Query 029609
Match_columns 190
No_of_seqs 183 out of 1277
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 15:39:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03610 RutC pyrimidine util 100.0 1.5E-35 3.2E-40 226.8 14.7 123 65-187 4-126 (127)
2 TIGR00004 endoribonuclease L-P 100.0 1.9E-35 4.1E-40 224.4 15.1 123 65-187 2-124 (124)
3 COG0251 TdcF Putative translat 100.0 3.3E-35 7E-40 225.9 15.0 122 67-189 7-130 (130)
4 PRK11401 putative endoribonucl 100.0 3.9E-35 8.5E-40 224.8 14.3 123 65-188 3-128 (129)
5 PF01042 Ribonuc_L-PSP: Endori 100.0 4.9E-34 1.1E-38 215.9 15.5 118 70-187 2-121 (121)
6 cd06154 YjgF_YER057c_UK114_lik 100.0 1E-33 2.3E-38 213.9 13.7 117 68-185 2-119 (119)
7 cd06152 YjgF_YER057c_UK114_lik 100.0 2.6E-33 5.7E-38 210.7 13.7 108 78-186 2-114 (114)
8 cd02199 YjgF_YER057c_UK114_lik 100.0 1E-31 2.2E-36 209.3 14.0 119 67-185 4-141 (142)
9 cd02198 YjgH_like YjgH belongs 100.0 9.1E-32 2E-36 200.9 12.6 108 78-187 2-111 (111)
10 cd06150 YjgF_YER057c_UK114_lik 100.0 2E-31 4.3E-36 197.2 12.7 103 78-186 2-105 (105)
11 cd06156 eu_AANH_C_2 A group of 100.0 1.1E-30 2.3E-35 197.6 13.5 105 79-185 1-118 (118)
12 cd06153 YjgF_YER057c_UK114_lik 100.0 1.6E-29 3.5E-34 190.2 12.4 105 79-185 1-114 (114)
13 cd00448 YjgF_YER057c_UK114_fam 100.0 7.5E-29 1.6E-33 181.6 12.8 106 79-185 1-107 (107)
14 cd06155 eu_AANH_C_1 A group of 100.0 3.1E-28 6.7E-33 179.1 12.4 97 83-186 4-101 (101)
15 cd06151 YjgF_YER057c_UK114_lik 100.0 4.6E-28 1E-32 184.8 13.0 107 79-185 1-126 (126)
16 KOG2317 Putative translation i 100.0 5.5E-28 1.2E-32 186.0 9.8 126 62-187 5-130 (138)
17 PF14588 YjgF_endoribonc: YjgF 99.8 1.8E-18 3.9E-23 135.0 11.5 127 61-187 2-148 (148)
18 PF02662 FlpD: Methyl-viologen 51.2 76 0.0017 23.8 6.5 59 87-150 54-112 (124)
19 TIGR01884 cas_HTH CRISPR locus 38.2 92 0.002 25.0 5.6 47 110-159 37-84 (203)
20 cd04915 ACT_AK-Ectoine_2 ACT d 33.3 77 0.0017 20.7 3.6 52 106-159 9-66 (66)
21 cd04918 ACT_AK1-AT_2 ACT domai 30.8 1.2E+02 0.0027 19.5 4.3 45 115-159 15-65 (65)
22 KOG0100 Molecular chaperones G 30.0 1.2E+02 0.0027 28.2 5.4 52 113-165 342-393 (663)
23 KOG2240 RNA polymerase II gene 28.5 81 0.0018 25.2 3.5 79 77-158 76-157 (162)
24 PRK14643 hypothetical protein; 26.2 3.1E+02 0.0067 21.7 6.6 65 108-172 3-86 (164)
25 PRK13689 hypothetical protein; 26.1 94 0.002 21.6 3.1 22 110-131 9-30 (75)
26 cd04937 ACT_AKi-DapG-BS_2 ACT 25.3 1.8E+02 0.004 18.5 4.4 46 113-158 14-63 (64)
27 COG4401 AroH Chorismate mutase 24.4 1.8E+02 0.004 21.9 4.6 39 105-143 12-51 (125)
28 PF11230 DUF3029: Protein of u 24.1 1E+02 0.0022 28.7 3.9 40 113-152 415-460 (487)
29 KOG1179 Very long-chain acyl-C 24.1 1.4E+02 0.0031 28.8 4.8 44 87-139 246-290 (649)
30 PF07736 CM_1: Chorismate muta 24.1 3.1E+02 0.0068 20.7 5.9 50 114-165 20-72 (118)
31 PF07108 PipA: PipA protein; 23.1 61 0.0013 26.0 1.9 34 89-127 40-73 (200)
32 COG1022 FAA1 Long-chain acyl-C 22.6 49 0.0011 31.8 1.6 34 87-121 195-228 (613)
33 TIGR01796 CM_mono_aroH monofun 21.6 2.9E+02 0.0062 20.9 5.2 44 106-149 11-57 (117)
34 PF01071 GARS_A: Phosphoribosy 21.5 1.9E+02 0.0041 23.6 4.6 38 107-144 140-178 (194)
35 cd02185 AroH Chorismate mutase 21.0 3E+02 0.0065 20.8 5.2 45 106-150 11-58 (117)
36 PTZ00009 heat shock 70 kDa pro 20.9 2.7E+02 0.0058 26.8 6.2 53 107-160 302-358 (653)
No 1
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=100.00 E-value=1.5e-35 Score=226.80 Aligned_cols=123 Identities=28% Similarity=0.509 Sum_probs=115.2
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++..|.+.++|||++++|+++|+|||+|+|++++.+.++|+++|++++|+||+++|+++|++++||+++++|++|+
T Consensus 4 ~~i~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~g~~~~~~d~~~Q~~~~l~ni~~iL~~aG~~~~dvv~~~iyl~d~ 83 (127)
T TIGR03610 4 KVIIPAGTSKPLAPFVPGTLADGVVYVSGTLPFDKDNNVVHVGDAAAQTRHVLETIKSVIETAGGTMDDVTFNHIFIRDW 83 (127)
T ss_pred eEeCCCCCCCCCCCCCCeEEECCEEEEeccCCcCCCCCeeCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCH
Confidence 45789999999999999999999999999999998655445789999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
+||+.+|++|.+||++++|+||++++..++++++||||++|++
T Consensus 84 ~~~~~~~~~~~~~f~~~~Pa~t~v~v~l~~p~~lVEIe~vA~~ 126 (127)
T TIGR03610 84 ADYAAINEVYAEYFPGEKPARYCIQCGLVKPDALVEIASVAHI 126 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEEeccCCCCCEEEEEEEEEe
Confidence 9999999999999998899999999977788999999999986
No 2
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=100.00 E-value=1.9e-35 Score=224.38 Aligned_cols=123 Identities=54% Similarity=0.825 Sum_probs=117.1
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.+++++.|++.|+|||++++|+++|+|||+|+|+++|++.++|+++|++++|+||+++|+++|++++||+++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~~~~~g~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvv~~~vyv~~~ 81 (124)
T TIGR00004 2 KIISTDKAPAAIGPYSQAVKVGNTLFVSGQIPLDPSTGELVGGDIAEQAEQVLENLKAILEAAGLSLDDVVKTTVFLTDL 81 (124)
T ss_pred ceecCCCCCCCCCCCcceEEECCEEEEeeeCCCcCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeCh
Confidence 34678899999999999999999999999999999878877789999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 145 KDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
+||+.++++|.+||++++|+||+++|..|+++++||||++|++
T Consensus 82 ~~~~~~~~~~~~~f~~~~Pa~t~v~v~~L~~~~~vEIe~vA~~ 124 (124)
T TIGR00004 82 NDFAEVNEVYGQYFDEPYPARSAVQVAALPKGVLVEIEAIAVK 124 (124)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEECccCCCCCEEEEEEEEEC
Confidence 9999999999999999899999999999999999999999974
No 3
>COG0251 TdcF Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-35 Score=225.87 Aligned_cols=122 Identities=52% Similarity=0.798 Sum_probs=115.1
Q ss_pred hcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCc-cHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcC
Q 029609 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSD-TIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLK 145 (190)
Q Consensus 67 i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~-d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~ 145 (190)
+.++..|++.++|||++++|+++|+|||+|+|+ +|+.+.+ |+++|++++|+||+++|+++|++++||||+++|++|++
T Consensus 7 ~~~~~~~~~~~~yS~av~~~~~vfvSGQi~~~~-~g~~v~~~d~~~Q~~~~l~ni~a~L~~aG~~~~~Vvk~~v~l~d~~ 85 (130)
T COG0251 7 IATPNAPAPIGPYSQAVVAGGLVFVSGQIPLDP-TGELVGGEDIEAQTRQALANIKAVLEAAGSTLDDVVKVTVFLTDMN 85 (130)
T ss_pred ccCCCCCCCCCCccceEEECCEEEEeCcCCcCC-CCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCch
Confidence 467788999999999999999999999999998 6766654 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCC-CCCeeEEEEcCCCCCCceEEEEEEEEecC
Q 029609 146 DFKTVNEIYAKYFPS-PAPARATYQVAALPLDARVEIECIAALPN 189 (190)
Q Consensus 146 d~~~~~~v~~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA~~p~ 189 (190)
||..+|++|.+||+. ++|+|++++|..||++++||||++|++++
T Consensus 86 ~f~~~n~v~~~~f~~~~~PArs~V~v~~l~~~~~VEIeaiA~~~~ 130 (130)
T COG0251 86 DFAAMNEVYDEFFEVGGYPARSAVGVALLPPDALVEIEAIAALPE 130 (130)
T ss_pred HHHHHHHHHHHHhccCCCCceeEEEhhhCCCCCeEEEEEEEEecC
Confidence 999999999999996 59999999999999999999999999874
No 4
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=100.00 E-value=3.9e-35 Score=224.75 Aligned_cols=123 Identities=37% Similarity=0.704 Sum_probs=115.5
Q ss_pred hhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 65 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 65 ~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
+.++++..|.+.|+|||++++|+++|+|||+|+|+++|++ ++|+++|++++|+||+++|+++|++++||+|+++|++|+
T Consensus 3 ~~~~~~~~~~~~~~ys~av~~g~~v~vSGq~~~d~~~~~~-~~d~~~Q~~~~~~ni~~~L~aaG~~~~~Vvk~~vyl~d~ 81 (129)
T PRK11401 3 KIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEI-PADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDL 81 (129)
T ss_pred ceecCCCCCCCCCCccceEEECCEEEEcCcCCccCCCCcc-CcCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccH
Confidence 3467888899999999999999999999999999887765 589999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCC---CCeeEEEEcCCCCCCceEEEEEEEEec
Q 029609 145 KDFKTVNEIYAKYFPSP---APARATYQVAALPLDARVEIECIAALP 188 (190)
Q Consensus 145 ~d~~~~~~v~~~~f~~~---~Part~v~V~~L~~~~lVEIe~iA~~p 188 (190)
+||+.+|++|.+||+++ +|+||+++|..|+++++||||++|++.
T Consensus 82 ~~~~~~~~v~~~~f~~~~~~~Part~v~v~~L~~~~~VEIe~~A~~~ 128 (129)
T PRK11401 82 NDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRS 128 (129)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCceEEEEcccCCCCCeEEEEEEEEec
Confidence 99999999999999963 899999999999999999999999874
No 5
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=100.00 E-value=4.9e-34 Score=215.92 Aligned_cols=118 Identities=50% Similarity=0.805 Sum_probs=108.8
Q ss_pred CCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHH
Q 029609 70 NKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT 149 (190)
Q Consensus 70 ~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~ 149 (190)
...|+|.++||++++.|+++|+|||+|+|+++|++.++|+++|++++|+||+.+|+++|++++||+|+++|++|+++|+.
T Consensus 2 ~~a~~p~~~Ys~av~~g~~v~isGq~~~d~~~~~~~~~~~~~Q~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~ 81 (121)
T PF01042_consen 2 ISAPEPIGPYSQAVRAGDTVFISGQVGIDPATGQVVPGDIEEQTRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPA 81 (121)
T ss_dssp TTSCCCSSSSBSEEEETTEEEEEEEESBCTTTSSBSSSSHHHHHHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHH
T ss_pred CcCCCCCCCCCCEEEECCEEEEeeeCCcCCCCCcCCCCCHHHHHHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHH
Confidence 35789999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCC--CCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 150 VNEIYAKYFPSP--APARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 150 ~~~v~~~~f~~~--~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
++++|++||++. +|+||+++|..|+++++||||++|++
T Consensus 82 ~~~v~~~~f~~~~~~Pa~t~v~v~~L~~~~~vEIe~~A~v 121 (121)
T PF01042_consen 82 VNEVWKEFFPDHPHRPARTTVGVSALPPGALVEIEAIAVV 121 (121)
T ss_dssp HHHHHHHHSTSSTS--EEEEEEESBSGGG-SEEEEEEEE-
T ss_pred HHHHHHHHhcccCCCCcEEEEEeCcCCCCCcEEEEEEEEC
Confidence 999999999965 59999999999999999999999975
No 6
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=1e-33 Score=213.90 Aligned_cols=117 Identities=30% Similarity=0.393 Sum_probs=111.0
Q ss_pred cCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCH
Q 029609 68 VTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDF 147 (190)
Q Consensus 68 ~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~ 147 (190)
.+++.|++.++||+++++|+++|+|||+|+|+++ ...++|+++|++++|+||+++|+++|++++||+|+++|++|++||
T Consensus 2 ~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~-~~~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d~~~~ 80 (119)
T cd06154 2 SSGSPWEEQAGYSRAVRVGNWVFVSGTTGYDYDG-MVMPGDAYEQTRQCLEIIEAALAEAGASLEDVVRTRMYVTDIADF 80 (119)
T ss_pred CCCCCcccccCcccEEEECCEEEEeCcCcCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHH
Confidence 4678899999999999999999999999999864 456889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCeeEEEEcCCC-CCCceEEEEEEE
Q 029609 148 KTVNEIYAKYFPSPAPARATYQVAAL-PLDARVEIECIA 185 (190)
Q Consensus 148 ~~~~~v~~~~f~~~~Part~v~V~~L-~~~~lVEIe~iA 185 (190)
+.+|++|.+||++++|+||+++|..| +++++||||++|
T Consensus 81 ~~~~~~~~~~f~~~~Part~v~v~~L~~~~~lVEIe~~A 119 (119)
T cd06154 81 EAVGRAHGEVFGDIRPAATMVVVSLLVDPEMLVEIEVTA 119 (119)
T ss_pred HHHHHHHHHHcCCCCCceEEEEecccCCCCcEEEEEEEC
Confidence 99999999999999999999999999 789999999986
No 7
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=100.00 E-value=2.6e-33 Score=210.73 Aligned_cols=108 Identities=32% Similarity=0.492 Sum_probs=103.2
Q ss_pred CcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcC-CCccceeEEEEEecCc---CCHHHHHHH
Q 029609 78 PYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASG-ADYSSVVKTTILLADL---KDFKTVNEI 153 (190)
Q Consensus 78 ~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G-~~l~dVvk~~vyl~d~---~d~~~~~~v 153 (190)
+|||++++|+++|+|||+|+|++++.+ ++|+++|++++|+||+++|+++| ++++||+|+++|++|+ ++++.+|++
T Consensus 2 ~ys~av~~g~~v~~SGq~g~d~~g~~~-~~d~~~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~ 80 (114)
T cd06152 2 HYSQAVRIGDRIEISGQGGWDPDTGKI-PEDLEEEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVEN 80 (114)
T ss_pred CCCCeEEECCEEEEeccCCcCCCCCcc-CcCHHHHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHH
Confidence 799999999999999999999987665 88999999999999999999999 9999999999999999 799999999
Q ss_pred HHHhCCCCCCeeEEEEcCCCC-CCceEEEEEEEE
Q 029609 154 YAKYFPSPAPARATYQVAALP-LDARVEIECIAA 186 (190)
Q Consensus 154 ~~~~f~~~~Part~v~V~~L~-~~~lVEIe~iA~ 186 (190)
|++||++++|+||+++|..|+ ++++||||++|+
T Consensus 81 ~~~~f~~~~Pa~t~v~V~~L~~p~~lVEIe~~A~ 114 (114)
T cd06152 81 FKKWMPNHQPIWTCVGVTALGLPGMRVEIEVDAI 114 (114)
T ss_pred HHHHcCCCCCCeEEEEeccCCCCCcEEEEEEEEC
Confidence 999999999999999999997 699999999984
No 8
>cd02199 YjgF_YER057c_UK114_like_1 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.98 E-value=1e-31 Score=209.25 Aligned_cols=119 Identities=32% Similarity=0.430 Sum_probs=107.9
Q ss_pred hcCCCCCCCCCCcceEEEECCEEEEeeeccccCCC----Cccc----CccHHHHHHHHHHHHHHHHHHcCCCcc---cee
Q 029609 67 VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPET----GKFV----SDTIEDQTEQVLKNIGEILKASGADYS---SVV 135 (190)
Q Consensus 67 i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~----g~~~----~~d~~~Q~~~~l~nl~~iL~~~G~~l~---dVv 135 (190)
++++..+++.++||+++++|+++|+|||+|+|+++ |.+. .+|+++|++++|+||+++|+++|++++ ||+
T Consensus 4 ~~~~~~~~~~~~ys~av~~g~~l~vSGq~~~d~~~~~~~g~i~~~~~~~d~~~Qt~~~~~Ni~~vL~~aG~~~~~~~dVv 83 (142)
T cd02199 4 LELPPAPAPVGNYVPAVRTGNLLYVSGQLPRVDGKLVYTGKVGADLSVEEGQEAARLCALNALAALKAALGDLDRVKRVV 83 (142)
T ss_pred ccCCCCCCCCCccceEEEECCEEEEeCcCCCCCCCccccCccccccChHHHHHHHHHHHHHHHHHHHHhcCChhhcCCEE
Confidence 56888999999999999999999999999999852 3322 358899999999999999999999988 999
Q ss_pred EEEEEecCcCCHHHH-------HHHHHHhCCC-CCCeeEEEEcCCCCCCceEEEEEEE
Q 029609 136 KTTILLADLKDFKTV-------NEIYAKYFPS-PAPARATYQVAALPLDARVEIECIA 185 (190)
Q Consensus 136 k~~vyl~d~~d~~~~-------~~v~~~~f~~-~~Part~v~V~~L~~~~lVEIe~iA 185 (190)
|+++|++|++||+.+ +++|.+||++ ++|+||+++|..|+++++||||++|
T Consensus 84 k~~vyl~d~~~~~~~~~~~~~~~~v~~~~f~~~~~Part~v~V~~L~~~~~VEIe~~A 141 (142)
T cd02199 84 RLTGFVNSAPDFTEQPKVANGASDLLVEVFGEAGRHARSAVGVASLPLNAAVEVEAIV 141 (142)
T ss_pred EEEEEEechHHhhhchhhhHHHHHHHHHHcCCCCCCceEEEEhhhCCCCCEEEEEEEE
Confidence 999999999999874 8899999995 6999999999999989999999998
No 9
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.98 E-value=9.1e-32 Score=200.88 Aligned_cols=108 Identities=31% Similarity=0.517 Sum_probs=101.8
Q ss_pred CcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCc-CCHHHHHHHHHH
Q 029609 78 PYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADL-KDFKTVNEIYAK 156 (190)
Q Consensus 78 ~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~-~d~~~~~~v~~~ 156 (190)
+||+++++|+++|+|||+|.|++ |+ .++|+++|++++|+||+++|+++|++++||+|+++|++|. +|++.+|++|.+
T Consensus 2 ~ys~av~~g~~l~vSGq~~~d~~-g~-~~~d~~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~ 79 (111)
T cd02198 2 GYSPAVRVGDTLFVSGQVGSDAD-GS-VAEDFEAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDE 79 (111)
T ss_pred CCcceEEECCEEEEecccCcCCC-CC-cCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHH
Confidence 69999999999999999999974 65 4789999999999999999999999999999999999965 899999999999
Q ss_pred hCCCCCCeeEEEEcCCCC-CCceEEEEEEEEe
Q 029609 157 YFPSPAPARATYQVAALP-LDARVEIECIAAL 187 (190)
Q Consensus 157 ~f~~~~Part~v~V~~L~-~~~lVEIe~iA~~ 187 (190)
||++++|+||+++|..|+ ++++||||++|++
T Consensus 80 ~f~~~~Pa~t~v~V~~L~~~~~~vEIe~~A~~ 111 (111)
T cd02198 80 YFKEPYPAWTAVGVAWLARPGLLVEIKVVAVR 111 (111)
T ss_pred HcCCCCCceehhhhhhcCCCCcEEEEEEEEEC
Confidence 999999999999999998 6999999999974
No 10
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=2e-31 Score=197.21 Aligned_cols=103 Identities=36% Similarity=0.487 Sum_probs=97.6
Q ss_pred CcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHh
Q 029609 78 PYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKY 157 (190)
Q Consensus 78 ~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~ 157 (190)
+|||++++|+++|+|||+|.|+ ++|+++|++++|+||+++|+++|++++||+|+++|++|++|++.+|++|.+|
T Consensus 2 ~~s~av~~g~~v~iSGq~~~~~------~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d~~~~~~~~~~~~~~ 75 (105)
T cd06150 2 RMSQAVVHNGTVYLAGQVADDT------SADITGQTRQVLAKIDALLAEAGSDKSRILSATIWLADMADFAAMNAVWDAW 75 (105)
T ss_pred CcCCEEEECCEEEEeCcCCcCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEccHHHHHHHHHHHHHH
Confidence 6999999999999999999986 4799999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCeeEEEEcCCCCCCceEEEEEEEE
Q 029609 158 FPS-PAPARATYQVAALPLDARVEIECIAA 186 (190)
Q Consensus 158 f~~-~~Part~v~V~~L~~~~lVEIe~iA~ 186 (190)
|++ ++|+||++++..++++++||||++|+
T Consensus 76 f~~~~~Pa~t~v~~~l~~~~~lvEIe~~Aa 105 (105)
T cd06150 76 VPPGHAPARACVEAKLADPGYLVEIVVTAA 105 (105)
T ss_pred cCCCCCCCeEEEEecccCCCCEEEEEEEEC
Confidence 995 89999999986667899999999984
No 11
>cd06156 eu_AANH_C_2 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the second of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.97 E-value=1.1e-30 Score=197.64 Aligned_cols=105 Identities=28% Similarity=0.385 Sum_probs=100.8
Q ss_pred cceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhC
Q 029609 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF 158 (190)
Q Consensus 79 ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f 158 (190)
|||++++|+++|+|||+|+||+++.+.++|+++|++++|+||+++|+++|+ +||+|+++|++|+++++.+|++|.+||
T Consensus 1 yS~av~~~~~i~vSGQ~g~d~~~~~~~~~~~~~Q~~qal~Ni~~vL~~aG~--~dVvk~~iyl~d~~~~~~~~~v~~~~f 78 (118)
T cd06156 1 YSQAIVVPKVAYISGQIGLIPATMTLLEGGITLQAVLSLQHLERVAKAMNV--QWVLAAVCYVTDESSVPIARSAWSKYC 78 (118)
T ss_pred CCceEEECCEEEEEeeCCccCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC--CCEEEEEEEEcChHHHHHHHHHHHHHh
Confidence 899999999999999999999877777899999999999999999999999 999999999999999999999999999
Q ss_pred CCC-------------CCeeEEEEcCCCCCCceEEEEEEE
Q 029609 159 PSP-------------APARATYQVAALPLDARVEIECIA 185 (190)
Q Consensus 159 ~~~-------------~Part~v~V~~L~~~~lVEIe~iA 185 (190)
+.+ +|+|++++|..||++++||||++.
T Consensus 79 ~~~~~~~~~~~~~~~~~P~~t~v~V~~L~~~~~VEie~i~ 118 (118)
T cd06156 79 SELDLEDESRNESDDVNPPLVIVVVPELPRGALVEWQGIA 118 (118)
T ss_pred cCccccccccccccCCCCcEEEEEcccCCCCCeEEEEEeC
Confidence 964 899999999999999999999974
No 12
>cd06153 YjgF_YER057c_UK114_like_5 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=1.6e-29 Score=190.20 Aligned_cols=105 Identities=30% Similarity=0.446 Sum_probs=96.0
Q ss_pred cceEEEE----CCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCC-----ccceeEEEEEecCcCCHHH
Q 029609 79 YSQAIKA----NNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGAD-----YSSVVKTTILLADLKDFKT 149 (190)
Q Consensus 79 ys~av~~----g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~-----l~dVvk~~vyl~d~~d~~~ 149 (190)
||+++.+ |+++|+|||+|+|++ |++.++|+++|++++|+||+.+|+++|++ ++||+|+++|++|++||+.
T Consensus 1 ~s~a~~~~~~~g~~v~vSGq~~~d~~-g~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~~~~~~dVvk~~vyl~d~~~~~~ 79 (114)
T cd06153 1 FSRATLLAAGGRTHLFISGTASIVGH-GTVHPGDVEAQTRETLENIEALLEAAGRGGGAQFLADLLRLKVYLRDREDLPA 79 (114)
T ss_pred CCCceeeccCCCcEEEEEeECcCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCccchhheeEEEEEEccHHHHHH
Confidence 8999988 899999999999985 56678999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEE
Q 029609 150 VNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 185 (190)
Q Consensus 150 ~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA 185 (190)
+|++|++||++.+|+ +++.+..++++++||||++|
T Consensus 80 ~~~v~~~~f~~~~P~-t~~~~~l~~p~~lvEIe~~A 114 (114)
T cd06153 80 VRAILAARLGPAVPA-VFLQADVCRPDLLVEIEAVA 114 (114)
T ss_pred HHHHHHHHcCCCCCE-EEEEeeecCCCcEEEEEEEC
Confidence 999999999986775 77766545689999999986
No 13
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=7.5e-29 Score=181.62 Aligned_cols=106 Identities=50% Similarity=0.784 Sum_probs=101.5
Q ss_pred cceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhC
Q 029609 79 YSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYF 158 (190)
Q Consensus 79 ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f 158 (190)
|+|++++|+++|+|||.|.|+++ ...++|+++|++++|+||+++|+++|.+++||+++++|++|+++++.+|++|.+||
T Consensus 1 ys~~~~~~~~~~~sGq~~~~~~~-~~~~~~~~~Q~~~~~~ni~~~L~~~g~~~~~iv~~~~yv~~~~~~~~~~~~~~~~~ 79 (107)
T cd00448 1 YSQAVRVGNLVFVSGQIPLDPDG-ELVPGDIEAQTRQALENLEAVLEAAGGSLDDVVKVTVYLTDMADFAAVNEVYDEFF 79 (107)
T ss_pred CCCeEEECCEEEEeccCCcCCCC-cccCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecHHHHHHHHHHHHHHh
Confidence 89999999999999999999875 45679999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCeeEEEEcCCCCCCceEEEEEEE
Q 029609 159 PS-PAPARATYQVAALPLDARVEIECIA 185 (190)
Q Consensus 159 ~~-~~Part~v~V~~L~~~~lVEIe~iA 185 (190)
++ ++|+|++++|..||++++||||++|
T Consensus 80 ~~~~~Pa~t~v~v~~l~~~~~VEie~~a 107 (107)
T cd00448 80 GEGPPPARTAVGVAALPPGALVEIEAIA 107 (107)
T ss_pred CCCCCCceEEEEeccCCCCCEEEEEEEC
Confidence 97 8999999999999999999999986
No 14
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=3.1e-28 Score=179.13 Aligned_cols=97 Identities=30% Similarity=0.616 Sum_probs=90.9
Q ss_pred EEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCC-CC
Q 029609 83 IKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFP-SP 161 (190)
Q Consensus 83 v~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~-~~ 161 (190)
.+.|+++|+|||+|.|+ ++|+++|++++|+||+++|+++|++++||+++++|++|++||+.+|++|.+||+ .+
T Consensus 4 ~~~g~~v~vSG~~~~~~------~~d~~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~~~~ 77 (101)
T cd06155 4 NRTGGLLWISNVTASES------DETVEEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFDKPN 77 (101)
T ss_pred EEECCEEEEecCCCCCC------CCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcCCCC
Confidence 46799999999999986 579999999999999999999999999999999999999999999999999999 56
Q ss_pred CCeeEEEEcCCCCCCceEEEEEEEE
Q 029609 162 APARATYQVAALPLDARVEIECIAA 186 (190)
Q Consensus 162 ~Part~v~V~~L~~~~lVEIe~iA~ 186 (190)
+|+|+++++ .|+++++||||++|+
T Consensus 78 ~Par~~v~~-~l~~~~lvEIe~vA~ 101 (101)
T cd06155 78 PPSRVCVEC-GLPEGCDVQLSCVAA 101 (101)
T ss_pred CCceEEEEe-ccCCCCEEEEEEEEC
Confidence 899999997 566899999999984
No 15
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=99.96 E-value=4.6e-28 Score=184.80 Aligned_cols=107 Identities=36% Similarity=0.480 Sum_probs=95.6
Q ss_pred cceEEEEC---CEEEEeeeccccCCC----Ccc-cCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEec-CcC----
Q 029609 79 YSQAIKAN---NLVFVSGVLGLVPET----GKF-VSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLA-DLK---- 145 (190)
Q Consensus 79 ys~av~~g---~~vyvSGq~~~dp~~----g~~-~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~-d~~---- 145 (190)
|||++++. ++||+|||+|.|++. |.. ..+|+++|++++|+||+++|+++|++++||+|+++|++ +.+
T Consensus 1 ~s~~~~v~~~~~~i~vSGq~~~~~d~~~~~g~~~~~~d~~~Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~ 80 (126)
T cd06151 1 IAQAVEVPAGAATIYLSGTVPAVVNASAPKGSPARYGDTETQTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGK 80 (126)
T ss_pred CCceEEeCCCceEEEEeccCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccch
Confidence 78999885 799999999987643 122 24799999999999999999999999999999999998 555
Q ss_pred -CHHHHHHHHHHhCCC----CCCeeEEEEcCCCC-CCceEEEEEEE
Q 029609 146 -DFKTVNEIYAKYFPS----PAPARATYQVAALP-LDARVEIECIA 185 (190)
Q Consensus 146 -d~~~~~~v~~~~f~~----~~Part~v~V~~L~-~~~lVEIe~iA 185 (190)
|++.++++|.+||++ ++|+||+++|..|+ ++++||||++|
T Consensus 81 ~~~~~~~~~~~~~f~~~~~~~~Pa~t~v~V~~L~~p~~~VEIe~iA 126 (126)
T cd06151 81 MDFAGFMKAYRQFFGTAEQPNKPARSTLQVAGLVNPGWLVEIEVVA 126 (126)
T ss_pred hhHHHHHHHHHHHhccccCCCCCceEEEEeeecCCCCcEEEEEEEC
Confidence 899999999999997 68999999999997 69999999986
No 16
>KOG2317 consensus Putative translation initiation inhibitor UK114/IBM1 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.5e-28 Score=185.99 Aligned_cols=126 Identities=59% Similarity=0.877 Sum_probs=121.1
Q ss_pred hhhhhhcCCCCCCCCCCcceEEEECCEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEe
Q 029609 62 NLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILL 141 (190)
Q Consensus 62 ~~~~~i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl 141 (190)
.++..+.+.|+|...|||||++++++.+|+|||.|++|.++++..+++.+|++++++|++.+|+++|++.+.+|+.++|+
T Consensus 5 ~l~v~v~S~~Ap~~igPYsQa~~~~~~~~~SGqigl~P~s~~~~~gg~~~q~~q~l~n~~~il~~a~a~~~~~V~~~i~l 84 (138)
T KOG2317|consen 5 VLHVQVISYWAPANIGPYSQATKANDVVFISGQIGLDPPSMKLVEGGIVDQTEQALLNLEEILKAAGASLDLVVKVTIFL 84 (138)
T ss_pred eeEEEEeeccCCCCcCChhHheeeCCEEEEeccccccCCCCCEeccchHHHHHHHHHHHHHHHHHhccCccccEEEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCCHHHHHHHHHHhCCCCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 142 ADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 142 ~d~~d~~~~~~v~~~~f~~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
.|+.||..+|++|.+||..+.|+|++++|..+|++.++|+++++..
T Consensus 85 ~d~~~f~~vn~v~~k~~~~~~pars~~~v~alp~~~~ie~~~i~~~ 130 (138)
T KOG2317|consen 85 ADIIDFAAVNKVYAKYFPKPNPARSCVQVAALPLNGKIEIECIAAE 130 (138)
T ss_pred ecchhHHHHHHHHHHHcCCCCcchhhHHHhhcCCCCceEEeeehhh
Confidence 9999999999999999999999999999999999999999999865
No 17
>PF14588 YjgF_endoribonc: YjgF/chorismate_mutase-like, putative endoribonuclease; PDB: 2OTM_B 3D01_D.
Probab=99.78 E-value=1.8e-18 Score=135.00 Aligned_cols=127 Identities=33% Similarity=0.419 Sum_probs=90.8
Q ss_pred hhhhhh-hcCCCCCCCCCCcceEEEECCEEEEeeeccccCC----CCcccC----ccHHHHHHHHHHHHHHHHHHcCCCc
Q 029609 61 SNLKEA-VVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPE----TGKFVS----DTIEDQTEQVLKNIGEILKASGADY 131 (190)
Q Consensus 61 ~~~~~~-i~~~~~p~~~g~ys~av~~g~~vyvSGq~~~dp~----~g~~~~----~d~~~Q~~~~l~nl~~iL~~~G~~l 131 (190)
++++++ +..|..|.|.|.|.+.+++|+++|+|||++.+.+ .|++.. ++-++-+|+|.-|+.+.|+++=+++
T Consensus 2 ~rL~~lGl~LP~~~~p~g~Y~p~~~~G~ll~vSGq~p~~~g~~~~~G~vG~~~s~e~g~~AAr~~~Ln~La~lk~~~G~L 81 (148)
T PF14588_consen 2 ARLAELGLELPEPPAPVGNYVPAVRVGNLLYVSGQLPRDDGKLLYTGKVGEDLSVEEGYEAARLCALNALAALKAALGDL 81 (148)
T ss_dssp HHHHHTT---------SSSC-SEEEETTEEEEEEE--EETTEE-SBS-BTTTB-HHHHHHHHHHHHHHHHHHHHHHCTSG
T ss_pred hhHHHcCCCCCCCCCCCceeeeEEEECCEEEEeccCcccCCEEeeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 466666 8899999999999999999999999999998743 222211 3456678999999999999877788
Q ss_pred cce---eEEEEEecCcCCHHH-------HHHHHHHhCC-CCCCeeEEEEcCCCCCCceEEEEEEEEe
Q 029609 132 SSV---VKTTILLADLKDFKT-------VNEIYAKYFP-SPAPARATYQVAALPLDARVEIECIAAL 187 (190)
Q Consensus 132 ~dV---vk~~vyl~d~~d~~~-------~~~v~~~~f~-~~~Part~v~V~~L~~~~lVEIe~iA~~ 187 (190)
+.| +|++.|+...+||.+ .++++.+.|+ .+.|+|+.+||..||.|+.||||+|+.+
T Consensus 82 drV~~ivkl~g~V~s~~~F~~~p~V~ngaSdll~~vfGe~G~HaRsAvGv~sLP~~a~VEie~i~ei 148 (148)
T PF14588_consen 82 DRVKRIVKLTGFVNSTPDFTEHPAVANGASDLLVEVFGEAGRHARSAVGVASLPLNAPVEIELIAEI 148 (148)
T ss_dssp GGECEEEEEEEEEEB-TT---HHHHHHHHHHHHHHHHGGGG-BEEEEEEESC-GGGBSEEEEEEEE-
T ss_pred hHEeEEEEEEEEEecCCCcccCchhhhhHHHHHHHHhCcCCCCcccccccccCCCCCeEEEEEEEEC
Confidence 765 999999999988755 5689999999 5899999999999999999999999864
No 18
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=51.23 E-value=76 Score=23.81 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=44.4
Q ss_pred CEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHH
Q 029609 87 NLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTV 150 (190)
Q Consensus 87 ~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~ 150 (190)
|=|++.|..+ |.-........++.-++.++.+|++.|...+.|--..++..+.+.|...
T Consensus 54 DGV~V~gC~~-----g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~ 112 (124)
T PF02662_consen 54 DGVLVAGCHP-----GDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISAPEGKRFAEI 112 (124)
T ss_pred CEEEEeCCCC-----CCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCcccHHHHHHH
Confidence 6777777543 2234456667889999999999999999999887777777777666553
No 19
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=38.24 E-value=92 Score=25.03 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHH-HHHHHHHhCC
Q 029609 110 EDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKT-VNEIYAKYFP 159 (190)
Q Consensus 110 ~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~-~~~v~~~~f~ 159 (190)
+++.+++.++++++++..+. +.++..++-.|..|+.. +.++......
T Consensus 37 ~~~~~~a~~~l~~~~~~~~~---~~~~~~~~~vd~~d~~~~~~~v~~~i~~ 84 (203)
T TIGR01884 37 EDGARRAVESLRAIISDLGG---NLVEGTIKEIELKDVPSILRQMSDIIKE 84 (203)
T ss_pred chHHHHHHHHHHHHHHHhcc---CCCcceEEEEecCCHHHHHHHHHHHHHh
Confidence 47889999999999999873 33556677777777655 4444444444
No 20
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.30 E-value=77 Score=20.71 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=34.3
Q ss_pred CccHHHHHHHHHHHHHHHHHHcCCCccce------eEEEEEecCcCCHHHHHHHHHHhCC
Q 029609 106 SDTIEDQTEQVLKNIGEILKASGADYSSV------VKTTILLADLKDFKTVNEIYAKYFP 159 (190)
Q Consensus 106 ~~d~~~Q~~~~l~nl~~iL~~~G~~l~dV------vk~~vyl~d~~d~~~~~~v~~~~f~ 159 (190)
+.+++ + ..++.++-+.|.+.|..+..+ .++.+.+.+.+--..++.++++||.
T Consensus 9 G~gm~-~-~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~ 66 (66)
T cd04915 9 GRDLS-T-PGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE 66 (66)
T ss_pred CCCCC-c-chHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence 44553 3 358888999999999887444 3444555554445567888888873
No 21
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.75 E-value=1.2e+02 Score=19.46 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCCcccee------EEEEEecCcCCHHHHHHHHHHhCC
Q 029609 115 QVLKNIGEILKASGADYSSVV------KTTILLADLKDFKTVNEIYAKYFP 159 (190)
Q Consensus 115 ~~l~nl~~iL~~~G~~l~dVv------k~~vyl~d~~d~~~~~~v~~~~f~ 159 (190)
..+.++-.+|++.|..+.-+. ++.+.+.+.+--..++.++++||.
T Consensus 15 ~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~~ 65 (65)
T cd04918 15 LILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred cHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 367788888899887774443 555555554334557778888763
No 22
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=30.05 E-value=1.2e+02 Score=28.21 Aligned_cols=52 Identities=17% Similarity=0.380 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCCCCCCee
Q 029609 113 TEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPAR 165 (190)
Q Consensus 113 ~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~~~~Par 165 (190)
++.+|.-++.+|+.+|...+||-. .+.+-.-..++.+..+.++||.+..|.+
T Consensus 342 Fr~TlkPv~kvl~Ds~lkKsdide-iVLVGGsTrIPKvQqllk~fF~GKepsk 393 (663)
T KOG0100|consen 342 FRKTLKPVQKVLEDSDLKKSDIDE-IVLVGGSTRIPKVQQLLKDFFNGKEPSK 393 (663)
T ss_pred HHHhhHHHHHHHhhcCcccccCce-EEEecCcccChhHHHHHHHHhCCCCccC
Confidence 667788899999999998777644 3455666688999999999998666654
No 23
>KOG2240 consensus RNA polymerase II general transcription factor BTF3 and related proteins [Transcription]
Probab=28.55 E-value=81 Score=25.20 Aligned_cols=79 Identities=18% Similarity=0.120 Sum_probs=46.2
Q ss_pred CCcceEEEECCEEEEeeeccccCCCCcccCcc---HHHHHHHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHH
Q 029609 77 GPYSQAIKANNLVFVSGVLGLVPETGKFVSDT---IEDQTEQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEI 153 (190)
Q Consensus 77 g~ys~av~~g~~vyvSGq~~~dp~~g~~~~~d---~~~Q~~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v 153 (190)
++-.|+...++++-|+|+...++.+.. .+++ +..|.-..+..|...|.......++-. .++|.. .++++.+.+-
T Consensus 76 ~~~vqasl~~nTf~ItG~~~~k~l~Em-lPsilsqLg~~sl~~Lr~La~~l~~~~~~~~~~~-~~~~~~-dd~~p~Lven 152 (162)
T KOG2240|consen 76 NPKVQASLAANTFTITGHAETKQLTEM-LPSILSQLGPDSLTALRRLAEQLPKQDGKEGADA-ATIEDD-DDDVPELVEN 152 (162)
T ss_pred CccccccccCCeEEEecCCcccchhhh-cchhhhhcChhhHHHHHHHHHhcccccccCCCCc-cchhhc-ccchHHHHHh
Confidence 445566667899999999988876543 3433 333444455555555554333222222 566665 4567777666
Q ss_pred HHHhC
Q 029609 154 YAKYF 158 (190)
Q Consensus 154 ~~~~f 158 (190)
+.++.
T Consensus 153 f~~~~ 157 (162)
T KOG2240|consen 153 FDEAA 157 (162)
T ss_pred HHHHh
Confidence 66553
No 24
>PRK14643 hypothetical protein; Provisional
Probab=26.16 E-value=3.1e+02 Score=21.70 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCcccee--------EEEEEecC---------cCCHHHHHHHHHHhCC--CCCCeeEEE
Q 029609 108 TIEDQTEQVLKNIGEILKASGADYSSVV--------KTTILLAD---------LKDFKTVNEIYAKYFP--SPAPARATY 168 (190)
Q Consensus 108 d~~~Q~~~~l~nl~~iL~~~G~~l~dVv--------k~~vyl~d---------~~d~~~~~~v~~~~f~--~~~Part~v 168 (190)
|++....++.+.++.++++.|..+-||- -+++|+.+ ++|...+++...+.+. ++-|-.=.+
T Consensus 3 ~~~~~~~~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~~d~i~~~Y~L 82 (164)
T PRK14643 3 DFESIKFQINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQFIKTSEKYLL 82 (164)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCccCCCCCCeEE
Confidence 5677777888889999999999888772 26899843 1356778888888887 333443444
Q ss_pred EcCC
Q 029609 169 QVAA 172 (190)
Q Consensus 169 ~V~~ 172 (190)
+|+.
T Consensus 83 EVSS 86 (164)
T PRK14643 83 EISS 86 (164)
T ss_pred EecC
Confidence 5543
No 25
>PRK13689 hypothetical protein; Provisional
Probab=26.08 E-value=94 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCc
Q 029609 110 EDQTEQVLKNIGEILKASGADY 131 (190)
Q Consensus 110 ~~Q~~~~l~nl~~iL~~~G~~l 131 (190)
.+|+++++..+-++|+.+....
T Consensus 9 d~qvE~il~el~~VLeKH~Ap~ 30 (75)
T PRK13689 9 DEQVEQLLAELLAVLEKHKAPT 30 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc
Confidence 4899999999999999998754
No 26
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=25.34 E-value=1.8e+02 Score=18.46 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHcCCCcccee----EEEEEecCcCCHHHHHHHHHHhC
Q 029609 113 TEQVLKNIGEILKASGADYSSVV----KTTILLADLKDFKTVNEIYAKYF 158 (190)
Q Consensus 113 ~~~~l~nl~~iL~~~G~~l~dVv----k~~vyl~d~~d~~~~~~v~~~~f 158 (190)
...++.++-..|+..|..+..+. ++.+.+.+-+.-..++.++++|+
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~av~~Lh~~f~ 63 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhc
Confidence 34466777888888888775554 44444444433445677777764
No 27
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=24.44 E-value=1.8e+02 Score=21.92 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=27.3
Q ss_pred cCccHHHHHHHHHHH-HHHHHHHcCCCccceeEEEEEecC
Q 029609 105 VSDTIEDQTEQVLKN-IGEILKASGADYSSVVKTTILLAD 143 (190)
Q Consensus 105 ~~~d~~~Q~~~~l~n-l~~iL~~~G~~l~dVvk~~vyl~d 143 (190)
+.++-++.++++-.. ++.++++.-.+.+|++++++-++.
T Consensus 12 V~~nt~eeI~~at~eLl~~i~~~N~~~pedv~sv~~svT~ 51 (125)
T COG4401 12 VESNTEEEILDATKELLEEIEEENITDPEDVVSVILSVTE 51 (125)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHhcCCChhheeeEEEEecc
Confidence 455555666665555 455666677899999999988873
No 28
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=24.15 E-value=1e+02 Score=28.70 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH------cCCCccceeEEEEEecCcCCHHHHHH
Q 029609 113 TEQVLKNIGEILKA------SGADYSSVVKTTILLADLKDFKTVNE 152 (190)
Q Consensus 113 ~~~~l~nl~~iL~~------~G~~l~dVvk~~vyl~d~~d~~~~~~ 152 (190)
=+.+++-++..++. +..+-+|+||+|.|+...+|++.+.+
T Consensus 415 P~A~ldi~kGAf~~G~Ryfs~y~~~sDlVRVTGYlVK~SdieK~~~ 460 (487)
T PF11230_consen 415 PEALLDICKGAFSLGMRYFSAYVSDSDLVRVTGYLVKRSDIEKFRQ 460 (487)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCceEEEeeeeehhhhHHHHHc
Confidence 34455555555553 12345799999999999999888754
No 29
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=24.07 E-value=1.4e+02 Score=28.75 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=27.2
Q ss_pred CEEEEeeeccccCCCCcccCccHHHHHHHHHHHHHH-HHHHcCCCccceeEEEE
Q 029609 87 NLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGE-ILKASGADYSSVVKTTI 139 (190)
Q Consensus 87 ~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~-iL~~~G~~l~dVvk~~v 139 (190)
=+||+||++|+ |.. -+-.+.| +-.+.+ .....|.+-+|||.++.
T Consensus 246 lyIYTSGTTGL-PKa------Avith~r--~~~~a~g~~~~~g~~~~DvvY~~l 290 (649)
T KOG1179|consen 246 LYIYTSGTTGL-PKA------AVITHLR--YLQGAAGFYYVFGMTADDVVYTTL 290 (649)
T ss_pred EEEEcCCCCCC-CHH------HHHHHHH--HHHHHHHHHHHhCCCccceEEEcc
Confidence 38999999987 331 1112221 222333 66778999999987764
No 30
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=24.07 E-value=3.1e+02 Score=20.71 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCCccceeEEEEEecC-c-CCHHHHHHHHHHhCC-CCCCee
Q 029609 114 EQVLKNIGEILKASGADYSSVVKTTILLAD-L-KDFKTVNEIYAKYFP-SPAPAR 165 (190)
Q Consensus 114 ~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d-~-~d~~~~~~v~~~~f~-~~~Par 165 (190)
+.+-+=+.++++..+.+.+||+++..-+|. + +.|+. ...++.+| ..-|-.
T Consensus 20 ~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~fPA--~a~R~~~g~~~Vpl~ 72 (118)
T PF07736_consen 20 EATRELLEEILERNELSPEDIVSIIFTVTPDLDAAFPA--AAARELPGWDDVPLM 72 (118)
T ss_dssp HHHHHHHHHHHHHTT--GGGEEEEEEEE-TT--SS-TC--HHHHHTTTGTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCcCccChH--HHHHccCCCCcccee
Confidence 334444678899999999999998887774 3 23443 23344445 444443
No 31
>PF07108 PipA: PipA protein; InterPro: IPR010777 This family consists of several Salmonella PipA (pathogenicity island-encoded protein A) and related phage sequences. PipA is thought to contribute to enteric but not to systemic salmonellosis [].
Probab=23.09 E-value=61 Score=26.05 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEeeeccccCCCCcccCccHHHHHHHHHHHHHHHHHHc
Q 029609 89 VFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKAS 127 (190)
Q Consensus 89 vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~~iL~~~ 127 (190)
.|+||-.|+||++. +.+| |-..|.+.|..+|+.+
T Consensus 40 y~iSg~ggidpd~E--iDdd---~Y~eC~~eLS~il~~A 73 (200)
T PF07108_consen 40 YLISGAGGIDPDTE--IDDD---IYDECYDELSSILQNA 73 (200)
T ss_pred HHHhCCCCCCCccc--ccch---HHHHHHHHHHHHHHHH
Confidence 47999999999753 2343 4455556666665543
No 32
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=22.58 E-value=49 Score=31.83 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=25.3
Q ss_pred CEEEEeeeccccCCCCcccCccHHHHHHHHHHHHH
Q 029609 87 NLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIG 121 (190)
Q Consensus 87 ~~vyvSGq~~~dp~~g~~~~~d~~~Q~~~~l~nl~ 121 (190)
-++||||++|. |.+=.+...++..|+.....++.
T Consensus 195 tiiYTSGTTG~-PKGVmLth~N~~~~v~~~~~~~~ 228 (613)
T COG1022 195 TIIYTSGTTGT-PKGVMLTHRNLLAQVAGIDEVLP 228 (613)
T ss_pred EEEEcCCCCCC-CceEEEehHHHHHHHHHHHhhCC
Confidence 58999999996 66444456788888877777664
No 33
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=21.56 E-value=2.9e+02 Score=20.89 Aligned_cols=44 Identities=9% Similarity=0.274 Sum_probs=30.2
Q ss_pred CccHHHHHHHHH-HHHHHHHHHcCCCccceeEEEEEecC-cC-CHHH
Q 029609 106 SDTIEDQTEQVL-KNIGEILKASGADYSSVVKTTILLAD-LK-DFKT 149 (190)
Q Consensus 106 ~~d~~~Q~~~~l-~nl~~iL~~~G~~l~dVvk~~vyl~d-~~-d~~~ 149 (190)
..|-++.+.++- +=+.++++..+.+.+||+++..-+|. ++ .|+.
T Consensus 11 ~~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA 57 (117)
T TIGR01796 11 ERNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTEDLHADFPA 57 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChH
Confidence 344444444443 34678889999999999999988874 43 4655
No 34
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=21.52 E-value=1.9e+02 Score=23.62 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccHHHHHHH-HHHHHHHHHHHcCCCccceeEEEEEecCc
Q 029609 107 DTIEDQTEQ-VLKNIGEILKASGADYSSVVKTTILLADL 144 (190)
Q Consensus 107 ~d~~~Q~~~-~l~nl~~iL~~~G~~l~dVvk~~vyl~d~ 144 (190)
.+..+++.. +++.+...|++.|..+.-|+.+.+.+++-
T Consensus 140 ~~~~~~i~~~I~~pt~~~l~~eg~~y~GvLy~glMlt~~ 178 (194)
T PF01071_consen 140 DELLEEIIEEILEPTLKGLKKEGIPYRGVLYAGLMLTED 178 (194)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTT---EEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeEEeCC
Confidence 345556654 88999999999999999999999999853
No 35
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=20.99 E-value=3e+02 Score=20.78 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=30.6
Q ss_pred CccHHHHHHHH-HHHHHHHHHHcCCCccceeEEEEEecC-cC-CHHHH
Q 029609 106 SDTIEDQTEQV-LKNIGEILKASGADYSSVVKTTILLAD-LK-DFKTV 150 (190)
Q Consensus 106 ~~d~~~Q~~~~-l~nl~~iL~~~G~~l~dVvk~~vyl~d-~~-d~~~~ 150 (190)
..|-++.+.++ -+=+.++++..+.+.+||+++..-+|. +. .|+..
T Consensus 11 ~~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~ 58 (117)
T cd02185 11 EENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAK 58 (117)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccChHH
Confidence 34444444443 344678899999999999999888874 43 46553
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.89 E-value=2.7e+02 Score=26.82 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=39.0
Q ss_pred ccHHHHH----HHHHHHHHHHHHHcCCCccceeEEEEEecCcCCHHHHHHHHHHhCCC
Q 029609 107 DTIEDQT----EQVLKNIGEILKASGADYSSVVKTTILLADLKDFKTVNEIYAKYFPS 160 (190)
Q Consensus 107 ~d~~~Q~----~~~l~nl~~iL~~~G~~l~dVvk~~vyl~d~~d~~~~~~v~~~~f~~ 160 (190)
.++++-+ +.+++.++.+|+.+|.+.++| .-.+.+-.....+.+.+..+++|++
T Consensus 302 ~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i-~~ViLvGGssriP~v~~~i~~~f~~ 358 (653)
T PTZ00009 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSV-HEVVLVGGSTRIPKVQSLIKDFFNG 358 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHC-cEEEEECCCCCChhHHHHHHHHhCC
Confidence 4455544 445667888999999988886 3444555667899999999999974
Done!