BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029605
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 190
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 16 PTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRK 75
PTE E VAQA +LEN++ ELK+EL+ L S +IDV G +KA+ I +P + K
Sbjct: 13 PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHK 72
Query: 76 IHTKLVRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAMLEDVVLP 133
+ TKL RELEKKF + VI +A RRIL P + S +RPRSRTLT+VH+ +LED+V P
Sbjct: 73 VQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFP 132
Query: 134 AEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP 187
EIVGKR+RY + G+KI KV LD K+ +YKL++F AVY KL+GK +VF+ P
Sbjct: 133 TEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIP 186
>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 202
Score = 138 bits (347), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 118/190 (62%), Gaps = 5/190 (2%)
Query: 2 FSAQ---KKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNR 58
SAQ +K+ K K A P++ EESVA+ +F+LE +++ L+++L +IN+ P ++
Sbjct: 1 MSAQPHLRKLRKLKRANPSQEEESVARVLFELEGSHKTLRAQLPRFHINTVRTSSSPRHK 60
Query: 59 K-AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQR-PRS 116
K A++I P R RKI L ELEK+F G V+L+A R+I + P +Q+ RS
Sbjct: 61 KTAMIILYPLRFIMLVRKIQRTLTAELEKRFPGNIVVLVAQRKITKRPNDVYKLQQVQRS 120
Query: 117 RTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRK 176
RT +V E +L D++ P ++VG+R RYR DGSK+MKVFLD ++R E +L A VY+
Sbjct: 121 RTSVAVFENILNDLIYPCDVVGRRWRYRTDGSKLMKVFLDARDRKRVESRLPLLAHVYKL 180
Query: 177 LSGKDVVFDF 186
L+ + V F F
Sbjct: 181 LTHRTVTFGF 190
>pdb|2XZM|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 197
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 4 AQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRK---- 59
A K HK + T+ EE V A+ +L+NT+ +LK+ L+ + + + + K
Sbjct: 2 ALAKFHKKQSL--TKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKS 59
Query: 60 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRI-LRPPKKGSAVQRPRSRT 118
AV+I++ ++ + KL+ ELEKK + V A R+I + K+ + QRPRSR
Sbjct: 60 AVLIYVHFQSYRVLLSAARKLIIELEKKLK-QIVFFTAQRKIESKWVKEHKSQQRPRSRC 118
Query: 119 LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 178
LT V++A+L+D++LP+ ++GKRIR RLDG+ ++ LD +R+ E KLD +Y+ ++
Sbjct: 119 LTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVT 178
Query: 179 GKDVVFDF 186
++V F+F
Sbjct: 179 TREVTFEF 186
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 RELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEA 125
RE +K + KD+ A R ++ P KK S V PR R +T+ HEA
Sbjct: 262 REGRRKITMKDLEEAADRVMMLPAKK-SLVLSPRDRRITAYHEA 304
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 82 RELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEA 125
RE +K + KD+ A R ++ P KK S V PR R +T+ HEA
Sbjct: 253 REGRRKITMKDLEEAADRVMMLPAKK-SLVLSPRDRRITAYHEA 295
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 98 TRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAE----IVGKRI 141
+R PP+ G A QRPR R+ + + L+ VLP VG RI
Sbjct: 7 SRNCRNPPRSGDAQQRPRERSGSGMSTTPLQ--VLPGAEPLYSVGSRI 52
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 98 TRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAE----IVGKRI 141
+R PP+ G A QRPR R+ + + L+ VLP VG RI
Sbjct: 5 SRNCRNPPRSGDAQQRPRERSGSGMSTTPLQ--VLPGAEPLYSVGSRI 50
>pdb|2J5U|A Chain A, Mrec Lysteria Monocytogenes
pdb|2J5U|B Chain B, Mrec Lysteria Monocytogenes
Length = 255
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 14 AEPTEFEESVAQAVFDLENT---NQELKSELKDL 44
A+PT F V DL+NT NQ LK L++L
Sbjct: 5 AKPTSFISGAVDGVVDLKNTYTENQHLKERLEEL 38
>pdb|2JFN|A Chain A, Crystal Structure Of Escherichia Coli Glutamate Racemase
In Complex With L-Glutamate And Activator Udp-Murnac-Ala
Length = 285
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 79 KLVRELEKKFSGKDVILIATRRILRP 104
++V E K G+DV L A +RILRP
Sbjct: 164 EMVELAEAKLHGEDVSLDALKRILRP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,360,195
Number of Sequences: 62578
Number of extensions: 207758
Number of successful extensions: 558
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 14
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)