Query 029607
Match_columns 190
No_of_seqs 132 out of 1609
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 01:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.9 1.6E-22 5.4E-27 167.1 12.3 161 2-162 281-446 (460)
2 3mkt_A Multi antimicrobial ext 99.7 2E-18 6.9E-23 142.4 6.5 157 4-162 57-217 (460)
3 4ev6_A Magnesium transport pro 50.2 86 0.0029 24.2 10.7 52 109-164 278-338 (339)
4 2jek_A RV1873; structural geno 32.1 1.2E+02 0.0041 20.6 5.6 89 22-113 53-142 (145)
5 2iub_A CORA, divalent cation t 30.4 1.5E+02 0.005 23.2 6.7 15 150-164 348-362 (363)
6 2knc_B Integrin beta-3; transm 23.8 1.3E+02 0.0043 18.1 5.6 21 136-156 9-29 (79)
7 2k1k_A Ephrin type-A receptor 17.9 1.2E+02 0.004 15.4 3.1 9 139-147 15-23 (38)
8 4aps_A DI-OR tripeptide H+ sym 16.5 3.9E+02 0.013 20.9 11.9 48 106-154 420-467 (491)
9 2a65_A Leutaa, Na(+):neurotran 13.7 5.5E+02 0.019 21.2 7.9 21 105-126 374-394 (519)
10 2qjy_A Cytochrome B; cytochrom 12.9 5.6E+02 0.019 20.9 12.3 74 80-154 95-170 (445)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.88 E-value=1.6e-22 Score=167.09 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=151.3
Q ss_pred cchhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHH
Q 029607 2 NYLNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLT 81 (190)
Q Consensus 2 ~i~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l 81 (190)
++..+..++..+++.+..|.+++++|+||+||+++..+.+...+..++++.++.+..+++++.++|++|+|+.+.+..++
T Consensus 281 ~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 360 (460)
T 3mkt_A 281 NFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL 360 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cC-CCchhHHHHHHHHHHHHHHHHH
Q 029607 82 PLLAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TN-IGVVGIWWGMITGVLLQTITLN 156 (190)
Q Consensus 82 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~ 156 (190)
++++++.++++.+.+..++++|.||++.+++.++++.|++++|+++++... ++ +|+.|+|+++.+++.+..++..
T Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~ 440 (460)
T 3mkt_A 361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLG 440 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999987 66 8999999999999999888776
Q ss_pred HHHhhc
Q 029607 157 ILTVRT 162 (190)
Q Consensus 157 ~~~~~~ 162 (190)
++++|.
T Consensus 441 ~~~~~~ 446 (460)
T 3mkt_A 441 QRLYWL 446 (460)
T ss_dssp SSSSSS
T ss_pred HHHHHH
Confidence 655543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.74 E-value=2e-18 Score=142.45 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=143.0
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHH
Q 029607 4 LNWDINAKLGLSAAASVRVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPL 83 (190)
Q Consensus 4 ~~~~~~~~~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i 83 (190)
..+...+..|++.+..+.+++++|++|+|++++..+.++....+++++.+++ +.+.+++..+++.|+|+.+.+..|+++
T Consensus 57 ~~~~~~~~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i 135 (460)
T 3mkt_A 57 WLPSILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHA 135 (460)
T ss_dssp HHHHHHHHHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4455667889999999999999999999999999999999999999997765 788999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhccCcchHHHHHHHHHHHHhHhHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHH
Q 029607 84 LAISAFLNGIQPILSGVAIGSGWQAIVAYVNLACYYIIDLPIAYVRGFK----TNIGVVGIWWGMITGVLLQTITLNILT 159 (190)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~v~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~ 159 (190)
..++.++........+++||.||++.++..++++ .++++++++++.+. +++|+.|+.+++.+++.+..++..+++
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~ 214 (460)
T 3mkt_A 136 VIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYI 214 (460)
T ss_dssp GGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 58899999999976 378999999999999999988877766
Q ss_pred hhc
Q 029607 160 VRT 162 (190)
Q Consensus 160 ~~~ 162 (190)
+++
T Consensus 215 ~~~ 217 (460)
T 3mkt_A 215 VTS 217 (460)
T ss_dssp HTC
T ss_pred HhC
Confidence 553
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=50.20 E-value=86 Score=24.22 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHhcCCCc---------hhHHHHHHHHHHHHHHHHHHHHhhcch
Q 029607 109 IVAYVNLACYYIIDLPIAYVRGFKTNIGV---------VGIWWGMITGVLLQTITLNILTVRTNW 164 (190)
Q Consensus 109 ~~~~~~~~~~~v~~i~~~~~l~~~~~~g~---------~g~~~a~~i~~~~~~~~~~~~~~~~~~ 164 (190)
..-..++++ ++.+|+..+-.. ++|+. .|.|+...+ .++.+++.+++++|++|
T Consensus 278 ~mk~LTiit--~IflP~T~IaGi-yGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 278 IMKILTMVT--TIFAVPMWITGI-YGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHH--HHSSHHHHHHHH-TTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH--HHHHHHHHHHhh-ccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 333445554 344566554443 23322 255555444 34455566777788787
No 4
>2jek_A RV1873; structural genomics, unknown function, hypothetical protein, right-handed superhelix, TB structural genomics consortium; 1.38A {Mycobacterium tuberculosis} SCOP: a.255.1.1
Probab=32.08 E-value=1.2e+02 Score=20.60 Aligned_cols=89 Identities=11% Similarity=0.074 Sum_probs=58.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHH-HHhHHHHHHHH
Q 029607 22 VSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAF-LNGIQPILSGV 100 (190)
Q Consensus 22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~-~~~~~~~~~~~ 100 (190)
.++.+|-.+.++|+.++.+-+.-.=..-.. -.+.-.-.+....+|+..++ .+.-.. +-.+....+ -..+..++..+
T Consensus 53 ~A~~YgI~sl~EA~AYL~hpvLg~RL~e~~-~~ll~~~~~sa~~IfG~~D~-~KlrSs-MTLFa~a~~~~~~F~~vL~~~ 129 (145)
T 2jek_A 53 LAVRYGISSLEEAQAYLQHDLLGPRLHECT-GLVNQVQGRSIEEIFGPPDD-LKLCSS-MTLFARATDANQDFVALLAKY 129 (145)
T ss_dssp HHHHTSBCSHHHHHHHHHSTTHHHHHHHHH-HHHHHCCSCCHHHHSCTTHH-HHHHHH-HHHHHHHCSCCHHHHHHHHHH
T ss_pred hhhHhccCCHHHHHHHHcChHHHHHHHHHH-HHHHhccCCCHHHHcCChhH-HHHHhH-HHHHHHcCCCchHHHHHHHHH
Confidence 589999999999999999887666555543 33444456788899987333 333222 222222222 24677889999
Q ss_pred HhccCcchHHHHH
Q 029607 101 AIGSGWQAIVAYV 113 (190)
Q Consensus 101 l~~~g~~~~~~~~ 113 (190)
+.|..|+...-..
T Consensus 130 f~G~~D~~Tl~~L 142 (145)
T 2jek_A 130 YGGGEDRRTVALL 142 (145)
T ss_dssp STTCCCHHHHHHH
T ss_pred cCCCCCHHHHHHh
Confidence 9999988765543
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=30.45 E-value=1.5e+02 Score=23.15 Aligned_cols=15 Identities=7% Similarity=0.459 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhcch
Q 029607 150 LQTITLNILTVRTNW 164 (190)
Q Consensus 150 ~~~~~~~~~~~~~~~ 164 (190)
+.++..+++++|++|
T Consensus 348 ~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 348 VIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHccc
Confidence 334445566677777
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.75 E-value=1.3e+02 Score=18.10 Aligned_cols=21 Identities=10% Similarity=0.234 Sum_probs=10.9
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 029607 136 GVVGIWWGMITGVLLQTITLN 156 (190)
Q Consensus 136 g~~g~~~a~~i~~~~~~~~~~ 156 (190)
++.++..+...+-++.+++.+
T Consensus 9 n~~~Iv~gvi~gilliGllll 29 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAAL 29 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHH
Confidence 455555565555554444433
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=17.86 E-value=1.2e+02 Score=15.43 Aligned_cols=9 Identities=22% Similarity=0.848 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 029607 139 GIWWGMITG 147 (190)
Q Consensus 139 g~~~a~~i~ 147 (190)
|+.++...+
T Consensus 15 GiVvG~v~g 23 (38)
T 2k1k_A 15 AVIFGLLLG 23 (38)
T ss_dssp HHHHHHHHH
T ss_pred eeehHHHHH
Confidence 333333333
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=16.50 E-value=3.9e+02 Score=20.86 Aligned_cols=48 Identities=10% Similarity=-0.043 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 029607 106 WQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTIT 154 (190)
Q Consensus 106 ~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~ 154 (190)
+.......+... .+.......+.....+.+....+........+..+.
T Consensus 420 ~g~~~g~~~~~~-~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 420 NSQMMSMWFLSS-SVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp SSSSTHHHHHHH-HHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 333333344443 233333333333334445555555544444444443
No 9
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=13.72 E-value=5.5e+02 Score=21.25 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=9.4
Q ss_pred CcchHHHHHHHHHHHHhHhHHH
Q 029607 105 GWQAIVAYVNLACYYIIDLPIA 126 (190)
Q Consensus 105 g~~~~~~~~~~~~~~v~~i~~~ 126 (190)
.|.+....+.++. +++++|..
T Consensus 374 ~R~~~~~~v~~~~-fllgl~~~ 394 (519)
T 2a65_A 374 SRKHAVLWTAAIV-FFSAHLVM 394 (519)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHHHHHHH
Confidence 3444444444444 45555443
No 10
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=12.87 E-value=5.6e+02 Score=20.86 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhHHH-HHHHHHhcc-CcchHHHHHHHHHHHHhHhHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 029607 80 LTPLLAISAFLNGIQP-ILSGVAIGS-GWQAIVAYVNLACYYIIDLPIAYVRGFKTNIGVVGIWWGMITGVLLQTIT 154 (190)
Q Consensus 80 ~l~i~~~~~~~~~~~~-~~~~~l~~~-g~~~~~~~~~~~~~~v~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~ 154 (190)
+++....+.++.+.-. +.++++.|. .+++...+..-+.. .+..-...++.+...+|-.+.|.++++.++++++-
T Consensus 95 ~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l-~ll~m~taF~GYvLPwgQmSfWgatVITnLlsaIP 170 (445)
T 2qjy_A 95 YLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLI-YLAMMATAFMGYVLPWGQMSFWGATVITGLFGAIP 170 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH-HHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHH-HHHHHHHHHHheeccCCccchHHHHHHHHHHHHhh
Confidence 4555566666655555 567777754 44466666554442 33344556677788899999999999999887764
Done!