BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029609
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 94/123 (76%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
++ + T KAP A+GPYSQA+ + +++SG +G+ P +G+ VS + ++ +Q LKN+GE
Sbjct: 6 IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 65
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIE 182
ILKA+G D+++VVKTT+LLAD+ DF TVNEIY +YF S PARA YQVAALP +R+EIE
Sbjct: 66 ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 125
Query: 183 CIA 185
+A
Sbjct: 126 AVA 128
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 94/125 (75%)
Query: 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNI 120
S +++ + T+KAPAA+G YSQA+ + ++VSG +G+ P +G+ V + ++ +Q LKN+
Sbjct: 2 SIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNL 61
Query: 121 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 180
GEILKA+G D+++VVKTT+LLAD+ DF TVNEIY YF PARA YQVAALP +R+E
Sbjct: 62 GEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIE 121
Query: 181 IECIA 185
IE IA
Sbjct: 122 IEAIA 126
>pdb|1NQ3|A Chain A, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|B Chain B, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|C Chain C, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|D Chain D, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|E Chain E, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
pdb|1NQ3|F Chain F, Crystal Structure Of The Mammalian Tumor Associated
Antigen Uk114
Length = 136
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 91/125 (72%)
Query: 61 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNI 120
S ++ + T KAPAA+GPYSQA+ + +++SG LG+ P +G+ V + ++ +Q L NI
Sbjct: 2 SLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNI 61
Query: 121 GEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVE 180
GEILKA+G D+++VVK T+LLAD+ DF VN++Y +YF S PARA YQVAALP RVE
Sbjct: 62 GEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGRVE 121
Query: 181 IECIA 185
IE IA
Sbjct: 122 IEAIA 126
>pdb|3L7Q|A Chain A, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|B Chain B, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|C Chain C, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|D Chain D, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|E Chain E, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|F Chain F, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|G Chain G, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|H Chain H, Crystal Structure Of Aldr From Streptococcus Mutans
pdb|3L7Q|I Chain I, Crystal Structure Of Aldr From Streptococcus Mutans
Length = 125
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/119 (53%), Positives = 81/119 (68%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASG 128
T+KAPAA+GPY Q NL+F SG + L PETG+ + TIE+QT+QVLKNI IL +G
Sbjct: 6 TDKAPAAIGPYVQGKIVGNLLFASGQVPLSPETGQVIGTTIEEQTQQVLKNISAILTEAG 65
Query: 129 ADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187
D+ VVKTT L+D+ DF NE+YA F S PAR+ +VA LP D ++EIE IA L
Sbjct: 66 TDFDHVVKTTCFLSDIDDFVPFNEVYATAFKSDFPARSAVEVARLPKDVKIEIEVIAEL 124
>pdb|2CSL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CSL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|B Chain B, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|C Chain C, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|D Chain D, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|E Chain E, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CVL|F Chain F, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
pdb|2CW4|A Chain A, Crystal Structure Of Ttha0137 From Thermus Thermophilus
Hb8
Length = 124
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 84/121 (69%), Gaps = 1/121 (0%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEIL 124
EAV T++APAA+GPY+QA+KA VFVSG + L P+ G V I QTE+V +N+ +L
Sbjct: 2 EAVKTDRAPAAIGPYAQAVKAGGFVFVSGQIPLAPD-GSLVEGDIRVQTERVXENLKAVL 60
Query: 125 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 184
+A+G+ S VV+TT LAD +DF NE+YA+YF P PARAT V ALP RVE+ C+
Sbjct: 61 EAAGSGLSRVVQTTCFLADXEDFPGFNEVYARYFTPPYPARATVAVKALPRGVRVEVACV 120
Query: 185 A 185
A
Sbjct: 121 A 121
>pdb|2DYY|A Chain A, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|B Chain B, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|C Chain C, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|D Chain D, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|E Chain E, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|F Chain F, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|G Chain G, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|H Chain H, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|I Chain I, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|J Chain J, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|K Chain K, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
pdb|2DYY|L Chain L, Crystal Structure Of Putative Translation Initiation
Inhibitor Ph0854 From Pyrococcus Horikoshii
Length = 126
Score = 126 bits (316), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+KE + T AP +GPYSQAIKA N +F++G + + P+TG+ V I+DQT QVL+NI
Sbjct: 1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKA 60
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIE 182
IL+A+G + V+K T+ L D+ DF +NE+YA+YF PAR +V+ LP D +EIE
Sbjct: 61 ILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIE 120
Query: 183 CIA 185
IA
Sbjct: 121 AIA 123
>pdb|1XRG|A Chain A, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|B Chain B, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
pdb|1XRG|C Chain C, Conserved Hypothetical Protein From Clostridium
Thermocellum Cth-2968
Length = 156
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 82/121 (67%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEIL 124
E V TNKAP A+GPYSQAI + V+ SG + + P+TG+ V IE+Q +QVL+N+ +L
Sbjct: 34 EVVKTNKAPEAIGPYSQAIVTGSFVYTSGQIPINPQTGEVVDGGIEEQAKQVLENLKNVL 93
Query: 125 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 184
+A+G+ + VVKTT+ + D F VNE+YAKYF P PAR+ +V+ LP +EIE +
Sbjct: 94 EAAGSSLNKVVKTTVFIKDXDSFAKVNEVYAKYFSEPYPARSCVEVSKLPKGVLIEIEAV 153
Query: 185 A 185
A
Sbjct: 154 A 154
>pdb|2B33|A Chain A, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
pdb|2B33|B Chain B, Crystal Structure Of A Putative Endoribonuclease (tm0215)
From Thermotoga Maritima Msb8 At 2.30 A Resolution
Length = 140
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 82/123 (66%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+K V T+KAP A+GPYSQA+ N++FVSG + + PETG+ V TIE++TE+VL+N+
Sbjct: 13 MKRFVETDKAPKAIGPYSQAVVVGNMMFVSGQIPIDPETGELVQGTIEEKTERVLENLKA 72
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIE 182
IL+A G VVK T+ + F+ VNE+Y++YF PAR+ VA LP + +EIE
Sbjct: 73 ILEAGGFSLKDVVKVTVFTTSMDYFQRVNEVYSRYFGDHRPARSFVAVAQLPRNVEIEIE 132
Query: 183 CIA 185
IA
Sbjct: 133 AIA 135
>pdb|1QD9|A Chain A, Bacillus Subtilis Yabj
pdb|1QD9|B Chain B, Bacillus Subtilis Yabj
pdb|1QD9|C Chain C, Bacillus Subtilis Yabj
Length = 124
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEIL 124
+AV T APAA+GPYSQ I NN+ + SG + L P +G+ V+ I++QT QV N+ +L
Sbjct: 2 KAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVL 60
Query: 125 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 184
+ +GA + +VVK T+ +AD++ F VNE+Y +YF + PAR+ +VA LP DA VEIE I
Sbjct: 61 EEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVI 120
Query: 185 A 185
A
Sbjct: 121 A 121
>pdb|3K0T|A Chain A, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|B Chain B, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
pdb|3K0T|C Chain C, Crystal Structure Of Pspto -Psp Protein In Complex With
D-Be From Pseudomonas Syringae Pv. Tomato Str. Dc3000
Length = 143
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
K + ++KAPAA+GPYSQAIKA N V+ SG + L P T + V + IE Q QV +N+ +
Sbjct: 20 KTVITSDKAPAAIGPYSQAIKAGNTVYXSGQIPLDPSTXELV-EGIEAQITQVFENLKSV 78
Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
+A+G + +VK I L DL F VNEI YF P PARA VAALP A+VE +
Sbjct: 79 AQAAGGSFKDIVKLNIFLTDLGHFAKVNEIXGSYFSQPYPARAAIGVAALPRGAQVEXDA 138
Query: 184 I 184
I
Sbjct: 139 I 139
>pdb|3MQW|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
pdb|3MQW|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Histolytica With Higher Solvent Content And An
Ordered N-Te
Length = 148
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 79/116 (68%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADY 131
AP A+G YSQAI N +V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +G+
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSM 92
Query: 132 SSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187
VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 93 DKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|3M4S|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|B Chain B, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|C Chain C, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|D Chain D, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|E Chain E, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
pdb|3M4S|F Chain F, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Orthorhombic Form
Length = 148
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 79/116 (68%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADY 131
AP A+G YSQAI N +V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +G+
Sbjct: 33 APEAVGAYSQAIICNGMVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSM 92
Query: 132 SSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187
VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 93 DKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|1X25|A Chain A, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
pdb|1X25|B Chain B, Crystal Structure Of A Member Of Yjgf Family From
Sulfolobus Tokodaii (st0811)
Length = 128
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 72/120 (60%)
Query: 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEIL 124
E V T KAP +GPYSQAIK N ++VSG + + P T + V I+ QT QVL NI EI+
Sbjct: 5 ETVFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIV 64
Query: 125 KASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 184
KA+G S V + L D+ F N +YA+YF PAR T +V+ LP DA +EI I
Sbjct: 65 KAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVI 124
>pdb|3M1X|A Chain A, Crystal Structure Of A Putative Endoribonuclease L-Psp
From Entamoeba Histolytica, Rhomobohedral Form
Length = 148
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 78/116 (67%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADY 131
AP A+G YSQAI N V+ SG +GL +TG F TIE+Q++QV+ N+ +L+ +G+
Sbjct: 33 APEAVGAYSQAIICNGXVYCSGQIGLDRKTGDFAGKTIEEQSKQVMTNLKYVLEEAGSSM 92
Query: 132 SSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187
VVKTT LLAD+KDF N IYA+ F + PARA + AALP A VE+ECIA L
Sbjct: 93 DKVVKTTCLLADIKDFGVFNGIYAEAFGNHKPARACFAAAALPKGALVEVECIATL 148
>pdb|2UYN|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
Length = 129
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+K+ + T +AP A+GPY Q + ++VF SG + + P+TG+ +D ++DQ L+N+
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXPQTGEIPAD-VQDQARLSLENVXA 59
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA---PARATYQVAALPLDARV 179
I+ A+G ++K T+ + DL DF T+NE+Y ++F P R+ QVA LP D ++
Sbjct: 60 IVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKL 119
Query: 180 EIECIA 185
EIE IA
Sbjct: 120 EIEAIA 125
>pdb|3QUW|A Chain A, Crystal Structure Of Yeast Mmf1
Length = 153
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKA 126
V T AP A YSQA+KANN V+VSG + P+ K V +I ++ EQV +N+ IL
Sbjct: 32 VSTKLAPPAAASYSQAMKANNFVYVSGQIPYTPD-NKPVQGSISEKAEQVFQNVKNILAE 90
Query: 127 SGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 186
S + ++VK + LAD+K+F N +YAK+F + PAR+ VA+LPL+ +E+E IA
Sbjct: 91 SNSSLDNIVKVNVFLADMKNFAEFNSVYAKHFHTHKPARSCVGVASLPLNVDLEMEVIAV 150
Query: 187 LPN 189
N
Sbjct: 151 EKN 153
>pdb|2UYJ|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYJ|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Ethylene
Glycol
pdb|2UYN|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYN|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound
2-Ketobutyrate
pdb|2UYP|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYP|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Propionate
pdb|2UYK|A Chain A, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|B Chain B, Crystal Structure Of E. Coli Tdcf With Bound Serine
pdb|2UYK|C Chain C, Crystal Structure Of E. Coli Tdcf With Bound Serine
Length = 129
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%), Gaps = 4/126 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+K+ + T +AP A+GPY Q + ++VF SG + + P+TG+ +D ++DQ L+N+
Sbjct: 1 MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVXPQTGEIPAD-VQDQARLSLENVKA 59
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA---PARATYQVAALPLDARV 179
I+ A+G ++K T+ + DL DF T+NE+Y ++F P R+ QVA LP D ++
Sbjct: 60 IVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKL 119
Query: 180 EIECIA 185
EIE IA
Sbjct: 120 EIEAIA 125
>pdb|3VCZ|A Chain A, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|B Chain B, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
pdb|3VCZ|C Chain C, 1.80 Angstrom Resolution Crystal Structure Of A Putative
Translation Initiation Inhibitor From Vibrio Vulnificus
Cmcp6
Length = 153
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 72/121 (59%), Gaps = 5/121 (4%)
Query: 69 TNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASG 128
T+ APAA+GPY Q + N+V SG + + P TG+ +D I Q Q L N+ +++ASG
Sbjct: 31 TDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPAD-IAAQARQSLDNVKAVVEASG 89
Query: 129 ADYSSVVKTTILLADLKDFKTVNEIYAKYFP----SPAPARATYQVAALPLDARVEIECI 184
+VK T+ + DL DF TVNE+Y +F + PAR+ +VA LP D +EIE I
Sbjct: 90 LTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAI 149
Query: 185 A 185
A
Sbjct: 150 A 150
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+ + + T APAA+GPY Q + N++ SG + + P+TG+ +D + Q Q L N+
Sbjct: 1 MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPAD-VAAQARQSLDNVKA 59
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP---SPAPARATYQVAALPLDARV 179
I++A+G +VKTT+ + DL DF TVN Y +F + PAR+ +VA LP D ++
Sbjct: 60 IVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATFPARSXVEVARLPKDVKI 119
Query: 180 EIECIA 185
EIE IA
Sbjct: 120 EIEAIA 125
>pdb|1JD1|A Chain A, Crystal Structure Of Yeo7_yeast
pdb|1JD1|B Chain B, Crystal Structure Of Yeo7_yeast
pdb|1JD1|C Chain C, Crystal Structure Of Yeo7_yeast
pdb|1JD1|D Chain D, Crystal Structure Of Yeo7_yeast
pdb|1JD1|E Chain E, Crystal Structure Of Yeo7_yeast
pdb|1JD1|F Chain F, Crystal Structure Of Yeo7_yeast
Length = 129
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 83 IKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLA 142
+K NNL+F+SG + + P+ K V +I D+ EQV++NI +L+AS + VVK I LA
Sbjct: 24 MKVNNLIFLSGQIPVTPD-NKLVEGSIADKAEQVIQNIKNVLEASNSSLDRVVKVNIFLA 82
Query: 143 DLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAA 186
D+ F N +YAKYF + PAR+ VAALPL +E+E IAA
Sbjct: 83 DINHFAEFNSVYAKYFNTHKPARSCVAVAALPLGVDMEMEAIAA 126
>pdb|2CWJ|A Chain A, Crystal Structure Of Ape1501, A Putative Endonuclease From
Aeropyrum Pernix
Length = 123
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADY 131
AP +GPYSQA+++ +FVSG + + PETG ++ ++ L N+ I++ +G
Sbjct: 4 APKPVGPYSQAVESGCFMFVSGQIPINPETGALEEGGFKESAKRALDNLKAIVEGAGYSM 63
Query: 132 SSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECI 184
+VK T+ + D+ F NE+Y +YF P PARA VAALPL A +E+E +
Sbjct: 64 DDIVKVTVYITDISRFSEFNEVYREYFNRPYPARAVVGVAALPLGAPLEVEAV 116
>pdb|3R0P|A Chain A, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|B Chain B, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|C Chain C, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|D Chain D, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|E Chain E, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
pdb|3R0P|F Chain F, Crystal Structure Of L-Psp Putative Endoribonuclease From
Uncultured Organism
Length = 127
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 71/124 (57%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
K + ++ APAA+G YSQA+K NN V++SG + L P T + V Q QV KN+ +
Sbjct: 4 KAIIHSDNAPAAIGTYSQAVKVNNTVYLSGQIPLDPVTMQLVEGDFAVQAHQVFKNLRAV 63
Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
+A+G +VK + L DL +F VNE+ +YF +P PARA + LP + +E +
Sbjct: 64 CEAAGGGLRDIVKLNVYLTDLANFPIVNEVMGQYFQAPYPARAAIGINQLPRASLIEADG 123
Query: 184 IAAL 187
I +
Sbjct: 124 IMVI 127
>pdb|1J7H|A Chain A, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|B Chain B, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
pdb|1J7H|C Chain C, Solution Structure Of Hi0719, A Hypothetical Protein From
Haemophilus Influenzae
Length = 130
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 63 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE 122
+ + + T KAPAA+GPY QA+ NLV SG + + P TG+ +D + Q Q L+N+
Sbjct: 2 MTQIIHTEKAPAAIGPYVQAVDLGNLVLTSGQIPVNPATGEVPADIVA-QARQSLENVKA 60
Query: 123 ILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPA----PARATYQVAALPLDAR 178
I++ +G + +VKTT+ + DL DF VN Y ++F PAR+ +VA LP D
Sbjct: 61 IIEKAGLTAADIVKTTVFVKDLNDFAAVNAEYERFFKENNHPNFPARSCVEVARLPKDVG 120
Query: 179 VEIECIA 185
+EIE IA
Sbjct: 121 LEIEAIA 127
>pdb|3V4D|A Chain A, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|C Chain C, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|F Chain F, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|B Chain B, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|D Chain D, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
pdb|3V4D|E Chain E, Crystal Structure Of Rutc Protein A Member Of The Yjgf
Family From E.Coli
Length = 134
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%)
Query: 64 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEI 123
K ++ + A L P+ A+ +V+VSG L +D + QT VL+ I ++
Sbjct: 9 KSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKV 68
Query: 124 LKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIEC 183
++ +G + V +I + D K++ +NEIYA++FP PAR Q + DA VEI
Sbjct: 69 IETAGGTXADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIAT 128
Query: 184 IAAL 187
IA +
Sbjct: 129 IAHI 132
>pdb|3K12|A Chain A, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|B Chain B, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|C Chain C, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|D Chain D, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|E Chain E, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
pdb|3K12|F Chain F, Crystal Structure Of An Uncharacterized Protein A6v7t0
From Pseudomonas Aeruginosa
Length = 122
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKA 126
VV +A AL N V++ G + P S I+DQT Q+L+NI +L++
Sbjct: 7 VVKRRAEXAL--------HGNTVYIGGQVADDP------SGDIQDQTRQILENIDRLLQS 52
Query: 127 SGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIA 185
G+D V+ ILLA +D+ +N+++ ++FP AP RA + RVE +A
Sbjct: 53 VGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEXIVVA 112
Query: 186 A 186
A
Sbjct: 113 A 113
>pdb|3KJJ|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJJ|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Hexagonal Crystal
Form)
pdb|3KJK|A Chain A, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|B Chain B, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|C Chain C, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|D Chain D, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|E Chain E, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|F Chain F, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|G Chain G, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|H Chain H, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|I Chain I, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|J Chain J, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|K Chain K, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
pdb|3KJK|L Chain L, Crystal Structure Of Nmb1025, A Member Of Yjgf Protein
Family, From Neisseria Meningitidis (Monoclinic Crystal
Form)
Length = 128
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 138
YS+A+ AN L+F+SG VPE G+ T +QT VL I L G+D + V+
Sbjct: 20 YSEAVGANGLIFLSGX---VPENGE----TAAEQTADVLAQIDRWLAECGSDKAHVLDAV 72
Query: 139 ILLADLKDFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPNA 190
I L D D+ N ++ + + PARA + + RVEI+ A +A
Sbjct: 73 IYLRDXGDYAEXNGVWDAWVAAGRTPARACVEARLARPEWRVEIKITAVKRDA 125
>pdb|3I7T|A Chain A, Crystal Structure Of Rv2704, A Member Of Highly Conserved
YjgfYER057CUK114 FAMILY, FROM MYCOBACTERIUM TUBERCULOSIS
Length = 149
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 138
YS+A++ LV V+G G D I QT L+ I L +GA + VV+T
Sbjct: 19 YSRAVRIGPLVVVAGTTG--------SGDDIAAQTRDALRRIEIALGQAGATLADVVRTR 70
Query: 139 ILLADLKDFKTVNEIYAKYFPSPAPARATYQVAAL 173
I + D+ ++ V E++A+ F P + +V AL
Sbjct: 71 IYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTAL 105
>pdb|3GTZ|A Chain A, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|B Chain B, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
pdb|3GTZ|C Chain C, Crystal Structure Of A Putative Translation Initiation
Inhibitor From Salmonella Typhimurium
Length = 124
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 138
+S + NN ++ +GV PE +D E QT L I +L+ G+ S ++ T
Sbjct: 14 WSDVVIYNNTLWYTGV----PEN--LDADAFE-QTANTLAQIDAVLEKQGSSKSRILDAT 66
Query: 139 ILLADLKDFKTVNEIYAKY-FPSPAPARATYQVAALPLDARVEIECIAAL 187
I L+D DF +N+ + + AP R T Q + +VEI+ +AA+
Sbjct: 67 IFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMNPKYKVEIKIVAAV 116
>pdb|3LYB|A Chain A, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|B Chain B, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|C Chain C, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
pdb|3LYB|D Chain D, Structure Of Putative Endoribonuclease(Kp1_3112) From
Klebsiella Pneumoniae
Length = 165
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 27/144 (18%)
Query: 72 APAALGPYSQAIKANNLVFVSGVLGL-------------VPE--------TGKFVSDT-- 108
A A L Y+ +A + +F+SG++ + VPE TG+F +D
Sbjct: 7 AGAPLARYAAWRRAGDFIFLSGIIPVNPLTGTIVNGFQDVPEPVRELLGATGEFSTDAKQ 66
Query: 109 --IEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARA 166
I Q+ VL++I + ++G S V+K +L F + + ++P P
Sbjct: 67 GPILAQSWYVLESIRRTVASAGGQXSDVIKLVQYFRNLDHFPYYSRVRKLFYPDQPPVST 126
Query: 167 TYQVAALPLDARV--EIECIAALP 188
QV+ DA V E+E LP
Sbjct: 127 VVQVSEXLPDATVLIEVEATVWLP 150
>pdb|3LME|A Chain A, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|B Chain B, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|C Chain C, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|D Chain D, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|E Chain E, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|F Chain F, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|G Chain G, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|H Chain H, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|I Chain I, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|J Chain J, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|K Chain K, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
pdb|3LME|L Chain L, Structure Of Probable Translation Initiation Inhibitor
From (Rpa2473) From Rhodopseudomonas Palustris
Length = 138
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIG 121
+LK T+K G +S +A + VF+ G+ G TGK V D E + ++ N+
Sbjct: 2 SLKIIAPTDKTITPSGTWSIGARAGDFVFIGGMHGTDRVTGKMV-DGDEARIRRMFDNML 60
Query: 122 EILKASGADYSSVVKTTILLADLKDFK-TVNEIYAKYF-PSPAPARATYQVAALPLDARV 179
+A+GA + V+ T+ + D+ ++ VN++ + P P R QV AL
Sbjct: 61 AAAEAAGATKADAVRLTVFVTDVAKYRPVVNKVQKDIWGDGPYPPRTVLQVPALDQGDIA 120
Query: 180 EIECIAALP 188
EI+ P
Sbjct: 121 EIDGTFYAP 129
>pdb|1PF5|A Chain A, Structural Genomics, Protein Yjgh
Length = 131
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTT 138
YS AI++ +L+FVSG +G E G D + Q N+ L A+G + ++ T
Sbjct: 21 YSAAIRSGDLLFVSGQVG-SREDGTPEPD-FQQQVRLAFDNLHATLAAAGCTFDDIIDVT 78
Query: 139 ILLAD----LKDFKTV-NEIYAKYFPSPAPARATYQVAALPLDARVEIECIAALPN 189
D +D TV NEI++ P P V L EI+ IA +P
Sbjct: 79 SFHTDPENQFEDIMTVKNEIFSA---PPYPNWTAVGVTWL-AGFDFEIKVIARIPE 130
>pdb|1MYT|A Chain A, Crystal Structure To 1.74 Angstroms Resolution Of
Metmyoglobin From Yellowfin Tuna (Thunnus Albacares): An
Example Of A Myoglobin Lacking The D Helix
Length = 146
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 116 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 169
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 63 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMHEKAGLDAGGQ 121
Query: 170 VA 171
A
Sbjct: 122 TA 123
>pdb|2NRL|A Chain A, Blackfin Tuna Myoglobin
pdb|2NX0|A Chain A, Ferrous Nitrosyl Blackfin Tuna Myoglobin
Length = 147
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 116 VLKNIGEILKASGADYSSVVK------TTILLADLKDFKTVNEIYAKYFPSPAPARATYQ 169
VLK +GE+LKA G+ +++++K T + +FK ++E+ K A A Q
Sbjct: 64 VLKKLGELLKAKGS-HAAILKPLANSHATKHKIPINNFKLISEVLVKVMQEKAGLDAGGQ 122
Query: 170 VA 171
A
Sbjct: 123 TA 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,125,117
Number of Sequences: 62578
Number of extensions: 184079
Number of successful extensions: 605
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 41
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)