe--cC
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSING------DKDIGALVARTIELVRKAEG-----------HIFIT--EG 141 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~~g-----------~I~i~--~g 141 (191)
|.+.+++.|++++++++ +.+.+.++|+|++++ ++.+++++++|+..++. ++ .|.++ +|
T Consensus 124 a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~-~~~~~~~~~d~~~~I~i~ki~G 202 (525)
T TIGR02344 124 ALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKR-DLGNGRKEIDIKRYAKVEKIPG 202 (525)
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhc-cccCCCCccChhhceEEEEecC
Confidence 99999999999999987 567899999888763 57899999999999986 43 14554 48
Q ss_pred CCcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 142 KEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 142 ~~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+...+ +++++|+.|+++..++ +|+.+++||+|+++|++|+.
T Consensus 203 g~~~d-S~lv~Gvvi~k~~~~~-------~m~~~~~n~kIlll~~~Le~ 243 (525)
T TIGR02344 203 GDIED-SCVLKGVMINKDVTHP-------KMRRYIENPRIVLLDCPLEY 243 (525)
T ss_pred CChHh-cCcccceEEecccCCC-------CCccccCCCCEEEEeccccc
Confidence 88865 9999999999987665 36889999999999999874
No 26
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=9.5e-32 Score=250.32 Aligned_cols=169 Identities=17% Similarity=0.140 Sum_probs=148.4
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+|+++ +++|++||+++||| |||++|||++||+++.+++ ++|+||+.|++||++
T Consensus 49 nDG~tIlk~i~~~hP~akll-~~~a~~qd~~~GDG---------Ttt~viLa~~Ll~~a~~li--~~gi~p~~Ii~g~~~ 116 (517)
T TIGR02342 49 NDGATILKQMGVIHPAAKML-VELSKAQDIEAGDG---------TTSVVILAGALLGACETLL--ERGIHPTTISESFQI 116 (517)
T ss_pred CCHHHHHHhccccChHHHHH-HHHHHHHHHHhCCC---------cchHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc--CCc-----EEEe--cCCCcC
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSING------DKDIGALVARTIELVRKA--EGH-----IFIT--EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~--~g~-----I~i~--~g~~~~ 145 (191)
|.+.+++.|++++.|++ +.+.+.++|+||+++ .+.|++++++|+..++.. ++. |.+. .|++.
T Consensus 117 a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~- 195 (517)
T TIGR02342 117 AADEAIKILDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTI- 195 (517)
T ss_pred HHHHHHHHHHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCCh-
Confidence 99999999999999987 778899999999973 245699999999999751 132 3332 45555
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+++++++|++|+++|.++. +||..++||+|++++++|+.
T Consensus 196 ~ds~li~Givl~k~~~~~~------~mpk~i~n~kI~ll~~~Le~ 234 (517)
T TIGR02342 196 DDTELIEGLVFTQKASRSA------GGPTRIEKAKIGLIQFQISP 234 (517)
T ss_pred hhcEEEeeEEEeccccccC------CCCccccCCcEEEEecCCCC
Confidence 5699999999999998841 35778899999999998864
No 27
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=99.97 E-value=3.7e-32 Score=253.99 Aligned_cols=167 Identities=20% Similarity=0.226 Sum_probs=144.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 67 nDG~TIlk~i~~~hP~akll-~~~a~~qd~~~GDG---------TTtvvvLa~~Ll~~a~~li--~~gi~p~~Ii~g~~~ 134 (533)
T PTZ00212 67 NDGATILKSVWLDNPAAKIL-VDISKTQDEEVGDG---------TTSVVVLAGELLREAEKLL--DQKIHPQTIIEGWRM 134 (533)
T ss_pred ccHHHHHHhccCcCHHHHHH-HHHHHhhhhhhCCc---------hhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC-----HHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc-C-CcEEEe--cCCCcCee
Q 029600 83 AVDSVLENLSRSAQMIST-----SEEIAQVATTSING------DKDIGALVARTIELVRKA-E-GHIFIT--EGKEPGVK 147 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~-----~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~-~-g~I~i~--~g~~~~~~ 147 (191)
|.+.+++.|+++++++++ .+.|.++|+|++++ .+.|++++.+|+..+... + ..|.+. +|++.. +
T Consensus 135 a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~-d 213 (533)
T PTZ00212 135 ALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLR-D 213 (533)
T ss_pred HHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCcc-c
Confidence 999999999999999864 56899999988763 366889999998877531 0 133433 677775 5
Q ss_pred eEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 148 LNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 148 ~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.+++|+++++++.+ .|+.+++||+|+++|++|+.
T Consensus 214 s~lv~G~v~~~~~~~--------~~~~~i~n~kIll~~~~Le~ 248 (533)
T PTZ00212 214 SYLEDGFILEKKIGV--------GQPKRLENCKILVANTPMDT 248 (533)
T ss_pred cEEEEeEEEecccCC--------CCCccccCCcEEEEeCCCCC
Confidence 889999999988643 25779999999999999854
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=4.6e-31 Score=245.75 Aligned_cols=167 Identities=22% Similarity=0.228 Sum_probs=146.8
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 55 nDG~tIlk~l~~~hP~akll-~~~a~~qd~~~GDG---------TTtvvvLa~~Ll~~a~~li--~~gi~p~~I~~g~~~ 122 (517)
T cd03336 55 NDGATILKSIGVDNPAAKVL-VDISKVQDDEVGDG---------TTSVTVLAAELLREAEKLV--AQKIHPQTIIEGYRM 122 (517)
T ss_pred ccHHHHHHHccCcChHHHHH-HHHHHHHHhHhCCC---------hhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC-----CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc--CCcEEEe--cCCCcCee
Q 029600 83 AVDSVLENLSRSAQMIS-----TSEEIAQVATTSING------DKDIGALVARTIELVRKA--EGHIFIT--EGKEPGVK 147 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~-----~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~--~g~I~i~--~g~~~~~~ 147 (191)
|.+.+++.|++++++++ +.+.|.++|+|++++ ++.+++++++|+..++.. -..|.+. +|++.. +
T Consensus 123 a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~~-d 201 (517)
T cd03336 123 ATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSLK-D 201 (517)
T ss_pred HHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCcc-c
Confidence 99999999999999984 246799999977763 578999999999998631 1234544 587775 5
Q ss_pred eEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 148 LNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 148 ~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.+++|++|+++..++ |+.+++||+|+++|++|+.
T Consensus 202 s~l~~G~v~~~~~~~~--------~~~~~~n~kIli~~~~le~ 236 (517)
T cd03336 202 SYLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDT 236 (517)
T ss_pred eEEEeeEEEecccCCC--------CCCeeccccEEEEecCCCc
Confidence 8999999999886432 4779999999999999873
No 29
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.97 E-value=9.7e-32 Score=250.56 Aligned_cols=168 Identities=19% Similarity=0.229 Sum_probs=147.1
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||+.
T Consensus 63 nDG~tIlk~l~~~hP~akll-~~~a~~q~~~~GDG---------Ttt~viLa~~ll~~~~~li--~~gi~p~~Ii~g~~~ 130 (526)
T cd03339 63 NDGATILEKMDVDHQIAKLL-VELSKSQDDEIGDG---------TTGVVVLAGALLEQAEKLL--DRGIHPIRIADGYEQ 130 (526)
T ss_pred CcHHHHHHHhcccCHHHHHH-HHHHHhhhhhhcCC---------hhhHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC----CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc-C-----CcEEEe--cCCCc
Q 029600 83 AVDSVLENLSRSAQMIS----TSEEIAQVATTSING------DKDIGALVARTIELVRKA-E-----GHIFIT--EGKEP 144 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~----~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~-~-----g~I~i~--~g~~~ 144 (191)
|.+.+++.|++++.+++ +.+.+.++|+||+++ .+.+++++.+|+..+... . ..|.+. .|++.
T Consensus 131 a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~ 210 (526)
T cd03339 131 ACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRL 210 (526)
T ss_pred HHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCH
Confidence 99999999999999986 567899999999983 256788888888777431 1 134443 67777
Q ss_pred CeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 145 GVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 145 ~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
. ++++++|++|+++|.||+| +..++||+|++++++|+.
T Consensus 211 ~-dS~~v~Givi~~~~~~~~m-------~~~~~n~kI~ll~~~le~ 248 (526)
T cd03339 211 E-DTKLVKGIVIDKDFSHPQM-------PKEVKDAKIAILTCPFEP 248 (526)
T ss_pred H-HcceeeeEEEecccCCCCC-------CceecCCCEEEEEecccC
Confidence 5 5999999999999999987 457789999999988864
No 30
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=2.1e-31 Score=248.96 Aligned_cols=168 Identities=20% Similarity=0.244 Sum_probs=146.0
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 67 nDG~tIlk~l~~~hP~akll-~~~a~~qd~~~GDG---------TttvvvLa~~Ll~~a~~li--~~gihp~~Ii~g~~~ 134 (532)
T TIGR02343 67 NDGATILSQMDVDNPIAKLM-VELSKSQDDEIGDG---------TTGVVVLAGALLEQAEALL--DKGIHPIKIAEGFEV 134 (532)
T ss_pred CcHHHHHHHccCCCHHHHHH-HHHHHHHHHHhcCC---------cccHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC----HHHHHHHhHhcCCC------chhHHHHHHHHHHHhhh-cCC-----cEEEe--cCCCc
Q 029600 83 AVDSVLENLSRSAQMIST----SEEIAQVATTSING------DKDIGALVARTIELVRK-AEG-----HIFIT--EGKEP 144 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~----~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~-~~g-----~I~i~--~g~~~ 144 (191)
|.+.+++.|++++.+++. .+.+.++|+||++. .+.|++++.+|+..+.. +++ .|.+. .|++.
T Consensus 135 a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~ 214 (532)
T TIGR02343 135 AARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSL 214 (532)
T ss_pred HHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCc
Confidence 999999999999998853 57899999999973 24577788888877642 111 34443 67777
Q ss_pred CeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 145 GVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 145 ~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
.+ +++++|++|+++|.+|+| +..++||+|++++++|+.
T Consensus 215 ~d-s~~v~Gi~i~~~~~~~~m-------~~~~~n~kI~l~~~~le~ 252 (532)
T TIGR02343 215 ED-TKLIKGIIIDKDFSHPQM-------PKEVKDAKIAILTCPFEP 252 (532)
T ss_pred cc-ceeEeeEEEecCcCCCCC-------CeeecCCcEEEEEeeccc
Confidence 65 799999999999999986 557789999999998864
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=1.2e-31 Score=249.92 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=140.7
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+|||++|+++||+||++ +++|++||+++||| |||++|||++||+++.+++ ++|+||..|++||++
T Consensus 56 nDG~tIlk~l~i~hP~akll-~~~a~~qd~~~GDG---------TTtvvvLa~~Ll~~a~~li--~~gihp~~Ii~g~~~ 123 (519)
T TIGR02341 56 NDGATILKSIGVDNPAAKVL-VDMSKVQDDEVGDG---------TTSVTVLAAELLREAEKLV--NQKIHPQTIISGYRR 123 (519)
T ss_pred ccHHHHHHHccCcChHHHHH-HHHHHHhHhhhCCc---------hhHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 59999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC-----HHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc--CCcEEEe--cCCCcCee
Q 029600 83 AVDSVLENLSRSAQMIST-----SEEIAQVATTSING------DKDIGALVARTIELVRKA--EGHIFIT--EGKEPGVK 147 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~-----~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~--~g~I~i~--~g~~~~~~ 147 (191)
|.+.+++.|+++++++++ .++|.++|+|+++. .+.+++++.+|+..+... -..|.+. +|++.. +
T Consensus 124 a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~~-~ 202 (519)
T TIGR02341 124 ATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSLN-D 202 (519)
T ss_pred HHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCcc-c
Confidence 999999999999999853 46899999999973 244677777777666320 1135554 576664 4
Q ss_pred eEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 148 LNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 148 ~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.+++|++|++++.+ .|+.+++||+|+++|++|+.
T Consensus 203 s~l~~G~v~~~~~~~--------~~~~~~~n~~Ili~~~~Le~ 237 (519)
T TIGR02341 203 SYLDEGFLLEKKIGV--------NQPKRIENAKILIANTPMDT 237 (519)
T ss_pred ceEEeeEEEeccCCC--------CCceeeccccEEEEecCCCC
Confidence 778888888877533 25779999999999999975
No 32
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=99.97 E-value=4e-31 Score=247.05 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=144.3
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||+||+++|+++||+|+++ +++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||+.
T Consensus 58 nDG~tIlk~i~~~hP~akll-~e~a~sqd~~~GDG---------TTt~vvLa~~Ll~~~~~li--~~gi~p~~Ii~g~~~ 125 (531)
T TIGR02346 58 NDAATILRELEVQHPAAKLL-VMASEMQENEIGDG---------TNLVIVLAGELLDKAEELI--RMGLHPSEIIKGYEQ 125 (531)
T ss_pred CcHHHHHHhccccCHHHHHH-HHHHHHHhhhhCCC---------hhhHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccc-cCCC---HHHHHHHhHhcCC-----CchhHHHHHHHHHHHhhhcCC--cEEEe-------cCCCc
Q 029600 83 AVDSVLENLSRSAQ-MIST---SEEIAQVATTSIN-----GDKDIGALVARTIELVRKAEG--HIFIT-------EGKEP 144 (191)
Q Consensus 83 a~~~vl~~L~~~a~-~i~~---~~~l~~vA~ts~~-----~d~~i~~li~~a~~~vg~~~g--~I~i~-------~g~~~ 144 (191)
|.+.+++.|++++. ++++ .+.+.++|+++++ +++.+++++++|+..++. ++ .+.++ .|++.
T Consensus 126 a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~-~~~~~~~~~~I~i~ki~G~s~ 204 (531)
T TIGR02346 126 ALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMP-KNPENFNVDNIRVSKIMGGSI 204 (531)
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhh-cCCCcCChhHeeEEEecCCCh
Confidence 99999999999996 6643 6789999988885 378899999999999986 44 33332 67776
Q ss_pred CeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 145 GVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 145 ~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
. ++++++|++|+++.. . ++..++||+|++++.+++.
T Consensus 205 ~-ds~li~Gi~~~~~~~--~-------~~k~i~n~kI~l~~~~l~~ 240 (531)
T TIGR02346 205 S-NSEVLKGMVFNREAE--G-------SVKRVKNAKVAVFSCPLDT 240 (531)
T ss_pred h-hceeEeeeEEeccCC--C-------CceeccCCCEEEEecCcCC
Confidence 5 699999999999832 1 3457888999998888754
No 33
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.1e-31 Score=235.06 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=152.5
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||.||||.+++.||+||.| +++|++||.||||| |||+|+||+++|+++.+++ +.|+||.-|+++|++
T Consensus 60 NDGATIlKlldivhPaaktl-Vdia~sQDaEVGDG---------TTSVv~la~E~lk~~Kpfi--edgv~~~~iir~~rk 127 (543)
T KOG0361|consen 60 NDGATILKLLDIVHPAAKTL-VDIARSQDAEVGDG---------TTSVVLLAAEFLKEAKPFI--EDGVHPQLIIRAYRK 127 (543)
T ss_pred cCcHHHHHHHhhcChhHHHH-HHHHhhccccccCC---------ceeEeeeHHHHHHhhhhHh--hcCCCHHHHHHHHHH
Confidence 58999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--C----HHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc--CCcEEE--ecCCCcCe
Q 029600 83 AVDSVLENLSRSAQMIS--T----SEEIAQVATTSING------DKDIGALVARTIELVRKA--EGHIFI--TEGKEPGV 146 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~----~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~--~g~I~i--~~g~~~~~ 146 (191)
|...+++.+++++..++ + ++-|++.|.|++++ ..+|++++++|+..+... ...|-| .+|+.+++
T Consensus 128 a~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~d 207 (543)
T KOG0361|consen 128 ARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMED 207 (543)
T ss_pred HHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccch
Confidence 99999999999999987 2 35689999998873 578999999999988731 123434 37888875
Q ss_pred eeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 147 KLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 147 ~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.+++|+.|++.|++..|.. +|+++.||+|+++|.++++
T Consensus 208 -S~lv~GVAFkKtFsYAGfEq----qPKk~~NpkIl~LnvELEl 246 (543)
T KOG0361|consen 208 -SLLVNGVAFKKTFSYAGFEQ----QPKKFLNPKILLLNVELEL 246 (543)
T ss_pred -hhhccceeeeehccccchhh----CccccCCceEEEEeeeeee
Confidence 88999999999999999954 5669999999999998875
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=99.96 E-value=1.5e-29 Score=233.34 Aligned_cols=165 Identities=19% Similarity=0.240 Sum_probs=143.2
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
+||+||+++|+++||.|+++ +++|++||+++||| |||++|||++|++++.+++ ++|+||..|++||+.
T Consensus 48 nDG~tIlk~l~~~hP~a~ll-~~~a~~~~~~~GDG---------TTt~vvL~~~Ll~~~~~li--~~gi~p~~Ii~g~~~ 115 (472)
T cd03341 48 SDAATILRELEVQHPAAKLL-VMASQMQEEEIGDG---------TNLVVVLAGELLEKAEELL--RMGLHPSEIIEGYEK 115 (472)
T ss_pred CcHHHHHHhccccCHHHHHH-HHHHHHHhhhhCCC---------hhhHHHHHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhcccc-CC---CHHHHHHHhHhcCC-----CchhHHHHHHHHHHHhhhcC-CcEE-----Ee--cCCCcC
Q 029600 83 AVDSVLENLSRSAQM-IS---TSEEIAQVATTSIN-----GDKDIGALVARTIELVRKAE-GHIF-----IT--EGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~-i~---~~~~l~~vA~ts~~-----~d~~i~~li~~a~~~vg~~~-g~I~-----i~--~g~~~~ 145 (191)
|.+.+++.|++++.+ +. +.+.+.++++++++ +++.+++++++|+..++.++ |.+. +. +|+...
T Consensus 116 a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ 195 (472)
T cd03341 116 ALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE 195 (472)
T ss_pred HHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc
Confidence 999999999999876 43 45678898888864 36789999999999998721 5433 22 677776
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
+ +++++|++|++... .++.+++||+|+++|++|+
T Consensus 196 d-s~lv~Giv~~~~~~---------~~~~~~~n~~Ili~~~~Le 229 (472)
T cd03341 196 D-SKVVRGMVFKREPE---------GSVKRVKKAKVAVFSCPFD 229 (472)
T ss_pred c-ceEEeeEEEccccC---------CCceeccCCcEEEEecccc
Confidence 5 79999999986432 2347899999999999986
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=99.95 E-value=2.2e-28 Score=222.66 Aligned_cols=166 Identities=22% Similarity=0.282 Sum_probs=147.2
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
+||+||+++++++||+++++ ++++++|++++||| |||+++|+++|++++.+++ ++|+||..|++|++.
T Consensus 29 ndg~tIl~~l~~~~P~~~ll-~~~~~~~~~~~GDG---------tts~vlL~~~ll~~~~~li--~~gi~p~~I~~~~~~ 96 (485)
T PF00118_consen 29 NDGATILKSLKINHPIAKLL-VEASKSQDEEVGDG---------TTSVVLLACELLRNALKLI--KKGIHPQEIIRGLQE 96 (485)
T ss_dssp SSHHHHHHHSTBSSHHHHHH-HHHHHHHHHHTSSH---------HHHHHHHHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred echhHHHHHhhhccchhhhH-HHhHHHHHhhhccc---------cceeeecccchhhhhhhhh--hccccccchhhhhhh
Confidence 69999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCCH-HHHHHHhHhcCCCc------hhHHHHHHHHHHHh------hhcCCcEEEecCCCcCeeeE
Q 029600 83 AVDSVLENLSRSAQMISTS-EEIAQVATTSINGD------KDIGALVARTIELV------RKAEGHIFITEGKEPGVKLN 149 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~~-~~l~~vA~ts~~~d------~~i~~li~~a~~~v------g~~~g~I~i~~g~~~~~~~~ 149 (191)
|.+.+++.|.+++.++++. +.+.++|.++++++ +.+++++++|+..+ +. .+.+.+ .|+.. .+++
T Consensus 97 ~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~-i~i~~i-~g~~~-~dS~ 173 (485)
T PF00118_consen 97 ALKIILEYLEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDN-IKIIKI-PGGSI-SDSE 173 (485)
T ss_dssp HHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGG-EEEEEE-ESSSS-GGEE
T ss_pred hhhhhhhhhhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccc-hhhhhh-ccccc-cccc
Confidence 9999999999999999876 89999999999876 78999999999433 22 223333 45555 4689
Q ss_pred EEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 150 LYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 150 lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+++|++|+++|.++. |+..+++|+|+++|++|+.
T Consensus 174 li~Giv~~~~~~~~~-------~~~~~~~~~Ill~~~~L~~ 207 (485)
T PF00118_consen 174 LINGIVLDKGFSSPN-------MPKKIENPKILLLNCPLEY 207 (485)
T ss_dssp EESEEEESSSBSSTT-------SBSEEESEEEEEESSEBSS
T ss_pred cccceeeeccccccc-------cccccccceEEeeeccccc
Confidence 999999999999983 5778899999999999875
No 36
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.6e-26 Score=205.23 Aligned_cols=166 Identities=22% Similarity=0.260 Sum_probs=143.6
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||.|||+++.+.||+||+| +++++-||+|+||| |||++|||.+||+|+.+|+ ++.+||+.|++||++
T Consensus 60 NDGAtILksi~vDnpaAkvL-v~~S~vQD~EvGDG---------TTSV~vlaaeLlreAeklv--~~kiHPq~Ii~GyR~ 127 (527)
T KOG0363|consen 60 NDGATILKSIGVDNPAAKVL-VDISKVQDDEVGDG---------TTSVTVLAAELLREAEKLV--NQKIHPQTIISGYRM 127 (527)
T ss_pred cchHHHHHhcCCCCchhhhe-eccccccccccCCC---------ceehHHHHHHHHHHHHHHH--hcccCcHHHHHHHHH
Confidence 58999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCC-----HHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhcCC---cEEE--ecCCCcCe
Q 029600 83 AVDSVLENLSRSAQMIST-----SEEIAQVATTSING------DKDIGALVARTIELVRKAEG---HIFI--TEGKEPGV 146 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~-----~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~~g---~I~i--~~g~~~~~ 146 (191)
|...+.+.|.+.++.-++ +++|.++|+|.+++ .+.|+++.++|+.++.. .+ .|.| ..|+.++|
T Consensus 128 A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkG-s~nL~~IqIIK~~Gg~l~d 206 (527)
T KOG0363|consen 128 ATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKG-STNLEAIQIIKKLGGKLED 206 (527)
T ss_pred HHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CCCccceeeehhcCCcccc
Confidence 999999999998876542 47899999998863 47799999999988743 22 3444 36778875
Q ss_pred eeEEEEeEEEcccccCCccccccccCceEecCeEEEEEcccccc
Q 029600 147 KLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRL 190 (191)
Q Consensus 147 ~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~ 190 (191)
+.+-+||.+++.+--. .|..++||+||+.|.++..
T Consensus 207 -SfLDeGFlL~K~igv~--------qpkriena~iLIANT~mDt 241 (527)
T KOG0363|consen 207 -SFLDEGFLLDKKIGVN--------QPKRIENAKILIANTPMDT 241 (527)
T ss_pred -ccccccceeccccCCC--------CcccccccceEEecCCCcc
Confidence 7899999999865422 3669999999999987653
No 37
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.2e-25 Score=200.21 Aligned_cols=169 Identities=16% Similarity=0.148 Sum_probs=149.1
Q ss_pred CcchhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHH
Q 029600 1 MLRLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGV 80 (191)
Q Consensus 1 ~~~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~ 80 (191)
|..||..|++++++.||+||.+ .+++++||+||||| |||+++||+++|+++..++ +.++||+.|++++
T Consensus 57 ~tndg~ailrei~Vahpaaksm-iel~rtqdeevgdg---------ttsvi~lagE~L~~~~~~l--~~~~Hp~~i~ka~ 124 (527)
T KOG0364|consen 57 LTNDGNAILREIDVAHPAAKSM-IELSRTQDEEVGDG---------TTSVIILAGEMLNVAEPFL--EEGIHPTVIIKAY 124 (527)
T ss_pred EecCcHHHHHHHhhcCcchhhH-hhhhhcccccccCC---------ceeeeeehHHHhhhcchhh--hcCcchHHHHHHH
Confidence 3568999999999999999999 99999999999999 9999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHhhccccCC--CHHHHHHHhHhcCC------CchhHHHHHHHHHHHhhhcCCc-EEEe--------cCCC
Q 029600 81 QMAVDSVLENLSRSAQMIS--TSEEIAQVATTSIN------GDKDIGALVARTIELVRKAEGH-IFIT--------EGKE 143 (191)
Q Consensus 81 ~~a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~------~d~~i~~li~~a~~~vg~~~g~-I~i~--------~g~~ 143 (191)
.+|++..+..++.++.+++ +...+.++..+|+. ++..++.+..+|+.+|+.++|. |.++ +|+.
T Consensus 125 ~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~ 204 (527)
T KOG0364|consen 125 IKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGL 204 (527)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccc
Confidence 9999999999999888886 55678888887774 3567899999999999984453 4332 5777
Q ss_pred cCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 144 PGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 144 ~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
+++ +.+++|+.+.+...||. |+..++||+|+|+|++++
T Consensus 205 l~~-s~vl~Gv~~nkdv~Hpk-------mrr~IenprivLlD~~Le 242 (527)
T KOG0364|consen 205 LED-SCVLKGVMINKDVTHPK-------MRRAIENPRIVLLDCPLE 242 (527)
T ss_pred ccc-cceecceeeccccCcHH-------HHHHhhcCcEEEecCCcc
Confidence 764 88999999999988885 577999999999999986
No 38
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.3e-25 Score=197.00 Aligned_cols=167 Identities=19% Similarity=0.175 Sum_probs=144.4
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||.||||.|.+-||+|||| ++++..||.++||| |||++|||++||..+.+|+ +.|+||+.|...++.
T Consensus 66 NDGaTILk~m~vlhP~akmL-velS~aQD~eaGDG---------TTsVVilaGaLL~~~~~LL--~kgiHPtvIsdsfq~ 133 (534)
T KOG0358|consen 66 NDGATILKQMNVLHPAAKML-VELSAAQDSEAGDG---------TTSVVILAGALLEAAEKLL--QKGIHPTVISDSFQS 133 (534)
T ss_pred cChHHHHHHHhhhChHHHHH-HHhhhhccccccCC---------ceEEEEehhhHHHHHHHHH--hcCCCchhhhHHHHH
Confidence 58999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCC--CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhcCC-------cEEE--ecCCCcC
Q 029600 83 AVDSVLENLSRSAQMIS--TSEEIAQVATTSING------DKDIGALVARTIELVRKAEG-------HIFI--TEGKEPG 145 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~--~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~~g-------~I~i--~~g~~~~ 145 (191)
|....+++|.+|+.|++ +++.|.+-|+||+|+ +..++.+.++|+.++-..+. .|.+ +-|+..+
T Consensus 134 a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvd 213 (534)
T KOG0358|consen 134 AAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVD 213 (534)
T ss_pred HHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCccc
Confidence 99999999999998886 678899999999984 45688999999998753121 2333 3577774
Q ss_pred eeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 146 VKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 146 ~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
++++++|++|++...... .|.+.++++|-+..+.|+
T Consensus 214 -Dte~i~glvl~~~~~~~~-------gptriekAkIglIQF~iS 249 (534)
T KOG0358|consen 214 -DTELIKGLVLTQKASKSA-------GPTRIEKAKIGLIQFQIS 249 (534)
T ss_pred -hhhhhcceEEeeecccCC-------CcchhhhceeeEEEEEec
Confidence 599999999998755432 466888999998887765
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-22 Score=181.82 Aligned_cols=167 Identities=17% Similarity=0.214 Sum_probs=144.0
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
+||.|||+.+.++||++|+| ++.|..||+++||| ||+++++|++|++.+.+|+ ..++||+.|++||+.
T Consensus 59 ndgAtiL~~l~V~HPa~KiL-velaq~qd~evgDg---------ttsvviia~eLl~~a~~Lv--~~~ihpt~ii~gyr~ 126 (545)
T KOG0360|consen 59 NDGATILSLLEVEHPAAKVL-VELAQLQDEEVGDG---------TTSVVIIAAELLKNADELV--KTKIHPTRIISGYRL 126 (545)
T ss_pred ccHHHHHHhhhhcchHHHHH-HHHHHhccccccCC---------ceEEEEEEHHhhhhHHHhh--cCCCcceehhhhHHH
Confidence 68999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhh-ccccCC--CHHHHHHHhHhcCCC------chhHHHHHHHHHHHhhhc----CC-----cEEEe--cCC
Q 029600 83 AVDSVLENLSR-SAQMIS--TSEEIAQVATTSING------DKDIGALVARTIELVRKA----EG-----HIFIT--EGK 142 (191)
Q Consensus 83 a~~~vl~~L~~-~a~~i~--~~~~l~~vA~ts~~~------d~~i~~li~~a~~~vg~~----~g-----~I~i~--~g~ 142 (191)
|...++++.++ ++.+++ .++-|.++|+|++.+ .+++++++++|+..+... ++ .++|- .|+
T Consensus 127 ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~ 206 (545)
T KOG0360|consen 127 ACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGK 206 (545)
T ss_pred HHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCc
Confidence 99999999887 666665 457799999998863 478999999999987531 22 23432 566
Q ss_pred CcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 143 EPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 143 ~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
+.. ++.++.|+.++....|.. |+..+.|++|+++|+.++
T Consensus 207 s~~-eS~l~~GyaLnc~~asq~-------m~~~i~~~Kiacld~~Lq 245 (545)
T KOG0360|consen 207 SQI-ESMLLPGYALNCSVASQM-------MPLRIKNAKIACLDFTLQ 245 (545)
T ss_pred cch-hheeecceeeeccHhhhc-------cccccccceeeeEecccc
Confidence 654 588999999998877754 677888999999998764
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.3e-22 Score=179.96 Aligned_cols=169 Identities=18% Similarity=0.259 Sum_probs=143.0
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.||-+++++|+|+||.|-++ .-+|..||+..||| ||+.|+|.+++++++..++ +.|+||..|+.|++.
T Consensus 57 kdgnvLl~emQiqhPTa~lI-akaatAqdd~tGDG---------ttS~VlligEllkqa~~~i--~eGlhprii~~gfe~ 124 (520)
T KOG0359|consen 57 KDGNVLLKEMQIQHPTASLI-AKVATAQDDITGDG---------TTSVVLLIGELLKQADRYI--SEGLHPRIITEGFEA 124 (520)
T ss_pred ecchhhHHHHhhcCchHHHH-HHHHHHhhcccCCC---------cceEEEeeHHHHHHHHHHh--hcCCCcchhhhHHHH
Confidence 58899999999999999999 55999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccccCCCHHHHHHHhHhcCCCc------hhHHHHHHHHHHHhhhcCCcEEE------ecCCCcCeeeEE
Q 029600 83 AVDSVLENLSRSAQMISTSEEIAQVATTSINGD------KDIGALVARTIELVRKAEGHIFI------TEGKEPGVKLNL 150 (191)
Q Consensus 83 a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d------~~i~~li~~a~~~vg~~~g~I~i------~~g~~~~~~~~l 150 (191)
|.+.++++|+..+.++ +.+.|.+||++|++.. +.+.+++++|+..+...++.|.+ +.-.....+..+
T Consensus 125 a~~~~l~~L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~ 203 (520)
T KOG0359|consen 125 AKNKALEFLEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSL 203 (520)
T ss_pred HHHHHHhhhhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHH
Confidence 9999999999877766 4778999999999842 45777888888877732443321 111122235789
Q ss_pred EEeEEEcccccCCccccccccCceEecCeEEEEEccccccC
Q 029600 151 YSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFRLE 191 (191)
Q Consensus 151 v~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~~~ 191 (191)
++|.++|||-+||. ||...+|+|||++|..++-|
T Consensus 204 v~glvLdhg~rHpd-------mp~~~e~a~iL~~NvSLEYE 237 (520)
T KOG0359|consen 204 VQGLVLDHGARHPD-------MPRRVEDAYILICNVSLEYE 237 (520)
T ss_pred hhhhhccCCCCCcc-------cccchhceEEEEeecccccc
Confidence 99999999999997 57899999999999988754
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.7e-21 Score=176.42 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=129.8
Q ss_pred chhhhhhhhccCCCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHH
Q 029600 3 RLAFSLASKVRLPNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQM 82 (191)
Q Consensus 3 ~~~~tIl~~i~i~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~ 82 (191)
.|+.||+++++++||+||+| +++++.|+++.||| |+.++|||++||+++.++| ..|++|.+|++||++
T Consensus 66 ndaatIlrelev~HPaakll-v~a~~~q~~~iGDg---------tnfvvvla~~LLe~Ae~li--~~Gl~~~ei~~gy~~ 133 (537)
T KOG0362|consen 66 NDAATILRELEVEHPAAKLL-VEATQMQEEEIGDG---------TNFVVVLAGALLEQAEELI--RMGLTPAEISEGYET 133 (537)
T ss_pred CChHHHHHHhhccCcHHHHH-HHHHHHHHHhhCCC---------ceEeehhHHHHHHHHHHHH--HcCCCHHHHHHHHHH
Confidence 48999999999999999999 99999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhccc----cCCCHHHHHHHhHhcCC--CchhHHHHHHHHHHHhhhcCCcEEEe-------cCCCcCeeeE
Q 029600 83 AVDSVLENLSRSAQ----MISTSEEIAQVATTSIN--GDKDIGALVARTIELVRKAEGHIFIT-------EGKEPGVKLN 149 (191)
Q Consensus 83 a~~~vl~~L~~~a~----~i~~~~~l~~vA~ts~~--~d~~i~~li~~a~~~vg~~~g~I~i~-------~g~~~~~~~~ 149 (191)
|...+++.|.++.. +.+|.++..+.+..|-. +++.+.++|++|+..+.+ .+.++++ .|++.++ +.
T Consensus 134 A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p-~~~FnvdnIrVcKi~Gg~l~~-S~ 211 (537)
T KOG0362|consen 134 ATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILP-LMSFNVDNIRVCKILGGGLED-SC 211 (537)
T ss_pred HHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcc-cccccccceEEEEEecCCccc-ce
Confidence 99999999998663 22345533333322222 367899999999999988 3433221 5777764 88
Q ss_pred EEEeEEEcccccCCccccccccCceEecCeEEEEEccccc
Q 029600 150 LYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 150 lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d~~i~ 189 (191)
++.||+|++.-... ...-...+|.+..+|+.
T Consensus 212 Vv~GmVfkr~~eG~---------v~~ak~arvAvf~cP~d 242 (537)
T KOG0362|consen 212 VVCGMVFKRDPEGE---------VKSAKDARVAVFACPFD 242 (537)
T ss_pred eeEEEEeccccCCc---------ccccccceeEEEecCCC
Confidence 99999999864432 12344566777766654
No 42
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=98.98 E-value=1.2e-09 Score=90.38 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=67.4
Q ss_pred HHHHHHhHhcCC-----CchhHHHHHHHHHHHhhhc-----CCcEEEe--cCCCcCeeeEEEEeEEEcccccCCcccccc
Q 029600 102 EEIAQVATTSIN-----GDKDIGALVARTIELVRKA-----EGHIFIT--EGKEPGVKLNLYSGFKLDWGYSSSCFVTNK 169 (191)
Q Consensus 102 ~~l~~vA~ts~~-----~d~~i~~li~~a~~~vg~~-----~g~I~i~--~g~~~~~~~~lv~G~~~d~gy~s~~fvt~~ 169 (191)
+.+.++|+||++ +++.+++++++|+..++.. .+.|.++ +|++.. ++++++|++|+++|.+|+|
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~~-ds~li~Gv~~~~~~~~~~m---- 76 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLE-DSELVVGVVFDKGYASPYM---- 76 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcChh-hceeEeeEEEeccccCCCC----
Confidence 468899999998 6888999999999999862 2456665 566554 5899999999999999986
Q ss_pred ccCceEecCeEEEEEccccc
Q 029600 170 KKKLCFQSSTYLFLYGETFR 189 (191)
Q Consensus 170 ~~~~~~~~~p~Ill~d~~i~ 189 (191)
+.+++||+|+++|++|+
T Consensus 77 ---~~~~~n~~Ill~~~~le 93 (209)
T cd03333 77 ---PKRLENAKILLLDCPLE 93 (209)
T ss_pred ---CeEcCCCcEEEEeCCee
Confidence 77999999999999886
No 43
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.2e-09 Score=95.93 Aligned_cols=87 Identities=23% Similarity=0.276 Sum_probs=80.0
Q ss_pred CCcccchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHHHHHHHHHHHhhc
Q 029600 15 PNNRIKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRS 94 (191)
Q Consensus 15 ~hP~akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~a~~~vl~~L~~~ 94 (191)
.|+.++++ ...+..|+.++||| ||.+++||+++++++..++ ..|+||..|..||+++...+++.|.++
T Consensus 71 d~~IakLm-v~LS~sqd~eIgdG---------tTgVvvLa~alleqa~~li--~~~ihpiki~~g~e~~~~~av~~l~~i 138 (400)
T KOG0357|consen 71 VHQIAKLI-VILSKSQDDEIGDG---------TTGVVVLAGALLEQAHELI--DRGIHPIKIAQGYEKAKVVAVEHLDEI 138 (400)
T ss_pred chHHHHHH-HHhcccchhhhccC---------CcccEEecccchHhHHhhc--ccccchhHHHHhhhhHHHhhhhhhhhh
Confidence 57789999 88999999999999 9999999999999999999 999999999999999999999999999
Q ss_pred cccCCCHHHHHHHhHhcCC
Q 029600 95 AQMISTSEEIAQVATTSIN 113 (191)
Q Consensus 95 a~~i~~~~~l~~vA~ts~~ 113 (191)
+.+++-.+.+.+|=.+-++
T Consensus 139 ~~~~ef~emi~~vK~~ga~ 157 (400)
T KOG0357|consen 139 SDPFEFEEMIQQIKETGAN 157 (400)
T ss_pred cccccHHHHHHHHHhhCCc
Confidence 9999866677777666554
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=97.77 E-value=4.1e-05 Score=66.22 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=53.8
Q ss_pred chhHHHHHHHHHHHhhhcC--C-------cEEEe--cCCCcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEE
Q 029600 115 DKDIGALVARTIELVRKAE--G-------HIFIT--EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFL 183 (191)
Q Consensus 115 d~~i~~li~~a~~~vg~~~--g-------~I~i~--~g~~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill 183 (191)
.+.+++++++|+..+...+ + .|.|+ .|++.. ++++++|++|+++..++. ||..++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~-dS~li~Gvvi~k~~~~~~-------m~~~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPS-DSEVVDGVVFTKNVAHKR-------MPSKIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHH-HcEEEeeEEEeCCCCCcc-------CCcccCCCcEEE
Confidence 4778999999999885311 1 25554 688775 599999999999988764 577999999999
Q ss_pred Ecccccc
Q 029600 184 YGETFRL 190 (191)
Q Consensus 184 ~d~~i~~ 190 (191)
+|++|+.
T Consensus 92 l~~~Le~ 98 (261)
T cd03334 92 LQGPLEY 98 (261)
T ss_pred Eeeeecc
Confidence 9999875
No 45
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=54.01 E-value=28 Score=33.02 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcCCcEEEecCCCcCe-eeEEEEeEEEcccccCCccccccc
Q 029600 122 VARTIELVRKAEGHIFITEGKEPGV-KLNLYSGFKLDWGYSSSCFVTNKK 170 (191)
Q Consensus 122 i~~a~~~vg~~~g~I~i~~g~~~~~-~~~lv~G~~~d~gy~s~~fvt~~~ 170 (191)
..+++..++. ++.+.++++..... +..-+.|-.++.+|.+|+|+.+++
T Consensus 177 ~~~~l~~i~~-~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~ 225 (533)
T PTZ00212 177 EKDHFAKLAV-DAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFILEKK 225 (533)
T ss_pred hHHHHHHHHH-HHHHHHhccCCccceEEEEecCcCccccEEEEeEEEecc
Confidence 4566677776 67666766544443 456667999999999999988765
No 46
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=46.51 E-value=42 Score=31.82 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCcEEEecCCCcCeeeEEE--EeEEEcccccCCccccccc
Q 029600 122 VARTIELVRKAEGHIFITEGKEPGVKLNLY--SGFKLDWGYSSSCFVTNKK 170 (191)
Q Consensus 122 i~~a~~~vg~~~g~I~i~~g~~~~~~~~lv--~G~~~d~gy~s~~fvt~~~ 170 (191)
.++++..++. ++.+.++++... +.+++. .|..++.+|.+|+|+.+++
T Consensus 166 ~~~~~s~l~~-~av~~i~~~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~ 214 (519)
T TIGR02341 166 HKDHFAQLAV-DAVLRLKGSGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKK 214 (519)
T ss_pred HHHHHHHHHH-HHHHHhccCCCh-hheEEEEccCCCcccceEEeeEEEecc
Confidence 3566666666 676667655444 347777 4999999999999998765
No 47
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=46.25 E-value=35 Score=36.87 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhhhc---------CCcEEEe--cCCCcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEEEEc
Q 029600 117 DIGALVARTIELVRKA---------EGHIFIT--EGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLFLYG 185 (191)
Q Consensus 117 ~i~~li~~a~~~vg~~---------~g~I~i~--~g~~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Ill~d 185 (191)
-+..++-+|...+.++ .+-+.++ .|+.. .+++++.|++|.+-..+ ++|..++++|+|+++.
T Consensus 336 ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~-~dS~vi~Gvv~sKn~~~-------k~M~~~~e~prilll~ 407 (1598)
T KOG0230|consen 336 IITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSR-VDSEVIKGVVCSKNVAH-------KRMATKYENPRILLLG 407 (1598)
T ss_pred HHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCc-ccceeeeEEEeecchhh-------hhhhhhccCCceEEEe
Confidence 3455555555555431 1133443 56664 46999999999987665 3467789999999998
Q ss_pred cccc
Q 029600 186 ETFR 189 (191)
Q Consensus 186 ~~i~ 189 (191)
.+|+
T Consensus 408 g~le 411 (1598)
T KOG0230|consen 408 GPLE 411 (1598)
T ss_pred cchh
Confidence 8765
No 48
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=34.20 E-value=1.5e+02 Score=19.98 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHhchhhcCCChHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCC
Q 029600 55 ESMCNEGRNLLLENAELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSIN 113 (191)
Q Consensus 55 ~~ll~e~~~li~~~~g~~p~~I~~G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~ 113 (191)
+.|++.+..+. ..|+++.. .+...+...+..+.....+.-..+++..+++.+.+
T Consensus 14 ~~lf~~a~~~~--~~~v~~~~---~~~~~v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 14 CTLFRLARRLA--YRGVDQEE---QFRQEVLSLAQAINSNFSPPLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHH--HhCCCHhH---HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45667777777 77888777 44444545555555443333356788888876554
No 49
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=31.26 E-value=89 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhchhhcC-CChHHHHHHHHH
Q 029600 53 LAESMCNEGRNLLLENAE-LDDTEIRKGVQM 82 (191)
Q Consensus 53 La~~ll~e~~~li~~~~g-~~p~~I~~G~~~ 82 (191)
+...+++|+.+++ +.| ++|.+|=++++.
T Consensus 7 l~~~~~~ea~~l~--~egvas~~~ID~~~~~ 35 (97)
T PF00725_consen 7 LLAALLNEAARLV--EEGVASPEDIDRAMRY 35 (97)
T ss_dssp HHHHHHHHHHHHH--HTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHcCCCHHHHHHHHHH
Confidence 4567899999999 999 888887665555
No 50
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=28.50 E-value=24 Score=30.36 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=31.9
Q ss_pred CCcccCCCCCCcchhehHHHHHHHHHHh-chhhcCCChHHHHH
Q 029600 37 GEDIKFMSPYTKYKTVLAESMCNEGRNL-LLENAELDDTEIRK 78 (191)
Q Consensus 37 G~~~~~~~~~TTT~~vLa~~ll~e~~~l-i~~~~g~~p~~I~~ 78 (191)
|.++||--..|.+.+.|.++++-|+.++ + +.|+.|...++
T Consensus 179 ~~ei~~~ptSt~~g~~ilqa~faeai~~mv--~~g~~pPvf~S 219 (243)
T COG4821 179 GSEIKVGPTSTVSGVTILQATFAEAIELMV--EKGYTPPVFLS 219 (243)
T ss_pred CccccccCcchhHHHHHHHHHHHHHHHHHH--hCCCCCCeeee
Confidence 6778888888999999999999998754 5 77887765543
No 51
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.88 E-value=2.4e+02 Score=19.48 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHhHhcCCCchhHHHHHHHH
Q 029600 70 ELDDTEIRKGVQMAVDSVLENLSRSAQMISTSEEIAQVATTSINGDKDIGALVART 125 (191)
Q Consensus 70 g~~p~~I~~G~~~a~~~vl~~L~~~a~~i~~~~~l~~vA~ts~~~d~~i~~li~~a 125 (191)
..+|.++++.++.|-..+-.=+.=.-+|+.+.++..+.+.... .++-.+.++|
T Consensus 3 rasPv~LR~~lE~A~~La~~GIRFVpiPv~~dee~~~L~s~~~---~kLe~ma~~a 55 (61)
T PF07131_consen 3 RASPVDLRKALEMAHSLAHIGIRFVPIPVVTDEEFHTLSSQLS---QKLERMAAEA 55 (61)
T ss_pred CccHHHHHHHHHHHHHHHHcCceeeccccccHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3579999999999863332223334466677777766653222 4455555544
No 52
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.46 E-value=1.9e+02 Score=23.71 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHhhhcCCcEEEecCCCcCeeeEEEEeEEEcccccCCccccccccCceEecCeEEE
Q 029600 115 DKDIGALVARTIELVRKAEGHIFITEGKEPGVKLNLYSGFKLDWGYSSSCFVTNKKKKLCFQSSTYLF 182 (191)
Q Consensus 115 d~~i~~li~~a~~~vg~~~g~I~i~~g~~~~~~~~lv~G~~~d~gy~s~~fvt~~~~~~~~~~~p~Il 182 (191)
.+.++.+|.+|++.-|..+|.|.-+|+... ++-|+.+-.|-++.. +..++++.++.|.|-
T Consensus 20 s~gla~~ie~af~~~G~PngYI~G~E~sGA-----~~~GlrYGeG~L~~k---~~g~~~vyWqGPSiG 79 (160)
T PF06577_consen 20 SEGLAKVIEKAFKDYGRPNGYILGEEASGA-----FVVGLRYGEGTLYTK---NAGQHKVYWQGPSIG 79 (160)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEeeecccc-----EEEEEEecccEEEEc---CCCeeEEEEeCCcee
Confidence 467999999999988866788887776542 566888777766532 344577888888663
No 53
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=23.51 E-value=1e+02 Score=29.45 Aligned_cols=70 Identities=10% Similarity=0.151 Sum_probs=50.2
Q ss_pred cchhhhccccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhc-CCChHHHHHHHHHHHHHHHHHH-hhccc
Q 029600 19 IKVVSGSRLSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENA-ELDDTEIRKGVQMAVDSVLENL-SRSAQ 96 (191)
Q Consensus 19 akll~~~~a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~-g~~p~~I~~G~~~a~~~vl~~L-~~~a~ 96 (191)
.+++ ..+..++|..+..| |-.||..-.+++|-..+.+.+..+. +. |.+|. .++..|.+.+++.. ..+++
T Consensus 299 ~~~~-~~~l~~tD~ri~~~---~~v~p~fl~a~llw~~~~~~~~~~~--~~~~~~~~---~a~~~a~~~~l~~~~~~~~i 369 (472)
T PRK11623 299 ERII-EQVLKNTDTRIHND---MRVNPAFLFAAMFWYPLLEHAQKIA--QESGLAYY---DAFALAMNDVLDEACRSLAI 369 (472)
T ss_pred HHHH-HHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHHHHHHHHH--hhcCCChH---HHHHHHHHHHHHHHhhheeC
Confidence 3577 67888899999988 6777777777777777777777765 54 88775 57788877766543 33444
Q ss_pred c
Q 029600 97 M 97 (191)
Q Consensus 97 ~ 97 (191)
|
T Consensus 370 p 370 (472)
T PRK11623 370 P 370 (472)
T ss_pred c
Confidence 4
No 54
>PF05589 DUF768: Protein of unknown function (DUF768); InterPro: IPR008486 This family consists of several uncharacterised hypothetical proteins from Rhizobium loti (Mesorhizobium loti).
Probab=21.03 E-value=2e+02 Score=19.97 Aligned_cols=47 Identities=23% Similarity=0.206 Sum_probs=31.1
Q ss_pred ccccccccccCCcccCCCCCCcchhehHHHHHHHHHHhchhhcCCChHHHHHHHHHH
Q 029600 27 LSWSRDYVGDGEDIKFMSPYTKYKTVLAESMCNEGRNLLLENAELDDTEIRKGVQMA 83 (191)
Q Consensus 27 a~~qd~~vGDG~~~~~~~~~TTT~~vLa~~ll~e~~~li~~~~g~~p~~I~~G~~~a 83 (191)
-+|..+.+.|. +..-++.+..|.++...-- ++.|+...+|-+-....
T Consensus 10 ~~WI~e~V~~~---------~~~d~is~~~La~kl~adA-~a~Gi~~~ei~eEvg~i 56 (64)
T PF05589_consen 10 DSWIAENVPDT---------PKADIISAAELAEKLFADA-EAAGIPREEIEEEVGSI 56 (64)
T ss_pred HHHHHhcCCCc---------cccchhhHHHHHHHHHHHH-HHcCCCHHHHHHHhccH
Confidence 35667778888 7777777777777666442 36688887765544333
No 55
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=20.46 E-value=1.2e+02 Score=26.64 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=29.9
Q ss_pred CHHHHHHHhHhcCCCchhHHHHHHHHHHHhhhcCCcEEE
Q 029600 100 TSEEIAQVATTSINGDKDIGALVARTIELVRKAEGHIFI 138 (191)
Q Consensus 100 ~~~~l~~vA~ts~~~d~~i~~li~~a~~~vg~~~g~I~i 138 (191)
..++-.+.|.+++.+|.+-++++++++..+| +|.|.+
T Consensus 202 KAeQqk~aavIsAEGds~aA~li~~sla~aG--~gLiel 238 (271)
T KOG3083|consen 202 KAEQQKKAAVISAEGDSKAAELIANSLATAG--DGLIEL 238 (271)
T ss_pred HHhhhhhhheeecccchHHHHHHHHHHhhcC--Cceeee
Confidence 3455667777888899999999999999988 577765
Done!