Query 029605
Match_columns 191
No_of_seqs 117 out of 242
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 01:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 3E-100 1E-104 638.0 18.1 187 1-190 1-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 7.6E-86 2.6E-90 554.5 15.8 185 3-190 1-190 (197)
3 2cxc_A NUSA; transcription ter 47.9 71 0.0024 25.0 7.4 100 60-182 37-136 (144)
4 3bwd_D RAC-like GTP-binding pr 38.1 65 0.0022 22.9 5.4 42 59-100 81-122 (182)
5 3reg_A RHO-like small GTPase; 37.3 70 0.0024 23.3 5.6 45 59-103 96-140 (194)
6 4gzl_A RAS-related C3 botulinu 36.8 64 0.0022 24.2 5.4 42 59-100 103-144 (204)
7 1mh1_A RAC1; GTP-binding, GTPa 35.7 76 0.0026 22.5 5.4 42 59-100 78-119 (186)
8 2atx_A Small GTP binding prote 35.2 74 0.0025 23.1 5.4 44 59-102 91-134 (194)
9 2q3h_A RAS homolog gene family 34.3 78 0.0027 23.2 5.4 44 59-102 93-136 (201)
10 1qp6_A Protein (alpha2D); de n 30.5 12 0.0004 23.3 0.2 8 81-88 3-10 (35)
11 2j1l_A RHO-related GTP-binding 30.1 95 0.0032 23.4 5.4 44 59-102 107-150 (214)
12 2zai_A Oligosaccharyl transfer 29.6 87 0.003 29.5 5.9 54 40-99 420-474 (497)
13 2j0v_A RAC-like GTP-binding pr 28.6 1.1E+02 0.0037 22.7 5.4 44 59-102 82-125 (212)
14 2fv8_A H6, RHO-related GTP-bin 28.4 1.1E+02 0.0037 22.8 5.4 42 59-100 98-139 (207)
15 2gco_A H9, RHO-related GTP-bin 28.1 1.1E+02 0.0038 22.6 5.4 44 59-102 98-141 (201)
16 1m7b_A RND3/RHOE small GTP-bin 28.0 1.2E+02 0.0042 21.8 5.6 45 59-103 80-124 (184)
17 2wuj_A Septum site-determining 25.2 18 0.0006 24.1 0.3 31 15-45 24-54 (57)
18 1gwn_A RHO-related GTP-binding 24.3 1.5E+02 0.005 22.4 5.6 44 59-102 101-144 (205)
19 3p7i_A PHND, subunit of alkylp 23.3 36 0.0012 28.5 2.0 53 16-76 223-275 (321)
20 3q3j_B RHO-related GTP-binding 22.2 1.5E+02 0.0052 22.3 5.3 45 59-103 100-144 (214)
21 3n5l_A Binding protein compone 20.7 43 0.0015 27.7 1.9 53 16-76 214-266 (310)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=3.4e-100 Score=637.95 Aligned_cols=187 Identities=51% Similarity=0.813 Sum_probs=178.9
Q ss_pred CCccccccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHHHHHH
Q 029605 1 MFSAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKL 80 (191)
Q Consensus 1 m~~~~~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Kiq~rL 80 (191)
|++.++||+||+ |||||++|||||+|||++|+|||++|++|||++|||||||||+||||||||||||++|||||+||
T Consensus 1 m~~~~~KI~k~~---p~e~E~~vaqal~dLE~~~~dLK~~Lr~L~i~~akEiev~~~kKAivIfVP~p~lk~f~KIq~rL 77 (190)
T 3u5c_H 1 MSAPQAKILSQA---PTELELQVAQAFVELENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKL 77 (190)
T ss_dssp ---CCSSTTCSS---CCSHHHHHHHHHHHHHCSHHHHTTSSSSCCCSCEEEEECTTSCEEEEEEECSSSHHHHHHHTHHH
T ss_pred CCccccccCCCC---CCHHHHHHHHHHHHHhhCcHHHHHhhhcceeeeEEEEEecCCcEEEEEEecHHHHHHHHHHHHHH
Confidence 565578999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCeEEEEeeeeecCCCCCCC--ccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCcc
Q 029605 81 VRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPK 158 (191)
Q Consensus 81 v~ELEKKfsgk~Vv~iaqRrIlpkp~rk~--~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~k 158 (191)
|+||||||||+||+|||||||||||++++ +|+|||||||||||||||||||||+|||||||||++|||+++|||||++
T Consensus 78 vrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeDLv~P~eIVGKRir~rlDGskl~KV~LD~~ 157 (190)
T 3u5c_H 78 TRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSK 157 (190)
T ss_dssp HHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHHHSCSSCEEEEEEEECSSSCEEEEEEECSS
T ss_pred HHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhhcccchheeeeEEEEecCCCEEEEEEECHH
Confidence 99999999999999999999999998886 4999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605 159 ERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 190 (191)
Q Consensus 159 ~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~ 190 (191)
||||+|||+|||++|||+||||||+||||+++
T Consensus 158 ~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 158 DVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp STHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred HhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 99999999999999999999999999999864
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=7.6e-86 Score=554.55 Aligned_cols=185 Identities=35% Similarity=0.572 Sum_probs=177.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeC-CC---eeEEEEEecchhHHHHHHHHH
Q 029605 3 SAQKKIHKDKDAEPTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVP-GN---RKAVVIHIPYRLRKAYRKIHT 78 (191)
Q Consensus 3 ~~~~Ki~K~~g~~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~-~~---kKAivIfVP~~~lk~f~Kiq~ 78 (191)
||++||+|| .+|||||.+|||||+|||++++|||++|++|+|++||||||| || +||||||||+|++++|||||.
T Consensus 1 ~a~~ki~k~--~~p~e~E~~VaqaL~dLE~~~~dLK~~l~~l~i~~aKeiev~~~~~k~kkaivIfVP~~~lk~f~kiq~ 78 (197)
T 2xzm_3 1 MALAKFHKK--QSLTKIEEQVGSALVELQNTHPDLKTSLESIILTQVKEFQINKTNKKAKSAVLIYVHFQSYRVLLSAAR 78 (197)
T ss_dssp -CCTTCSSC--SCCCHHHHHHHHHHHHHHHHCSHHHHHHHHCCEEEEEEEEEECTTCCEEEEEEEEECGGGHHHHHHHHH
T ss_pred CCcccccCC--CCCCHHHHHHHHHHHHHHhcCHHHHHhhhhcceEEEEEEEecCCCCccceEEEEEEccchhhHHHHHHH
Confidence 367899999 799999999999999999877799999999999999999997 66 779999999999999999999
Q ss_pred HHHHHHHhhcCCCeEEEEeeeeecCCCCCC-CccccCCCcchhhHhHhhhhcccccceeeceeEEEeecCceEEEEEeCc
Q 029605 79 KLVRELEKKFSGKDVILIATRRILRPPKKG-SAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDP 157 (191)
Q Consensus 79 rLv~ELEKKfsgk~Vv~iaqRrIlpkp~rk-~~qkRPRSRTLTaVhdaILeDLV~PsEIVGKRir~~lDGskliKV~LD~ 157 (191)
||++|||||| |+||+|||||||||+|+++ .+|+|||||||||||||||||||||+|||||||||++|||+++|||||+
T Consensus 79 rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~ 157 (197)
T 2xzm_3 79 KLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQ 157 (197)
T ss_dssp HHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHHHHHHSTTSCCSEEEEEECSSSCEECCEEEES
T ss_pred HHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHHHHHhccchheeeeEEEEecCCCEEEEEEeCH
Confidence 9999999999 8999999999999999875 4799999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHhhhhCCceEEECCCCC
Q 029605 158 KERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 190 (191)
Q Consensus 158 k~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~ 190 (191)
+||+++|||+|||++||++|||+||+||||+..
T Consensus 158 ~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~ 190 (197)
T 2xzm_3 158 NDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK 190 (197)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred HHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence 999999999999999999999999999999764
No 3
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=47.91 E-value=71 Score=24.96 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=64.0
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCccccCCCcchhhHhHhhhhcccccceeece
Q 029605 60 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGK 139 (191)
Q Consensus 60 AivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlpkp~rk~~qkRPRSRTLTaVhdaILeDLV~PsEIVGK 139 (191)
-+++.|+=-.+-+.--.....++.+.+.+ |..+=+|-. |- =-...+...++|+++.+=
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~-----------------s~----d~~~fI~naLsPA~V~~V 94 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEY-----------------SS----DLERIVKNLFPGVKIESI 94 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEEC-----------------CS----SHHHHHHHHSTTSCEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEc-----------------CC----CHHHHHHHhcCCceEEEE
Confidence 55566654444444444566677777777 988877732 11 123456778899999877
Q ss_pred eEEEeecCceEEEEEeCcccccchhhhhhhHHHHHhhhhCCce
Q 029605 140 RIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDV 182 (191)
Q Consensus 140 Rir~~lDGskliKV~LD~k~~~~ve~Kl~tfs~VYkkLTgKdv 182 (191)
.+--. ||++...|..++.|....--|-..-...-.+|||..+
T Consensus 95 ~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~i 136 (144)
T 2cxc_A 95 NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLF 136 (144)
T ss_dssp EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCee
Confidence 55444 8999999999987765544444444455666776543
No 4
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=38.13 E-value=65 Score=22.86 Aligned_cols=42 Identities=17% Similarity=0.392 Sum_probs=32.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 100 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRr 100 (191)
.++++.+-.....+|..+...+..+++...++.++++++...
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEech
Confidence 466666666677888888777888998887788999998744
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=37.27 E-value=70 Score=23.35 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=36.0
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
.++++.+-.....+|..+...+..+++....+.++++|+...=++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 466666777778899998888889999888888999998865444
No 6
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=36.82 E-value=64 Score=24.16 Aligned_cols=42 Identities=14% Similarity=0.299 Sum_probs=34.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 100 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRr 100 (191)
.++++.+-.....+|..+...+..++++..++.++++++...
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 144 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEech
Confidence 466777777778899998888899999988899999998754
No 7
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=35.72 E-value=76 Score=22.52 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=32.2
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 100 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRr 100 (191)
.++++.+-.....+|..+...+..++.....+.++++|+...
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 119 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECH
T ss_pred cEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcc
Confidence 466666666677888888777788888877788999998754
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=35.20 E-value=74 Score=23.15 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=32.9
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++++.+-.....+|..+...++.++.....+.++++++...=+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45566566666788888876778888887778899999885433
No 9
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=34.27 E-value=78 Score=23.15 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=34.1
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++++.+-.....+|..+...++.++.....+.++++|+...=+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 36676677777788988877788888887778899999885544
No 10
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=30.47 E-value=12 Score=23.26 Aligned_cols=8 Identities=88% Similarity=1.182 Sum_probs=6.9
Q ss_pred HHHHHhhc
Q 029605 81 VRELEKKF 88 (191)
Q Consensus 81 v~ELEKKf 88 (191)
|.||||||
T Consensus 3 veelekkf 10 (35)
T 1qp6_A 3 VEELEKKF 10 (35)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 57999999
No 11
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=30.12 E-value=95 Score=23.38 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=33.6
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++++.+-.....+|..+...+..++.....+.++++|+...=+
T Consensus 107 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45666666667788988877788888887778899999875433
No 12
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=29.63 E-value=87 Score=29.52 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=38.9
Q ss_pred cccceeeeeeEE-EEeCCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeee
Q 029605 40 ELKDLYINSAMQ-IDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATR 99 (191)
Q Consensus 40 ~Lr~L~i~~ake-iev~~~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqR 99 (191)
++--+.|+-.|| |.+..|-.-|..-+-+|. -+-..-+.|||+|+ |-.|++.+.|
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~ 474 (497)
T 2zai_A 420 QMDVFFITKIGENIQLKEGENTVKVRAELPE-----GVISSYKDELQRKY-GDKLIIRGIR 474 (497)
T ss_dssp EEEEEEEEEEEEEEEECSEEEEEEEEEECCT-----THHHHHHHHHHHHH-GGGEEEEEEE
T ss_pred cceEEEEEeccccceeecCccEEEEEeeCch-----hHHHHHHHHHHHhh-CCEEEEEEee
Confidence 334467888999 999988889998888884 12334467899999 5566665554
No 13
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=28.62 E-value=1.1e+02 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=33.2
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++|+.+-.....+|..+...++.++....++.++++|+...=+
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 45666666666788888877788899887778899999875543
No 14
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=28.44 E-value=1.1e+02 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=31.9
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 100 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRr 100 (191)
.++++.+-+....+|..+...+..+++...++.++++|+...
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 139 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEch
Confidence 456666666677888888677788888877788999998854
No 15
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=28.09 E-value=1.1e+02 Score=22.61 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=32.9
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++++.+-.....+|..+...+..+++....+.++++++...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 45666666667788888867788888887778899999885543
No 16
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=28.01 E-value=1.2e+02 Score=21.83 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=33.3
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
.++++.+-.....+|..+...+..++.....+.++++++...=++
T Consensus 80 ~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 80 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 466666677777888887666778887766788999998865443
No 17
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.23 E-value=18 Score=24.13 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHhHhhhcCCHHHHhccccee
Q 029605 15 EPTEFEESVAQAVFDLENTNQELKSELKDLY 45 (191)
Q Consensus 15 ~p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~ 45 (191)
+.|+|=.+|++.+-.|...|.+|+.++..|.
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999888999999887663
No 18
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=24.34 E-value=1.5e+02 Score=22.40 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=32.9
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.++++.+-.....+|..+...+..++.....+.++++|+...=+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 45666666777788888866677888877778899999885544
No 19
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=23.26 E-value=36 Score=28.53 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHH
Q 029605 16 PTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKI 76 (191)
Q Consensus 16 p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Ki 76 (191)
|+++-..+.++|.++. .+.+.++.|..+.+.+-...+-.. |.|++.|..|++.
T Consensus 223 ~~~l~~~l~~aL~~~~-~d~~~~~~l~~~g~~gf~~~~~~d-------y~~ir~l~~~~~~ 275 (321)
T 3p7i_A 223 SETTKDKIYDFFMNYG-KTPEEKAVLERLGWAPFRASSDLQ-------LVPIRQLALFKEM 275 (321)
T ss_dssp CHHHHHHHHHHHHHTT-CSHHHHHHHHHHTEEEEEECCGGG-------GHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCHHHHHHHHhcCcCCeeeCCHHH-------HHHHHHHHHHHHH
Confidence 6788899999999999 568898888888776655444333 6788888888654
No 20
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=22.15 E-value=1.5e+02 Score=22.34 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=34.3
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
.++|+.+-+....+|..+...+..++....++..+++|+...=++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777777888886667778888887889999998865443
No 21
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=20.69 E-value=43 Score=27.66 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHH
Q 029605 16 PTEFEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKI 76 (191)
Q Consensus 16 p~e~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Ki 76 (191)
|.++-..+.++|.++. .+.+.++.|..+.+.+-...+-.. |-|+++|..|++.
T Consensus 214 ~~~l~~~l~~al~~~~-~d~~~~~~l~~~g~~gf~~~~~~~-------y~~ir~l~~~~~~ 266 (310)
T 3n5l_A 214 SDEQKNKLRDFFFKYG-ANAEQKKVLADLQWSKFQASDDDQ-------LLPIRQLELFKQR 266 (310)
T ss_dssp CHHHHHHHHHHHHHCC-CSHHHHHHHHHTTEEEEEECCGGG-------GHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CChhHHHHHHhcCccCceeCCHHH-------HHHHHHHHHHHHH
Confidence 6788899999999999 568899888888777655544332 6778888777654
Done!