Query 029605
Match_columns 191
No_of_seqs 117 out of 242
Neff 3.8
Searched_HMMs 13730
Date Tue Mar 26 01:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029605.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029605hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mh1a_ c.37.1.8 (A:) Rac {Hum 35.3 34 0.0025 23.7 5.4 44 60-103 79-122 (183)
2 d1m7ba_ c.37.1.8 (A:) RhoE (RN 35.0 36 0.0026 23.7 5.6 44 59-102 75-118 (179)
3 d2bcgg2 c.3.1.3 (G:400-446) Gu 31.9 8.7 0.00064 24.0 1.4 24 162-185 21-44 (47)
4 d1z2aa1 c.37.1.8 (A:8-171) Rab 27.9 49 0.0036 22.2 5.1 41 59-100 76-116 (164)
5 d2atxa1 c.37.1.8 (A:9-193) Rho 24.5 66 0.0048 22.2 5.4 44 60-103 83-126 (185)
6 d2bmea1 c.37.1.8 (A:6-179) Rab 22.8 76 0.0055 21.3 5.4 44 59-102 79-122 (174)
7 d1kmqa_ c.37.1.8 (A:) RhoA {Hu 21.8 83 0.006 21.3 5.4 45 59-103 75-119 (177)
8 d2cx4a1 c.47.1.10 (A:4-163) Ba 18.7 62 0.0045 21.7 4.1 41 57-98 30-70 (160)
9 d2cu6a1 d.52.8.2 (A:6-96) Hypo 18.1 42 0.0031 22.0 2.9 67 19-90 2-68 (91)
10 d2ngra_ c.37.1.8 (A:) CDC42 {H 18.0 1.1E+02 0.0079 21.0 5.4 44 59-102 76-119 (191)
No 1
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.29 E-value=34 Score=23.66 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=35.7
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 60 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 60 AivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
++++.+=.....+|+.+..++..+++..-++.++++|+...=++
T Consensus 79 ~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 79 VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred eeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 66666667788999999988889998887888999998865443
No 2
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.97 E-value=36 Score=23.67 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=37.3
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
-++++.+-+....+|+.+..++...++..-.+-++++|+...=+
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 75 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 57777777888999999999988889888889999999986644
No 3
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.87 E-value=8.7 Score=24.01 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.3
Q ss_pred chhhhhhhHHHHHhhhhCCceEEE
Q 029605 162 NTEYKLDTFAAVYRKLSGKDVVFD 185 (191)
Q Consensus 162 ~ve~Kl~tfs~VYkkLTgKdv~Fe 185 (191)
..|.-.+-.-.+|+++||++..|+
T Consensus 21 HFEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 21 HFESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp BSHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hhHHHHHHHHHHHHHhhCCcccee
Confidence 467777888899999999998875
No 4
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.86 E-value=49 Score=22.23 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=31.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 100 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRr 100 (191)
.++++.+-+....+|..++ .++.++.+..++.++++|+.-.
T Consensus 76 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~ 116 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKI 116 (164)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECG
T ss_pred ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccC
Confidence 4566666777888999876 5668888888899999998743
No 5
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.46 E-value=66 Score=22.17 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 60 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 60 AivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
|+++.+=+....+|..+..+...+++...++.++++|+...=|+
T Consensus 83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 126 (185)
T d2atxa1 83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126 (185)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccc
Confidence 55555556778899999888889998888888899998866444
No 6
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.81 E-value=76 Score=21.32 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=33.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
.|+++.+-.....+|..++..+.........+.++++++.-.=+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 122 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence 36776676777899999888888877766678899988875543
No 7
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.80 E-value=83 Score=21.26 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=34.8
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 103 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIlp 103 (191)
.++++.+=+....+|..+..+....+++..++-++++++...=++
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119 (177)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence 366666667778999998888888888877788999998865443
No 8
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=18.68 E-value=62 Score=21.71 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=26.6
Q ss_pred CeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEee
Q 029605 57 NRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIAT 98 (191)
Q Consensus 57 ~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaq 98 (191)
||..++.|+|-.--..+.+ |..-+.++-..|.+..+.+++-
T Consensus 30 gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 30 GRPAVLIFFPAAFSPVCTK-ELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp SSCEEEEECSCTTCHHHHH-HHHHHHHTCTTTSTTCCEEEEE
T ss_pred CCEEEEEecccccCCchhh-hhhhhhcccccccccccccccc
Confidence 6788999987654455554 5566667767776666555543
No 9
>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}
Probab=18.05 E-value=42 Score=22.01 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHHHHHHhHhhhcCCHHHHhcccceeeeeeEEEEeCCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCC
Q 029605 19 FEESVAQAVFDLENTNQELKSELKDLYINSAMQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSG 90 (191)
Q Consensus 19 ~E~~vaqal~dLE~~n~dLK~~Lr~L~i~~akeiev~~~kKAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsg 90 (191)
+|.+|=+||-... .+++...+-+|-+. ++|++.+|+-.+.+-.|.+-......|+...-..|++ +.|
T Consensus 2 le~~v~eaL~~V~--DPe~~~dIv~LGlV--~~i~i~~~~v~v~l~lt~~~cp~~~~i~~~i~~al~~-l~g 68 (91)
T d2cu6a1 2 LEAQAWALLEAVY--DPELGLDVVNLGLI--YDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSR-LPG 68 (91)
T ss_dssp HHHHHHHHHTTCE--ETTTTEETTTTTCE--EEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHT-STT
T ss_pred hHHHHHHHHhcCC--CCCCCcChhhccce--eEEEEeccccEEEEEcCCCCCcHHHHHHHHHHHHHHc-CCC
Confidence 6888888888877 36777777776664 7888888888888888888877777888888888865 445
No 10
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.98 E-value=1.1e+02 Score=21.02 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=34.1
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 029605 59 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 102 (191)
Q Consensus 59 KAivIfVP~~~lk~f~Kiq~rLv~ELEKKfsgk~Vv~iaqRrIl 102 (191)
-++++.+-+....+|+.+..+....++..-.+-++++++...=|
T Consensus 76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl 119 (191)
T d2ngra_ 76 DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119 (191)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGG
T ss_pred ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 46666667778899999988888888777678888888876544
Done!