Query 029607
Match_columns 190
No_of_seqs 132 out of 1609
Neff 9.4
Searched_HMMs 13730
Date Tue Mar 26 01:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029607.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029607hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jeka1 a.255.1.1 (A:6-145) Hy 25.3 75 0.0055 19.9 5.2 91 21-113 47-137 (140)
2 d2yvxa3 f.57.1.1 (A:276-448) M 14.5 1.5E+02 0.011 18.9 6.4 35 23-57 66-100 (173)
3 d2csba3 a.60.2.4 (A:410-464) T 12.6 59 0.0043 15.9 1.8 21 60-80 15-35 (55)
4 d1v54l_ f.23.6.1 (L:) Mitochon 11.4 99 0.0072 15.1 2.6 28 37-64 17-44 (46)
5 d2iuba2 f.17.3.1 (A:286-349) M 10.5 92 0.0067 16.1 2.4 8 139-146 41-48 (64)
6 d2r6gg1 f.58.1.1 (G:7-296) Mal 8.2 2.2E+02 0.016 19.1 4.4 50 22-72 185-235 (290)
7 d1oedc_ f.36.1.1 (C:) Acetylch 7.4 3E+02 0.022 17.9 11.0 45 115-159 40-85 (260)
8 d2o3fa1 a.4.1.20 (A:1-83) Puta 7.1 2E+02 0.015 15.6 3.0 31 12-42 46-76 (83)
9 d2fyuk1 f.23.15.1 (K:1-53) Sub 6.0 1.5E+02 0.011 15.0 1.8 29 23-51 3-31 (53)
10 d2a65a1 f.54.1.1 (A:5-513) Na( 5.7 4.4E+02 0.032 19.4 5.3 11 12-22 249-259 (509)
No 1
>d2jeka1 a.255.1.1 (A:6-145) Hypothetical protein Rv1873 (MT1922) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.27 E-value=75 Score=19.86 Aligned_cols=91 Identities=10% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccCCcHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Q 029607 21 RVSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRADLSKLFTSNSEVVQAVSDLTPLLAISAFLNGIQPILSGV 100 (190)
Q Consensus 21 ~is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~ 100 (190)
-.++.+|-++.++|+.++.+=+.-.=..-.. -.+.-.-.+....+|+. |+..+.-+.....-...---..+..++..+
T Consensus 47 ~~a~~YaI~sl~EA~AYL~HPvLG~RL~ec~-~~ll~~~~~s~~~IfG~-~D~lKlrSsmTLF~~a~~~~~~F~~~L~~~ 124 (140)
T d2jeka1 47 PLAVRYGISSLEEAQAYLQHDLLGPRLHECT-GLVNQVQGRSIEEIFGP-PDDLKLCSSMTLFARATDANQDFVALLAKY 124 (140)
T ss_dssp HHHHHTSBCSHHHHHHHHHSTTHHHHHHHHH-HHHHHCCSCCHHHHSCT-THHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHhccCCHHHHHHHHhChHhHHHHHHHH-HHHHHccCCCHHHHCCC-hhHHHHHhHHHHHHHhCCCchHHHHHHHHH
Confidence 3789999999999999998877666555543 44455667778888887 443333222222211111123567788999
Q ss_pred HhccCcchHHHHH
Q 029607 101 AIGSGWQAIVAYV 113 (190)
Q Consensus 101 l~~~g~~~~~~~~ 113 (190)
+.|..|.+..-..
T Consensus 125 f~G~~d~~Tl~~L 137 (140)
T d2jeka1 125 YGGGEDRRTVALL 137 (140)
T ss_dssp STTCCCHHHHHHH
T ss_pred hCCCCCHHHHHHH
Confidence 9999888765543
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=14.48 E-value=1.5e+02 Score=18.95 Aligned_cols=35 Identities=6% Similarity=0.014 Sum_probs=24.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029607 23 SNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVL 57 (190)
Q Consensus 23 s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (190)
+-+.|+-+.++.++..++-+..++..+..++.+..
T Consensus 66 ~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 66 ALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp HHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556777888888888888888877766543
No 3
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=12.58 E-value=59 Score=15.93 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=13.9
Q ss_pred hHHHhhccCCcHHHHHHHHhH
Q 029607 60 RADLSKLFTSNSEVVQAVSDL 80 (190)
Q Consensus 60 ~~~i~~lf~~~~~v~~~~~~~ 80 (190)
++.+.+-|++++++.+++..+
T Consensus 15 aerllrafgnpervkqlaref 35 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREF 35 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 345667777777777776554
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.39 E-value=99 Score=15.13 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q 029607 37 SVFVVNANSVFISVVFSAIVLIFRADLS 64 (190)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 64 (190)
-.+....+++.++..++.-+++.+.++.
T Consensus 17 k~rLla~m~~~fGsgfa~PF~ivRhqLl 44 (46)
T d1v54l_ 17 KWRLLAMMTLFFGSGFAAPFFIVRHQLL 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHh
Confidence 3344445555555555666666666553
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=10.53 E-value=92 Score=16.13 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 029607 139 GIWWGMIT 146 (190)
Q Consensus 139 g~~~a~~i 146 (190)
|.|+...+
T Consensus 41 ~~~~~~~~ 48 (64)
T d2iuba2 41 GYPVVLAV 48 (64)
T ss_dssp -CHHHHHH
T ss_pred HHHHHHHH
Confidence 44544444
No 6
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=8.22 E-value=2.2e+02 Score=19.12 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=33.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHhhccCCcHH
Q 029607 22 VSNELGAAHPRVAKFSVFVVNANSVFISVVFSAIVLIFRA-DLSKLFTSNSE 72 (190)
Q Consensus 22 is~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~lf~~~~~ 72 (190)
.|+..|+++.+..++..--.+.=++..+.++..... +.+ .....++.+++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~-~~~f~~~~~~~~~~~ 235 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAA-ITEVPVASLLLRDVN 235 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHCCSGG
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhh-ccccccceeccCCCC
Confidence 478889999998888888887777777766554443 344 34555555443
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.44 E-value=3e+02 Score=17.87 Aligned_cols=45 Identities=11% Similarity=0.045 Sum_probs=25.5
Q ss_pred HHHHHHhHhHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHHHHHH
Q 029607 115 LACYYIIDLPIAYVRGFKT-NIGVVGIWWGMITGVLLQTITLNILT 159 (190)
Q Consensus 115 ~~~~~v~~i~~~~~l~~~~-~~g~~g~~~a~~i~~~~~~~~~~~~~ 159 (190)
+++..++...+.=.+.... ..++.|.|+...+.....+++....+
T Consensus 40 lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~~t~~V 85 (260)
T d1oedc_ 40 LLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIVNCGIV 85 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444432 45677888887777766666654443
No 8
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=7.06 E-value=2e+02 Score=15.59 Aligned_cols=31 Identities=26% Similarity=0.123 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 029607 12 LGLSAAASVRVSNELGAAHPRVAKFSVFVVN 42 (190)
Q Consensus 12 ~gl~~a~~~~is~~~G~~~~~~~~~~~~~~~ 42 (190)
.+.+.++.++..+.+|=+.+.+.|..+...+
T Consensus 46 ~~vS~sTi~Rf~kklG~~gf~e~k~~l~~el 76 (83)
T d2o3fa1 46 ANSSDAAVIRLCKSLGLKGFQDLKMRVAGDL 76 (83)
T ss_dssp TTCCHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567788889999999999999988776543
No 9
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.01 E-value=1.5e+02 Score=15.00 Aligned_cols=29 Identities=17% Similarity=0.005 Sum_probs=20.0
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 029607 23 SNELGAAHPRVAKFSVFVVNANSVFISVV 51 (190)
Q Consensus 23 s~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 51 (190)
++.+|.+..+-++.........+..-++.
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~gl~ 31 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGAVG 31 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhhee
Confidence 56677777788888877776666655543
No 10
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=5.67 E-value=4.4e+02 Score=19.39 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=4.2
Q ss_pred hHHHHHHHHHH
Q 029607 12 LGLSAAASVRV 22 (190)
Q Consensus 12 ~gl~~a~~~~i 22 (190)
.+++.|..+.+
T Consensus 249 fSlgiG~G~~i 259 (509)
T d2a65a1 249 FTLSLGFGAII 259 (509)
T ss_dssp HHHTTTSSHHH
T ss_pred hhhcccCCcee
Confidence 33343333333
Done!