Query 029607
Match_columns 190
No_of_seqs 132 out of 1609
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 15:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.7E-28 1E-32 202.4 20.7 169 2-171 284-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.6E-27 3.5E-32 200.5 21.1 166 2-167 302-467 (478)
3 PRK01766 multidrug efflux prot 99.9 1.2E-25 2.5E-30 188.2 21.5 166 2-167 282-447 (456)
4 PRK00187 multidrug efflux prot 99.9 9.7E-26 2.1E-30 189.2 20.9 164 2-165 279-447 (464)
5 COG0534 NorM Na+-driven multid 99.9 1.7E-24 3.6E-29 181.1 21.4 185 2-187 60-247 (455)
6 PRK10367 DNA-damage-inducible 99.9 5.1E-24 1.1E-28 177.7 21.9 158 3-161 54-211 (441)
7 PRK09575 vmrA multidrug efflux 99.9 5.7E-24 1.2E-28 178.0 20.7 157 2-161 278-435 (453)
8 PRK00187 multidrug efflux prot 99.9 1.6E-23 3.4E-28 175.8 21.2 158 3-162 54-215 (464)
9 PRK10189 MATE family multidrug 99.9 9.7E-24 2.1E-28 177.6 19.7 158 2-160 72-235 (478)
10 PRK09575 vmrA multidrug efflux 99.9 6.7E-24 1.5E-28 177.6 18.1 159 3-162 57-215 (453)
11 PRK10367 DNA-damage-inducible 99.9 1.3E-21 2.9E-26 163.2 20.1 157 2-166 275-434 (441)
12 PRK01766 multidrug efflux prot 99.9 2.5E-21 5.3E-26 162.1 20.8 160 3-163 56-219 (456)
13 TIGR00797 matE putative efflux 99.9 1.6E-19 3.5E-24 145.4 20.2 159 2-161 36-196 (342)
14 PF01554 MatE: MatE; InterPro 99.8 6.8E-21 1.5E-25 138.0 5.4 127 2-128 36-162 (162)
15 TIGR01695 mviN integral membra 99.8 1.1E-16 2.4E-21 135.3 20.3 150 10-162 275-428 (502)
16 KOG1347 Uncharacterized membra 99.8 4.3E-19 9.4E-24 148.5 5.1 177 2-178 292-468 (473)
17 TIGR02900 spore_V_B stage V sp 99.7 4.8E-16 1E-20 130.9 19.5 151 6-161 283-433 (488)
18 PRK15099 O-antigen translocase 99.5 3.5E-13 7.5E-18 111.8 15.5 142 11-161 55-196 (416)
19 TIGR02900 spore_V_B stage V sp 99.5 1.7E-12 3.8E-17 109.3 18.1 146 12-162 54-204 (488)
20 PF03023 MVIN: MviN-like prote 99.5 7.1E-12 1.5E-16 105.1 20.7 150 10-162 250-403 (451)
21 TIGR01695 mviN integral membra 99.4 6.2E-11 1.3E-15 100.3 18.6 138 21-161 63-206 (502)
22 COG0728 MviN Uncharacterized m 99.4 1.5E-10 3.2E-15 97.6 19.4 150 10-162 284-437 (518)
23 PRK15099 O-antigen translocase 99.3 3.9E-10 8.4E-15 93.6 18.4 145 6-160 264-410 (416)
24 KOG1347 Uncharacterized membra 99.3 2.6E-10 5.6E-15 95.9 15.6 154 7-162 77-230 (473)
25 PF03023 MVIN: MviN-like prote 99.2 6E-09 1.3E-13 87.6 19.9 147 13-163 32-183 (451)
26 PRK10459 colanic acid exporter 99.1 3.4E-08 7.4E-13 83.6 20.5 141 14-161 264-404 (492)
27 COG2244 RfbX Membrane protein 99.1 4.1E-08 8.8E-13 82.8 19.6 137 3-144 258-394 (480)
28 TIGR00797 matE putative efflux 99.0 2.8E-09 6E-14 85.9 10.4 83 2-84 259-341 (342)
29 PF14667 Polysacc_synt_C: Poly 98.4 4.9E-06 1.1E-10 58.9 11.2 79 81-162 2-80 (146)
30 COG0728 MviN Uncharacterized m 98.3 7.3E-05 1.6E-09 63.6 16.2 149 13-162 65-216 (518)
31 PF13440 Polysacc_synt_3: Poly 98.1 0.0016 3.6E-08 49.7 19.5 131 16-158 39-169 (251)
32 PF01943 Polysacc_synt: Polysa 98.0 0.0012 2.5E-08 51.0 17.1 138 11-161 53-190 (273)
33 PRK10459 colanic acid exporter 97.8 0.00089 1.9E-08 56.8 14.3 114 36-156 75-188 (492)
34 PF04506 Rft-1: Rft protein; 97.6 0.0023 4.9E-08 55.3 13.3 125 32-161 339-469 (549)
35 COG2244 RfbX Membrane protein 97.2 0.025 5.5E-07 47.8 14.7 95 11-116 60-155 (480)
36 KOG2864 Nuclear division RFT1 96.9 0.019 4.1E-07 48.0 10.8 146 13-160 297-447 (530)
37 PF07260 ANKH: Progressive ank 96.4 0.21 4.6E-06 40.1 13.4 107 22-130 72-180 (345)
38 COG4267 Predicted membrane pro 92.2 6 0.00013 32.8 15.9 136 9-161 75-210 (467)
39 PRK11085 magnesium/nickel/coba 63.6 32 0.00068 27.9 6.5 14 151-164 302-315 (316)
40 COG0170 SEC59 Dolichol kinase 63.5 12 0.00027 28.4 4.0 50 7-56 118-167 (216)
41 PRK09546 zntB zinc transporter 55.4 51 0.0011 26.5 6.4 49 112-164 266-323 (324)
42 PF11457 DUF3021: Protein of u 53.3 72 0.0016 21.9 16.4 30 32-62 2-31 (136)
43 TIGR00383 corA magnesium Mg(2+ 52.4 68 0.0015 25.6 6.7 56 106-164 254-317 (318)
44 PF01148 CTP_transf_1: Cytidyl 49.0 1.2E+02 0.0025 23.1 8.2 49 5-53 132-181 (259)
45 PF04505 Dispanin: Interferon- 47.7 70 0.0015 20.2 5.3 31 19-49 41-71 (82)
46 PF05975 EcsB: Bacterial ABC t 46.8 1.7E+02 0.0036 24.3 17.5 36 30-65 89-124 (386)
47 PF14184 YrvL: Regulatory prot 46.0 1E+02 0.0022 21.5 11.1 111 40-154 6-117 (132)
48 PF14936 p53-inducible11: Tumo 45.7 1.2E+02 0.0026 22.3 9.8 82 20-105 33-116 (179)
49 PRK10739 putative antibiotic t 43.3 1.4E+02 0.003 22.4 9.0 63 17-83 19-81 (197)
50 PRK15132 tyrosine transporter 36.6 2.6E+02 0.0056 23.5 12.0 39 11-51 193-231 (403)
51 PF10160 Tmemb_40: Predicted m 36.0 2.2E+02 0.0047 22.5 8.6 93 30-125 110-202 (261)
52 PRK10484 putative transporter; 35.3 3E+02 0.0064 23.9 10.7 28 19-46 261-288 (523)
53 COG0306 PitA Phosphate/sulphat 33.6 2.7E+02 0.0058 22.8 9.3 117 14-132 177-317 (326)
54 KOG4453 Predicted ER membrane 32.8 66 0.0014 24.8 3.4 54 8-61 161-214 (269)
55 COG3071 HemY Uncharacterized e 32.4 2.1E+02 0.0046 24.0 6.5 80 6-85 5-84 (400)
56 PF08837 DUF1810: Protein of u 32.0 1.9E+02 0.004 20.5 7.8 90 21-112 48-137 (139)
57 COG0598 CorA Mg2+ and Co2+ tra 30.4 2.9E+02 0.0063 22.2 9.9 74 87-164 240-321 (322)
58 PF01102 Glycophorin_A: Glycop 30.1 96 0.0021 21.4 3.7 13 138-150 67-79 (122)
59 PF14248 DUF4345: Domain of un 29.8 1.8E+02 0.0039 19.7 13.8 50 35-84 1-50 (124)
60 PRK14472 F0F1 ATP synthase sub 28.8 1.3E+02 0.0029 21.7 4.5 32 136-167 12-43 (175)
61 PF07074 TRAP-gamma: Transloco 26.4 2.6E+02 0.0057 20.5 7.0 43 119-161 26-68 (170)
62 PRK09442 panF sodium/panthothe 26.3 4.1E+02 0.0089 22.7 10.7 29 21-49 256-284 (483)
63 TIGR02896 spore_III_AF stage I 26.3 2.1E+02 0.0045 19.2 4.9 23 57-79 43-65 (106)
64 PHA02673 ORF109 EEV glycoprote 25.2 1.4E+02 0.0031 21.5 3.9 27 29-55 23-49 (161)
65 KOG3098 Uncharacterized conser 25.1 4.5E+02 0.0097 22.7 10.6 33 10-42 282-314 (461)
66 PF01914 MarC: MarC family int 23.9 3.2E+02 0.0068 20.5 9.1 60 19-82 21-80 (203)
67 COG1738 yhhQ Uncharacterized m 22.9 3.6E+02 0.0079 20.8 13.4 79 13-97 63-141 (233)
68 TIGR00427 membrane protein, Ma 22.9 3.3E+02 0.0072 20.4 8.9 61 18-82 23-83 (201)
69 PF02687 FtsX: FtsX-like perme 22.5 2.2E+02 0.0048 18.2 7.3 46 22-67 32-77 (121)
70 PHA03093 EEV glycoprotein; Pro 22.4 2.4E+02 0.0052 21.0 4.7 33 22-54 19-51 (185)
71 PRK13460 F0F1 ATP synthase sub 22.2 2.3E+02 0.005 20.5 4.7 31 136-166 10-40 (173)
72 PF10777 YlaC: Inner membrane 22.1 3.1E+02 0.0067 19.7 5.3 38 117-154 41-78 (155)
73 PRK10483 tryptophan permease; 21.4 5.1E+02 0.011 22.0 11.4 37 13-51 206-242 (414)
74 PF11286 DUF3087: Protein of u 21.0 2.9E+02 0.0062 20.2 4.8 37 30-69 7-43 (165)
75 PRK00523 hypothetical protein; 20.9 2.2E+02 0.0048 17.6 4.4 29 138-166 4-32 (72)
76 PF06783 UPF0239: Uncharacteri 20.8 1.7E+02 0.0037 18.7 3.2 29 30-58 14-42 (85)
77 PRK10207 dipeptide/tripeptide 20.4 4.5E+02 0.0098 22.5 6.8 21 51-71 467-487 (489)
78 PRK13453 F0F1 ATP synthase sub 20.3 3.5E+02 0.0075 19.6 5.9 25 142-166 18-42 (173)
79 PF05393 Hum_adeno_E3A: Human 20.2 2.2E+02 0.0047 18.5 3.6 25 135-159 30-54 (94)
80 PF03904 DUF334: Domain of unk 20.2 4.2E+02 0.009 20.5 7.5 38 30-68 142-179 (230)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.96 E-value=4.7e-28 Score=202.41 Aligned_cols=169 Identities=27% Similarity=0.474 Sum_probs=163.3
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++.++.++++.|+++|+++++||++|+||+||+++..+.+..++..++...+.+++.+++++.++|++|||+.+.+..++
T Consensus 284 ~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l 363 (455)
T COG0534 284 RIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILL 363 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
++.+...++++.+.+..+++||.||++.|++.++.++|++++|+.|++.... +|..|+|+++..++.+..+...+++++
T Consensus 364 ~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~ 442 (455)
T COG0534 364 LIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRR 442 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999986 799999999999999999999999999
Q ss_pred cchHHHHHHH
Q 029607 162 TNWNAEVTSW 171 (190)
Q Consensus 162 ~~~~~~~~~~ 171 (190)
.+|++...+.
T Consensus 443 ~~~~~~~~~~ 452 (455)
T COG0534 443 GRWRRKAVAA 452 (455)
T ss_pred hhhhhhhhhc
Confidence 9998776554
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.96 E-value=1.6e-27 Score=200.47 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=161.0
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
|++++.+++..|+++|+++++||++|+||+||+|+..+.+...+.++++.++++.+.+++++.++|++|||+.+.+..++
T Consensus 302 ~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l 381 (478)
T PRK10189 302 SIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILI 381 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
++.+...++++.+.+..+.+||.||++.++++++.+.|++++|+.|++....++|+.|+|++..+++.+.+++.++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~ 461 (478)
T PRK10189 382 WLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVS 461 (478)
T ss_pred HHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred cchHHH
Q 029607 162 TNWNAE 167 (190)
Q Consensus 162 ~~~~~~ 167 (190)
.+|++.
T Consensus 462 ~~W~~~ 467 (478)
T PRK10189 462 GRWLWK 467 (478)
T ss_pred CccccC
Confidence 999873
No 3
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.95 E-value=1.2e-25 Score=188.19 Aligned_cols=166 Identities=25% Similarity=0.425 Sum_probs=158.2
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++.++.++++.|++.|+++++||++|+||+||+++..+.++.++..++++.+.+.+.+++++.++|++|||+.+.+..++
T Consensus 282 ~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l 361 (456)
T PRK01766 282 NFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLL 361 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
++..+..++++++.+..+++||.||++.+++.++++.|++++|..|++.+..++|+.|+|+++.+++.+.+++.++++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~ 441 (456)
T PRK01766 362 LFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRK 441 (456)
T ss_pred HHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999998888999999999999999999998888877
Q ss_pred cchHHH
Q 029607 162 TNWNAE 167 (190)
Q Consensus 162 ~~~~~~ 167 (190)
.+|+..
T Consensus 442 ~~~~~~ 447 (456)
T PRK01766 442 LQRQPS 447 (456)
T ss_pred HHHHHh
Confidence 766653
No 4
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=9.7e-26 Score=189.16 Aligned_cols=164 Identities=23% Similarity=0.414 Sum_probs=153.0
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC--cH---HHHHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS--NS---EVVQA 76 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~v~~~ 76 (190)
++..+.+.+..|++.|+++++||++|+||+||+++..+.++..+.+++++++++.+.+++++.++|++ || |+.+.
T Consensus 279 ~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~ 358 (464)
T PRK00187 279 QIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQL 358 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999964 44 79999
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 029607 77 VSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLN 156 (190)
Q Consensus 77 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~ 156 (190)
+..|+++.+++.++++.+.++.+++||.||++.+++.++.+.|++++|++|++.+.+++|+.|+|+++.+++.+..+...
T Consensus 359 ~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~ 438 (464)
T PRK00187 359 AVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALT 438 (464)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999988877
Q ss_pred HHHhhcchH
Q 029607 157 ILTVRTNWN 165 (190)
Q Consensus 157 ~~~~~~~~~ 165 (190)
..+++++|+
T Consensus 439 ~~~~~~~~~ 447 (464)
T PRK00187 439 LAFEWKTAR 447 (464)
T ss_pred HHHHHHHHH
Confidence 666554443
No 5
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=1.7e-24 Score=181.08 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=164.4
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++..+.+.+..|++.|+++++||++|+||+|++++..+++++.+++++++..++.+.+++++..+++.|+|+.+.+.+|+
T Consensus 60 ~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl 139 (455)
T COG0534 60 PIFFLIIAIFIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYL 139 (455)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh-cC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK-TN-IGVVGIWWGMITGVLLQTITLNILT 159 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~ 159 (190)
++..++.|+..+..++.+.+|+.||+|.||++++++ .+.|++++|++.++ ++ +|+.|+.+|+.+++++..+...+++
T Consensus 140 ~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~ 218 (455)
T COG0534 140 RIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYL 218 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 59999999999999 57 9999999999999999999988888
Q ss_pred hhcchH-HHHHHHHHHhhhHhhcchhHhh
Q 029607 160 VRTNWN-AEVTSWFYELCYVIVSNLSQLL 187 (190)
Q Consensus 160 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 187 (190)
.+++.. ........+.++...+++.++.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~i~~lG 247 (455)
T COG0534 219 LRKKRLLSLFKKKLLKPDRKLLKEILRLG 247 (455)
T ss_pred HhcchhhhhhhhhccCCCHHHHHHHHHhc
Confidence 776642 2222222355556666655543
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=5.1e-24 Score=177.71 Aligned_cols=158 Identities=9% Similarity=0.042 Sum_probs=148.7
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
+..+.+.+..+++.++++++||++|+||+||+++..++++..+.++++++..+...+.+++.++++.|||+.+.+.+|++
T Consensus 54 i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~ 133 (441)
T PRK10367 54 ATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLE 133 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677888899999999999999999999999999999999999999999989899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
+..++.|+.....++.+++||.||++.|++.++++ .+++++++|++.+.+++|+.|+++|+.+++.+..++..+++.+
T Consensus 134 i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 134 IRWLSAPASLANLVLLGWLLGVQYARAPVILLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 5889999999999999999999999999999988877666654
No 7
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=5.7e-24 Score=178.01 Aligned_cols=157 Identities=17% Similarity=0.251 Sum_probs=146.4
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC-cHHHHHHHHhH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS-NSEVVQAVSDL 80 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~~~~~~~ 80 (190)
++..+.+++..|++.|+++++||++|+||+||+++..+.++.+++..+++++++.+.+++++.++|++ |||+.+.+.+|
T Consensus 278 ~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~ 357 (453)
T PRK09575 278 YLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVG 357 (453)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607 81 TPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV 160 (190)
Q Consensus 81 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 160 (190)
+++..++.++++.+.+..+++||.||++.++..++.+ +++++|..|++... +|+.|+|+++.+++.+..++...+++
T Consensus 358 l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~ 434 (453)
T PRK09575 358 IRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLW 434 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887 57899999998754 59999999999999998887766654
Q ss_pred h
Q 029607 161 R 161 (190)
Q Consensus 161 ~ 161 (190)
+
T Consensus 435 ~ 435 (453)
T PRK09575 435 R 435 (453)
T ss_pred H
Confidence 3
No 8
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=1.6e-23 Score=175.84 Aligned_cols=158 Identities=18% Similarity=0.062 Sum_probs=143.3
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
+..+.+++..|++.|+++++||++|+||+||+++..++++.++.+++++..++.+ +.+++.++|+.|||+.+.+.+|++
T Consensus 54 i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~ 132 (464)
T PRK00187 54 SYSFVSIFCVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLH 132 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4567778899999999999999999999999999999999999999998777655 679999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHH
Q 029607 83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKT----NIGVVGIWWGMITGVLLQTITLNIL 158 (190)
Q Consensus 83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~----~~g~~g~~~a~~i~~~~~~~~~~~~ 158 (190)
+..++.|+..+...+++++||.||++.+++.++++ .+++++++|++.+++ ++|+.|+++|+++++....+...++
T Consensus 133 i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~ 211 (464)
T PRK00187 133 LLPFALPGYLSFMALRGFTSALGRAGPVMVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALY 211 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 578999999999763 5899999999999988877766655
Q ss_pred Hhhc
Q 029607 159 TVRT 162 (190)
Q Consensus 159 ~~~~ 162 (190)
++++
T Consensus 212 ~~~~ 215 (464)
T PRK00187 212 IRRH 215 (464)
T ss_pred HHhc
Confidence 5543
No 9
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=9.7e-24 Score=177.62 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=147.1
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC--CcHHHHHHHHh
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFT--SNSEVVQAVSD 79 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~ 79 (190)
++..+.+.+..|++.|+++++||++|+||+||+++..++++.++..++++.+.+.+.+++++.++|+ .|||+.+.+.+
T Consensus 72 ~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~ 151 (478)
T PRK10189 72 SFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALT 151 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHH
Confidence 4567788899999999999999999999999999999999999999999999999999999999995 69999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHH
Q 029607 80 LTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITL 155 (190)
Q Consensus 80 ~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~ 155 (190)
|+++..++.|+.+++.++.+++||.||++.+++.++.+ +++++++++++.+. +++|+.|+|+|+.+++.+..++.
T Consensus 152 Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~ 230 (478)
T PRK10189 152 YLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 68999999999986 37899999999999999988876
Q ss_pred HHHHh
Q 029607 156 NILTV 160 (190)
Q Consensus 156 ~~~~~ 160 (190)
.+++.
T Consensus 231 ~~~~~ 235 (478)
T PRK10189 231 IWVLM 235 (478)
T ss_pred HHHHH
Confidence 65554
No 10
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.92 E-value=6.7e-24 Score=177.58 Aligned_cols=159 Identities=11% Similarity=0.033 Sum_probs=148.8
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
+..+...+..+++.|+++++||++|+||+||+++..++++.++.+++++++++...+++++.++|+.|+|+.+.+.+|++
T Consensus 57 ~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~ 136 (453)
T PRK09575 57 VIGIILGIGLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQ 136 (453)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
+..++.++........+++|+.||++.+++.++.+ .++++++++++.+.+++|+.|+++|+.+++.+..+...+++.++
T Consensus 137 i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 137 VLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999 58999999999998899999999999999999988877666543
No 11
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=1.3e-21 Score=163.23 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=132.7
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
|+.++.++++.|+++|+++++||++|+||+||+|+..+.+...+.+++.+++++.+.+++++.++|++|||+.+.+..++
T Consensus 275 ~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l 354 (441)
T PRK10367 275 TLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYL 354 (441)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccC---cchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSG---WQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNIL 158 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~ 158 (190)
++..+..+.........++++|.+ |++.++++++++.|+..++. +++|+.|+|+++.+++.+.+++...+
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~ 427 (441)
T PRK10367 355 IWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAI 427 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 999876443334444444455555 59999999999977522222 24699999999999999999987766
Q ss_pred HhhcchHH
Q 029607 159 TVRTNWNA 166 (190)
Q Consensus 159 ~~~~~~~~ 166 (190)
+++ +|++
T Consensus 428 ~~~-~~~~ 434 (441)
T PRK10367 428 WRR-HWRN 434 (441)
T ss_pred HHH-HHhc
Confidence 554 4744
No 12
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.89 E-value=2.5e-21 Score=162.11 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=147.1
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
+..+.+.+..|++.+.++.+||++|+||+|++++..++++..++.++++++.+.+.+++++.++|+.|||+.+.+.+|++
T Consensus 56 ~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~ 135 (456)
T PRK01766 56 IWLPVILFGHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLH 135 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34556678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607 83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITLNIL 158 (190)
Q Consensus 83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~ 158 (190)
+..++.++.....++++++||.||++.+++.++++ .++++++++++.+. +++|+.|+++++.+++.+..+...++
T Consensus 136 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~ 214 (456)
T PRK01766 136 ALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIY 214 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 48899999999864 36799999999999999998887777
Q ss_pred Hhhcc
Q 029607 159 TVRTN 163 (190)
Q Consensus 159 ~~~~~ 163 (190)
.++++
T Consensus 215 ~~~~~ 219 (456)
T PRK01766 215 IKRAR 219 (456)
T ss_pred HHhCh
Confidence 66543
No 13
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.85 E-value=1.6e-19 Score=145.42 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=146.6
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++.++...+..|++++..+.++++.|++|+|++++..+.+...+.+++++.+++.+.+++++.++|+.|||..+.+.+++
T Consensus 36 ~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 115 (342)
T TIGR00797 36 SVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYL 115 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHH
Confidence 34567778899999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHH-hcC-CCchhHHHHHHHHHHHHHHHHHHHH
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGF-KTN-IGVVGIWWGMITGVLLQTITLNILT 159 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~ 159 (190)
++..++.++.+.+....+++|+.||++.+++.++.+ .+++++.++++.. .++ +|+.|+++++.+++.+..+...++.
T Consensus 116 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~ 194 (342)
T TIGR00797 116 RILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYI 194 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 4789999998887 567 7899999999999999888776666
Q ss_pred hh
Q 029607 160 VR 161 (190)
Q Consensus 160 ~~ 161 (190)
++
T Consensus 195 ~~ 196 (342)
T TIGR00797 195 KK 196 (342)
T ss_pred Hh
Confidence 54
No 14
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.83 E-value=6.8e-21 Score=138.02 Aligned_cols=127 Identities=24% Similarity=0.414 Sum_probs=122.7
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++..+...+..|++.|.++++||++|++|+||+++..+.++.++.+++++++++...+++++..+|++|+|+.+.+.+|+
T Consensus 36 ~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~ 115 (162)
T PF01554_consen 36 SIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYL 115 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHH
T ss_pred HHHHHHhhhcccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccc
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHH
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYV 128 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~ 128 (190)
++..++.++.+......+++||.||++.+++.++.+.|++++|++|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 116 RIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp CCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999999999988999999985
No 15
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.76 E-value=1.1e-16 Score=135.26 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=137.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607 10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA 85 (190)
Q Consensus 10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~ 85 (190)
+..+++.+..|.+|+++|+||+||+++..+++......++++.+..+..+++++.++|.+ |+|..+.+..++++++
T Consensus 275 ~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~ 354 (502)
T TIGR01695 275 FGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYG 354 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999875 6788888999999999
Q ss_pred HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
+..++.+.+.++.+.+++.||++.+++.++.+ .++++|+++++... +|..|+|+++.+++.+..++..++.+|+
T Consensus 355 ~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 355 LGLIFYSLQKVLLRAFYARKDTRTPFINSVIS-VVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHhhHhccCCccCHHHHHHH-HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998 57899999988754 5899999999999999988877766654
No 16
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.76 E-value=4.3e-19 Score=148.48 Aligned_cols=177 Identities=42% Similarity=0.681 Sum_probs=166.4
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++....++++.|++.|+++++++.+|+||++++|.....+...++.++...+...+..++++..+|++|+|+.+...+..
T Consensus 292 ~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~ 371 (473)
T KOG1347|consen 292 EIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLT 371 (473)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
++++.+.++++.+.+..|..+|.|.++...++++..++++++|+..++.+..++|..|+|.++..+..+..........+
T Consensus 372 pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~ 451 (473)
T KOG1347|consen 372 PLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTAR 451 (473)
T ss_pred HHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999999999999999899999999999999977777777777888
Q ss_pred cchHHHHHHHHHHhhhH
Q 029607 162 TNWNAEVTSWFYELCYV 178 (190)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ 178 (190)
.+|++..++.+++....
T Consensus 452 tdW~~~~~~a~~~~~~~ 468 (473)
T KOG1347|consen 452 TDWKNQAEKAFARIIAS 468 (473)
T ss_pred ccHHHHHHHHHHHHHhh
Confidence 99999998887765443
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=4.8e-16 Score=130.90 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=136.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHH
Q 029607 6 WDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLA 85 (190)
Q Consensus 6 ~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~ 85 (190)
+...+..+++.+..|.++++.|+||+|++++..++++..+..++++.+..+..+++++..+|.++++ +..++++.+
T Consensus 283 ~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~ 358 (488)
T TIGR02900 283 FPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLA 358 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHH
Confidence 3344567889999999999999999999999999999999999999999999999999999987666 678899999
Q ss_pred HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
+..++...+....+++++.||+|.+++.++.+ .++++++++.+...+.+|+.|+|+++.+++.+..++..+..+|
T Consensus 359 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 359 PSFPFLYFSAPLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5889999998876567899999999999999998888777765
No 18
>PRK15099 O-antigen translocase; Provisional
Probab=99.54 E-value=3.5e-13 Score=111.76 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=117.1
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHH
Q 029607 11 KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFL 90 (190)
Q Consensus 11 ~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~ 90 (190)
..|++.+.+..++|+ ++|+|++++..+.++..+...+++++.+.+.+.+++..++.+||| ...++.+..+..++
T Consensus 55 ~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~ 128 (416)
T PRK15099 55 GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD----YQGVVRAVALIQMG 128 (416)
T ss_pred cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHH
Confidence 566667778889988 788999999999999999999999999999999999998888776 34566677777777
Q ss_pred HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
........+.+||.||++.++..++.+. ++++.+ +++.+.. .|+.|+.+++.+++.+..+...+++.+
T Consensus 129 ~~~~~~~~~~lr~~~~~~~~~~~~~~~~-~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 129 IAWANLLLAILKGFRDAAGNALSLIVGS-LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999984 677666 4444333 399999999999999887766655544
No 19
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.51 E-value=1.7e-12 Score=109.31 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHH
Q 029607 12 LGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLN 91 (190)
Q Consensus 12 ~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~ 91 (190)
.|++.+....+|++.|++|+|++++..+++...++..+++.+.+.+.+.+++.+.+.+|++. ..++++..+..++.
T Consensus 54 ~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~ 129 (488)
T TIGR02900 54 GGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFI 129 (488)
T ss_pred CCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999998887777763 35678888999999
Q ss_pred hHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 92 GIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK-----TNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 92 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
.+....++++||.+|.+..+..+.++. +++++....+... .+.++.|..+++.++..+..+....+++++
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 130 ALSSVLKGYFQGISNMKPPAYIQVIEQ-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred HHHHHHHHHHhhhccchHhHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999884 5666554444332 234566777888888888777765555443
No 20
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.50 E-value=7.1e-12 Score=105.14 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607 10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA 85 (190)
Q Consensus 10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~ 85 (190)
+..++++..-|..++...+||.++.++..++++.....+.++.++.+..+++++.++..+ |+|-.+.....+++++
T Consensus 250 ~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~ 329 (451)
T PF03023_consen 250 FAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYA 329 (451)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 455777888899999999999999999999999999999999999999999999887752 7777888999999999
Q ss_pred HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
++.++.+.+.++...+.+.||+|.|++.+..+ .++++.+++++... +|..|+.+++.++.++..++.+.+++|+
T Consensus 330 ~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 330 LGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 68999999777765 5999999999999999998887777665
No 21
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.38 E-value=6.2e-11 Score=100.33 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=107.8
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHhhccC--CcHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 029607 21 RVSNELGAAHP-RVAKFSVFVVNANSVFIS-VVFSAIVLIFRADLSKLFT--SNSEVVQAVSDLTPLLAISAFLNGIQPI 96 (190)
Q Consensus 21 ~is~~~G~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~lf~--~~~~v~~~~~~~l~i~~~~~~~~~~~~~ 96 (190)
.+++..|+++. |++++....+.......+ ++...+.+.+++++.+++. .|+|..+.+.+|+++..++.++..+..+
T Consensus 63 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 142 (502)
T TIGR01695 63 FVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAV 142 (502)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444 688887777766665444 4457788889999999883 4788889999999999999999999999
Q ss_pred HHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHH--HHHHHHHHHHHHHHHHHHhh
Q 029607 97 LSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIW--WGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 97 ~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~ 161 (190)
.++++|+.||.+.+++.+++.+ +..+.. ......++|..|+. +++.++..+..+..+.++++
T Consensus 143 ~~~~l~~~~~~~~~~~~~i~~~-i~~i~~--~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 206 (502)
T TIGR01695 143 FGGILNARKRFFIPSFSPILFN-IGVILS--LLFFDWNYGQYSLALAIGVLIGGVAQLLIQLPFLRK 206 (502)
T ss_pred HHHHHhccCeeHHHHHHHHHHH-HHHHHH--HHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 444443 23334578999988 99999999888777665554
No 22
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.37 E-value=1.5e-10 Score=97.58 Aligned_cols=150 Identities=11% Similarity=0.058 Sum_probs=132.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHH
Q 029607 10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLA 85 (190)
Q Consensus 10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~ 85 (190)
+..++++..-|..|++..++|.++.++..++++..+.+++++.+..+.++++|+.++..+ +++-.+.+.+.+..++
T Consensus 284 fgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~ 363 (518)
T COG0728 284 FGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYS 363 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 456777788899999999999999999999999999999999999999999999877743 5666778899999999
Q ss_pred HHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 86 ISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
.+.++.+..-++...+++.+|+|.|+++++++ .++++.+++.+.. .+|..|+..++.++.++...+.++..+|+
T Consensus 364 ~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~-~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 364 LGLIPFALVKLLSRVFYAREDTKTPMKIAIIS-LVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HhhHHHHHHHHHHHHHHHccCCCcChHHHHHH-HHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 6899999955554 45788899999998888887776666553
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=99.30 E-value=3.9e-10 Score=93.60 Aligned_cols=145 Identities=11% Similarity=-0.047 Sum_probs=120.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcH--HHHHHHHhHHHH
Q 029607 6 WDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNS--EVVQAVSDLTPL 83 (190)
Q Consensus 6 ~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~--~v~~~~~~~l~i 83 (190)
+...+..+++++..|.++++ +|+||.++..++.......++++.++..+.+++++.++|.+|+ + +.+++++
T Consensus 264 ~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~~~~----~~~~~~~ 336 (416)
T PRK15099 264 YLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNKFTA----MRDLFAW 336 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH----HHHHHHH
Confidence 44788899999999999995 6789999999999999999999999999999999999998755 3 5667788
Q ss_pred HHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607 84 LAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV 160 (190)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 160 (190)
..+..++...+......+-+.++++......+.. .++++|+++++... +|..|+++++++++.+...+......
T Consensus 337 l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 337 QLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666666666777777777777766 68899999988765 49999999999999999987765554
No 24
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.27 E-value=2.6e-10 Score=95.93 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=142.4
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHH
Q 029607 7 DINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAI 86 (190)
Q Consensus 7 ~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~ 86 (190)
.+.+..|++.+..++.+|++|+++++.......++...-...+++.. .++.+.+++...+++|||+.+.+..|.+...+
T Consensus 77 ~~s~~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~-~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip 155 (473)
T KOG1347|consen 77 GVSILLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPIS-LLILNSEPILLLLGQDPDISRDAGSYAFMLIP 155 (473)
T ss_pred chHHhhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHccHHHHHHhCCChhHHHHHhhhHhhhcc
Confidence 46678899999999999999999999999999999999888888755 66777799999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 87 SAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
..+.+.....+..++|+.++.....+..... .+++++++|++.+..++|..|...+..++++........+....
T Consensus 156 ~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 156 GLFSYAVSFPLAKFLQAQSITLPLLVIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred hhhhhHHHHHHHHHHHhccCchHHHHHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999 69999999999999999999999999999999998877776543
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.19 E-value=6e-09 Score=87.57 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC--cHHHHHHHHhHHHHHHHHHHH
Q 029607 13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS--NSEVVQAVSDLTPLLAISAFL 90 (190)
Q Consensus 13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~~v~~~~~~~l~i~~~~~~~ 90 (190)
++..+..|.-.+.. ++++|+.++..+..+....++++.++++.+++++++.+++.+ |+|..+.+.+.+++..+..++
T Consensus 32 al~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~ 110 (451)
T PF03023_consen 32 ALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILF 110 (451)
T ss_pred HHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 57788889999998 899999999999999999999999999999999999999954 899999999999999999999
Q ss_pred HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCC---chhHHHHHHHHHHHHHHHHHHHHhhcc
Q 029607 91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIG---VVGIWWGMITGVLLQTITLNILTVRTN 163 (190)
Q Consensus 91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g---~~g~~~a~~i~~~~~~~~~~~~~~~~~ 163 (190)
.+...++.+++|+.+|...|....+..+ +..+....+.. ...| +.++.+|..++..+..+..+...+|..
T Consensus 111 ~~l~~i~~a~L~~~~~F~~~~~~~l~~N-~~~I~~~~~~~--~~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~ 183 (451)
T PF03023_consen 111 IGLSSIFSAILNAHRRFLIPALSPLLFN-LSIILSLLLLS--NSWGQENIYALAWGVLIGAIIQFLIQLPYLRRFG 183 (451)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHH-HHHHHHHHHHH--HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999988875 33333333332 2345 888999999999999888887777643
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=99.09 E-value=3.4e-08 Score=83.61 Aligned_cols=141 Identities=12% Similarity=0.177 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhH
Q 029607 14 LSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGI 93 (190)
Q Consensus 14 l~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~ 93 (190)
++...-|..++. ++|.++.++..++.......++++++..+..+++++..++.+|+ .+.+...++++++...+...
T Consensus 264 i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~ 339 (492)
T PRK10459 264 ITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSV 339 (492)
T ss_pred HHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHH
Confidence 445556777775 67889999999999999999999999999999999987775543 24477899999999999999
Q ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 94 QPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 94 ~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
.......+++.||+|.+++.+++. .++.+|..+.+.. .+|+.|+.+++.+++.+......++..|
T Consensus 340 ~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 340 GNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888 4777887766654 4599999999999999887777766633
No 27
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.06 E-value=4.1e-08 Score=82.82 Aligned_cols=137 Identities=12% Similarity=0.122 Sum_probs=120.4
Q ss_pred chhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 3 YLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 3 i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
+......+..+++...-|.+++...++|.++.++..+++......++++..+....+++++..++..++... +...+.
T Consensus 258 i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~--~~~~l~ 335 (480)
T COG2244 258 LVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYAS--AAPILQ 335 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccc--hhHHHH
Confidence 345566778899999999999999999999999999999999999999999999999999988776644322 788899
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHH
Q 029607 83 LLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGM 144 (190)
Q Consensus 83 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~ 144 (190)
++++..++..........+++.|+++..++.+.++ .+.++.+++++.... |..|...++
T Consensus 336 il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~li~~~--g~~g~~~a~ 394 (480)
T COG2244 336 LLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLLIPRF--GLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHHHHhh--hhhhHHHHH
Confidence 99999999999999999999999999999999999 588888888887644 778888887
No 28
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.02 E-value=2.8e-09 Score=85.86 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=77.8
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++.++...++.+++.+..|.+++++|+||.|++++..++++.....++++.+..+.++++++.++|++|||+.+.+..++
T Consensus 259 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~ 338 (342)
T TIGR00797 259 NVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYL 338 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 029607 82 PLL 84 (190)
Q Consensus 82 ~i~ 84 (190)
++.
T Consensus 339 ~~~ 341 (342)
T TIGR00797 339 IFV 341 (342)
T ss_pred HHh
Confidence 764
No 29
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=4.9e-06 Score=58.92 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607 81 TPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV 160 (190)
Q Consensus 81 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 160 (190)
++++++..++.+.+......+++.||++..++.+..+ .+++++.++.+.. ++|..|+.+++.+++........+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999 6999999999954 569999999999999999888877776
Q ss_pred hc
Q 029607 161 RT 162 (190)
Q Consensus 161 ~~ 162 (190)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 64
No 30
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.29 E-value=7.3e-05 Score=63.56 Aligned_cols=149 Identities=14% Similarity=0.149 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh-hccCC--cHHHHHHHHhHHHHHHHHHH
Q 029607 13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLS-KLFTS--NSEVVQAVSDLTPLLAISAF 89 (190)
Q Consensus 13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~lf~~--~~~v~~~~~~~l~i~~~~~~ 89 (190)
+++++..|.-.++..++..|++++..+........+.+.+.++..++++++. .++.. |++....+....++..++.+
T Consensus 65 afs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~ 144 (518)
T COG0728 65 AFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLL 144 (518)
T ss_pred hHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHH
Confidence 4678888999999988878888888888886777788888888899999988 55544 34544478889999999999
Q ss_pred HHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhhc
Q 029607 90 LNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVRT 162 (190)
Q Consensus 90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 162 (190)
+.++.....+++++.++...|...-+.-+ +.-+.....+....+....+..++..++-.+..+..+..++|.
T Consensus 145 ~isL~al~~aiLNs~~~F~~~a~aPvl~N-v~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 145 FISLSALFGAILNSRNRFFIPAFAPVLLN-VSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred HHHHHHHHHHHHhccCeechhhhhHHHHH-HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999888875 3333233333333332355778888899988888888887764
No 31
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.12 E-value=0.0016 Score=49.70 Aligned_cols=131 Identities=14% Similarity=0.199 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHH
Q 029607 16 AAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQP 95 (190)
Q Consensus 16 ~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~ 95 (190)
.|....+.+. .++++++.++..+.......+.+++...+...... ++ ++++ ...++....+..++.....
T Consensus 39 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~ 108 (251)
T PF13440_consen 39 LGLRQSLVRS-AARDKQDIRSLLRFSLLVSLLLAVILAILAILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQ 108 (251)
T ss_pred HHHHHHHHHh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHH
Confidence 3344444443 34667777777777776666666554443333222 33 5555 4456677778888899999
Q ss_pred HHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 029607 96 ILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNIL 158 (190)
Q Consensus 96 ~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~ 158 (190)
...+.+++.+|.+.....+.... +........+. ..+.+..+..++..++..+..+.....
T Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (251)
T PF13440_consen 109 LFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLL-YLGLNLWSILLAFIISALLALLISFYL 169 (251)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998885 44433333333 333488889999888888776655543
No 32
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.02 E-value=0.0012 Score=50.96 Aligned_cols=138 Identities=20% Similarity=0.220 Sum_probs=82.2
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHH
Q 029607 11 KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFL 90 (190)
Q Consensus 11 ~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~ 90 (190)
..|++.+....++++..+ .++.++..........+.+++......... .+.+ ++.. ..+........++
T Consensus 53 ~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~~~~---~~~~~~~~~~~~~ 121 (273)
T PF01943_consen 53 DLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLILLIAS-----FFGN-PSLS---LILIILALLILIL 121 (273)
T ss_pred hhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCC-chHH---HHHHHHHHHHHHH
Confidence 456666666666655432 344444444444444444433333333222 3333 3321 2222222222357
Q ss_pred HhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 91 NGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 91 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
........+++++.++.+.....++... +........+... +.+..+...+..++..+..+......++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 122 SSLSSVFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999998885 5555555444443 3358889999999998887777766654
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=97.82 E-value=0.00089 Score=56.80 Aligned_cols=114 Identities=13% Similarity=0.195 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHH
Q 029607 36 FSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNL 115 (190)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 115 (190)
+............++++..+.+.+.+++..+|. ||+ ....+++.++..++.++.....+.+++..|.+.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPE----LAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chh----hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 445566677777787777788888888887664 455 345677788888888888889999999999999888888
Q ss_pred HHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 029607 116 ACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLN 156 (190)
Q Consensus 116 ~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~ 156 (190)
... +........+.. .+.|..+..++..++..+..+...
T Consensus 150 ~~~-i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~ 188 (492)
T PRK10459 150 SAV-VAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFG 188 (492)
T ss_pred HHH-HHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHH
Confidence 874 455555544443 467899999999988887766543
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.59 E-value=0.0023 Score=55.29 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC----cHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcc
Q 029607 32 RVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS----NSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQ 107 (190)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 107 (190)
+++.+.+...+.....++++...+.....+.+.++... |++ +.+.++.++...|+.++|-++.+++++..++
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~----~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~ 414 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTS----APSLLRAYCYYIPFLAINGITEAFVFSVASE 414 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCC----chHHHHHHHHHHHHHHHccHHHHHHHHhCCH
Confidence 55777788888888888887777777777777777753 455 6888999999999999999999999999998
Q ss_pred hHHHHHHHHH--HHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 108 AIVAYVNLAC--YYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 108 ~~~~~~~~~~--~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
+-....+-.. ..++.+..+|++... ++|..|.-+|..+.+.++.+....++++
T Consensus 415 ~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 415 SQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766555332 235566678888876 7899999999999999998887777654
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.17 E-value=0.025 Score=47.75 Aligned_cols=95 Identities=15% Similarity=0.210 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHH
Q 029607 11 KLGLSAAASVRVSNELGAAHPRVAKFS-VFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAF 89 (190)
Q Consensus 11 ~~gl~~a~~~~is~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~ 89 (190)
..|+..+....++++..+++++..+.. ...+.......+.+........... |++ ....+.......+
T Consensus 60 ~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~ 128 (480)
T COG2244 60 DFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI-------DPV----LALLLRILSLALL 128 (480)
T ss_pred HcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------Chh----hHHHHHHHHHHHH
Confidence 378888888889988877777777776 6666666665555544444333333 444 5667788889999
Q ss_pred HHhHHHHHHHHHhccCcchHHHHHHHH
Q 029607 90 LNGIQPILSGVAIGSGWQAIVAYVNLA 116 (190)
Q Consensus 90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~ 116 (190)
.........+.+|+.++.+........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (480)
T COG2244 129 LLPLSSVLRGLFQGFGRFGPLALSIVS 155 (480)
T ss_pred HHHHHHHHHHHHHHHhhcccchhHHHH
Confidence 999999999999999999999998433
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.019 Score=47.98 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHH
Q 029607 13 GLSAAASVRVSNELGAAHPRVAKFSVFV---VNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAF 89 (190)
Q Consensus 13 gl~~a~~~~is~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~ 89 (190)
-+-...-..-+|-+-.++.|+.|+.... .+.....+|+....+...-++.+..+++.+.=...-....+++++.+.+
T Consensus 297 PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~ 376 (530)
T KOG2864|consen 297 PIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIP 376 (530)
T ss_pred hhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHH
Confidence 3444455556676666666666655544 4455555555555555555566777776432222226788999999999
Q ss_pred HHhHHHHHHHHHhccCcchHHHHHHHH--HHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 029607 90 LNGIQPILSGVAIGSGWQAIVAYVNLA--CYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTV 160 (190)
Q Consensus 90 ~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 160 (190)
+.+.|-+..++..+.++..-.-..+-+ ...+..+..+|++..+. |..|.-.|..+.+.+.-.....+++
T Consensus 377 ~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 377 FLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887665544421 12466788999999876 6799999999998887666554544
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.42 E-value=0.21 Score=40.07 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH-hhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 029607 22 VSNELGAAHPRVAKFSVFVVNANSVFISVV-FSAIVLIFRADL-SKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSG 99 (190)
Q Consensus 22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~ 99 (190)
++-.++.++.+|-+-....+ ..+.+..++ ..+..--+++.+ -++|.-||++.+.+...+.++.+..++++.....+|
T Consensus 72 igl~~V~s~rsrr~~vl~~~-vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qG 150 (345)
T PF07260_consen 72 IGLVFVNSKRSRRKAVLCMA-VAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQG 150 (345)
T ss_pred HHHHHhcchhhhHHHHHHHH-HHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666665544444433 222222222 222222333433 578888999999999999999999999999999999
Q ss_pred HHhccCcchHHHHHHHHHHHHhHhHHHHHHH
Q 029607 100 VAIGSGWQAIVAYVNLACYYIIDLPIAYVRG 130 (190)
Q Consensus 100 ~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~ 130 (190)
++-=..++......++.. .+..+.....+.
T Consensus 151 ILik~r~s~iV~~aSI~~-v~~qvV~v~~ll 180 (345)
T PF07260_consen 151 ILIKHRHSWIVGSASIAD-VIAQVVLVAILL 180 (345)
T ss_pred HhhhccceeEeehHHHHH-HHHHHHHHHHHH
Confidence 988555555555555554 333333333333
No 38
>COG4267 Predicted membrane protein [Function unknown]
Probab=92.15 E-value=6 Score=32.84 Aligned_cols=136 Identities=15% Similarity=0.068 Sum_probs=92.4
Q ss_pred hhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHH
Q 029607 9 NAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISA 88 (190)
Q Consensus 9 ~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~ 88 (190)
.+.-|++...+-.+|..+=++|++++.....-+.......+...+.++++ .++|+.. .|--......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~si-----~yk~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQYSI-----VYKILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCchhH-----HHHHHHHHHH
Confidence 35567777777888888888888888877766666655555554432111 1223322 2222333455
Q ss_pred HHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 89 FLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 89 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
+..+...+...++.|+.|-+......+.+ .++.+.+++++-. .++.|..++.-++..........+..|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56666777888999999999999998888 4666776665554 488999999999998887776666554
No 39
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=63.62 E-value=32 Score=27.88 Aligned_cols=14 Identities=21% Similarity=0.479 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhcch
Q 029607 151 QTITLNILTVRTNW 164 (190)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (190)
.+++.+++++|++|
T Consensus 302 ~~~~~~~~f~rk~W 315 (316)
T PRK11085 302 AGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHccc
Confidence 34445667777777
No 40
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=63.55 E-value=12 Score=28.40 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=30.4
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029607 7 DINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIV 56 (190)
Q Consensus 7 ~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (190)
......++|.+.++++|+.+|+++..-.++....+....++.+.+++.++
T Consensus 118 ~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~ 167 (216)
T COG0170 118 AGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVL 167 (216)
T ss_pred HHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHH
Confidence 34467899999999999999986333333333334444444444444433
No 41
>PRK09546 zntB zinc transporter; Reviewed
Probab=55.38 E-value=51 Score=26.55 Aligned_cols=49 Identities=14% Similarity=0.321 Sum_probs=24.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHhcCCC---ch------hHHHHHHHHHHHHHHHHHHHHhhcch
Q 029607 112 YVNLACYYIIDLPIAYVRGFKTNIG---VV------GIWWGMITGVLLQTITLNILTVRTNW 164 (190)
Q Consensus 112 ~~~~~~~~v~~i~~~~~l~~~~~~g---~~------g~~~a~~i~~~~~~~~~~~~~~~~~~ 164 (190)
+.++++ ++.+|+..+-..+ +|+ ++ |.|+...+ .++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiy-GMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLF-GVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhh-ccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 444554 3445666554432 332 22 44433333 33344455667777777
No 42
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=53.33 E-value=72 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 029607 32 RVAKFSVFVVNANSVFISVVFSAIVLIFRAD 62 (190)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (190)
|+.|+..+. ...+..++.....+...+..+
T Consensus 2 k~~k~~i~~-~~iGi~ig~~i~li~~~~~~~ 31 (136)
T PF11457_consen 2 KIIKKIIKG-FLIGIGIGSFISLIISLFYGQ 31 (136)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 344555544 345555555555555554444
No 43
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=52.44 E-value=68 Score=25.58 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHHhHhHHHHHHHH-hcCCC-ch------hHHHHHHHHHHHHHHHHHHHHhhcch
Q 029607 106 WQAIVAYVNLACYYIIDLPIAYVRGF-KTNIG-VV------GIWWGMITGVLLQTITLNILTVRTNW 164 (190)
Q Consensus 106 ~~~~~~~~~~~~~~v~~i~~~~~l~~-~~~~g-~~------g~~~a~~i~~~~~~~~~~~~~~~~~~ 164 (190)
..+..-..++++ ++..|+..+-.. +.+.+ ++ |.++...+. ++.+++.+++++|++|
T Consensus 254 ~N~~mk~LTvvt--~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m-~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 254 MNEIMKILTVVS--TIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVM-AVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 334444555555 344555544433 22221 22 333333333 3334456677777777
No 44
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=49.04 E-value=1.2e+02 Score=23.11 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=30.1
Q ss_pred hHHHhhhhHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHH
Q 029607 5 NWDINAKLGLSAAASVRVSNELGAA-HPRVAKFSVFVVNANSVFISVVFS 53 (190)
Q Consensus 5 ~~~~~~~~gl~~a~~~~is~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~ 53 (190)
.+......+.+++.+.++|+.+|++ .++--.+....+...+++.+.+.+
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~ 181 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIIS 181 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHH
Confidence 3455677899999999999999999 222222223344444444444433
No 45
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=47.70 E-value=70 Score=20.21 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 029607 19 SVRVSNELGAAHPRVAKFSVFVVNANSVFIS 49 (190)
Q Consensus 19 ~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~ 49 (190)
+..+-..+-+||+|+|++.-+.+-.++.+-.
T Consensus 41 s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~ 71 (82)
T PF04505_consen 41 SSKVRSRYAAGDYEGARRASRKAKKWSIIAI 71 (82)
T ss_pred chhhHHHHHCCCHHHHHHHHHHhHHHHHHHH
Confidence 3456677779999999999888877764433
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=46.78 E-value=1.7e+02 Score=24.29 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh
Q 029607 30 HPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSK 65 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 65 (190)
+.++.+++.+.+..-+.........+.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999988888888888876
No 47
>PF14184 YrvL: Regulatory protein YrvL
Probab=46.03 E-value=1e+02 Score=21.54 Aligned_cols=111 Identities=8% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhccCC-cHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHH
Q 029607 40 VVNANSVFISVVFSAIVLIFRADLSKLFTS-NSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACY 118 (190)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 118 (190)
......+.+..+++. ..+...-+.++++- -+.......-.+-....+.+++.+..++.-.+.-.+-++.... .-.
T Consensus 6 ~~i~~~l~~~~v~a~-~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~---~l~ 81 (132)
T PF14184_consen 6 IFIIIALLLIIVFAI-YFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI---LLA 81 (132)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH---HHH
Confidence 334444444444443 44445566777774 3444555555555566688888777766555555533333332 222
Q ss_pred HHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 029607 119 YIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTIT 154 (190)
Q Consensus 119 ~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~ 154 (190)
..+.....+...+..|.=+++++..+.....+..+.
T Consensus 82 ~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~ 117 (132)
T PF14184_consen 82 FIIDFLFTWITIYTADELMESISISTLSEIIFALLF 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHH
Confidence 456677777777776655778888776666555443
No 48
>PF14936 p53-inducible11: Tumour protein p53-inducible protein 11
Probab=45.73 E-value=1.2e+02 Score=22.26 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=42.0
Q ss_pred HHHHHHhcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 029607 20 VRVSNELGAAHPR--VAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPIL 97 (190)
Q Consensus 20 ~~is~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~ 97 (190)
..|||-+|.+..= |-..-.+.--..+...-..+++...+||+++.+...+++.. .+....|.+.-+.. ++.-++
T Consensus 33 SKISQlLGne~k~~vr~P~GLr~Wq~~sa~~f~~~~~m~L~FP~~~~~~vf~~~~~--~s~~~vRlyGgAL~--s~aLi~ 108 (179)
T PF14936_consen 33 SKISQLLGNEIKFAVREPRGLRLWQFLSAVYFTLVALMALVFPDQLYDHVFEEEPV--TSKLPVRLYGGALL--SIALIF 108 (179)
T ss_pred HHHHHHhcccceeeecCCCchhHHHHHHHHHHHHHHHHHHHccHHHHHhhcccccc--cceeeehhhhHHHH--HHHHHH
Confidence 5688888866431 11122222223344444457888899999987666553332 23344444443333 333334
Q ss_pred HHHHhccC
Q 029607 98 SGVAIGSG 105 (190)
Q Consensus 98 ~~~l~~~g 105 (190)
-+.++...
T Consensus 109 w~~l~t~e 116 (179)
T PF14936_consen 109 WNALYTAE 116 (179)
T ss_pred HHHHhHHH
Confidence 44444443
No 49
>PRK10739 putative antibiotic transporter; Provisional
Probab=43.31 E-value=1.4e+02 Score=22.38 Aligned_cols=63 Identities=8% Similarity=0.060 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHH
Q 029607 17 AASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPL 83 (190)
Q Consensus 17 a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i 83 (190)
+..|..-..-...++++-|+..++....++. ..+++.++++++.+.|+-+.+..+.+...+..
T Consensus 19 g~ipiflslt~~~~~~~r~~ia~~a~~~a~~----ill~f~~~G~~iL~~fGIsl~afrIAGGilL~ 81 (197)
T PRK10739 19 GNLPIFMSVLKHLEPKRRRAIMIRELLIALL----VMLVFLFAGEKILAFLNLRTETVSISGGIILF 81 (197)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3344444444455566666666665554443 44477788999999999877766666554433
No 50
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=36.63 E-value=2.6e+02 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 029607 11 KLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVV 51 (190)
Q Consensus 11 ~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 51 (190)
.+|.+....+++.+ + ++|.+++||....+..+.+++-+.
T Consensus 193 SFgfh~iIpsl~~y-~-~~~~~~~~k~i~~Gs~i~li~yl~ 231 (403)
T PRK15132 193 SFGFHGSVPSIVSY-M-GGNIRKLRWVFIIGSAIPLVAYIF 231 (403)
T ss_pred HhhCCcccHHHHHH-h-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455554 4 678888988887776665554443
No 51
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=36.00 E-value=2.2e+02 Score=22.48 Aligned_cols=93 Identities=14% Similarity=-0.042 Sum_probs=55.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHhccCcchH
Q 029607 30 HPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGVAIGSGWQAI 109 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 109 (190)
..+.++|++-.+..++.+.++.=++..+.+++ ..+|.+|.+.........+...-..+......++.- -....+.+.
T Consensus 110 s~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~~~s~~f~~vY~~I~~L-~~~r~r~~L 186 (261)
T PF10160_consen 110 SRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWFISSLVFALVYGFILIL-TPLRWRDRL 186 (261)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHHHHHHHHHHHHHHHHHH-HhccccccC
Confidence 45666666666666666667776777777776 667777777777766666655544444333333322 555566666
Q ss_pred HHHHHHHHHHHhHhHH
Q 029607 110 VAYVNLACYYIIDLPI 125 (190)
Q Consensus 110 ~~~~~~~~~~v~~i~~ 125 (190)
|..-++-.+..+...+
T Consensus 187 Par~SFY~Y~~~L~~L 202 (261)
T PF10160_consen 187 PARPSFYRYVGILFLL 202 (261)
T ss_pred CCCccHHHHHHHHHHH
Confidence 6655555543333333
No 52
>PRK10484 putative transporter; Provisional
Probab=35.34 E-value=3e+02 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 029607 19 SVRVSNELGAAHPRVAKFSVFVVNANSV 46 (190)
Q Consensus 19 ~~~is~~~G~~~~~~~~~~~~~~~~~~~ 46 (190)
+..+-+.+.+||.+++|+....+....+
T Consensus 261 q~~~qR~~aak~~k~a~~~~~~~~~~~~ 288 (523)
T PRK10484 261 QSIVQRALGAKNLAEGQKGALLAAFFKL 288 (523)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4567788899999999998766544433
No 53
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=33.62 E-value=2.7e+02 Score=22.80 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhHHHhhccCCc-----H--H-HHHHHH
Q 029607 14 LSAAASVRVSNELGAAHPRVAKFSVFVV-------NANSVFISVVFSAIVLIFRADLSKLFTSN-----S--E-VVQAVS 78 (190)
Q Consensus 14 l~~a~~~~is~~~G~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~lf~~~-----~--~-v~~~~~ 78 (190)
+.......++.++|++|..++---+--. .+.-...++.+++..+..++-+.+=-+++ | . ..|..
T Consensus 177 l~i~sa~~~aF~hGaNdvanaiGpi~~~~~~~~~~~~v~~~g~~~i~lG~~~~g~Rvi~TvG~kIt~L~p~~gfsA~~~- 255 (326)
T COG0306 177 LLIISASLVAFAHGANDVANAIGPLVAVLISSLPPFWVLVLGGIALALGTLTGGPRVIETVGKKITELTPSRGFSAQLS- 255 (326)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhHHHHHhhccccHHHHHHHHHHHHHHHHHccHHHHHHHhhhhcccCcchhHHHHHH-
Confidence 3455667888889999887765554443 34445555666666677677666544432 1 1 11111
Q ss_pred hHHHHH---HHHHHHHhHHHHHHHHHhccC------cchHHHHHHHHHHHHhHhHHHHHHHHh
Q 029607 79 DLTPLL---AISAFLNGIQPILSGVAIGSG------WQAIVAYVNLACYYIIDLPIAYVRGFK 132 (190)
Q Consensus 79 ~~l~i~---~~~~~~~~~~~~~~~~l~~~g------~~~~~~~~~~~~~~v~~i~~~~~l~~~ 132 (190)
..+-+. .++.|... ..++.+-.-|.| ..+....-+++..|++.+|.+..+.+.
T Consensus 256 sa~~v~~as~~GlPvSt-T~~~vgaI~GvG~~~~~~~v~~~~~~~Iv~aWvvT~p~a~~ls~~ 317 (326)
T COG0306 256 SAITVLLASLLGLPVST-THTLVGAVLGVGLALAGGAVNWKVIKNIVLAWVVTLPAAALLSAL 317 (326)
T ss_pred HHHHHHHHHHcCCCccc-ceeeeeeeeecchhhccCceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 12333333 333444444555 255666666666689888888777654
No 54
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=32.81 E-value=66 Score=24.82 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=43.4
Q ss_pred HhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 029607 8 INAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRA 61 (190)
Q Consensus 8 ~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (190)
.......+.+....+|+.+|.-+++-+|+.-..+.+..+..+++++...+-.-.
T Consensus 161 s~~LlswcDt~AdtvGRKfG~~tpk~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 161 SISLLSWCDTIADTVGRKFGSTTPKYAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHHHHHhhhHHHHHhhhccccCCCcCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 334566778999999999999999999988888888888888887776654433
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=32.39 E-value=2.1e+02 Score=23.98 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=49.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHH
Q 029607 6 WDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLA 85 (190)
Q Consensus 6 ~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~ 85 (190)
+..++....+.++++.++..-|---.+-....+..++...++..++..++++.+-..+.++|..+..+.......-+.=+
T Consensus 5 l~l~~ll~agi~~g~~~~~qqgyVlI~~~~~~ie~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra 84 (400)
T COG3071 5 LLLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEMSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRA 84 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEecceeeeeeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44556677788888888887766555555555666665555555555555555555666666666665555544433333
No 56
>PF08837 DUF1810: Protein of unknown function (DUF1810); InterPro: IPR014937 This is a family of uncharacterised proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure. ; PDB: 2JEK_A.
Probab=32.03 E-value=1.9e+02 Score=20.50 Aligned_cols=90 Identities=11% Similarity=0.040 Sum_probs=52.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 029607 21 RVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGV 100 (190)
Q Consensus 21 ~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~ 100 (190)
-.++.+|-++.++|+.++.+-+.-.=..-.. ..+.-.-......+|+. |+..+.-+.........---..+..++..+
T Consensus 48 ~~a~~Y~I~sl~EA~AYL~HpvLG~RL~e~~-~~ll~~~~~s~~~IfG~-~D~~Kl~SsmTLF~~~a~~~~~F~~~L~~~ 125 (139)
T PF08837_consen 48 PTARRYAIASLDEARAYLAHPVLGPRLRECT-EALLALEGRSAEEIFGS-PDALKLRSSMTLFAAAAPDEPVFRQVLDKY 125 (139)
T ss_dssp HHHHHTSB-SHHHHHHHHHSTTHHHHHHHHH-HHHHH--S--HHHHS-T-THHHHHHHHHHHHHHH-S--HHHHHHHHHH
T ss_pred hHHHHhccCCHHHHHHHHcCHHHHHHHHHHH-HHHHhcCCCCHHHHCCC-hhHHHHHhHHHHHHHhcCCcchHHHHHHHH
Confidence 3578999999999999998887666555543 33444456788899986 554444333333333333356777889999
Q ss_pred HhccCcchHHHH
Q 029607 101 AIGSGWQAIVAY 112 (190)
Q Consensus 101 l~~~g~~~~~~~ 112 (190)
+.|..|.+..-.
T Consensus 126 f~G~~D~~Tl~~ 137 (139)
T PF08837_consen 126 FDGEPDERTLEL 137 (139)
T ss_dssp STT---HHHHHH
T ss_pred cCCCCCHHHHHh
Confidence 999888776543
No 57
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.39 E-value=2.9e+02 Score=22.24 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHH-HhcCCC-ch------hHHHHHHHHHHHHHHHHHHH
Q 029607 87 SAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRG-FKTNIG-VV------GIWWGMITGVLLQTITLNIL 158 (190)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~-~~~~~g-~~------g~~~a~~i~~~~~~~~~~~~ 158 (190)
.-....+.....+.. +.......-+.++++ .++ +|...+-. |+.+++ ++ |.|++....-++ +++.+++
T Consensus 240 ~~~l~~l~d~~~s~i-s~~~N~imk~LTi~s-~if-lPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~-~~~~~~~ 315 (322)
T COG0598 240 RERLSSLLDAYLSLI-NNNQNEIMKILTIVS-TIF-LPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLL-ALLLYLY 315 (322)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHH-HhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHH-HHHHHHH
Confidence 333444444444444 233334444445555 344 45444444 333322 22 556665555444 4455677
Q ss_pred Hhhcch
Q 029607 159 TVRTNW 164 (190)
Q Consensus 159 ~~~~~~ 164 (190)
++|++|
T Consensus 316 frrk~W 321 (322)
T COG0598 316 FRRKGW 321 (322)
T ss_pred HHhcCc
Confidence 777777
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.08 E-value=96 Score=21.38 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHH
Q 029607 138 VGIWWGMITGVLL 150 (190)
Q Consensus 138 ~g~~~a~~i~~~~ 150 (190)
.|+.+|..++-+.
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 3555555555443
No 59
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=29.78 E-value=1.8e+02 Score=19.67 Aligned_cols=50 Identities=8% Similarity=-0.028 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHH
Q 029607 35 KFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLL 84 (190)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~ 84 (190)
|+..+..+.++....+..+....+.|+.....++..+.......+..+.+
T Consensus 1 ~~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~ 50 (124)
T PF14248_consen 1 KRILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAY 50 (124)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHH
Confidence 34566677778888888888889999999888864221112234444543
No 60
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=28.76 E-value=1.3e+02 Score=21.75 Aligned_cols=32 Identities=13% Similarity=0.240 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcchHHH
Q 029607 136 GVVGIWWGMITGVLLQTITLNILTVRTNWNAE 167 (190)
Q Consensus 136 g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 167 (190)
|+.+...+..+..++.+++.++.+.+.-|++.
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi 43 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPI 43 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566666666777777777776666655543
No 61
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=26.45 E-value=2.6e+02 Score=20.47 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=29.1
Q ss_pred HHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 029607 119 YIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTITLNILTVR 161 (190)
Q Consensus 119 ~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 161 (190)
.++.....|++....++++..-++-..+..++++.+..+.++.
T Consensus 26 ~ivS~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYkN 68 (170)
T PF07074_consen 26 LIVSAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYKN 68 (170)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456667788888888888876777777776666655555543
No 62
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=26.30 E-value=4.1e+02 Score=22.66 Aligned_cols=29 Identities=3% Similarity=0.031 Sum_probs=19.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 029607 21 RVSNELGAAHPRVAKFSVFVVNANSVFIS 49 (190)
Q Consensus 21 ~is~~~G~~~~~~~~~~~~~~~~~~~~~~ 49 (190)
...+.+.+++.+++|+....+......+.
T Consensus 256 ~~qR~~aaks~~~a~~~~~~~~~~~~~~~ 284 (483)
T PRK09442 256 TAVRCMSYKDSKALHRGIIIGTIVVGFLM 284 (483)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999987666544333333
No 63
>TIGR02896 spore_III_AF stage III sporulation protein AF. This family represents the stage III sporulation protein AF of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of this protein is poorly conserved, so only the N-terminal region, which includes two predicted transmembrane domains, is included in the seed alignment.
Probab=26.27 E-value=2.1e+02 Score=19.18 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHhhHHHhhccCCcHHHHHHHHh
Q 029607 57 LIFRADLSKLFTSNSEVVQAVSD 79 (190)
Q Consensus 57 ~~~~~~i~~lf~~~~~v~~~~~~ 79 (190)
...-.|+.++|+.|+++......
T Consensus 43 ~~il~Pi~~l~~~~~~~~~~~~~ 65 (106)
T TIGR02896 43 VVILNPIIKLLTTDPNIDIYVFK 65 (106)
T ss_pred HHHHHHHHHHhCCChhHHHHHHh
Confidence 34457889999988876655433
No 64
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=25.16 E-value=1.4e+02 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=19.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 029607 29 AHPRVAKFSVFVVNANSVFISVVFSAI 55 (190)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (190)
++.+.++|.++.++++..+++++...+
T Consensus 23 ~r~k~~~R~i~l~~Ri~~~iSIisL~~ 49 (161)
T PHA02673 23 KRQKAIRRYIKLFFRLMAAIAIIVLAI 49 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888887764433
No 65
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=4.5e+02 Score=22.67 Aligned_cols=33 Identities=3% Similarity=-0.252 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 029607 10 AKLGLSAAASVRVSNELGAAHPRVAKFSVFVVN 42 (190)
Q Consensus 10 ~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~ 42 (190)
...+++.|..-+++...=.-..+|+|+.-+...
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~ 314 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT 314 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc
Confidence 344455554444433322222345555544443
No 66
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.89 E-value=3.2e+02 Score=20.49 Aligned_cols=60 Identities=7% Similarity=0.003 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 19 SVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 19 ~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
.|.--..-...++++-|+..++....++ ....++.++++.+.+.|+-+-+..+.+...+-
T Consensus 21 ip~f~~lt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL 80 (203)
T PF01914_consen 21 IPIFLSLTKGMSPKERRRIARRASIIAF----IILLIFAFFGQLILNFFGISLPAFRIAGGIIL 80 (203)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3333334344445555566655544444 34556778899999999977666666555443
No 67
>COG1738 yhhQ Uncharacterized member of the PurR regulon [General function prediction only]
Probab=22.88 E-value=3.6e+02 Score=20.85 Aligned_cols=79 Identities=13% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHh
Q 029607 13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNG 92 (190)
Q Consensus 13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~ 92 (190)
...-.++-++.+.+|+ +++|+.+..++..+++.+..+...+..-+ ......++...+.-....|+...+.....
T Consensus 63 p~~Fl~tD~~~e~yG~---~~Ark~V~~gf~~~lv~~~l~~~~~~~~~---~~~~~~~~a~~~~f~~~~RI~lASl~Ayi 136 (233)
T COG1738 63 PFIFLATDLTVEIYGK---KEARKAVFLGFFSALVFSILTQIALHFPP---SGSDEAQEALAALFSFVPRIALASLLAYI 136 (233)
T ss_pred HHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHhcchHHHHHHHHHHHH
Confidence 3344455567888875 47888888888888888877665544433 22222344444444455566666666555
Q ss_pred HHHHH
Q 029607 93 IQPIL 97 (190)
Q Consensus 93 ~~~~~ 97 (190)
+++..
T Consensus 137 vsQ~~ 141 (233)
T COG1738 137 VSQLL 141 (233)
T ss_pred HHHHH
Confidence 55544
No 68
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=22.88 E-value=3.3e+02 Score=20.38 Aligned_cols=61 Identities=13% Similarity=0.044 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHH
Q 029607 18 ASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTP 82 (190)
Q Consensus 18 ~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~ 82 (190)
..|..-..-...++++-++..++....++. ..+.+.++++.+.+.|+-+-+..+.+...+.
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~----ill~f~~~G~~iL~~fgIsl~afrIaGGiiL 83 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKANISSFI----ILLIFLVFGDTILKLFGISIDAFRIAGGILL 83 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344444444444555555666555444433 3446778899999999977666655554443
No 69
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=22.48 E-value=2.2e+02 Score=18.22 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=29.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcc
Q 029607 22 VSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLF 67 (190)
Q Consensus 22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf 67 (190)
+=+..|..+.+-.+....+....+..-.+.-......+.+.+.+.+
T Consensus 32 il~~lG~s~~~i~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (121)
T PF02687_consen 32 ILRALGASKRQIRKMFLYEALLIALIGILIGILLGILLIIFLINFL 77 (121)
T ss_pred HHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888877766555554455555555555443
No 70
>PHA03093 EEV glycoprotein; Provisional
Probab=22.36 E-value=2.4e+02 Score=20.96 Aligned_cols=33 Identities=12% Similarity=0.070 Sum_probs=22.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 029607 22 VSNELGAAHPRVAKFSVFVVNANSVFISVVFSA 54 (190)
Q Consensus 22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (190)
=|..+-+++-++.+|.+..+++++++++++...
T Consensus 19 YG~klkkk~~~kk~r~i~i~~RisiiiSIlsL~ 51 (185)
T PHA03093 19 YGDKLKKKKNKKKVKCIGICIRISIIISILSLI 51 (185)
T ss_pred echhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344454444457888888898888888876443
No 71
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.19 E-value=2.3e+02 Score=20.49 Aligned_cols=31 Identities=10% Similarity=0.339 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 029607 136 GVVGIWWGMITGVLLQTITLNILTVRTNWNA 166 (190)
Q Consensus 136 g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 166 (190)
+...+..++.+..++.+++.++.+.+.-|++
T Consensus 10 ~~l~~~~~~~~~~~i~Flil~~iL~~~~~kp 40 (173)
T PRK13460 10 SLLDVNPGLVVWTLVTFLVVVLVLKKFAWDV 40 (173)
T ss_pred CccCCcHhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555556666666666666555544
No 72
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=22.09 E-value=3.1e+02 Score=19.71 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=24.7
Q ss_pred HHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 029607 117 CYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTIT 154 (190)
Q Consensus 117 ~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~ 154 (190)
++.+..++...++.+.+.+|...+|..++.--+..+.+
T Consensus 41 ~M~~~y~~~~~lm~~spy~G~~s~~~ftv~fv~m~~~l 78 (155)
T PF10777_consen 41 AMYAAYLAVAALMYYSPYFGLGSVWGFTVFFVVMAAFL 78 (155)
T ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHH
Confidence 34455566666777777778888887776655554443
No 73
>PRK10483 tryptophan permease; Provisional
Probab=21.44 E-value=5.1e+02 Score=21.97 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 029607 13 GLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVV 51 (190)
Q Consensus 13 gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 51 (190)
+.+....++ -+++| +|.|++|+....+..+.+++-+.
T Consensus 206 gfh~iIPsl-~~y~~-~d~~kir~~I~iGs~Iplv~yl~ 242 (414)
T PRK10483 206 GYHGNVPSL-MKYYG-KDPKTIVKCLVYGTLMALALYTI 242 (414)
T ss_pred cCCCcchHH-HHHhC-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 444333344 44554 66778888887777666655544
No 74
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.99 E-value=2.9e+02 Score=20.20 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCC
Q 029607 30 HPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTS 69 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~ 69 (190)
|+++-|+-.+.. ++++...++++-+.|+..+..+|++
T Consensus 7 dk~~YRk~~n~v---~~~~v~~lai~sl~~s~llI~lFg~ 43 (165)
T PF11286_consen 7 DKERYRKHLNRV---IVACVASLAILSLAFSQLLIALFGG 43 (165)
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 555555555544 4455555677788889999999984
No 75
>PRK00523 hypothetical protein; Provisional
Probab=20.95 E-value=2.2e+02 Score=17.64 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 029607 138 VGIWWGMITGVLLQTITLNILTVRTNWNA 166 (190)
Q Consensus 138 ~g~~~a~~i~~~~~~~~~~~~~~~~~~~~ 166 (190)
.|+|+...+-.++.+++.-+++.++..++
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666655555555444444433333
No 76
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=20.82 E-value=1.7e+02 Score=18.75 Aligned_cols=29 Identities=0% Similarity=-0.090 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029607 30 HPRVAKFSVFVVNANSVFISVVFSAIVLI 58 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (190)
+++-....+|+++.++.++-++|.+.+.+
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCilAiI~ 42 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICILAIIL 42 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 45667889999999999999986655554
No 77
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=20.42 E-value=4.5e+02 Score=22.48 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=10.0
Q ss_pred HHHHHHHHhhHHHhhccCCcH
Q 029607 51 VFSAIVLIFRADLSKLFTSNS 71 (190)
Q Consensus 51 ~~~~~~~~~~~~i~~lf~~~~ 71 (190)
+++++++...+.+-++..+||
T Consensus 467 ~~~v~~~~~~~~~~~~~~~~~ 487 (489)
T PRK10207 467 GVAVVMALMVPWLNRMINTPE 487 (489)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 334444444555555544443
No 78
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=20.27 E-value=3.5e+02 Score=19.59 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchHH
Q 029607 142 WGMITGVLLQTITLNILTVRTNWNA 166 (190)
Q Consensus 142 ~a~~i~~~~~~~~~~~~~~~~~~~~ 166 (190)
+.+.+..++.++++++.+.+.-|++
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~p 42 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGP 42 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555544
No 79
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=20.23 E-value=2.2e+02 Score=18.47 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=16.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHH
Q 029607 135 IGVVGIWWGMITGVLLQTITLNILT 159 (190)
Q Consensus 135 ~g~~g~~~a~~i~~~~~~~~~~~~~ 159 (190)
+.-.|+|+..++...+..+++++.-
T Consensus 30 ~~~Lgm~~lvI~~iFil~VilwfvC 54 (94)
T PF05393_consen 30 WPNLGMWFLVICGIFILLVILWFVC 54 (94)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHH
Confidence 3445678888888877766655443
No 80
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.19 E-value=4.2e+02 Score=20.48 Aligned_cols=38 Identities=13% Similarity=0.303 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccC
Q 029607 30 HPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFT 68 (190)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~ 68 (190)
+++...+.+..++...+.+-++++ +++....++..+|+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~-lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFA-LVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH-HHHHhcccchhhhh
Confidence 455555566666554444444433 34444566666665
Done!